Query 016104
Match_columns 395
No_of_seqs 342 out of 1483
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 07:57:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 100.0 2.7E-29 9.2E-34 217.1 11.2 111 97-210 16-129 (130)
2 3g0l_A Hwalp4, bromodomain adj 100.0 4E-29 1.4E-33 212.1 9.5 102 103-209 13-114 (117)
3 3d7c_A General control of amin 100.0 1.3E-28 4.5E-33 207.4 11.9 104 101-209 5-108 (112)
4 3jvl_A Bromodomain-containing 100.0 3.1E-29 1.1E-33 213.7 7.9 109 99-210 5-116 (120)
5 3mb3_A PH-interacting protein; 100.0 8.8E-29 3E-33 215.1 9.2 108 100-212 18-126 (135)
6 2oss_A HUNK1 protein, bromodom 100.0 2.3E-28 7.9E-33 210.4 11.5 105 103-210 21-125 (127)
7 3nxb_A CAT eye syndrome critic 99.9 2.5E-28 8.5E-33 206.9 9.8 101 102-207 15-115 (116)
8 3q2e_A Bromodomain and WD repe 99.9 2.7E-28 9.2E-33 208.8 10.0 105 103-212 10-115 (123)
9 1e6i_A Transcriptional activat 99.9 2.4E-28 8.1E-33 208.7 9.4 101 104-209 14-114 (121)
10 3p1f_A CREB-binding protein; s 99.9 5.8E-28 2E-32 205.5 11.5 106 101-209 9-115 (119)
11 2dat_A Possible global transcr 99.9 5.8E-28 2E-32 206.8 11.3 104 102-210 12-121 (123)
12 4alg_A Bromodomain-containing 99.9 4.8E-28 1.6E-32 215.1 10.9 108 102-212 31-138 (154)
13 2i7k_A Bromodomain-containing 99.9 9.1E-28 3.1E-32 203.9 12.1 106 100-210 5-110 (117)
14 3fkm_X Signaling protein; brom 99.9 6.3E-28 2.2E-32 216.8 11.2 108 99-209 17-124 (166)
15 2d9e_A Peregrin; four-helix bu 99.9 1.1E-27 3.6E-32 204.7 11.8 101 103-208 7-107 (121)
16 2yyn_A Transcription intermedi 99.9 1.1E-27 3.9E-32 208.2 11.8 105 103-213 20-126 (135)
17 2grc_A Probable global transcr 99.9 1.5E-27 5.2E-32 205.8 10.6 105 101-210 9-120 (129)
18 3mb4_A Protein polybromo-1; PB 99.9 1.5E-27 5.1E-32 204.5 10.1 103 102-209 14-122 (124)
19 3rcw_A Bromodomain-containing 99.9 3E-27 1E-31 205.4 11.5 106 98-208 8-113 (135)
20 3mqm_A Probable histone-lysine 99.9 1.9E-27 6.7E-32 204.3 9.7 106 102-212 8-119 (126)
21 3hme_A Bromodomain-containing 99.9 3.3E-27 1.1E-31 202.1 10.4 100 103-207 13-112 (123)
22 3iu5_A Protein polybromo-1; PB 99.9 3.8E-27 1.3E-31 199.7 10.2 102 104-210 6-113 (116)
23 3k2j_A Protein polybromo-1; PB 99.9 5.5E-27 1.9E-31 202.6 11.1 106 99-209 13-124 (130)
24 3ljw_A Protein polybromo-1; al 99.9 7.5E-27 2.6E-31 199.0 10.7 103 101-208 6-114 (120)
25 3uv4_A Second bromodomain of h 99.9 3.4E-26 1.2E-30 203.9 10.0 104 104-212 30-134 (158)
26 3tlp_A Protein polybromo-1; PB 99.9 6.4E-26 2.2E-30 200.4 11.3 105 106-215 27-138 (150)
27 2ri7_A Nucleosome-remodeling f 99.9 1E-25 3.6E-30 203.3 10.2 101 103-208 72-172 (174)
28 3dai_A ATPase family AAA domai 99.9 3.8E-25 1.3E-29 191.0 12.1 103 100-207 7-113 (130)
29 3o36_A Transcription intermedi 99.9 1.9E-25 6.6E-30 203.5 10.7 103 102-210 80-184 (184)
30 3uv5_A Transcription initiatio 99.9 2.2E-24 7.4E-29 207.3 10.9 105 102-211 13-117 (265)
31 3uv5_A Transcription initiatio 99.9 1.7E-24 5.7E-29 208.1 9.8 172 32-211 56-240 (265)
32 3u5n_A E3 ubiquitin-protein li 99.9 3.6E-24 1.2E-28 198.7 11.3 108 102-212 80-204 (207)
33 2dkw_A Hypothetical protein KI 99.9 7.9E-24 2.7E-28 183.0 11.3 100 100-209 9-112 (131)
34 2ro1_A Transcription intermedi 99.9 1.7E-24 5.9E-29 198.2 7.2 100 103-212 76-180 (189)
35 3aad_A Transcription initiatio 99.9 3E-23 1E-27 202.0 13.2 98 108-210 174-272 (292)
36 2r0y_A Chromatin structure-rem 99.9 3.4E-24 1.2E-28 210.2 3.9 87 117-208 177-263 (311)
37 3aad_A Transcription initiatio 99.9 1.4E-23 4.9E-28 204.3 8.3 102 102-208 46-147 (292)
38 2r10_A Chromatin structure-rem 99.9 1.7E-22 5.7E-27 202.1 7.8 87 117-208 227-313 (361)
39 2r10_A Chromatin structure-rem 99.8 8E-21 2.7E-25 189.9 6.8 99 103-208 78-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.8E-20 6E-25 183.9 7.2 95 107-208 32-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.8 3.8E-18 1.3E-22 149.0 11.4 97 104-209 8-110 (147)
42 2jns_A Bromodomain-containing 99.7 7.3E-18 2.5E-22 136.4 4.5 73 265-337 13-86 (90)
43 3lqh_A Histone-lysine N-methyl 99.6 3.8E-15 1.3E-19 135.3 7.9 98 102-215 74-171 (183)
44 2lm0_A AF4/FMR2 family member 96.0 0.0078 2.7E-07 50.3 5.2 63 268-331 57-120 (125)
45 2yy0_A C-MYC-binding protein; 57.0 16 0.00053 25.9 4.4 32 21-52 16-47 (53)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=2.7e-29 Score=217.13 Aligned_cols=111 Identities=41% Similarity=0.775 Sum_probs=102.6
Q ss_pred hhccHHHHHHHHHHHHHHHHcCCC---CCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHH
Q 016104 97 AGRRMQELKRQFAAIFRQITQHKW---AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADV 173 (395)
Q Consensus 97 ~~~~~~~l~~~~~~il~~l~~~~~---a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv 173 (395)
...++.+.++.|..||..|++++. +|||+.||++..+++||||++|++||||+||++||.++. |.++.+|.+||
T Consensus 16 k~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv 92 (130)
T 2ouo_A 16 KSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE---YRDAQEFGADV 92 (130)
T ss_dssp ---CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 345677788999999999999874 899999999987789999999999999999999999999 99999999999
Q ss_pred hchhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 174 RLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 174 ~LIf~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
+|||.||++||+++|.||.+|..|+..|+++|.++..
T Consensus 93 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 93 RLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999998753
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.96 E-value=4e-29 Score=212.13 Aligned_cols=102 Identities=34% Similarity=0.655 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016104 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
..++.|..||..|++|+.+|||..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.||+.
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~~ 87 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVFDNCET 87 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 466889999999999999999999999988 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016104 183 YNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
||+++|.+|.+|..|++.|++.|.+++
T Consensus 88 yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 88 FNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 3
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=1.3e-28 Score=207.39 Aligned_cols=104 Identities=30% Similarity=0.452 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhh
Q 016104 101 MQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (395)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na 180 (395)
...|...|..|+..|++|+.++||..||++.. +||||++|++||||+||++||+++. |.++.+|.+||+|||.||
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~li~~Na 79 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRY---YVTRKLFVADLQRVIANC 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCC---CcCHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999987 9999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016104 181 MKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 181 ~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
++||+++|.+|.+|..|+..|++.|+++.
T Consensus 80 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 80 REYNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999998864
No 4
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=3.1e-29 Score=213.65 Aligned_cols=109 Identities=42% Similarity=0.792 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHHHHHHcCCC---CCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhc
Q 016104 99 RRMQELKRQFAAIFRQITQHKW---AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 175 (395)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~~---a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~L 175 (395)
..+.+.++.|..||..|.+++. +|||..||++..+++||||++|++||||+||++||.++. |.++++|.+||+|
T Consensus 5 ~~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~l 81 (120)
T 3jvl_A 5 SKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESRE---YRDAQEFGADVRL 81 (120)
T ss_dssp CSSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHHH
Confidence 4556788999999999999886 999999999998889999999999999999999999999 9999999999999
Q ss_pred hhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 176 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 176 If~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
||.||++||+++|.+|.+|..|+..|++.|.++..
T Consensus 82 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 82 MFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999988864
No 5
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=8.8e-29 Score=215.08 Aligned_cols=108 Identities=31% Similarity=0.541 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016104 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
.+..|.+.|..||..|.+|+.+++|..||++.. +||||++|++||||+||+.||.++. |.++++|.+||+|||.|
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGN---YESPMELCKDVRLIFSN 92 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHH
Confidence 445688999999999999999999999999977 9999999999999999999999999 99999999999999999
Q ss_pred hcccCCC-CCHHHHHHHHHHHHHHHHHHhhCcCc
Q 016104 180 AMKYNDE-RDDVHVMAKSLLEKFEEKWLQLLPKV 212 (395)
Q Consensus 180 a~~YN~~-~S~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (395)
|+.||++ +|.||.+|..|++.|++.|..+++.+
T Consensus 93 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 93 SKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 99999999999999999999886643
No 6
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=2.3e-28 Score=210.45 Aligned_cols=105 Identities=35% Similarity=0.666 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016104 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
++...|..||..|++|+.+|+|..||++..+++||||++|++||||+||++||+++. |.++++|.+||+|||.||++
T Consensus 21 ~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~ 97 (127)
T 2oss_A 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNY---YWNAQECIQDFNTMFTNCYI 97 (127)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999875669999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 183 YNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
||+++|.+|.+|..|++.|+++|+++..
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 98 YNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999988754
No 7
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.95 E-value=2.5e-28 Score=206.90 Aligned_cols=101 Identities=29% Similarity=0.572 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016104 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
.++.+.|..||..|++|+.++||..||++.. +||||++|++||||+||++||+++. |.++++|.+||+|||.||+
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~ 89 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGL---YCTKEEFVNDMKTMFRNCR 89 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999987 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHh
Q 016104 182 KYNDERDDVHVMAKSLLEKFEEKWLQ 207 (395)
Q Consensus 182 ~YN~~~S~v~~~A~~L~~~Fe~~~~~ 207 (395)
.||+++|.+|.+|..|+..|++.|.+
T Consensus 90 ~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 90 KYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999864
No 8
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=2.7e-28 Score=208.83 Aligned_cols=105 Identities=32% Similarity=0.546 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016104 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
.|.++|..||..|++|+.+++|..||++.. +||||++|++||||+||++||.++. |.++.+|..||+|||.||+.
T Consensus 10 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~~ 84 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGN---YDSPLEFCKDIRLIFSNAKA 84 (123)
T ss_dssp CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHhhCcCc
Q 016104 183 YNDE-RDDVHVMAKSLLEKFEEKWLQLLPKV 212 (395)
Q Consensus 183 YN~~-~S~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (395)
||++ +|.||.+|..|+..|+++|..+++.+
T Consensus 85 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 85 YTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 99999999999999999999987654
No 9
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.95 E-value=2.4e-28 Score=208.69 Aligned_cols=101 Identities=33% Similarity=0.617 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016104 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
.+..|..||..|++|+.++||..||++.. +||||++|++||||+||++||+++. |.++.+|.+||+|||.||+.|
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNK---YQKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999987 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016104 184 NDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
|+++|.+|.+|..|++.|+++|..+.
T Consensus 89 N~~~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 89 NGENTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999998873
No 10
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=5.8e-28 Score=205.51 Aligned_cols=106 Identities=32% Similarity=0.564 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016104 101 MQELKRQFAAIFRQITQ-HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 101 ~~~l~~~~~~il~~l~~-~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
..++.+.|..+|..|.+ ++.+|||..||++..+++||||++|++||||+||++||+++. |.++.+|.+||+|||.|
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQ---YQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHH
Confidence 45788899999999988 789999999999986669999999999999999999999999 99999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016104 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
|+.||+++|.+|.+|..|++.|++.|..++
T Consensus 86 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 86 AWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998764
No 11
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=5.8e-28 Score=206.82 Aligned_cols=104 Identities=27% Similarity=0.415 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhc
Q 016104 102 QELKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 175 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~L 175 (395)
..+.+.|..||+.|++++ .+++|+.||+... +||||++|++||||+||++||+++. |.++++|.+||+|
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~l 86 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLGDLEKDVML 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTC---CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHHHHH
Confidence 357889999999999986 6999999999887 9999999999999999999999999 9999999999999
Q ss_pred hhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 176 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 176 If~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
||.||++||+++|.+|.+|..|++.|++.|+++++
T Consensus 87 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 87 LCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999998764
No 12
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=4.8e-28 Score=215.06 Aligned_cols=108 Identities=32% Similarity=0.611 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016104 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
..+...|..||..|++++.+|||+.||++..+++||||++|++||||+||++||+++. |.++++|.+||+|||.||+
T Consensus 31 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 31 NQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNY---YWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 3455677889999999999999999999987779999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 016104 182 KYNDERDDVHVMAKSLLEKFEEKWLQLLPKV 212 (395)
Q Consensus 182 ~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (395)
+||+++|.||.+|..|+++|++.|.++.+..
T Consensus 108 ~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 138 (154)
T 4alg_A 108 IYNKPTDDIVLMAQTLEKIFLQKVASMPQEE 138 (154)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTSCSSC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCCchh
Confidence 9999999999999999999999999886543
No 13
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.95 E-value=9.1e-28 Score=203.91 Aligned_cols=106 Identities=28% Similarity=0.354 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016104 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
....+...|..||+.|++++.+++|..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.|
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNND---YQSIEELKDNFKLMCTN 79 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTS---CCSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999876 9999999999999999999999999 99999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
|+.||+++|.+|.+|..|++.|++.|..+.-
T Consensus 80 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 80 AMIYNKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp HHHTSCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987653
No 14
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.95 E-value=6.3e-28 Score=216.79 Aligned_cols=108 Identities=25% Similarity=0.385 Sum_probs=98.7
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhh
Q 016104 99 RRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (395)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~ 178 (395)
....+|...|..||..|++++.++||..||++..+++||||++|++||||+||++||.++. |.++.+|.+||+|||.
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~Dv~Lif~ 93 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQ---YAYPSEFVKDVQLIFD 93 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHH
Confidence 3445788999999999999999999999999886679999999999999999999999999 9999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016104 179 NAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 179 Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
||++||+++|.||.+|..|+++|++.|.++.
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 94 NCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999998874
No 15
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=204.65 Aligned_cols=101 Identities=26% Similarity=0.350 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016104 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
.+...|..||..|++|+.+++|..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||+.
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~ 81 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYR---YLNFDDFEEDFNLIVSNCLK 81 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016104 183 YNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
||+++|.+|.+|..|++.|+..|.++
T Consensus 82 yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 82 YNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
No 16
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=208.19 Aligned_cols=105 Identities=30% Similarity=0.518 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhC--CCCCCCCCHHHHHHHHhchhhhh
Q 016104 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDG--KDGTGYRNVREIYADVRLVFKNA 180 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~--~~~~~Y~s~~ef~~Dv~LIf~Na 180 (395)
..++.|..||..|++|+.+++|..||+. . +||||++|++||||+||++||++ +. |.++++|.+||+|||.||
T Consensus 20 ~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmDL~tI~~kL~~~~~~---Y~s~~ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 20 IDKRKCERLLLFLYCHEMSLAFQDPVPL-T--VPDYYKIIKNPMDLSTIKKRLQEDYSM---YSKPEDFVADFRLIFQNC 93 (135)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHHSSSCC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCcc-c--CCCHHHHcCCCCCHHHHHHHHhccccC---CCCHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999997 3 99999999999999999999998 47 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhCcCch
Q 016104 181 MKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVM 213 (395)
Q Consensus 181 ~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~~ 213 (395)
++||+++|.||.+|..|+..|++.|.++++...
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999999988654
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=1.5e-27 Score=205.85 Aligned_cols=105 Identities=25% Similarity=0.394 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHcCC-------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHH
Q 016104 101 MQELKRQFAAIFRQITQHK-------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADV 173 (395)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~-------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv 173 (395)
...+.+.|..||+.|++++ .+++|+.||+... +||||++|++||||+||++||.++. |.++.+|.+||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv 83 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLNDLEKDV 83 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHH
Confidence 3468889999999999875 5899999999877 9999999999999999999999999 99999999999
Q ss_pred hchhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 174 RLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 174 ~LIf~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
+|||.||++||+++|.+|.+|..|+..|++.|..+..
T Consensus 84 ~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 84 MLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999988743
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=1.5e-27 Score=204.51 Aligned_cols=103 Identities=22% Similarity=0.410 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHc------CCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhc
Q 016104 102 QELKRQFAAIFRQITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 175 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~------~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~L 175 (395)
..+.+.|..|++.|.. |+.+++|..||+... +||||++|++||||+||++||.++. |.++.+|.+||+|
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~l 88 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANK---YQDIDSMVEDFVM 88 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 3577889999999998 567899999999887 9999999999999999999999999 9999999999999
Q ss_pred hhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016104 176 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 176 If~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
||.||+.||+++|.+|.+|..|++.|++.|+++.
T Consensus 89 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 89 MFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998874
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=3e-27 Score=205.40 Aligned_cols=106 Identities=26% Similarity=0.440 Sum_probs=100.2
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchh
Q 016104 98 GRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 98 ~~~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf 177 (395)
..++..+...|..||+.|++|+.+++|..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||
T Consensus 8 ~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~ 82 (135)
T 3rcw_A 8 ELRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQG---YKNLHEFEEDFDLII 82 (135)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Confidence 34455688899999999999999999999999987 9999999999999999999999999 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016104 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
.||+.||+++|.+|.+|..|++.|++.|.+.
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 83 DNCMKYNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999766
No 20
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.94 E-value=1.9e-27 Score=204.27 Aligned_cols=106 Identities=26% Similarity=0.349 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhc
Q 016104 102 QELKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 175 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~L 175 (395)
..+...|..|++.|..+. .+|||..||+... +||||++|++||||+||++||.++. |.++++|.+||+|
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~l 82 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGY---YKTVEAFDADMLK 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 456778888888888865 5999999999987 9999999999999999999999999 9999999999999
Q ss_pred hhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 016104 176 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKV 212 (395)
Q Consensus 176 If~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (395)
||.||+.||+++|.+|.+|..|++.|++.|.++.+.+
T Consensus 83 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 83 VFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876543
No 21
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.94 E-value=3.3e-27 Score=202.14 Aligned_cols=100 Identities=28% Similarity=0.396 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016104 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
.+...|..|+..|.+++.+++|..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.||+.
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~~ 87 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANE---YKSVTEFKADFKLMCDNAMT 87 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCC---CCCHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHh
Q 016104 183 YNDERDDVHVMAKSLLEKFEEKWLQ 207 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~~~~ 207 (395)
||+++|.+|.+|..|++.|++.|.+
T Consensus 88 yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 88 YNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998843
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=3.8e-27 Score=199.66 Aligned_cols=102 Identities=23% Similarity=0.361 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchh
Q 016104 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf 177 (395)
.++.|..|+..|+++. .+++|..||+... +||||++|++||||+||++||+++. |.++++|.+||+|||
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEE---YDDVNLLTADFQLLF 80 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHH
Confidence 5678999999999884 5999999999887 9999999999999999999999999 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
.||+.||+++|.+|.+|..|++.|++.|+++..
T Consensus 81 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 81 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988754
No 23
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.94 E-value=5.5e-27 Score=202.61 Aligned_cols=106 Identities=23% Similarity=0.397 Sum_probs=98.5
Q ss_pred ccHHHHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHH
Q 016104 99 RRMQELKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 172 (395)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~D 172 (395)
.+...+..+|..+++.|..+. .++||..||+... +||||++|++||||+||++||+++. |.++++|.+|
T Consensus 13 ~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~---Y~s~~ef~~D 87 (130)
T 3k2j_A 13 LGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQE---YETLDHLECD 87 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHH
Confidence 345568889999999998865 4999999999887 9999999999999999999999999 9999999999
Q ss_pred HhchhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016104 173 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 173 v~LIf~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
|+|||.||+.||+++|.||.+|..|++.|++.|+++.
T Consensus 88 v~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 124 (130)
T 3k2j_A 88 LNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELA 124 (130)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998773
No 24
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=7.5e-27 Score=199.04 Aligned_cols=103 Identities=24% Similarity=0.370 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHh
Q 016104 101 MQELKRQFAAIFRQITQHKW------AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 174 (395)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~------a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~ 174 (395)
...|...|..+++.|..+.. +++|..||+... +||||++|++||||+||++||.++. |.++.+|.+||+
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~ 80 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGS---YKSIHAMAKDID 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHH
Confidence 34577789999999988766 999999999987 9999999999999999999999999 999999999999
Q ss_pred chhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016104 175 LVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 175 LIf~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
|||.||+.||+++|.+|.+|..|++.|++.|+++
T Consensus 81 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 81 LLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.93 E-value=3.4e-26 Score=203.86 Aligned_cols=104 Identities=26% Similarity=0.486 Sum_probs=92.5
Q ss_pred HHHHHHHHHHH-HHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016104 104 LKRQFAAIFRQ-ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 104 l~~~~~~il~~-l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
+...|..|+.. |+.++.+|||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||++
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 33344444443 566889999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 016104 183 YNDERDDVHVMAKSLLEKFEEKWLQLLPKV 212 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (395)
||+++|.||.+|..|...|+..|.++...+
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHL 134 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875443
No 26
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.93 E-value=6.4e-26 Score=200.42 Aligned_cols=105 Identities=26% Similarity=0.438 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcC-------CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhh
Q 016104 106 RQFAAIFRQITQH-------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (395)
Q Consensus 106 ~~~~~il~~l~~~-------~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~ 178 (395)
.+|..|+..|.++ +.+++|+.||+... +||||++|++||||+||++||+++. |.++++|.+||+|||.
T Consensus 27 ~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 27 QRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDK---YAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHH
Confidence 3566666666554 45999999999987 9999999999999999999999999 9999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHhhCcCchHH
Q 016104 179 NAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 215 (395)
Q Consensus 179 Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~~~~ 215 (395)
||+.||+++|.||.+|..|++.|++.|.++.+...++
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 9999999999999999999999999999998765443
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=1e-25 Score=203.32 Aligned_cols=101 Identities=31% Similarity=0.562 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016104 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
.....|..||..|..|+.++||+.||++.. +||||++|++||||+||++||+++. |.++++|.+||+|||.||++
T Consensus 72 ~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~ 146 (174)
T 2ri7_A 72 KDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTKIFDNCRY 146 (174)
T ss_dssp HHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016104 183 YNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
||+++|.+|.+|..|+++|+++|+.+
T Consensus 147 yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 147 YNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999765
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.92 E-value=3.8e-25 Score=191.01 Aligned_cols=103 Identities=28% Similarity=0.441 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016104 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
.+..+...|..++..|..|+.++||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.|
T Consensus 7 ~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~N 81 (130)
T 3dai_A 7 TFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHK---YLTVKDYLRDIDLICSN 81 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHH
Confidence 355677789999999999999999999999987 9999999999999999999999999 99999999999999999
Q ss_pred hcccCCCCCHH----HHHHHHHHHHHHHHHHh
Q 016104 180 AMKYNDERDDV----HVMAKSLLEKFEEKWLQ 207 (395)
Q Consensus 180 a~~YN~~~S~v----~~~A~~L~~~Fe~~~~~ 207 (395)
|+.||+++|++ +.+|..|++.+...+..
T Consensus 82 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~ 113 (130)
T 3dai_A 82 ALEYNPDRDPGDRLIRHRACALRDTAYAIIKE 113 (130)
T ss_dssp HHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999977 68888888888888853
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.92 E-value=1.9e-25 Score=203.55 Aligned_cols=103 Identities=31% Similarity=0.538 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhC--CCCCCCCCHHHHHHHHhchhhh
Q 016104 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDG--KDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~--~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
..+.+.|..||..|+.|+.+++|..||+.. +||||++|++||||+||++||++ +. |.++.+|.+||+|||.|
T Consensus 80 ~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~---Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 80 PIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSM---YSKPEDFVADFRLIFQN 153 (184)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCS---CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHH
Confidence 456779999999999999999999999864 89999999999999999999998 57 99999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
|++||+++|.||.+|..|+.+|++.|++++|
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999876
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.91 E-value=2.2e-24 Score=207.33 Aligned_cols=105 Identities=25% Similarity=0.501 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016104 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
..|...|..||..|.+|+.++||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||+
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~ 87 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNSA 87 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCC---CCCHHHHHHHHHHHHhhhh
Confidence 3688899999999999999999999999998 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhCcC
Q 016104 182 KYNDERDDVHVMAKSLLEKFEEKWLQLLPK 211 (395)
Q Consensus 182 ~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~ 211 (395)
+||+++|.||.+|..|...|++.|.++...
T Consensus 88 ~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~ 117 (265)
T 3uv5_A 88 TYNGPKHSLTQISQSMLDLCDEKLKEKEDK 117 (265)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999887443
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=1.7e-24 Score=208.10 Aligned_cols=172 Identities=19% Similarity=0.326 Sum_probs=121.8
Q ss_pred HHHHHHHHH-----HHHHHHhhhhhhhhccCCCCCCCCCCCchhhhccccCCCCC--chhhhhhhhhhhhHh-----hhc
Q 016104 32 TIDDILQKV-----TQLEQKLNDVEQFYLTKDNNQPNTSKSISIAKEKLKDRHVA--SIEKQQQDAFHREEA-----AGR 99 (395)
Q Consensus 32 ~l~~i~~k~-----~~le~~~~~~~~~~~~~~~~~~~~~~g~s~~k~~~r~r~~~--~~kk~~~~~~~~e~~-----~~~ 99 (395)
.|..|+.++ ..+++-+.++..++.++..+ +.+++.++..+..-...- ..+.........+.. ...
T Consensus 56 dL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y---N~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ek~i~p~~dd~ 132 (265)
T 3uv5_A 56 DLQTLRENVRKRLYPSREEFREHLELIVKNSATY---NGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDD 132 (265)
T ss_dssp CHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSTTTTCH
T ss_pred cHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhc---CCCCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccc
Confidence 345555555 34666777788888888777 556665555332211100 000000000000000 001
Q ss_pred cHHHHHHHHHHHHHH-HHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhh
Q 016104 100 RMQELKRQFAAIFRQ-ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (395)
Q Consensus 100 ~~~~l~~~~~~il~~-l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~ 178 (395)
....+...|..++.+ ++.|+.+|||+.||++.. +||||++|++||||+||++||.++. |.++.+|..||+|||.
T Consensus 133 ~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~lif~ 207 (265)
T 3uv5_A 133 DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILA 207 (265)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHH
Confidence 112233345555543 778899999999999988 9999999999999999999999999 9999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHhhCcC
Q 016104 179 NAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 211 (395)
Q Consensus 179 Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~ 211 (395)
||+.||+++|.||.+|..|+..|+..|.++...
T Consensus 208 Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 208 NSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEH 240 (265)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887543
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.90 E-value=3.6e-24 Score=198.67 Aligned_cols=108 Identities=30% Similarity=0.528 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016104 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
....+.|..||..|++|+.+++|+.||+. . +||||++|++||||+||++||+++.++.|.++.+|.+||+|||.||+
T Consensus 80 ~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~ 156 (207)
T 3u5n_A 80 PVDQRKCERLLLYLYCHELSIEFQEPVPA-S--IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCE 156 (207)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhhhccCCh-h--hccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999987 3 99999999999999999999997311229999999999999999999
Q ss_pred ccCC-----------------CCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 016104 182 KYND-----------------ERDDVHVMAKSLLEKFEEKWLQLLPKV 212 (395)
Q Consensus 182 ~YN~-----------------~~S~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (395)
+||+ ++|.++.+|..|+.+|+++|.+++|..
T Consensus 157 ~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 157 RFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999 999999999999999999999999853
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=7.9e-24 Score=183.04 Aligned_cols=100 Identities=28% Similarity=0.492 Sum_probs=92.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016104 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
.+.+|...|..|+..|+.|+.++||..| +||||++|++||||+||+.||.++. |.++.+|.+||+|||.|
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~~f~~D~~Li~~N 78 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHN---YLTAKDFLKDIDLICSN 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTC---CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHH
Confidence 4557778999999999999999999998 7999999999999999999999999 99999999999999999
Q ss_pred hcccCCCCCH----HHHHHHHHHHHHHHHHHhhC
Q 016104 180 AMKYNDERDD----VHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 180 a~~YN~~~S~----v~~~A~~L~~~Fe~~~~~~~ 209 (395)
|+.||+++|+ ++.+|..|++.|...++.-+
T Consensus 79 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l 112 (131)
T 2dkw_A 79 ALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAEL 112 (131)
T ss_dssp HHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999995 57899999999999885443
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=198.24 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhcc--CCCChHHHHHHHhCC---CCCCCCCHHHHHHHHhchh
Q 016104 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIE--KPMDFSTIKNKMDGK---DGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk--~PMDL~tIk~kL~~~---~~~~Y~s~~ef~~Dv~LIf 177 (395)
..++.|..||..|+.|+.+|||++||+ |+||++|+ +||||+||++||+++ . |.++++|++||+|||
T Consensus 76 ~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~---Y~s~~eF~~Dv~Lif 146 (189)
T 2ro1_A 76 ANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPP---YSSPQEFAQDVGRMF 146 (189)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcc---cCCHHHHHHHHHHHH
Confidence 345689999999999999999999997 68999998 899999999999999 7 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 016104 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKV 212 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (395)
+||++|| +++.+|.+|..|+++|+++|+++++..
T Consensus 147 ~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 147 KQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999 588899999999999999999998753
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=3e-23 Score=201.97 Aligned_cols=98 Identities=27% Similarity=0.520 Sum_probs=90.3
Q ss_pred HHHHH-HHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCC
Q 016104 108 FAAIF-RQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDE 186 (395)
Q Consensus 108 ~~~il-~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~ 186 (395)
+..++ ..|+.++.+|||+.||++.. +||||++|++||||+||+.||.++. |.++.+|.+||+|||.||+.||++
T Consensus 174 l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~Li~~Na~~yN~~ 248 (292)
T 3aad_A 174 LDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVKYNGP 248 (292)
T ss_dssp HHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHCCC
Confidence 44444 34788999999999999887 9999999999999999999999999 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCc
Q 016104 187 RDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 187 ~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
+|.+|.+|..|+..|+..|..+..
T Consensus 249 ~s~i~~~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 249 ESQYTKTAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987743
No 36
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.89 E-value=3.4e-24 Score=210.24 Aligned_cols=87 Identities=30% Similarity=0.471 Sum_probs=84.0
Q ss_pred cCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHH
Q 016104 117 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 196 (395)
Q Consensus 117 ~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~ 196 (395)
.|+.+|||+.||++.. +||||+||++||||+||++||.++. |.++.+|.+||+|||.||++||+++|.||.+|..
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~ 251 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 251 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTC---CCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4678999999999987 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 016104 197 LLEKFEEKWLQL 208 (395)
Q Consensus 197 L~~~Fe~~~~~~ 208 (395)
|+..|++.|++.
T Consensus 252 L~~~f~~~~~~~ 263 (311)
T 2r0y_A 252 LTNYFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 37
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=204.26 Aligned_cols=102 Identities=25% Similarity=0.517 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016104 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
..+...|..||..|++|+.++||+.||++.. +||||++|++||||+||++||+++. |.++.+|.+||+|||.||+
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~---Y~s~~~f~~D~~li~~Na~ 120 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNSA 120 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCC---cCCHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999987 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016104 182 KYNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 182 ~YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
+||+++|++|.+|..|.+.|++.|..+
T Consensus 121 ~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 121 TYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999888665
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=1.7e-22 Score=202.12 Aligned_cols=87 Identities=30% Similarity=0.471 Sum_probs=83.9
Q ss_pred cCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHH
Q 016104 117 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 196 (395)
Q Consensus 117 ~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~ 196 (395)
.|+.+|||+.||++.. +||||+||++||||+||++||.++. |.++.+|.+||+|||.||++||+++|.||.+|..
T Consensus 227 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~ 301 (361)
T 2r10_A 227 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 301 (361)
T ss_dssp SSCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTC---CCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3678999999999987 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 016104 197 LLEKFEEKWLQL 208 (395)
Q Consensus 197 L~~~Fe~~~~~~ 208 (395)
|+.+|+..|.+.
T Consensus 302 L~~~f~~~~~~~ 313 (361)
T 2r10_A 302 LTNYFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.81 E-value=8e-21 Score=189.93 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCC-CHHHHHHHHhchhhh
Q 016104 103 ELKRQFAAIFRQITQH--KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYR-NVREIYADVRLVFKN 179 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~--~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~-s~~ef~~Dv~LIf~N 179 (395)
.+...|..+|+.+... ..+++|+.||+... +||||+||++||||+||++|| .. |. ++++|.+||+|||.|
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~---y~~~~~~f~~D~~li~~N 150 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YE---YEDGPSNFLLDVELLTKN 150 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CC---STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hc---cCCCHHHHHHHHHHHHHH
Confidence 3445677888887553 46899999999988 999999999999999999998 34 55 899999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016104 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
|++||+++|.||.+|..|+++|+..|.+.
T Consensus 151 a~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 151 CQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999765
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.81 E-value=1.8e-20 Score=183.87 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=83.2
Q ss_pred HHHHHHHHHHc--CCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCC-CHHHHHHHHhchhhhhccc
Q 016104 107 QFAAIFRQITQ--HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYR-NVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 107 ~~~~il~~l~~--~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~-s~~ef~~Dv~LIf~Na~~Y 183 (395)
.|..+|..+.. +..+++|+.||+... +||||+||++||||+||++|| .. |. ++++|.+||+|||.||++|
T Consensus 32 ~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~---y~~s~~~f~~D~~li~~Na~~y 104 (311)
T 2r0y_A 32 FISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YE---YEDGPSNFLLDVELLTKNCQAY 104 (311)
T ss_dssp HHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CC---STTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hc---ccCCHHHHHHHHHHHHHHHHHc
Confidence 34444444443 347999999999988 999999999999999999998 44 66 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 016104 184 NDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
|+++|.||.+|..|+++|++.|.+.
T Consensus 105 N~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 105 NEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999775
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=149.01 Aligned_cols=97 Identities=15% Similarity=0.287 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchh
Q 016104 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf 177 (395)
+...+..|+..++.+. .+.+|+..|+.. |+||. +.||+|.+|++||..+. |.++++|..||.+||
T Consensus 8 lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~---Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 8 IQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNR---YRRLDLFQEHMFEVL 78 (147)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTC---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Confidence 4557788898998875 589999998876 78998 99999999999999999 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016104 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
.||++||.+||+||.+|..|+.+|.+.+.++.
T Consensus 79 ~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~ 110 (147)
T 3iu6_A 79 ERARRMNRTDSEIYEDAVELQQFFIKIRDELC 110 (147)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999997764
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=7.3e-18 Score=136.40 Aligned_cols=73 Identities=29% Similarity=0.563 Sum_probs=69.3
Q ss_pred hhhcCCCHHHHHHHHHHhccCChHhHHHHHHHHHhcCCCCC-CCCCeEEEeCCCCCHHHHHHHHHHHHHHHHhc
Q 016104 265 QKCRKMSTEEKKNLGTALTRLSPEDLCKALEIVAENNPSFH-ATAQEVDLDMDAQSELTLWRLKVFVQESLKAA 337 (395)
Q Consensus 265 ~~~r~mt~eEK~~L~~~I~~L~~e~L~~vi~II~~~~P~~~-~~~~evElDid~L~~~TL~~L~~yV~~~L~~~ 337 (395)
..+++||++||++|+.+|+.||+++|.+||+||++++|.+. ...+|||||||.|++.|||+|++||..||+.+
T Consensus 13 ~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 13 DKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp SSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 35799999999999999999999999999999999999986 68899999999999999999999999999876
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.56 E-value=3.8e-15 Score=135.30 Aligned_cols=98 Identities=15% Similarity=0.289 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016104 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
.++.+.+..||..|..++.++||+.+. ++.||||.||++||+.+. |.++.+|.+||.|||.||.
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y~-------------~k~PmDL~~i~kKl~~~~---Y~s~~eF~~Dv~lIf~n~~ 137 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRYR-------------QQQPLDLEGVKRKMDQGN---YTSVLEFSDDIVKIIQAAI 137 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTCC-------------C--CCSHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhhh-------------hcCCccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHh
Confidence 356677899999999999999998732 599999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhCcCchHH
Q 016104 182 KYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 215 (395)
Q Consensus 182 ~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~~~~ 215 (395)
.||.+.+.+..++..|+.+|++.+.+++|++...
T Consensus 138 ~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~ 171 (183)
T 3lqh_A 138 NSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVK 171 (183)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGG
T ss_pred hccCCChhhhhhhhHHHHHHHHHHHHHCCCCCcc
Confidence 9999999999999999999999999999987654
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=96.03 E-value=0.0078 Score=50.25 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=54.0
Q ss_pred cCCCHHHHHHHHHHhccCC-hHhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q 016104 268 RKMSTEEKKNLGTALTRLS-PEDLCKALEIVAENNPSFHATAQEVDLDMDAQSELTLWRLKVFVQ 331 (395)
Q Consensus 268 r~mt~eEK~~L~~~I~~L~-~e~L~~vi~II~~~~P~~~~~~~evElDid~L~~~TL~~L~~yV~ 331 (395)
.+--.+|.+.|...|..|. .+.|.+|+++|.+. ..+...+..+.+|+.+|+..|+++|+.|+.
T Consensus 57 ~~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 57 DKAYLDELVELHRRLMTLRERHILQQIVNLIEET-GHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp SCSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-CceeeecccccceeeccCHHHHHHHHHHHH
Confidence 3445588999999999995 56799999999985 366788999999999999999999999974
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.03 E-value=16 Score=25.89 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016104 21 GDTVEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (395)
Q Consensus 21 ~~~~~~~~~~~~l~~i~~k~~~le~~~~~~~~ 52 (395)
-.+++++.|++++.+++.+++.|...+.+...
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999988776543
Done!