Query 016102
Match_columns 395
No_of_seqs 144 out of 759
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1518 Coproporphyrinogen III 100.0 1E-149 3E-154 1078.3 30.0 376 9-395 2-382 (382)
2 PRK05330 coproporphyrinogen II 100.0 8E-147 2E-151 1065.2 34.0 297 87-395 4-300 (300)
3 PF01218 Coprogen_oxidas: Copr 100.0 9E-148 2E-152 1070.1 13.5 296 91-395 1-296 (296)
4 COG0408 HemF Coproporphyrinoge 100.0 6E-144 1E-148 1028.3 28.4 300 86-395 3-303 (303)
5 PLN02873 coproporphyrinogen-II 100.0 8E-139 2E-143 997.8 30.3 271 125-395 1-274 (274)
6 PF04681 Bys1: Blastomyces yea 35.3 1.2E+02 0.0027 28.3 6.4 23 173-197 96-118 (155)
7 PF05936 DUF876: Bacterial pro 30.5 99 0.0021 32.2 5.5 111 93-206 276-391 (425)
8 COG1949 Orn Oligoribonuclease 29.1 14 0.00031 35.1 -0.7 21 241-261 135-155 (184)
9 cd02901 Macro_Poa1p_like Macro 28.9 40 0.00087 29.0 2.0 17 248-265 38-54 (140)
10 PF12268 DUF3612: Protein of u 26.6 45 0.00097 31.5 2.0 42 210-253 84-126 (178)
11 PF14226 DIOX_N: non-haem diox 25.9 29 0.00062 28.5 0.6 42 225-269 5-56 (116)
12 PF12138 Spherulin4: Spherulat 25.1 58 0.0013 31.9 2.7 49 254-304 82-132 (253)
13 PF03288 Pox_D5: Poxvirus D5 p 24.7 38 0.00082 26.9 1.1 14 252-265 25-38 (86)
14 TIGR03807 RR_fam_repeat putati 24.3 40 0.00087 23.1 1.0 11 333-343 9-19 (27)
15 PF08121 Toxin_33: Waglerin fa 24.1 42 0.00091 21.8 1.0 12 221-232 1-12 (22)
16 KOG3063 Membrane coat complex 24.0 42 0.00092 33.8 1.5 28 216-256 246-273 (301)
17 COG4820 EutJ Ethanolamine util 23.5 2.8E+02 0.0062 27.8 6.9 80 96-187 77-159 (277)
18 PF12211 LMWSLP_N: Low molecul 20.6 65 0.0014 32.2 2.0 19 328-346 69-87 (258)
19 PHA02087 hypothetical protein 20.3 77 0.0017 26.4 2.0 22 272-299 60-81 (83)
20 cd01825 SGNH_hydrolase_peri1 S 20.3 1.6E+02 0.0034 25.5 4.2 70 234-308 120-189 (189)
No 1
>KOG1518 consensus Coproporphyrinogen III oxidase CPO/HEM13 [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-149 Score=1078.32 Aligned_cols=376 Identities=62% Similarity=1.068 Sum_probs=343.3
Q ss_pred cccccceeeecCcc---cccccCCCccccccCccccCCCCCCccceeeeeccccccCCCCCCCCCcccccCCCccCCCCC
Q 016102 9 ASSSFTLFRVPSSW---STKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKETPETERPPTFLRESDDKESSSSS 85 (395)
Q Consensus 9 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 85 (395)
|+||++|..++.-+ ++++.-+++. + .-+++ .-+.+++++.++++ |+++++..+.|-++++..+ ...+..+
T Consensus 2 ~rh~~~l~s~gtfq~~~~~rg~~srg~-~---lgtgl-~~~~~~~~ah~~~a-i~pkv~gt~~~fm~~~~sD-~~~l~~~ 74 (382)
T KOG1518|consen 2 ARHSSTLLSSGTFQPFSSHRGHYSRGS-T---LGTGL-PIRNKPNLAHRCSA-IEPKVPGTERPFMAPPDSD-DVTLPSS 74 (382)
T ss_pred CccccCCcCCCcccccccccCCCCCCc-c---cccCc-ccccccchhhhhhh-hcCCCCCcccccccCCCCC-cccCCCC
Confidence 56788887776655 5566555552 1 12333 33345667777775 9999999999988877664 3446667
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHhcc
Q 016102 86 ASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKA 165 (395)
Q Consensus 86 ~~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~ 165 (395)
+.+||++||.+|++.|++||++||++|++.+|.+|.|+|++||||||||||||+||||||||||+|||.|||+|+++|++
T Consensus 75 ~~~ir~~mE~lI~~~Qaevc~aleaidgg~kF~~D~W~r~eGGgGiscVlQDG~vFEKaGVnvSVV~G~l~p~Av~~mra 154 (382)
T KOG1518|consen 75 SSSIRAQMETLIREAQAEVCQALEAIDGGQKFKVDRWTRGEGGGGISCVLQDGNVFEKAGVNVSVVYGVLPPEAVQAMRA 154 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeeecCCCCCceEEEEccCCeeecCCceEEEEeccCCHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC-CCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHH
Q 016102 166 AASDEKP-GPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQK 244 (395)
Q Consensus 166 ~~~~~~~-~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeD~~hFH~~lK 244 (395)
++++.+. ++.||||+|||+||||+||||||+|+||||||++ +.+|. ++||||||+||||+|++|||++|||+++|
T Consensus 155 ~~k~lk~~~~lpFfA~GvS~ViHP~NPhaPT~HfNYRYFE~~---~~dg~-kqWWFGGG~DlTPsyl~eeD~~hFH~~~K 230 (382)
T KOG1518|consen 155 RHKNLKPTGPLPFFAAGVSSVIHPKNPHAPTTHFNYRYFETE---NADGV-KQWWFGGGADLTPSYLFEEDGKHFHQLHK 230 (382)
T ss_pred cccCCCCCCCCceeeccceeeeccCCCCCCceeeeeeEEEEe---cCCCc-EEEEecCCccCChhhhhhhhHHHHHHHHH
Confidence 9986544 7899999999999999999999999999999994 44565 89999999999999999999999999999
Q ss_pred HhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHH
Q 016102 245 SACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQH 324 (395)
Q Consensus 245 ~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~e 324 (395)
+|||+||+++||+||||||+||||+||+|.|||||||||||++.|+|+.|+|+++|+++|+|+|+|||+|||+++||++|
T Consensus 231 ~AcD~hdp~~YPrFKKWcDdYF~IkHR~E~RGiGGIFFDDld~~d~ee~f~fv~~Ca~avvPsYipiv~krkdmeft~~e 310 (382)
T KOG1518|consen 231 EACDKHDPTFYPRFKKWCDDYFYIKHRKERRGIGGIFFDDLDEPDPEELFSFVTDCARAVVPSYIPIVEKRKDMEFTEQE 310 (382)
T ss_pred HHhhccCCccchhHHhhhhhheeeeeccccccccceecccCCCCCHHHHHHHHHHHHHhhccccchhhhhhcCCCcChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccceeeeeeeeeccccccccC-CCceeeEeecCCCCccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 016102 325 KAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395 (395)
Q Consensus 325 r~wQl~RRGRYVEFNLvyDRGTkFGL~T-ggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~PrdWv 395 (395)
|+||+|||||||||||+|||||+|||+| |.||||||||||++|+|+|+|+|.+||+|++||+|+++|||||
T Consensus 311 k~wQ~lRRGrYvEFNliYDRGT~FGL~tpgsRiESILmsLPlha~w~y~h~P~~~sre~~ll~V~~~P~eWv 382 (382)
T KOG1518|consen 311 KQWQQLRRGRYVEFNLIYDRGTKFGLKTPGSRIESILMSLPLHASWEYMHEPKQGSREAKLLEVTHTPREWV 382 (382)
T ss_pred HHHHHHhccceEEEEEEEecCceeeccCCcchhHhHhhcccchhhhhhhcCCCCcchhhHHHHhhcCCcccC
Confidence 9999999999999999999999999999 6699999999999999999999999999999999999999997
No 2
>PRK05330 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=7.5e-147 Score=1065.16 Aligned_cols=297 Identities=53% Similarity=1.029 Sum_probs=286.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHhccc
Q 016102 87 SSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAA 166 (395)
Q Consensus 87 ~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~ 166 (395)
..+++++++||+.||++||++||++|++++|++|.|+|++||||+||||+||+||||||||||+|||+++|+++++|+.+
T Consensus 4 ~~~~~~~~~~~~~lQ~~Ic~~lE~~dg~~~F~~d~W~R~~GGGG~~~vl~~G~VfEK~gVN~S~V~G~~~p~~~~~~~~~ 83 (300)
T PRK05330 4 EPDKARVKAWLLGLQDRICAALEALDGEARFVEDSWQRPEGGGGRSRVLENGRVFEKAGVNFSHVHGEFLPPSATAHRPE 83 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEeccccCCCCCceEEEEeCCcEEEecceEEEEEecCCCHHHHHHhccC
Confidence 45789999999999999999999999888999999999999999999999999999999999999999999999988875
Q ss_pred cCCCCCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHHHh
Q 016102 167 ASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSA 246 (395)
Q Consensus 167 ~~~~~~~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeD~~hFH~~lK~~ 246 (395)
. .+.+|+||||||||||+||||||||||||||++. ++|. .||||||+||||+|+++||++|||+++|++
T Consensus 84 ~-----~g~~f~A~GiSlViHP~NP~vPtvH~N~R~f~~~----~~g~--~wWFGGG~DLTP~y~~~eD~~~FH~~~K~~ 152 (300)
T PRK05330 84 L-----AGRSFEATGVSLVAHPRNPYVPTVHMNVRFFIAT----KPGP--VWWFGGGFDLTPYYPFEEDAVHFHRTAKDA 152 (300)
T ss_pred C-----CCCCeEEEeeeEEEecCCCCCCceeeEEEEEEEc----cCCC--ceeecCCccCCCCCCChHHHHHHHHHHHHH
Confidence 3 3578999999999999999999999999999983 2333 799999999999999999999999999999
Q ss_pred hhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHH
Q 016102 247 CDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326 (395)
Q Consensus 247 CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~ 326 (395)
||+||+++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||++|+|||+||+++|||++||+
T Consensus 153 Cd~~~~~~Y~~fK~wCD~YFyi~HR~E~RGvGGiFfD~l~~~~~e~~f~F~~~vg~~fl~aY~pIv~rr~~~~~te~er~ 232 (300)
T PRK05330 153 CDPFGPEYYPRFKKWCDEYFYLKHRNEPRGVGGIFFDDLNSPGFERDFAFTQAVGDAFLDAYLPIVERRKDTPYGERERE 232 (300)
T ss_pred HhccChhhhHHHHHHHHHhcChhhcCCCCCCCeeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccceeeeeeeeeccccccccCCCceeeEeecCCCCccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 016102 327 WQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395 (395)
Q Consensus 327 wQl~RRGRYVEFNLvyDRGTkFGL~TggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~PrdWv 395 (395)
|||+||||||||||||||||+|||+||||||||||||||+|+|+|+++|++||+|++| ++|++|||||
T Consensus 233 ~Ql~rRGRYvEFNLvyDRGT~FGL~t~gr~EsILmSLPp~a~W~Y~~~p~~gs~E~~l-~~~~~prdW~ 300 (300)
T PRK05330 233 FQLYRRGRYVEFNLVYDRGTLFGLQTGGRTESILMSLPPLVRWEYDYQPEPGSPEARL-SDFLKPRDWL 300 (300)
T ss_pred HHHhhccceEEEEeeeecCcHhhccCCCcceeEEEcCCCCCcccCCCCCCCCCHHHHH-HHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999997
No 3
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i.e. coproporphyrin III oxidase or coproporphyrinogenase) catalyses the oxidative decarboxylation of coproporphyrinogen III to proto-porhyrinogen IX in the haem and chlorophyll biosynthetic pathways [, ]. The protein is a homodimer containing two internally bound iron atoms per molecule of native protein []. The enzyme is active in the presence of molecular oxygen that acts as an electron acceptor. The enzyme is widely distributed having been found in a variety of eukaryotic and prokaryotic sources.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 3EJO_B 3DWR_B 1VJU_B 2QT8_B 3DWS_A 2AEX_A 1TKL_B 1TK1_A 1TLB_Q 1TXN_A ....
Probab=100.00 E-value=8.8e-148 Score=1070.09 Aligned_cols=296 Identities=61% Similarity=1.167 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHhccccCCC
Q 016102 91 ARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDE 170 (395)
Q Consensus 91 ~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~~~~~ 170 (395)
+++++||++||++||++||++|++++|++|.|+|++||||+||||+||+||||||||||+|||+++|+++++|++++
T Consensus 1 ~~~~~~~~~lQ~~I~~~lE~~d~~~~F~~d~W~R~~gGgG~s~vl~~G~VfEKagVN~S~V~G~~~p~~a~~~~~~~--- 77 (296)
T PF01218_consen 1 QRVEAWFRDLQDRICAALEALDGKAKFKEDEWERPEGGGGRSRVLEDGNVFEKAGVNVSVVHGDLPPAAAKAMRPRL--- 77 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTSEEEEEEEEES-SSEEEEEEEEEEEEEEC-HHHHHHCHSTT---
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCceEEcccccCCCCCceEEEEeCCeEEEecceEEEEEeccCCHHHHHHhhccc---
Confidence 57999999999999999999998899999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHHHhhhcC
Q 016102 171 KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKF 250 (395)
Q Consensus 171 ~~~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeD~~hFH~~lK~~CD~~ 250 (395)
.+.+|+||||||||||+||||||+|||||||.+ +.++...+||||||+||||+|+++||++|||+++|++||+|
T Consensus 78 --~~~~f~A~GiSlViHP~NP~vPt~H~N~R~f~~----~~~~~~~~~WFGGG~DLTP~y~~~eD~~~FH~~~K~~cd~~ 151 (296)
T PF01218_consen 78 --AGQPFFATGISLVIHPRNPMVPTVHMNYRYFIA----EKEGKTGQWWFGGGADLTPYYLFEEDAKHFHQTLKEACDPH 151 (296)
T ss_dssp --TTSEEEEEEEEEEEEESSTTS-EEEEEEEEEEE----ECTTSEEEEEEEEEEEEE-SS--HHHHHHHHHHHHHHHGGG
T ss_pred --CCCceEEeccceEeecCCCCCCceeceeeEEee----ccccCccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 347999999999999999999999999999966 33456678999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHHHHHH
Q 016102 251 DPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQL 330 (395)
Q Consensus 251 ~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~wQl~ 330 (395)
|+++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||++|+|||+||+++|||++||+|||+
T Consensus 152 ~~~~Yp~fK~wcD~YFyipHR~E~RGiGGIFfD~l~~~~~e~~f~f~~~vg~~fl~aY~pIv~rr~~~~~t~~er~~Ql~ 231 (296)
T PF01218_consen 152 DPSYYPRFKKWCDEYFYIPHRNEHRGIGGIFFDDLNTGDFEKDFAFVKDVGEAFLPAYLPIVERRKDEPYTEEEREWQLY 231 (296)
T ss_dssp -TTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEE-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHH
T ss_pred ChHHHHHHHhhchhhcchhhcCCCcCCceeeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeeeeeeccccccccCCCceeeEeecCCCCccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 016102 331 RRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395 (395)
Q Consensus 331 RRGRYVEFNLvyDRGTkFGL~TggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~PrdWv 395 (395)
||||||||||||||||+|||+||||||||||||||+|+|+|+++|++||+|++|+++|++|||||
T Consensus 232 RRGRYvEFNLvyDRGT~FGL~t~gr~EsILmSLPp~a~W~Y~~~p~~gs~E~~l~~~~~~prdWv 296 (296)
T PF01218_consen 232 RRGRYVEFNLVYDRGTKFGLQTGGRIESILMSLPPTARWEYDYQPEPGSPEAELLEVLLKPRDWV 296 (296)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHTT--HHHHGGGS-SEEE--TT----TTSHHHHHHHTHHHH----
T ss_pred hccceEEEEEEeccCceecccCCCchhhhhhcCchhcCccCCCCCCCcCHHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 4
>COG0408 HemF Coproporphyrinogen III oxidase [Coenzyme metabolism]
Probab=100.00 E-value=6e-144 Score=1028.34 Aligned_cols=300 Identities=54% Similarity=1.043 Sum_probs=290.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCC-CCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHhc
Q 016102 86 ASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGG-GGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAK 164 (395)
Q Consensus 86 ~~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~G-GGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~ 164 (395)
.++.++++++||++||++||++||++|++.+|.+|.|+|++| |||.||||++|+||||+|||+|+|+|+++|+++++|+
T Consensus 3 ~~~~~~~~~~~~~~Lqd~Ic~~le~~dg~~~F~~d~W~r~~g~GgG~~~vl~~G~vFEk~GVn~S~V~G~~~P~~~~~~r 82 (303)
T COG0408 3 IEPDKQAVKAWLLNLQDEICAALEALDGEAKFVEDSWQREEGGGGGRSRVLMDGAVFEKGGVNFSTVFGEFSPESATAMR 82 (303)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhccceEEecccccccCCCCCCeeEEEecCceeeecCceeEEEecccChHHHhhCC
Confidence 457789999999999999999999999989999999999866 9999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHH
Q 016102 165 AAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQK 244 (395)
Q Consensus 165 ~~~~~~~~~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeD~~hFH~~lK 244 (395)
++. .+..|+|||||||+||+||+|||+|||||||++. ++|...+||||||+||||+|+++||++|||+++|
T Consensus 83 p~~-----~g~~F~A~GiSlV~HP~NP~vPt~H~N~R~f~a~----~~~~~~vwWFGGGaDLTP~y~~~eD~~hfH~~~k 153 (303)
T COG0408 83 PEL-----AGRRFFATGISLVAHPKNPYVPTVHLNVRYFEAE----KPGAEPVWWFGGGADLTPYYGFEEDAVHFHRAAK 153 (303)
T ss_pred chh-----cCCceEeeeeeEEEecCCCCCCceeeeEEEEEEe----cCCCCcceeecCCccCcccccchhHHHHHHHHHH
Confidence 875 4589999999999999999999999999999994 4466789999999999999999999999999999
Q ss_pred HhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHH
Q 016102 245 SACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQH 324 (395)
Q Consensus 245 ~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~e 324 (395)
++||+|++++||+||+|||||||||||+|+|||||||||||++.++|++|+|+++||++||++|+|||+||++++||++|
T Consensus 154 ~aC~~~~~~~YprfK~WCDeYFyLkHR~E~RGiGGiFfD~l~~~~~~~~Faf~qdvG~afl~aY~pIV~~r~~~~~te~e 233 (303)
T COG0408 154 DACDPHGPEDYPRFKKWCDEYFYLKHRNEPRGIGGIFFDDLNEPDFERDFAFTQDVGKAFLPAYLPIVERRKNMPWTERE 233 (303)
T ss_pred HHhcccChhhhhHHHHhhhhheeecccCCCCCcceeecccccCCCHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccceeeeeeeeeccccccccCCCceeeEeecCCCCccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 016102 325 KAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395 (395)
Q Consensus 325 r~wQl~RRGRYVEFNLvyDRGTkFGL~TggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~PrdWv 395 (395)
|+||||||||||||||||||||.||||||||+|||||||||+|+|+|+|+|++||+||+|+ ++++|||||
T Consensus 234 r~fQl~RRGRYVEFNLvyDRGT~FGLqTgGr~ESILmSlPP~vrW~Y~~~P~~gs~ea~L~-~fl~prdW~ 303 (303)
T COG0408 234 REFQLYRRGRYVEFNLVYDRGTLFGLQTGGRVESILMSLPPLVRWEYDYQPEPGSPEAALS-VFLKPRDWV 303 (303)
T ss_pred HHHHHHhccceEEEEEEEeccceEeeccCCchhhhhhcCCccccccCCCCCCCCCchhhhh-hhcCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999997
No 5
>PLN02873 coproporphyrinogen-III oxidase
Probab=100.00 E-value=8.2e-139 Score=997.84 Aligned_cols=271 Identities=82% Similarity=1.442 Sum_probs=258.2
Q ss_pred CCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHhccccC---CCCCCCCCeeEeeeEEEecCCCCCCCceeceee
Q 016102 125 PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAAS---DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYR 201 (395)
Q Consensus 125 ~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~~~---~~~~~~~~F~AtGiSlViHP~NP~vPTvH~N~R 201 (395)
++||||+||||+||+||||||||||+|||+++|+++++|++++. ....++.+|+||||||||||+||||||+|||||
T Consensus 1 ~~gGGG~t~vl~~G~VfEK~gVN~S~V~G~~~p~~~~~~~~~~~~~~~~~~~~~~f~A~GiSlViHP~NP~vPtvH~N~R 80 (274)
T PLN02873 1 PGGGGGISRVLQDGNVFEKAGVNVSVVYGTMPPEAYRAATGRGSRKGGDPAGGVPFFAAGLSSVMHPKNPMAPTFHFNYR 80 (274)
T ss_pred CCCCCCeEEEEECCeEEEecceEEEEEecCCCHHHHHhhCcccccccccccCCCCeEEEEeeEEEecCCCCCCceeeEEE
Confidence 46899999999999999999999999999999999999988752 122357899999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceee
Q 016102 202 YFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLF 281 (395)
Q Consensus 202 yfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeD~~hFH~~lK~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIF 281 (395)
|||+.++.+.+|....||||||+||||+|+++||++|||+++|++||+||+++||+||+|||+|||||||+|+|||||||
T Consensus 81 ~fe~~~~~~~~g~~~~wWFGGG~DLTP~y~~~eD~~~FH~~~K~aCd~~~~~~Y~~fK~wCD~YFyi~HR~E~RGvGGiF 160 (274)
T PLN02873 81 YFETDAPKDVPGAPRQWWFGGGTDLTPSYLFEEDVKHFHGTYKDVCDKHDPEFYPRFKKWCDDYFYIKHRGERRGLGGIF 160 (274)
T ss_pred EEEEeccccccCCCCCceecCcccCCCCCCChHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhcchhhcCCCCCCceee
Confidence 99995543345667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHHHHHHcccceeeeeeeeeccccccccCCCceeeEee
Q 016102 282 FDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILV 361 (395)
Q Consensus 282 FDdln~~~~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~wQl~RRGRYVEFNLvyDRGTkFGL~TggriESILm 361 (395)
|||||+.++|++|+|+++||++||+||+|||+||++++||++||+|||+||||||||||||||||+|||+||||||||||
T Consensus 161 fDdln~~~~e~~f~f~~~vg~afl~aY~pIv~rr~~~~~te~er~~Ql~RRGRYvEFNLvyDRGT~FGL~t~gr~EsILm 240 (274)
T PLN02873 161 FDDLNDRDQEDLLAFATDVANSVVPAYLPIVEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILV 240 (274)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCCCHHHHHHHHHhCcceEEEEeeeecCchhhccCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 016102 362 SLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395 (395)
Q Consensus 362 SLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~PrdWv 395 (395)
||||+|+|+|+++|+|||+|++|+++|++|||||
T Consensus 241 SLPp~a~W~Y~~~p~~gs~E~~l~~~l~~prdW~ 274 (274)
T PLN02873 241 SLPPTARWEYDHQPEEGSEEAELLDALRNPREWV 274 (274)
T ss_pred cCCCCCcccCCCCCCCCCHHHHHHHHhhCCCCCC
Confidence 9999999999999999999999999999999997
No 6
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=35.30 E-value=1.2e+02 Score=28.29 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=18.2
Q ss_pred CCCCeeEeeeEEEecCCCCCCCcee
Q 016102 173 GPIPFFAAGISSVLHPKNPFAPTLH 197 (395)
Q Consensus 173 ~~~~F~AtGiSlViHP~NP~vPTvH 197 (395)
.+.||. |=.|+++|.+|.+|.|+
T Consensus 96 fGdPF~--G~~v~v~ps~~~Cp~I~ 118 (155)
T PF04681_consen 96 FGDPFA--GHKVTVNPSDPSCPSIV 118 (155)
T ss_pred cCCCcC--CCEEEEecCCCCCCceE
Confidence 467884 55566799999999988
No 7
>PF05936 DUF876: Bacterial protein of unknown function (DUF876); InterPro: IPR010263 This family consists of a series of hypothetical bacterial sequences of unknown function. They are associated with a type VI secretion locus suggesting a possible virulence role [].
Probab=30.45 E-value=99 Score=32.15 Aligned_cols=111 Identities=21% Similarity=0.181 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHH-hccccCCCC
Q 016102 93 FEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRA-AKAAASDEK 171 (395)
Q Consensus 93 ~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~-~~~~~~~~~ 171 (395)
...-|..|.+.|.+.|+.+- ..+...-.+++. +.|=..+.+.|-.+++++-.=+.+ +++++++-..+ .....|...
T Consensus 276 l~~~F~~l~~~lr~~L~~v~-~~~~~~l~l~~~-~~g~~~~~~~d~~l~~~~~f~LaV-~a~~~~~~l~~~~p~~~Kigs 352 (425)
T PF05936_consen 276 LGPCFSPLFDLLRQLLSEVI-EQPAISLPLEQR-SDGIYVAQLPDSSLLEGARFYLAV-RADMPAEELREQFPQQAKIGS 352 (425)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cCCcEEEEEEEC-CCCEEEEEcCChhhccCceEEEEE-eCCCCHHHHHHHHHhhcEECC
Confidence 44556777778888887773 234555556544 355677888888888887776655 88988874332 222222100
Q ss_pred CC----CCCeeEeeeEEEecCCCCCCCceeceeeEEEec
Q 016102 172 PG----PIPFFAAGISSVLHPKNPFAPTLHFNYRYFETD 206 (395)
Q Consensus 172 ~~----~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~ 206 (395)
.+ =..----||-+.-=|+-|..=.+|.++.||+++
T Consensus 353 ~~~i~~Lv~~aLpGi~L~~l~~~P~~lp~~~g~~YF~ld 391 (425)
T PF05936_consen 353 PEQIRELVNRALPGIPLQHLPRPPRQLPYRSGYVYFELD 391 (425)
T ss_pred HHHHHHHHHHhCCCCcccccCCCCccCccCCCCEEEEEc
Confidence 00 011224588888889999988899999999994
No 8
>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]
Probab=29.14 E-value=14 Score=35.15 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.0
Q ss_pred HHHHHhhhcCCCCchHHHHHH
Q 016102 241 STQKSACDKFDPTFYPRFKKW 261 (395)
Q Consensus 241 ~~lK~~CD~~~~~~Y~~fK~w 261 (395)
.++|+.|.++.|+.|..|||-
T Consensus 135 STlKELa~RW~P~i~~~~~K~ 155 (184)
T COG1949 135 STLKELARRWNPEILAGFKKG 155 (184)
T ss_pred HHHHHHHHhhCcHhhhccccc
Confidence 589999999999999999973
No 9
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=28.86 E-value=40 Score=28.98 Aligned_cols=17 Identities=29% Similarity=0.792 Sum_probs=12.4
Q ss_pred hcCCCCchHHHHHHhhhh
Q 016102 248 DKFDPTFYPRFKKWCDDY 265 (395)
Q Consensus 248 D~~~~~~Y~~fK~wCDeY 265 (395)
++| |..+..++++|.++
T Consensus 38 ~~~-p~~~~~~~~~~~~~ 54 (140)
T cd02901 38 EKF-PEFVEEYRAACKKK 54 (140)
T ss_pred HHC-cHHHHHHHHHHHhc
Confidence 345 67788888888874
No 10
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=26.63 E-value=45 Score=31.47 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=31.5
Q ss_pred CCCCCCCcceecccCCCCCCCCC-hhhHHHHHHHHHHhhhcCCCC
Q 016102 210 DTPGAPRQWWFGGGTDLTPAYIF-EEDVKHFHSTQKSACDKFDPT 253 (395)
Q Consensus 210 ~~~g~~~~wWFGGG~DLTP~Y~~-eeD~~hFH~~lK~~CD~~~~~ 253 (395)
|..|+..+ .=-|+||+|.+.- --|+...-+.||++|-..+.+
T Consensus 84 D~Agn~hV--LCaGIDLNPAi~aQG~da~~iA~~lK~~Cv~~gG~ 126 (178)
T PF12268_consen 84 DLAGNNHV--LCAGIDLNPAIDAQGGDALSIAEELKQACVSNGGS 126 (178)
T ss_pred cCCCCcee--EEecccCCHhHhhcCCCHHHHHHHHHHHHHhCCCC
Confidence 44555433 4459999999854 459999999999999888643
No 11
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=25.92 E-value=29 Score=28.51 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=28.8
Q ss_pred CCCCCCCChhhHHHHHHHHHHhhhcCC----------CCchHHHHHHhhhhcCcC
Q 016102 225 DLTPAYIFEEDVKHFHSTQKSACDKFD----------PTFYPRFKKWCDDYFYIK 269 (395)
Q Consensus 225 DLTP~Y~~eeD~~hFH~~lK~~CD~~~----------~~~Y~~fK~wCDeYFyIp 269 (395)
||.+ ..++....-+.+.+||..+| .++..+..++|.++|-+|
T Consensus 5 Dls~---~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp 56 (116)
T PF14226_consen 5 DLSP---DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALP 56 (116)
T ss_dssp EHGG---CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSH
T ss_pred ECCC---CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhh
Confidence 6666 56777788888888887654 234566666777777665
No 12
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=25.08 E-value=58 Score=31.92 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=29.4
Q ss_pred chHHHHHHhhhhcCcCCCCCc--CCcceeeccCCCCcChhHHHHHHHHHHhhh
Q 016102 254 FYPRFKKWCDDYFYIKHRGER--RGLGGLFFDDLNDYDQEMLLSFATECANSV 304 (395)
Q Consensus 254 ~Y~~fK~wCDeYFyIpHR~E~--RGVGGIFFDdln~~~~e~~faF~~~vg~af 304 (395)
--..=++.-|.|.--.-..+. =+|.|||||..-... +...+.+++.+.+
T Consensus 82 ~~~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfDE~p~~~--~~~~y~~~l~~~v 132 (253)
T PF12138_consen 82 PLSEVKADIDTYASWYGQSEDYGYRVDGIFFDEAPNDY--ANLPYYQNLYNYV 132 (253)
T ss_pred CHHHHHHHHHHHhhccccccCCCcccceEEEecCCCcH--HHHHHHHHHHHHH
Confidence 344556667777655443332 589999999875432 4455555555443
No 13
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=24.71 E-value=38 Score=26.89 Aligned_cols=14 Identities=29% Similarity=1.120 Sum_probs=12.3
Q ss_pred CCchHHHHHHhhhh
Q 016102 252 PTFYPRFKKWCDDY 265 (395)
Q Consensus 252 ~~~Y~~fK~wCDeY 265 (395)
..+|..||.||++.
T Consensus 25 ~~lY~~Y~~wc~~n 38 (86)
T PF03288_consen 25 KDLYDAYKEWCEEN 38 (86)
T ss_dssp TBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 46899999999986
No 14
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=24.33 E-value=40 Score=23.07 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=8.7
Q ss_pred cceeeeeeeee
Q 016102 333 GRYVEFNLVYD 343 (395)
Q Consensus 333 GRYVEFNLvyD 343 (395)
|+|+|||.+-.
T Consensus 9 G~y~~~d~~vs 19 (27)
T TIGR03807 9 GIYLEFDAVVT 19 (27)
T ss_pred EEEEeeeeEEe
Confidence 89999996643
No 15
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=24.14 E-value=42 Score=21.77 Aligned_cols=12 Identities=50% Similarity=0.839 Sum_probs=9.7
Q ss_pred cccCCCCCCCCC
Q 016102 221 GGGTDLTPAYIF 232 (395)
Q Consensus 221 GGG~DLTP~Y~~ 232 (395)
||--||-|+|+-
T Consensus 1 ggkpdlrpcypp 12 (22)
T PF08121_consen 1 GGKPDLRPCYPP 12 (22)
T ss_pred CCCCccccCCCC
Confidence 677899999863
No 16
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.99 E-value=42 Score=33.82 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=22.0
Q ss_pred CcceecccCCCCCCCCChhhHHHHHHHHHHhhhcCCCCchH
Q 016102 216 RQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256 (395)
Q Consensus 216 ~~wWFGGG~DLTP~Y~~eeD~~hFH~~lK~~CD~~~~~~Y~ 256 (395)
+.--|=-|.||||. ++++|.+|...||-
T Consensus 246 PiRlFLagYdlTPt-------------mrdinkkFsVkyyL 273 (301)
T KOG3063|consen 246 PIRLFLAGYDLTPT-------------MRDINKKFSVKYYL 273 (301)
T ss_pred eeEEEecccCCCcc-------------hhhhcceeeeeeEE
Confidence 34578889999996 67888888877764
No 17
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=23.46 E-value=2.8e+02 Score=27.77 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCeeecccccCCC-CCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHhccccC--CCCC
Q 016102 96 MIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGG-GGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAAS--DEKP 172 (395)
Q Consensus 96 ~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~G-GGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~~~--~~~~ 172 (395)
.++.|.+++-+.| +.+|..-.=.-|.| -+|--|+.- ||+|-||..+|.|--+- -+++.-+..+.. -+..
T Consensus 77 iVrrlkd~lEk~l-----Gi~~tha~taiPPGt~~~~~ri~i--NViESAGlevl~vlDEP-TAaa~vL~l~dg~VVDiG 148 (277)
T COG4820 77 IVRRLKDTLEKQL-----GIRFTHAATAIPPGTEQGDPRISI--NVIESAGLEVLHVLDEP-TAAADVLQLDDGGVVDIG 148 (277)
T ss_pred HHHHHHHHHHHhh-----CeEeeeccccCCCCccCCCceEEE--EeecccCceeeeecCCc-hhHHHHhccCCCcEEEeC
Confidence 3455554443333 34565544444555 344555553 79999999999986432 222222222211 1112
Q ss_pred CCCCeeEeeeEEEec
Q 016102 173 GPIPFFAAGISSVLH 187 (395)
Q Consensus 173 ~~~~F~AtGiSlViH 187 (395)
++ .||||+|=.
T Consensus 149 GG----TTGIsi~kk 159 (277)
T COG4820 149 GG----TTGISIVKK 159 (277)
T ss_pred CC----cceeEEEEc
Confidence 22 789998744
No 18
>PF12211 LMWSLP_N: Low molecular weight S layer protein N terminal; InterPro: IPR021071 This family of proteins is found in bacteria. Proteins in this family are typically between 328 and 381 amino acids in length. There is a conserved LGDG sequence motif. Clostridial species have a layer of surface proteins surrounding their membrane. This layer is comprised of a high molecular weight protein and a low molecular weight protein. This domain is the N-terminal domain of the low molecular weight protein. It is a structural domain. ; PDB: 3CVZ_C.
Probab=20.63 E-value=65 Score=32.23 Aligned_cols=19 Identities=32% Similarity=0.802 Sum_probs=13.2
Q ss_pred HHHcccceeeeeeeeeccc
Q 016102 328 QQLRRGRYVEFNLVYDRGT 346 (395)
Q Consensus 328 Ql~RRGRYVEFNLvyDRGT 346 (395)
--|--|.||+||+.|.-++
T Consensus 69 dnLGDGdyVdF~ItY~~~~ 87 (258)
T PF12211_consen 69 DNLGDGDYVDFEITYNAAA 87 (258)
T ss_dssp HT--TT-EEEEEEEEEGGG
T ss_pred ccCCCCCeEEEEEEeCCCC
Confidence 3467899999999999744
No 19
>PHA02087 hypothetical protein
Probab=20.33 E-value=77 Score=26.44 Aligned_cols=22 Identities=45% Similarity=0.744 Sum_probs=16.7
Q ss_pred CCcCCcceeeccCCCCcChhHHHHHHHH
Q 016102 272 GERRGLGGLFFDDLNDYDQEMLLSFATE 299 (395)
Q Consensus 272 ~E~RGVGGIFFDdln~~~~e~~faF~~~ 299 (395)
-|.-|=|||-||| |..|.|...
T Consensus 60 pe~~ggggi~fdd------eem~~f~d~ 81 (83)
T PHA02087 60 PESEGGGGITFDD------EEMFHFFDE 81 (83)
T ss_pred CcccCCCceeecc------HHHHHHHHh
Confidence 3677889999987 677777654
No 20
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.29 E-value=1.6e+02 Score=25.47 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhc
Q 016102 234 EDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAY 308 (395)
Q Consensus 234 eD~~hFH~~lK~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY 308 (395)
+....+-+.++++|++++..+.+-++..||+ ..|-.. ..-.-+..|.+.. +.+.--.+.+.+.+++.+||
T Consensus 120 ~~~~~~~~~~~~~a~~~~v~~vd~~~~~~~~---~~~~~~-~~~~~~~~Dg~Hp-~~~G~~~~a~~i~~~i~~~~ 189 (189)
T cd01825 120 PGLDAVIAAQRRVAKEEGIAFWDLYAAMGGE---GGIWQW-AEPGLARKDYVHL-TPRGYERLANLLYEALLKAY 189 (189)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEeHHHHhCCc---chhhHh-hcccccCCCcccC-CcchHHHHHHHHHHHHHhhC
Confidence 4567788899999999998888888887775 122110 0011123465543 23455567778888888777
Done!