Query 016102
Match_columns 395
No_of_seqs 144 out of 759
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1txn_A Coproporphyrinogen III 100.0 1E-152 5E-157 1112.2 21.5 311 81-395 4-327 (328)
2 2aex_A Coproporphyrinogen III 100.0 3E-152 1E-156 1114.7 20.8 310 82-395 33-345 (346)
3 1vju_A Coproporphyrinogen III 100.0 9E-151 3E-155 1091.7 16.4 300 87-395 10-309 (309)
4 2r7r_A RNA-dependent RNA polym 41.0 17 0.0006 40.1 3.6 53 94-150 645-697 (1095)
5 2k4z_A DSRR; ISCA/SUFA/HESB li 40.4 77 0.0026 26.5 6.9 56 126-196 55-119 (125)
6 3bdk_A D-mannonate dehydratase 29.2 38 0.0013 33.6 3.7 50 252-302 267-323 (386)
7 1q8d_A GDNF family receptor al 24.8 38 0.0013 28.8 2.4 22 223-244 56-95 (108)
8 2r39_A FIXG-related protein; s 21.4 56 0.0019 26.6 2.7 24 336-359 11-34 (118)
9 2oa4_A SIR5; structure, struct 20.6 44 0.0015 27.7 2.0 23 242-265 52-74 (101)
10 1pzr_A Erythronolide synthase; 18.2 29 0.00099 26.4 0.3 12 219-230 13-24 (60)
No 1
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A
Probab=100.00 E-value=1.4e-152 Score=1112.17 Aligned_cols=311 Identities=52% Similarity=1.022 Sum_probs=241.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeeccccc-CCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHH
Q 016102 81 SSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSR-PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEA 159 (395)
Q Consensus 81 ~~~~~~~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R-~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a 159 (395)
+.++++++||++|++||+.||++||++||++|+ ++|++|.|+| ++||||+||||+||+||||||||||+|||+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~lQ~~Ic~~lE~~dg-~~F~~d~W~R~~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~ 82 (328)
T 1txn_A 4 PQDPRNLPIRQQMEALIRRKQAEITQGLESIDT-VKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAA 82 (328)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHHTTSS-SCCEECCCCCSCCCSSSCEEEEESCSSEEEEEEEEEEEEEEECHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEecceecCCCCCCeEEEEeCCcEEEecceEEEEEeccCCHHH
Confidence 345567789999999999999999999999996 8999999999 99999999999999999999999999999999999
Q ss_pred HHHhccccCCC-C----------CCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCC
Q 016102 160 YRAAKAAASDE-K----------PGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTP 228 (395)
Q Consensus 160 ~~~~~~~~~~~-~----------~~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP 228 (395)
+++|+++++.. . ..+.+|+||||||||||+||||||||||||||+++ +++|...+||||||+||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~---~~~g~~~~wWFGGG~DLTP 159 (328)
T 1txn_A 83 VSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETW---NQDGTPQTWWFGGGADLTP 159 (328)
T ss_dssp HHTTGGGCTTCCCC----------CCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE---CTTSSEEEEEEEEEEEEEC
T ss_pred HHhhcccccccccccccccccccCCCCCeEEEEeeEEEecCCCCCCceeeeEEEEEEe---cCCCCccceeecCCccCCC
Confidence 99998865533 2 45789999999999999999999999999999994 3557667899999999999
Q ss_pred CCCChhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhc
Q 016102 229 AYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAY 308 (395)
Q Consensus 229 ~Y~~eeD~~hFH~~lK~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY 308 (395)
+|+++||++|||+++|++||+||+++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||+||
T Consensus 160 ~y~~~eD~~hFH~~~K~aCd~~~~~~Yp~fK~wCDeYFyi~HR~E~RGvGGIFfDdl~~~~~e~~faf~~~vg~afl~aY 239 (328)
T 1txn_A 160 SYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSY 239 (328)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTHHHHHEECGGGGGGGGTCCCCCCCEEEEEEEECSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHhcchhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHcccceeeeeeeeeccccccccC-CCceeeEeecCCCCccccccCCCCCCCHHHHHHHH
Q 016102 309 IPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDA 387 (395)
Q Consensus 309 ~pIv~rr~~~p~te~er~wQl~RRGRYVEFNLvyDRGTkFGL~T-ggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~ 387 (395)
+|||+||+++|||++||+|||+||||||||||||||||+|||+| |||||||||||||+|+|+|+|+|++||+|++|+++
T Consensus 240 ~pIv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~FGL~tpggr~ESILmSLPp~a~W~Y~~~pe~gS~Ea~l~~~ 319 (328)
T 1txn_A 240 LTIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNHHPAPGSREAKLLEV 319 (328)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHTHHHHHC-------------------------------------------------
T ss_pred HHHHHHhCCCCCCHHHHHHHHhcccceEEEEeeeecCchhhCCCCCCCceeeeecCCCCCccccCCCCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hcCCCCCC
Q 016102 388 CINPKEWI 395 (395)
Q Consensus 388 l~~PrdWv 395 (395)
|++|||||
T Consensus 320 ~~~prdW~ 327 (328)
T 1txn_A 320 TTKPREWV 327 (328)
T ss_dssp --------
T ss_pred hcCcccCC
Confidence 99999997
No 2
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens}
Probab=100.00 E-value=3.3e-152 Score=1114.73 Aligned_cols=310 Identities=56% Similarity=1.077 Sum_probs=297.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHH
Q 016102 82 SSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYR 161 (395)
Q Consensus 82 ~~~~~~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~ 161 (395)
+.+++++||++|++||+.||++||++||++|++++|++|.|+|++||||+||||+||+||||||||||+|||+++|++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~lQ~~Ic~~lE~~dg~~~F~~d~W~R~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~~~ 112 (346)
T 2aex_A 33 LRRRPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAK 112 (346)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEETTTEEEEEEEEESCSSEEEEEEEEEEEEEECCHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEecCccCCCCCCeEEEEeCCcEEEecceEEEEEeccCChHHHH
Confidence 33457789999999999999999999999998789999999999999999999999999999999999999999999999
Q ss_pred HhccccCCC--CCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHH
Q 016102 162 AAKAAASDE--KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHF 239 (395)
Q Consensus 162 ~~~~~~~~~--~~~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeD~~hF 239 (395)
+|+++++.. ..++.+|+||||||||||+||||||||||||||+++ .+|...+||||||+||||+|+++||++||
T Consensus 113 ~~~~~~~~l~~~~~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~----~~g~~~~wWFGGG~DLTP~Y~~~eD~~hF 188 (346)
T 2aex_A 113 QMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVE----EADGNKQWWFGGGCDLTPTYLNQEDAVHF 188 (346)
T ss_dssp HHHHTTCCCCCBTTBCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE----CSTTCEEEEEEEEEEEECSSCCHHHHHHH
T ss_pred hcCCcccccccccCCCCeEEEEeeEEEecCCCCCCceeeeEEEEEee----cCCCCCceeecCCccCCCCCCCHHHHHHH
Confidence 999976533 346789999999999999999999999999999994 34666789999999999999999999999
Q ss_pred HHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCC
Q 016102 240 HSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTP 319 (395)
Q Consensus 240 H~~lK~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY~pIv~rr~~~p 319 (395)
|+++|++||+||+++||+||+|||+|||||||+|+||||||||||||++++|++|+|+++||++||+||+|||+||+++|
T Consensus 189 H~~~K~aCd~~~~~~Yp~fK~wCDeYFyi~HR~E~RGVGGIFfDdln~~~~e~~faf~~~vg~afl~aY~pIv~rr~~~~ 268 (346)
T 2aex_A 189 HRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDS 268 (346)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHTEEGGGTEESSSEEEEEEEECCSCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhcChHhHHHHHHHHHHhcChhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcccceeeeeeeeeccccccccC-CCceeeEeecCCCCccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 016102 320 FTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395 (395)
Q Consensus 320 ~te~er~wQl~RRGRYVEFNLvyDRGTkFGL~T-ggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~PrdWv 395 (395)
||++||+|||+||||||||||||||||+|||+| |||||||||||||+|+|+|+|+|++||+|++|+++|++|||||
T Consensus 269 ~te~er~~Ql~RRGRYVEFNLvyDRGT~FGL~Tpggr~ESILmSLPp~a~W~Y~~~pe~gS~Ea~l~~~~~~prdW~ 345 (346)
T 2aex_A 269 FTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVLRHPRDWV 345 (346)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCCTTGGGSSSCCHHHHHHHCCSCCCCCCCCCCCTTSHHHHHHHHHHSCCCCC
T ss_pred CCHHHHHHHHhhCCeeeEEEEEeecCccccccCCCCChhhhhhcCCCcCccccCCCCCCCCHHHHHHHHhcCccccC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999997
No 3
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=100.00 E-value=9e-151 Score=1091.66 Aligned_cols=300 Identities=47% Similarity=0.907 Sum_probs=279.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHhccc
Q 016102 87 SSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAA 166 (395)
Q Consensus 87 ~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~ 166 (395)
.-+++++++||+.||++||++||++|++++|++|.|+|++||||+||||+||+||||||||||+|+|+++|+++++++++
T Consensus 10 ~~~~~~~~~~~~~lQ~~Ic~~lE~~dg~~~F~~d~W~R~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~~~~~~p~ 89 (309)
T 1vju_A 10 SLAVEAVKDFLLKLQDDICEALEAEDGQATFVEDKWTREGGGGGRTRVMVDGAVIEKGGVNFSHVYGKGLPMSSTERHPD 89 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEETTTEEEEEEEEESCSSEEEEEEEEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEecCccCCCCCCeEEEEeCCcEEEecceEEEEEeCCCChHHHHHhccc
Confidence 35789999999999999999999999888999999999999999999999999999999999999998666666677664
Q ss_pred cCCCCCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHHHh
Q 016102 167 ASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSA 246 (395)
Q Consensus 167 ~~~~~~~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeD~~hFH~~lK~~ 246 (395)
. .+.+|+||||||||||+||||||||||||||+++ ++|....||||||+||||+|+++||++|||+++|++
T Consensus 90 ~-----~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~----~~g~~~~wWFGGG~DLTP~y~~~eD~~hFH~~~k~a 160 (309)
T 1vju_A 90 I-----AGCNFEAMGVSLVIHPKNPHVPTSHANVRLFVAE----REGKEPVWWFGGGFDLTPYYAVEEDCRDFHQVAQDL 160 (309)
T ss_dssp C-----TTCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE----ETTEEEEEEEEEEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred c-----CCCCeEEEEEeEEEecCCCCCCceeeeEEEEEee----cCCCCcceeecCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 3 3469999999999999999999999999999993 346556899999999999999999999999999999
Q ss_pred hhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHH
Q 016102 247 CDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326 (395)
Q Consensus 247 CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~ 326 (395)
||+||+++||+||+|||+|||||||+|+||||||||||||++++|++|+|+++||++||+||+|||+||+++|||++||+
T Consensus 161 Cd~~~~~~Yp~fK~wCDeYFyl~HR~E~RGVGGIFfDdl~~~~~e~~faf~~~vg~afl~aY~pIv~rr~~~~~te~er~ 240 (309)
T 1vju_A 161 CKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVE 240 (309)
T ss_dssp HGGGCTTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HhhcCchhhHHHHHHHHHhcchhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccceeeeeeeeeccccccccCCCceeeEeecCCCCccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 016102 327 WQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395 (395)
Q Consensus 327 wQl~RRGRYVEFNLvyDRGTkFGL~TggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~PrdWv 395 (395)
|||+||||||||||||||||+|||+||||||||||||||+|+|+|+++|++||+|++|+++|++|||||
T Consensus 241 ~Ql~RRGRYVEFNLvyDRGT~FGL~tggr~ESILmSLPp~a~W~Y~~~pe~gS~Ea~L~~~~~~prdW~ 309 (309)
T 1vju_A 241 FQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILISLPPRARWGYNWQPEPGTPEARLTEYFLTKRQWV 309 (309)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTCCHHHHGGGSCSCCCCCTTCCCCTTSHHHHHHHTHHHHCCCC
T ss_pred HHHhhccceEEEEeeeecCchhhccCCCcceeeeecCCccCeeccCCCCCCCCHHHHHHHHhcCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 4
>2r7r_A RNA-dependent RNA polymerase; viral protein, RNA-dependent RNA polymerase, single subunit polymerase fold, fingers, PALM, thumb; 2.60A {Simian rotavirus} PDB: 2r7q_A 2r7s_A 2r7t_A 2r7u_A 2r7v_A 2r7w_A* 2r7x_A* 2r7o_A
Probab=40.96 E-value=17 Score=40.10 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEE
Q 016102 94 EKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSV 150 (395)
Q Consensus 94 e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~ 150 (395)
++++..+|+.|.+.-.++..+ -+.=. .--|=.=--|-+.+|++|||||||+=.
T Consensus 645 ~q~i~~vs~~vk~~YsrmNak--VKALa--S~tGlEmAKRyIagGkIFfRagIniln 697 (1095)
T 2r7r_A 645 KQMIQDVSNDVRETYARMNAK--VKALV--STVGIEIAKRYIAGGKIFFRAGINLLN 697 (1095)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC--CEEEE--ESSCEECSSCEEETTEEECCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhhHH--HHHHH--hhhhHHHHHHHhhcccceecccccccc
Confidence 567888999999988888642 22110 011100111445589999999999843
No 5
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=40.35 E-value=77 Score=26.54 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=32.3
Q ss_pred CCCCceEEEee------CCceEEeeeeEEEEeeccCCHHHHHHhccccCCCCCCCCCeeE---eeeEEEecCCCCCCCce
Q 016102 126 GGGGGISRVLQ------DGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFA---AGISSVLHPKNPFAPTL 196 (395)
Q Consensus 126 ~GGGG~s~Vl~------~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~~~~~~~~~~~F~A---tGiSlViHP~NP~vPTv 196 (395)
+|| |.+..|. +-.|||..||.| -+.+..+..+.+. ...|.- .|-..++. ||++.+.
T Consensus 55 ~gG-G~~Y~l~l~~~~~~D~v~e~~Gv~v-----~VD~~s~~~L~G~-------~IDy~~~~l~g~gF~~~--NPna~~~ 119 (125)
T 2k4z_A 55 PDG-SIDYRMGFDDLTEDDIRLTSEGVEI-----VIAPDYVSLLDQT-------TLDYVELEPGQFHFIFL--NPRDPTY 119 (125)
T ss_dssp TTS-CEEEEEEEECCCSSSCEEECSSCEE-----ECCTTTHHHHTTE-------EEEEEEEETTEEEEEEE--CSSSCSS
T ss_pred CCC-CEEEEEEecCCCCCceEEEECCEEE-----EEeHHHHHhhCCC-------EEEEEeCCCCcCeEEEC--CCCCCcc
Confidence 445 8887764 346999999877 3344444444332 123433 34455664 9988753
No 6
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=29.22 E-value=38 Score=33.56 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=36.1
Q ss_pred CCchHHHHHHh--hhhcCcCCCCCcCCcceeeccCCC-----CcChhHHHHHHHHHHh
Q 016102 252 PTFYPRFKKWC--DDYFYIKHRGERRGLGGLFFDDLN-----DYDQEMLLSFATECAN 302 (395)
Q Consensus 252 ~~~Y~~fK~wC--DeYFyIpHR~E~RGVGGIFFDdln-----~~~~e~~faF~~~vg~ 302 (395)
.+...-+++.. |+=.++.=|+-.|++.| |.+..- +-|+...++-.+++|-
T Consensus 267 ~D~~~~i~~~~~~~RI~hvHlkDv~~~~~g-f~e~~~g~g~G~vD~~~i~~aL~~~gY 323 (386)
T 3bdk_A 267 NDVLAMTEYALKRNRINFMHTRNVTAGAWG-FQETAHLSQAGDIDMNAVVKLLVDYDW 323 (386)
T ss_dssp CCHHHHHHHHHHTTCEEEEECCCEEEETTE-EEECCSSGGGSSCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHhCCcCeEEEEeecCCCCCCCC-ccccCCCcCCCCcCHHHHHHHHHHhCC
Confidence 45677788888 88888877877777777 766432 2367788888777773
No 7
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=24.78 E-value=38 Score=28.76 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=14.9
Q ss_pred cCCCCCCCCC------------------hhhHHHHHHHHH
Q 016102 223 GTDLTPAYIF------------------EEDVKHFHSTQK 244 (395)
Q Consensus 223 G~DLTP~Y~~------------------eeD~~hFH~~lK 244 (395)
|+++||-|+. +||+.+|..-.+
T Consensus 56 Gt~mTPNYvdn~s~sVspWC~C~~SGN~~eeCe~fl~~Ft 95 (108)
T 1q8d_A 56 GTVMTPNYVDSSSLSVAPWCDCSNSGNDLEDCLKFLNFFK 95 (108)
T ss_dssp TSTTCCC--------CCCSCBCTTCGGGHHHHHHHHHHHH
T ss_pred ccccCcccccCCCceeeCCcccCCCCCCHHHHHHHHHHHc
Confidence 8999999987 678888776543
No 8
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=21.42 E-value=56 Score=26.58 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=19.8
Q ss_pred eeeeeeeeccccccccCCCceeeE
Q 016102 336 VEFNLVYDRGTTFGLKTGGRIESI 359 (395)
Q Consensus 336 VEFNLvyDRGTkFGL~TggriESI 359 (395)
+|.|.+.|||..|=..++|.||..
T Consensus 11 ~~l~V~rdR~~Ly~~~~dG~I~N~ 34 (118)
T 2r39_A 11 AGMSVIRDRNQLFRVNSAGEVENT 34 (118)
T ss_dssp EEEEEEECSSCCCCC--CCSEEEE
T ss_pred cEEEEEecCCceEEEcCCCeEEEE
Confidence 799999999999998889988864
No 9
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=20.62 E-value=44 Score=27.73 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHhhhcCCCCchHHHHHHhhhh
Q 016102 242 TQKSACDKFDPTFYPRFKKWCDDY 265 (395)
Q Consensus 242 ~lK~~CD~~~~~~Y~~fK~wCDeY 265 (395)
++.+||.+|+- -...|..|+..|
T Consensus 52 S~~EAa~ry~I-s~~ei~~W~r~y 74 (101)
T 2oa4_A 52 TLAEAKQTYGL-SDEEFNSWVSAL 74 (101)
T ss_dssp CHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred CHHHHHHHhCC-CHHHHHHHHHHH
Confidence 47899999999 689999999998
No 10
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=18.23 E-value=29 Score=26.37 Aligned_cols=12 Identities=50% Similarity=0.756 Sum_probs=10.3
Q ss_pred eecccCCCCCCC
Q 016102 219 WFGGGTDLTPAY 230 (395)
Q Consensus 219 WFGGG~DLTP~Y 230 (395)
-||||-|||=.=
T Consensus 13 ~~~~~~~~~~tg 24 (60)
T 1pzr_A 13 RFGGGEDLLMSG 24 (60)
T ss_dssp HHHCCCSSCCCC
T ss_pred HhcCCchHHhcC
Confidence 599999999764
Done!