BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016103
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 142/252 (56%), Gaps = 6/252 (2%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
HFVLVH GAWCWYK +AL+ G VTA+DL +GI+ I + S Y+ PL +F
Sbjct: 14 HFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEF 73
Query: 203 LEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNL-LDMFSQQTG 261
+ LP EK+ILVGH GG IS AME FP KIS AVF++ M G N+ + G
Sbjct: 74 MASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLM--PGPNIDATTVCTKAG 131
Query: 262 STDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR--HIPFAP 319
S L + Y NG PPT + L +++ SP +D+ALA+ +R ++ A
Sbjct: 132 SAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAE 191
Query: 320 VLEK-LSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPFFSK 378
+ K + LS +YGSV+R +I E++A+ + MI +PP++V ++G+DH SK
Sbjct: 192 DISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDHVTMMSK 251
Query: 379 PQALHKLLVEIS 390
PQ L L+ I+
Sbjct: 252 PQQLFTTLLSIA 263
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 174 bits (441), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 142/252 (56%), Gaps = 6/252 (2%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
HFVLVH GAWCWYK +AL+ G VTA+DL +GI+ I + S Y+ PL +F
Sbjct: 14 HFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEF 73
Query: 203 LEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNL-LDMFSQQTG 261
+ LP EK+ILVGH GG IS AME FP KIS AVF++ M G N+ + G
Sbjct: 74 MASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLM--PGPNIDATTVCTKAG 131
Query: 262 STDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR--HIPFAP 319
S L + Y NG PPT + L +++ SP +D+ALA+ +R ++ A
Sbjct: 132 SAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAE 191
Query: 320 VLEK-LSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPFFSK 378
+ K + LS +YGSV+R +I E++A+ + MI +PP++V ++G+DH SK
Sbjct: 192 DISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDHVTMMSK 251
Query: 379 PQALHKLLVEIS 390
PQ L L+ I+
Sbjct: 252 PQQLFTTLLSIA 263
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 141/252 (55%), Gaps = 6/252 (2%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
HFVLVH GAWCWYK +AL+ G VTA+DL +GI+ I + S Y+ PL +F
Sbjct: 14 HFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEF 73
Query: 203 LEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNL-LDMFSQQTG 261
+ LP EK+ILVGH GG IS AME FP KIS AVF++ M G N+ + G
Sbjct: 74 MASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLM--PGPNIDATTVCTKAG 131
Query: 262 STDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR--HIPFAP 319
S L + Y NG PPT + L +++ SP +D+ALA+ +R ++ A
Sbjct: 132 SAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAE 191
Query: 320 VLEK-LSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPFFSK 378
+ K + LS +YGSV+R +I E++A+ + MI +PP++V ++G+D SK
Sbjct: 192 DISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDAVTMMSK 251
Query: 379 PQALHKLLVEIS 390
PQ L L+ I+
Sbjct: 252 PQQLFTTLLSIA 263
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 5/255 (1%)
Query: 140 ETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPL 199
+ HFVLVHGG GAW WYK LLE G KVTA+DL+ AGI+ + I + Y +PL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQ- 258
+ + +P EKV+L+GH FGG + AME +P KIS AVF++A M +L F +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 259 -QTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR--HI 315
+ D+M +Q Y N N P ++ L + +F +D+ LA + R +
Sbjct: 129 NEKCPADMMLDSQFSTYGNPEN-PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSL 187
Query: 316 PFAPVLEKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPF 375
F + + S +YGSV+R YI ED + P+ Q+ + S +KV +K ADH
Sbjct: 188 FFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADHMGM 247
Query: 376 FSKPQALHKLLVEIS 390
S+P+ + K L++IS
Sbjct: 248 LSQPREVXKCLLDIS 262
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 5/255 (1%)
Query: 140 ETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPL 199
+ HFVLVHGG GAW WYK LLE G KVTA+DL+ AGI+ + I + Y +PL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQ- 258
+ + +P EKV+L+GH FGG + AME +P KIS AVF++A M +L F +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 259 -QTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR--HI 315
+ D+M +Q Y N N P ++ L + +F +D+ LA + R +
Sbjct: 129 NEKCPADMMLDSQFSTYGNPEN-PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSL 187
Query: 316 PFAPVLEKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPF 375
F + + S +YGSV+R YI ED + P+ Q+ + S +KV +K ADH
Sbjct: 188 FFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADHMGM 247
Query: 376 FSKPQALHKLLVEIS 390
S+P+ + K L++IS
Sbjct: 248 LSQPREVXKXLLDIS 262
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 137/255 (53%), Gaps = 5/255 (1%)
Query: 140 ETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPL 199
+ HFVLVHGG GAW WYK LLE G KVTA+DL+ AGI+ + I + Y +PL
Sbjct: 3 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 62
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQ- 258
+ + +P EKV+L+GH FGG + AME +P KIS AVF++A M +L F +
Sbjct: 63 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 122
Query: 259 -QTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR--HI 315
+ D+M +Q Y N N P ++ L + +F +D+ LA + R +
Sbjct: 123 NEKCPADMMLDSQFSTYGNPEN-PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSL 181
Query: 316 PFAPVLEKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPF 375
F + + S +YGSV+R YI ED + P+ Q+ + S +KV +K AD
Sbjct: 182 FFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADAMGM 241
Query: 376 FSKPQALHKLLVEIS 390
S+P+ + K L++IS
Sbjct: 242 LSQPREVCKCLLDIS 256
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 137/255 (53%), Gaps = 5/255 (1%)
Query: 140 ETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPL 199
+ HFVLVHGG GAW WYK LLE G KVTA+DL+ AGI+ + I + Y +PL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQ- 258
+ + +P EKV+L+GH FGG + AME +P KIS AVF++A M +L F +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 259 -QTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR--HI 315
+ D+M +Q Y N N P ++ L + +F +D+ LA + R +
Sbjct: 129 NEKCPADMMLDSQFSTYGNPEN-PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSL 187
Query: 316 PFAPVLEKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPF 375
F + + S +YGSV+R YI ED + P+ Q+ + S +KV +K AD
Sbjct: 188 FFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADAMGM 247
Query: 376 FSKPQALHKLLVEIS 390
S+P+ + K L++IS
Sbjct: 248 LSQPREVCKCLLDIS 262
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 9/254 (3%)
Query: 142 NHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
+HFVLVH GAW WYK LLE G +VTA++L +GI + ++ +Y KPL +
Sbjct: 5 HHFVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKPLIE 64
Query: 202 FLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQ---NLLDMFSQ 258
L+ LP+ E+VILVG FGG I+ A ++FP KI VF+ A + ++LD + +
Sbjct: 65 TLKSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYME 124
Query: 259 QTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHIPF- 317
G F N + + + +K L+ P +D LA + R F
Sbjct: 125 MPGGLGDCE----FSSHETRNGTMSLLKMGPKFMKARLYQNCPIEDYELAKMLHRQGSFF 180
Query: 318 -APVLEKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPFF 376
+ +K S+ YGSV+R Y+ + ED AIP + MI++ KV+ + G DH
Sbjct: 181 TEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNVSKVYEIDGGDHMVML 240
Query: 377 SKPQALHKLLVEIS 390
SKPQ L L I+
Sbjct: 241 SKPQKLFDSLSAIA 254
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 130/258 (50%), Gaps = 11/258 (4%)
Query: 140 ETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPL 199
E HFVLVHG G W WYK LLE G KVTA+DL +G + +L Y PL
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPL 62
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAM---LTNGQNLLDMF 256
+ E L EKVILVGH GG + A E +P KI AVF+AA + N +L+ +
Sbjct: 63 XELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQY 122
Query: 257 SQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHIP 316
+++T + + + FL +P T+ L L+ +D+ALAS +R P
Sbjct: 123 NERTPAENWLDTQ--FLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPEDLALASSLVR--P 178
Query: 317 FAPVLEKLS----LSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADH 372
+ E LS +D ++GSV+R YI ED IP Q+ I++ + +KGADH
Sbjct: 179 SSLFXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADH 238
Query: 373 SPFFSKPQALHKLLVEIS 390
+PQ L L+EI+
Sbjct: 239 XAXLCEPQKLCASLLEIA 256
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 130/258 (50%), Gaps = 11/258 (4%)
Query: 140 ETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPL 199
E HFVLVHG G W WYK LLE G KVTA+DL +G + +L Y PL
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPL 62
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAM---LTNGQNLLDMF 256
+ E L EKVILVGH GG + A E +P KI AVF+AA + N +L+ +
Sbjct: 63 XELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQY 122
Query: 257 SQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHIP 316
+++T + + + FL +P T+ L L+ +D+ALAS +R P
Sbjct: 123 NERTPAENWLDTQ--FLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPEDLALASSLVR--P 178
Query: 317 FAPVLEKLS----LSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADH 372
+ E LS +D ++GSV+R YI ED IP Q+ I++ + +KGADH
Sbjct: 179 SSLFXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADH 238
Query: 373 SPFFSKPQALHKLLVEIS 390
+PQ L L+EI+
Sbjct: 239 XAXLCEPQKLCASLLEIA 256
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 127/254 (50%), Gaps = 6/254 (2%)
Query: 141 TNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLT 200
T HFVL+H GAW W+K LE G KVTA+D+ +GI I S +Y +PL
Sbjct: 3 TAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLL 62
Query: 201 DFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQQT 260
FLEKLP EKVI+VG G I+ A + + KI+ VF + + + +
Sbjct: 63 TFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLL 122
Query: 261 GSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHIP---F 317
S R + F + N + T + L LL+E LF + + LA + MR P F
Sbjct: 123 ESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMR--PGSLF 180
Query: 318 APVL-EKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPFF 376
VL ++ ++ YGS+ + YI T +D Q+ I + PP+KV++++G DH
Sbjct: 181 QNVLAQRPKFTEKGYGSIPKVYIWTDQDKIFLPDFQRWQIANYPPDKVYQVQGGDHKLQL 240
Query: 377 SKPQALHKLLVEIS 390
+K + + +L E++
Sbjct: 241 TKTEEVAHILQEVA 254
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 2/257 (0%)
Query: 136 LPDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQY 195
+ + T HFVL+H GAW W+K LE G KVTA+D+ +GI I S +Y
Sbjct: 2 ISKMVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEY 61
Query: 196 VKPLTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDM 255
+PL FLEKLP EKVI+VG G I+ A + + KI+ VF + + +
Sbjct: 62 SEPLLTFLEKLPQGEKVIIVGESXAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYT 121
Query: 256 FSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHI 315
+ S R + F + N + T + L LL+E LF + + LA + MR
Sbjct: 122 VEKLLESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKG 181
Query: 316 P-FAPVL-EKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHS 373
F VL ++ ++ YGS+++ YI T +D Q+ I + P+KV++++G DH
Sbjct: 182 SLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHK 241
Query: 374 PFFSKPQALHKLLVEIS 390
+K + + +L E++
Sbjct: 242 LQLTKTEEVAHILQEVA 258
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 2/257 (0%)
Query: 136 LPDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQY 195
+ + T HFVL+H GAW W+K LE G KVTA+D+ +GI I S +Y
Sbjct: 2 ISKMVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEY 61
Query: 196 VKPLTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDM 255
+PL FLEKLP EKVI+VG G I+ A + + KI+ VF + + +
Sbjct: 62 SEPLLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYT 121
Query: 256 FSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHI 315
+ S R + F + N + T + L LL+E LF + + LA + MR
Sbjct: 122 VEKLLESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKG 181
Query: 316 P-FAPVL-EKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHS 373
F VL ++ ++ YGS+++ YI T +D Q+ I + P+KV++++G DH
Sbjct: 182 SLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHK 241
Query: 374 PFFSKPQALHKLLVEIS 390
+K + + +L E++
Sbjct: 242 LQLTKTEEVAHILQEVA 258
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 2/257 (0%)
Query: 136 LPDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQY 195
+ + T HFVL+H GAW W+K LE G KVTA+D+ +GI I S +Y
Sbjct: 2 ISKMVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEY 61
Query: 196 VKPLTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDM 255
+PL FLEKLP EKVI+VG G I+ A + + KI+ VF + + +
Sbjct: 62 SEPLLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYT 121
Query: 256 FSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHI 315
+ S R + F + N + T + L LL+E LF + + LA + MR
Sbjct: 122 VEKLLESFPDARDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKG 181
Query: 316 P-FAPVL-EKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHS 373
F VL ++ ++ YGS+++ YI T +D Q+ I + P+KV++++G DH
Sbjct: 182 SLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHK 241
Query: 374 PFFSKPQALHKLLVEIS 390
+K + + +L E++
Sbjct: 242 LQLTKTEEVAHILQEVA 258
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 2/257 (0%)
Query: 136 LPDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQY 195
+ + T HFVL+H GAW W+K LE G KVTA+D+ +GI I S +Y
Sbjct: 2 ISKMVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEY 61
Query: 196 VKPLTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDM 255
+PL FLEKLP EKVI+VG G I+ A + + KI+ VF + + +
Sbjct: 62 SEPLLTFLEKLPQGEKVIIVGEACAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYT 121
Query: 256 FSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHI 315
+ S R + F + N + T + L LL+E LF + + LA + MR
Sbjct: 122 VEKLLESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKG 181
Query: 316 P-FAPVL-EKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHS 373
F VL ++ ++ YGS+++ YI T +D Q+ I + P+KV++++G DH
Sbjct: 182 SLFQNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHK 241
Query: 374 PFFSKPQALHKLLVEIS 390
+K + + +L E++
Sbjct: 242 LQLTKTEEVAHILQEVA 258
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 127/254 (50%), Gaps = 6/254 (2%)
Query: 141 TNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLT 200
T HFVL+H GAW W+K LE G KVTA+D+ +GI I S +Y +PL
Sbjct: 3 TAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLL 62
Query: 201 DFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQQT 260
FLEKLP EKVI+VG G I+ A + + KI+ VF + + + +
Sbjct: 63 TFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLL 122
Query: 261 GSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHIP---F 317
S R + F + N + T + L LL+E LF + + LA + MR P F
Sbjct: 123 ESFPDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMVMR--PGSLF 180
Query: 318 APVL-EKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHSPFF 376
VL ++ ++ YGS+++ YI T +D Q+ I + P+KV++++G DH
Sbjct: 181 QNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQL 240
Query: 377 SKPQALHKLLVEIS 390
+K + + +L E++
Sbjct: 241 TKTEEVAHILQEVA 254
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 17/257 (6%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
HFVL+H GAW W+K LLE G KVTA+DL +G+ I S +Y +PL F
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 203 LEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQ-------NLLDM 255
LE LP EKVILVG GG I+ A + + KI+ AVF + + L+++
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYXEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 256 FSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHI 315
F +T F Y + K T + L +LL+E L+ ++ LA + R
Sbjct: 125 FPDWKDTT-------YFTYTK-DGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKG 176
Query: 316 P-FAPVLEKLS-LSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHS 373
F +L K + YGS+++ Y+ T +D Q I + P+KV++++G DH
Sbjct: 177 SLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHK 236
Query: 374 PFFSKPQALHKLLVEIS 390
+K + + ++L E++
Sbjct: 237 LQLTKTKEIAEILQEVA 253
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 17/257 (6%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
HFVL+H GAW W+K LLE G KVTA+DL +G+ I S +Y +PL F
Sbjct: 4 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 63
Query: 203 LEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQ-------NLLDM 255
LE LP EKVILVG GG I+ A + + KI+ AVF + + L+++
Sbjct: 64 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 123
Query: 256 FSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHI 315
F +T F Y + K T + L +LL+E L+ ++ LA + R
Sbjct: 124 FPDWKDTT-------YFTYTK-DGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKG 175
Query: 316 P-FAPVLEKLS-LSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHS 373
F +L K + YGS+++ Y+ T +D Q I + P+KV++++G DH
Sbjct: 176 SLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHK 235
Query: 374 PFFSKPQALHKLLVEIS 390
+K + + ++L E++
Sbjct: 236 LQLTKTKEIAEILQEVA 252
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 17/257 (6%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
HFVL+H GAW W+K LLE G KVTA+DL +G+ I S +Y +PL F
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 203 LEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQ-------NLLDM 255
LE LP EKVILVG GG I+ A + + KI+ AVF + + L+++
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 256 FSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHI 315
F +T F Y + K T + L +LL+E L+ ++ LA + R
Sbjct: 125 FPDWKDTT-------YFTYTK-DGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKG 176
Query: 316 P-FAPVLEKLS-LSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHS 373
F +L K + YGS+++ Y+ T +D Q I + P+KV++++G DH
Sbjct: 177 SLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHK 236
Query: 374 PFFSKPQALHKLLVEIS 390
+K + + ++L E++
Sbjct: 237 LQLTKTKEIAEILQEVA 253
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 17/257 (6%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
HFVL+H GAW W+K LLE G KVTA+DL +G+ I S +Y +PL F
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 203 LEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQ-------NLLDM 255
LE LP EKVILVG GG I+ A + + KI+ AVF + + L+++
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 256 FSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMRHI 315
F +T F Y + K T + L +LL+E L+ ++ LA + R
Sbjct: 125 FPDWKDTT-------YFTYTK-DGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKG 176
Query: 316 P-FAPVLEKLS-LSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADHS 373
F +L K + YGS+++ Y+ T +D Q I + P+KV++++G DH
Sbjct: 177 SLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHL 236
Query: 374 PFFSKPQALHKLLVEIS 390
+K + + ++L E++
Sbjct: 237 LQLTKTKEIAEILQEVA 253
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 144 FVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFL 203
+L HG F A W +TI +L + G++V A+D G S + S Q L
Sbjct: 49 ILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHALL 108
Query: 204 EKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNL------LDMFS 257
E+L A + ++GH GG + L+P ++ + V + L + + L +D +
Sbjct: 109 ERLGVA-RASVIGHSXGGXLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWRSVDDWY 167
Query: 258 QQ--TGSTDLMRQAQIFLYANGNNKP 281
++ S + +RQ Q Y G +P
Sbjct: 168 RRDLQTSAEGIRQYQQATYYAGEWRP 193
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQY-----VKPL 199
L HG + W I L + G++V A+D+ G G +++ + +Y K +
Sbjct: 43 CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEM 98
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQQ 259
FL+KL + + +GHD+GG + Y +P ++ + + N+ + S
Sbjct: 99 VTFLDKL-GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLES-- 155
Query: 260 TGSTDLMRQAQIFLYANGNNKPPTA-IDLDKSLLKEL--LFNQSPAKDIALASVSMRHIP 316
++ +F Y +P A +L+++L + LF S +++ V
Sbjct: 156 ------IKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGL 209
Query: 317 FAPVLEKLSLSDMKYGSVRRFYIE 340
F E+ SLS M +FY++
Sbjct: 210 FVNSPEEPSLSRMVTEEEIQFYVQ 233
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQY-----VKPL 199
L HG + W I L + G++V A+D+ G G +++ + +Y K +
Sbjct: 58 CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEM 113
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQQ 259
FL+KL + + +GHD+GG + Y +P ++ + + N+ + S
Sbjct: 114 VTFLDKL-GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLES-- 170
Query: 260 TGSTDLMRQAQIFLYANGNNKPPTA-IDLDKSLLKEL--LFNQSPAKDIALASVSMRHIP 316
++ +F Y +P A +L+++L + LF S +++ V
Sbjct: 171 ------IKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGL 224
Query: 317 FAPVLEKLSLSDMKYGSVRRFYIE 340
F E+ SLS M +FY++
Sbjct: 225 FVNSPEEPSLSRMVTEEEIQFYVQ 248
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQY-----VKPL 199
L HG + W I L + G++V A+D+ G G +++ + +Y K +
Sbjct: 262 CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEM 317
Query: 200 TDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKI 235
FL+KL + + +GHD+GG + Y +P ++
Sbjct: 318 VTFLDKL-GLSQAVFIGHDWGGMLVWYMALFYPERV 352
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 20/195 (10%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGIT-------SLSQYVK 197
+ +HG + W + L E G++ A DL G G DT G S+ V
Sbjct: 35 LFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG----DTTGAPLNDPSKFSILHLVG 90
Query: 198 PLTDFLEKL-PDAEKVILVGHDFGGACISYAMELF-PFKISKAVFIAAAMLTNG--QNLL 253
+ LE + P+ EKV +V HD+ GA I++ + LF P K+ V ++ N++
Sbjct: 91 DVVALLEAIAPNEEKVFVVAHDW-GALIAWHLCLFRPDKVKALVNLSVHFSKRNPKMNVV 149
Query: 254 DMFSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR 313
+ G + + Q+ P A KS+LK++L + PA +
Sbjct: 150 EGLKAIYGEDHYISRFQVPGEIEAEFAPIGA----KSVLKKILTYRDPAPFYFPKGKGLE 205
Query: 314 HIPFAPVLEKLSLSD 328
IP APV LS+
Sbjct: 206 AIPDAPVALSSWLSE 220
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 20/195 (10%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGIT-------SLSQYVK 197
+ +HG + W + L E G++ A DL G G DT G S+ V
Sbjct: 35 LFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG----DTTGAPLNDPSKFSILHLVG 90
Query: 198 PLTDFLEKL-PDAEKVILVGHDFGGACISYAMELF-PFKISKAVFIAAAMLTNG--QNLL 253
+ LE + P+ EKV +V HD+ GA I++ + LF P K+ V ++ N++
Sbjct: 91 DVVALLEAIAPNEEKVFVVAHDW-GALIAWHLCLFRPDKVKALVNLSVHFSKRNPKMNVV 149
Query: 254 DMFSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVSMR 313
+ G + + Q+ P A KS+LK++L + PA +
Sbjct: 150 EGLKAIFGEDHYISRFQVPGEIEAEFAPIGA----KSVLKKILTYRDPAPFYFPKGKGLE 205
Query: 314 HIPFAPVLEKLSLSD 328
IP APV LS+
Sbjct: 206 AIPDAPVALSSWLSE 220
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 144 FVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQY-----VKP 198
L HG + W I L + GF+V AID+ G G D++ + +Y K
Sbjct: 259 LCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYG----DSSSPPEIEEYAMELLCKE 314
Query: 199 LTDFLEKLPDAEKVILVGHDFGGACISYAMELF 231
+ FL+KL + + +GHD+ G + + M LF
Sbjct: 315 MVTFLDKL-GIPQAVFIGHDWAGVMV-WNMALF 345
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 142 NHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
N + +HG ++ W + +E + DL G G NG L + K LT
Sbjct: 44 NAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTA 102
Query: 202 FLEKLPDAEKVILVGHDFGGA-CISYAME 229
+ E L +K+I VGHD+G A YA E
Sbjct: 103 WFELLNLPKKIIFVGHDWGAALAFHYAYE 131
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 142 NHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
N + +HG ++ W + +E + DL G G NG L + K LT
Sbjct: 45 NAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTA 103
Query: 202 FLEKLPDAEKVILVGHDFGGA-CISYAME 229
+ E L +K+I VGHD+G A YA E
Sbjct: 104 WFELLNLPKKIIFVGHDWGAALAFHYAYE 132
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 142 NHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
N + +HG ++ W + +E + DL G G NG L + K LT
Sbjct: 44 NAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTA 102
Query: 202 FLEKLPDAEKVILVGHDFGGA-CISYAME 229
+ E L +K+I VGHD+G A YA E
Sbjct: 103 WFELLNLPKKIIFVGHDWGAALAFHYAYE 131
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 142 NHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
N + +HG ++ W + +E + DL G G NG L + K LT
Sbjct: 45 NAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTA 103
Query: 202 FLEKLPDAEKVILVGHDFGGA-CISYAME 229
+ E L +K+I VGHD+G A YA E
Sbjct: 104 WFELLNLPKKIIFVGHDWGAALAFHYAYE 132
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 29/259 (11%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
H VL+HG G A W + I F + +DL G G + G +LS
Sbjct: 15 HLVLLHGWGLNAEVW-RCIDEELSSHFTLHLVDLPGFG----RSRGFGALS-LADXAEAV 68
Query: 203 LEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQ--------NLLD 254
L++ PD K I +G GG S P ++ V +A++ + + ++L
Sbjct: 69 LQQAPD--KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLA 126
Query: 255 MFSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVS-MR 313
F QQ S D R + FL A TA ++L K +L P D+ + ++
Sbjct: 127 GFQQQL-SDDQQRTVERFL-ALQTXGTETARQDARALKKTVLALPXPEVDVLNGGLEILK 184
Query: 314 HIPFAPVLEKLSLSDMK-YGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADH 372
+ L+ +S ++ YG + D +P + + P + + A H
Sbjct: 185 TVDLRQPLQNVSXPFLRLYGYL---------DGLVPRKVVPXLDKLWPHSESYIFAKAAH 235
Query: 373 SPFFSKPQALHKLLVEISK 391
+PF S P LLV + +
Sbjct: 236 APFISHPAEFCHLLVALKQ 254
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 31/260 (11%)
Query: 143 HFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAG-IHSFDTNGITSLSQYVKPLTD 201
H VL+HG G A W + I F + +DL G G F + +++ V
Sbjct: 15 HLVLLHGWGLNAEVW-RCIDEELSSHFTLHLVDLPGFGRSRGFGALSLADMAEAV----- 68
Query: 202 FLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQ--------NLL 253
L++ PD K I +G GG S P ++ V +A++ + + ++L
Sbjct: 69 -LQQAPD--KAIWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVL 125
Query: 254 DMFSQQTGSTDLMRQAQIFLYANGNNKPPTAIDLDKSLLKELLFNQSPAKDIALASVS-M 312
F QQ S D R + FL A TA ++L K +L P D+ + +
Sbjct: 126 AGFQQQL-SDDFQRTVERFL-ALQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEIL 183
Query: 313 RHIPFAPVLEKLSLSDMK-YGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGAD 371
+ + L+ +S+ ++ YG + D +P + + P + + A
Sbjct: 184 KTVDLRQPLQNVSMPFLRLYGYL---------DGLVPRKVVPMLDKLWPHSESYIFAKAA 234
Query: 372 HSPFFSKPQALHKLLVEISK 391
H+PF S P LLV + +
Sbjct: 235 HAPFISHPAEFCHLLVALKQ 254
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 137 PDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHS-FDTNGITSLSQY 195
PD + VL+HG + W I L G++V AID G G S + + +
Sbjct: 29 PDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKEL 88
Query: 196 VKPLTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNG 249
V + L+ AE+ +VGHD+G L P + + V I+ G
Sbjct: 89 VGDVVGVLDSY-GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPFAGRG 141
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 137 PDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHS-FDTNGITSLSQY 195
PD + VL+HG + W I L G++V AID G G S + + +
Sbjct: 23 PDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKEL 82
Query: 196 VKPLTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNG 249
V + L+ AE+ +VGHD+G L P + + V I+ G
Sbjct: 83 VGDVVGVLDSY-GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPFAGRG 135
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 145 VLVHGGGFGAWCWY---KTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
VL+HG G GA W + I L E G++V +D G G N + + L
Sbjct: 40 VLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKS 99
Query: 202 FLEKLPDAEKVILVGHDFGG-ACISYAMELFPFKISKAVFIAAA---------MLTNGQN 251
+++L D K+ L+G+ GG + +++ ++ +P ++ K V + M T G
Sbjct: 100 VVDQL-DIAKIHLLGNSMGGHSSVAFTLK-WPERVGKLVLMGGGTGGMSLFTPMPTEGIK 157
Query: 252 LLDMFSQQTGSTDLMRQAQIFLY 274
L+ +Q +L IF++
Sbjct: 158 RLNQLYRQPTIENLKLMMDIFVF 180
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFLE 204
VL+HG W + A L + G++V D G G S T G + L LE
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGY-DYDTFAADLNTVLE 85
Query: 205 KLPDAEKVILVGHDFG-GACISYAMELFPFKISKAVFIAA 243
L D + +LVG G G Y +I+K F+A+
Sbjct: 86 TL-DLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLAS 124
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFLE 204
VL+HG W + A L + G++V D G G S T G + L LE
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGY-DYDTFAADLNTVLE 85
Query: 205 KLPDAEKVILVGHDFG-GACISYAMELFPFKISKAVFIAA 243
L D + +LVG G G Y +I+K F+A+
Sbjct: 86 TL-DLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLAS 124
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 144 FVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQ--YVKPLTD 201
+ +HG W + L G++V A DL G G S +TS S ++ +
Sbjct: 29 VLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHG-RSSHLEMVTSYSSLTFLAQIDR 87
Query: 202 FLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFI 241
+++LPD + ++LVGH G + + P KI + + +
Sbjct: 88 VIQELPD-QPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFLE 204
VL+HG W + A L + G++V D G G S T G + L LE
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGY-DYDTFAADLNTVLE 85
Query: 205 KLPDAEKVILVGHDFG-GACISYAMELFPFKISKAVFIAA 243
L D + +LVG G G Y +I+K F+A+
Sbjct: 86 TL-DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLAS 124
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFLE 204
VL+HG W + A L + G++V D G G S T G + L LE
Sbjct: 28 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGY-DYDTFAADLNTVLE 86
Query: 205 KLPDAEKVILVGHDFG-GACISYAMELFPFKISKAVFIAA 243
L D + +LVG G G Y +I+ F+A+
Sbjct: 87 TL-DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLAS 125
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 23/134 (17%)
Query: 145 VLVHGGGFGAWC---WYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
+L+HG G G W TI L + ++V A D+ G G N S +V +
Sbjct: 29 ILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRPENYNYSKDSWVDHIIG 87
Query: 202 FLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAA----------------- 244
++ L + EK +VG+ FGG + ++ + V + AA
Sbjct: 88 IMDAL-EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYT 146
Query: 245 -MLTNGQNLLDMFS 257
+ N +NLLD+F+
Sbjct: 147 PSIENMRNLLDIFA 160
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 23/134 (17%)
Query: 145 VLVHGGGFGAWC---WYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
+L+HG G G W TI L + ++V A D+ G G N S +V +
Sbjct: 29 ILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRPENYNYSKDSWVDHIIG 87
Query: 202 FLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAA----------------- 244
++ L + EK +VG+ FGG + ++ + V + A
Sbjct: 88 IMDAL-EIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTEGLNAVWGYT 146
Query: 245 -MLTNGQNLLDMFS 257
+ N +NLLD+F+
Sbjct: 147 PSIENMRNLLDIFA 160
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 97/256 (37%), Gaps = 28/256 (10%)
Query: 144 FVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFL 203
F+ GG W ++ A L G++ D G G + G T+ + V +
Sbjct: 48 FIAGRGGAGRTWHPHQVPAFLA-AGYRCITFDNRGIGATE-NAEGFTTQTM-VADTAALI 104
Query: 204 EKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNLLDMFSQQTGST 263
E L D +VG G M + P +S AV +A T G+ LD Q
Sbjct: 105 ETL-DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMA----TRGR--LDRARQ----- 152
Query: 264 DLMRQAQIFLYANGNNKPPTAIDLDKSLLKEL---LFNQSPAKDIALASVSMRHIPFAPV 320
+A+ LY +G PPT D LL+ N A +A SM I P
Sbjct: 153 -FFNKAEAELYDSGVQLPPT-YDARARLLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPG 210
Query: 321 L--------EKLSLSDMKYGSVRRFYIETPEDNAIPIALQQSMINSSPPEKVFRLKGADH 372
L + L + + I +D P L + + ++ P + ++ A H
Sbjct: 211 LRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALPNGRYLQIPDAGH 270
Query: 373 SPFFSKPQALHKLLVE 388
FF +P+A++ +++
Sbjct: 271 LGFFERPEAVNTAMLK 286
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFLE 204
+ +HG ++ W I + G++ A DL G G S + L +V F++
Sbjct: 33 LFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXG-DSAKPDIEYRLQDHVAYXDGFID 91
Query: 205 KLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAA 243
L + +LV HD+G L P +++ F A
Sbjct: 92 AL-GLDDXVLVIHDWGSVIGXRHARLNPDRVAAVAFXEA 129
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 144 FVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFL 203
VL+HG F + WY IA ++ A+D+ G S N + + Y L D
Sbjct: 70 LVLLHGALFSSTXWYPNIADW-SSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVF 128
Query: 204 EKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAA 244
+ L EK +G GG + P ++ A ++ A
Sbjct: 129 DNL-GIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPA 168
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFLE 204
V HG A W + G++V A D G G + G + Y + E
Sbjct: 25 VFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTG-HDMDTYAADVAALTE 83
Query: 205 KLPDAEKVILVGHDFGGACIS-YAMELFPFKISKAVFIAA 243
L D + +GH GG ++ Y P +++KAV ++A
Sbjct: 84 AL-DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSA 122
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 145 VLVHGGGFGAWCWY---KTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
VL+HGGG GA W + IA+L F V A+D G G HS ++Y
Sbjct: 60 VLLHGGGPGAASWTNFSRNIAVLAR-HFHVLAVDQPGYG-HSDKRAEHGQFNRYAAMALK 117
Query: 202 FLEKLPDAEKVILVGHDFGGA-CISYAMELFPFKISKAVFIAAAMLT 247
L +V LVG+ GG + +A++ +P + + V + L+
Sbjct: 118 GLFDQLGLGRVPLVGNSLGGGTAVRFALD-YPARAGRLVLMGPGGLS 163
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 135 KLPDLETNH--------FVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDT 186
+LPD++ ++ +L+HG W W K I L E + V DL G G +
Sbjct: 15 QLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAEH-YDVIVPDLRGFG--DSEK 71
Query: 187 NGITSLSQY-VKPLTDFLEKLPDA---EKVILVGHDFGGACISYAMELFPFKISKA 238
+ LS+Y + D L DA EK +VGHDF + + + ++ KA
Sbjct: 72 PDLNDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKA 127
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 145 VLVHGGGFGAWCWY---KTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTD 201
VL+HGGG GA W + IA+L F V A+D G G HS ++Y
Sbjct: 40 VLLHGGGPGAASWTNFSRNIAVLAR-HFHVLAVDQPGYG-HSDKRAEHGQFNRYAAMALK 97
Query: 202 FLEKLPDAEKVILVGHDFGGA-CISYAMELFPFKISKAVFIAAAMLT 247
L +V LVG+ GG + +A++ +P + + V + L+
Sbjct: 98 GLFDQLGLGRVPLVGNALGGGTAVRFALD-YPARAGRLVLMGPGGLS 143
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 199 LTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNL 252
+ ++++ P + LVGH GG S L+P I K V +A A G L
Sbjct: 108 ILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDAL 161
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 305 IALASVSMRHIPFAPVLEKLSLSDM---KYGSVRRFYIETPED-------------NAIP 348
+A S + R + A L L +M K+GS+ +FY+ P + +P
Sbjct: 21 MATESPATRRVQVAEHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLP 80
Query: 349 IALQQSMINSSPPEKVFRLKGADHSPFF 376
+A++Q ++ + P K + L+ A+ +P +
Sbjct: 81 MAVEQDVLIAVEPVKTYALQLANTNPLY 108
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 199 LTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNL 252
+ ++++ P + LVGH GG S L+P I K V +A A G L
Sbjct: 108 ILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDAL 161
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 199 LTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTNGQNL 252
+ ++++ P + LVGH GG S L+P I K V +A A G L
Sbjct: 108 ILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDAL 161
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 144 FVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFL 203
V HG A W + L G++V A D G G S +G + Y L +
Sbjct: 22 IVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSG-NDMDTYADDLAQLI 80
Query: 204 EKLPDAEKVILVGHDFGGACIS-YAMELFPFKISKAVFIAA 243
E L D +L G GG ++ Y +++KA I+A
Sbjct: 81 EHL-DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISA 120
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 144 FVLVHGGGFGAWCWYK-TIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
+L+HGGG A W T A++ ++ A+DL G S K + +
Sbjct: 41 LLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKDVGNV 100
Query: 203 LEKLPD--AEKVILVGHDFGGA 222
+E + ++L+GH GGA
Sbjct: 101 VEAMYGDLPPPIMLIGHSMGGA 122
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 145 VLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDFLE 204
VL+HG W + L G++V D G G S N + L LE
Sbjct: 27 VLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSS-KVNTGYDYDTFAADLHTVLE 85
Query: 205 KLPDAEKVILVGHDFG-GACISYAMELFPFKISKAVFIAA 243
L D V+LVG G G Y +++K F+A+
Sbjct: 86 TL-DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLAS 124
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 144 FVLVHGGGFGAWCWYK-TIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKPLTDF 202
+L+HGGG A W T A++ ++ A+DL G S K + +
Sbjct: 45 LLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKDVGNV 104
Query: 203 LEKLPD--AEKVILVGHDFGGA 222
+E + ++L+GH GGA
Sbjct: 105 VEAMYGDLPPPIMLIGHAMGGA 126
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 145 VLVHGGGFGAWCW---YKTIALLEEGGFKVTAIDLTG----AGIHSFDTNGITSLSQYVK 197
+++HGGG GA W Y+ + + G++V D G + + G+ + ++ VK
Sbjct: 37 IMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVN-ARAVK 95
Query: 198 PLTDFLEKLPDAEKVILVGHDFGGA-CISYAMELFPFKISKAVFIA---------AAMLT 247
L D L D ++ LVG+ GGA +++A+E +P +I K + + A M
Sbjct: 96 GLMDAL----DIDRAHLVGNSMGGATALNFALE-YPDRIGKLILMGPGGLGPSMFAPMPM 150
Query: 248 NGQNLLDMFSQQTGSTDLMRQAQIFLY 274
G LL + L + Q+FLY
Sbjct: 151 EGIKLLFKLYAEPSYETLKQMLQVFLY 177
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 145 VLVHGGGFGAWCW---YKTIALLEEGGFKVTAIDLTG----AGIHSFDTNGITSLSQYVK 197
+++HGGG GA W Y+ + + G++V D G + + G+ + ++ VK
Sbjct: 37 IMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVN-ARAVK 95
Query: 198 PLTDFLEKLPDAEKVILVGHDFGGA-CISYAMELFPFKISKAVFIA---------AAMLT 247
L D L D ++ LVG+ GGA +++A+E +P +I K + + A M
Sbjct: 96 GLMDAL----DIDRAHLVGNSMGGATALNFALE-YPDRIGKLILMGPGGLGPSMFAPMPM 150
Query: 248 NGQNLLDMFSQQTGSTDLMRQAQIFLY 274
G LL + L + Q+FLY
Sbjct: 151 EGIKLLFKLYAEPSYETLKQMLQVFLY 177
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 145 VLVHGGGFGAWCW---YKTIALLEEGGFKVTAIDLTG----AGIHSFDTNGITSLSQYVK 197
+++HGGG GA W Y+ + + G++V D G + + G+ + ++ VK
Sbjct: 34 IMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVN-ARAVK 92
Query: 198 PLTDFLEKLPDAEKVILVGHDFGGA-CISYAMELFPFKISKAVFIA---------AAMLT 247
L D L D ++ LVG+ GGA +++A+E +P +I K + + A M
Sbjct: 93 GLMDAL----DIDRAHLVGNAMGGATALNFALE-YPDRIGKLILMGPGGLGPSMFAPMPM 147
Query: 248 NGQNLLDMFSQQTGSTDLMRQAQIFLY 274
G LL + L + Q+FLY
Sbjct: 148 EGIKLLFKLYAEPSYETLKQMLQVFLY 174
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 145 VLVHGGGFGAWCW---YKTIALLEEGGFKVTAIDLTG----AGIHSFDTNGITSLSQYVK 197
+++HGGG GA W Y+ + + G++V D G + + G+ + ++ VK
Sbjct: 37 IMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVN-ARAVK 95
Query: 198 PLTDFLEKLPDAEKVILVGHDFGGA-CISYAMELFPFKISKAVFIA---------AAMLT 247
L D L D ++ LVG+ GGA +++A+E +P +I K + + A M
Sbjct: 96 GLMDAL----DIDRAHLVGNAMGGATALNFALE-YPDRIGKLILMGPGGLGPSMFAPMPM 150
Query: 248 NGQNLLDMFSQQTGSTDLMRQAQIFLY 274
G LL + L + Q+FLY
Sbjct: 151 EGIKLLFKLYAEPSYETLKQMLQVFLY 177
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 145 VLVHGGGFGAWCW---YKTIALLEEGGFKVTAIDLTG----AGIHSFDTNGITSLSQYVK 197
+++HGGG GA W Y+ + + G++V D G + + G+ + ++ VK
Sbjct: 37 IMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVN-ARAVK 95
Query: 198 PLTDFLEKLPDAEKVILVGHDFGGA-CISYAMELFPFKISKAVFIA---------AAMLT 247
L D L D ++ LVG+ GGA +++A+E +P +I K + + A M
Sbjct: 96 GLMDAL----DIDRAHLVGNAMGGATALNFALE-YPDRIGKLILMGPGGLGPSMFAPMPM 150
Query: 248 NGQNLLDMFSQQTGSTDLMRQAQIFLY 274
G LL + L + Q+FLY
Sbjct: 151 EGIKLLFKLYAEPSYETLKQMLQVFLY 177
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 145 VLVHGGGFGAWCW---YKTIALLEEGGFKVTAIDLTG----AGIHSFDTNGITSLSQYVK 197
+++HGGG GA W Y+ + + G++V D G + + G+ + ++ VK
Sbjct: 37 IMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVN-ARAVK 95
Query: 198 PLTDFLEKLPDAEKVILVGHDFGGA-CISYAMELFPFKISKAVFIA---------AAMLT 247
L D L D ++ LVG+ GGA +++A+E +P +I K + + A M
Sbjct: 96 GLMDAL----DIDRAHLVGNAMGGATALNFALE-YPDRIGKLILMGPGGLGPSMFAPMPM 150
Query: 248 NGQNLLDMFSQQTGSTDLMRQAQIFLY 274
G LL + L + Q+FLY
Sbjct: 151 EGIKLLFKLYAEPSYETLKQMLQVFLY 177
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 133 DEKLPDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSL 192
DE D E + F+ +HG ++ + K I + E G +V A D G G +
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYT 98
Query: 193 SQYVKP-LTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTN 248
++ + L +E+L D + LV D+GG P + + + + A ++T+
Sbjct: 99 FEFHRNFLLALIERL-DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTD 154
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 144 FVLVHGG-GF----GAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSLSQYVKP 198
VL HG GF G W+ + L G +V +++ DT+ + Q ++
Sbjct: 10 IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVS-----QLDTSEVRG-EQLLQQ 63
Query: 199 LTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAA 243
+ + + L KV L+GH GG I Y + P I+ A + A
Sbjct: 64 VEEIV-ALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 133 DEKLPDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSL 192
DE D E + F+ +HG ++ + K I + E G +V A D G G +
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYT 98
Query: 193 SQYVKP-LTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTN 248
++ + L +E+L D + LV D+GG P + + + + A ++T+
Sbjct: 99 FEFHRNFLLALIERL-DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTD 154
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 133 DEKLPDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSL 192
DE D E + F+ +HG ++ + K I + E G +V A D G G +
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYT 98
Query: 193 SQYVKP-LTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTN 248
++ + L +E+L D + LV D+GG P + + + + A ++T+
Sbjct: 99 FEFHRNFLLALIERL-DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTD 154
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 133 DEKLPDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAIDLTGAGIHSFDTNGITSL 192
DE D E + F+ +HG ++ + K I + E G +V A D G G +
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYT 98
Query: 193 SQYVKP-LTDFLEKLPDAEKVILVGHDFGGACISYAMELFPFKISKAVFIAAAMLTN 248
++ + L +E+L D + LV D+GG P + + + + A ++T+
Sbjct: 99 FEFHRNFLLALIERL-DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTD 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,085,081
Number of Sequences: 62578
Number of extensions: 428987
Number of successful extensions: 938
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 77
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)