BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016105
(395 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2
Length = 345
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 84/130 (64%), Gaps = 3/130 (2%)
Query: 256 TSHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVA 313
S LDG+ WE+ VVN+P NAF LPGGK+ +F+ +L D IAT++ HE AH +A
Sbjct: 151 NSLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHEFAHQLA 210
Query: 314 RHAAEGITKNLWFAILQLILYQFVMPDVVNT-MSTLFLRLPFSRKMEMEADYIGLLLIAS 372
RH AE ++K +++L L+LY +N + FLR+P SR+ME EADYIGL++++
Sbjct: 211 RHTAENLSKAPIYSLLGLVLYTVTGAHAINNILLDGFLRMPASRQMETEADYIGLMIMSR 270
Query: 373 SGYDPRVAPK 382
+ + P+ + K
Sbjct: 271 ACFQPQESIK 280
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 109 GAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRV 168
G Y +L+ P + R+ F+ +S+ +E +G ++ + + +ILP HP S+++
Sbjct: 73 GGCSLFYYTHLDKAPVSDRSRFIWVSRPLELTIGNYTYKSIWRQTQQEILPPQHPLSIKI 132
Query: 169 RLIAKDIIEA 178
I I+EA
Sbjct: 133 ENIFMKIVEA 142
>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1
Length = 337
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 9/144 (6%)
Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
A S + L WE+ V+ +P NAF LPGGK+ VF G+L + + +A ++ HE AH VAR
Sbjct: 144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHETAHQVAR 203
Query: 315 HAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLR----LPFSRKMEMEADYIGLLLI 370
H+AE I A+ ++ D+ +S L LPFSRKME EADYIGL+L+
Sbjct: 204 HSAEKIAFTR--AVSCIVFLAAASLDLSGQLSHFLLNFGLLLPFSRKMETEADYIGLMLM 261
Query: 371 ASSGYDPRVAPKFTRSWVKLQAIQ 394
+ + +DP A W ++ A +
Sbjct: 262 SQACFDPNAAKTL---WERMDAAE 282
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 96 NPRT-----VFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMK 150
NPR +F ++ G G + Y +LE VP + R F +S E+++ + ++++
Sbjct: 61 NPRDKRFQWIFGALIAGGGVY---YFTHLEYVPISNRRRFNDVSLDFEKRMAQDAYKEVM 117
Query: 151 AAFKGKILPAIHPDSVRVRLIAKDII 176
+ + ++LP+ HP ++ V + K II
Sbjct: 118 SEYGDRMLPSYHPTTLYVSRVLKRII 143
>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1
PE=1 SV=1
Length = 524
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318
+ +NW + VV+ P+INAF LP G++ VFTG L +++ ++GHE+AHAV HAAE
Sbjct: 280 ISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAE 339
Query: 319 --GITKNLWF-AILQLILYQFVMPD---------VVNTMSTLFLRLPFSRKMEMEADYIG 366
G+ L F ++ L + + P + + + P+SRK+E EAD IG
Sbjct: 340 KAGMVHLLDFLGMIFLTMIWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIG 399
Query: 367 LLLIASSGYDPRVAPKFTRSWVKLQAIQS 395
LLL A + D R + F W +++ + S
Sbjct: 400 LLLAAKACADIRASSVF---WQQMEFVDS 425
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 88 RGPRKWLQ----------------NPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFV 131
RG RKW Q N +F+ + F+ Y +LE P T R+ +
Sbjct: 167 RGIRKWWQALPPNKKEVVKENIRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPITGRSKLL 226
Query: 132 LLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEA 178
LL K R L E +++ FK +L + V+ + +IE
Sbjct: 227 LLGKEQFRLLSELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIEC 273
>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2
SV=2
Length = 523
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT 321
+NW + VV+ P INAF LP G++ VFTGLL +++ ++GHE+AHAV HAAE +
Sbjct: 283 INWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTDIHQLSFLLGHEIAHAVLEHAAEKAS 342
Query: 322 KNLWFAILQLILYQF---VMPD---------VVNTMSTLFLRLPFSRKMEMEADYIGLLL 369
L LI + P + + + P+SR +E EAD IGL L
Sbjct: 343 LVHLLDFLGLIFLTTIWAICPRDSLALLGQWIQSKLQEFLFDRPYSRTLEAEADRIGLQL 402
Query: 370 IASSGYDPRVAPKFTRSWVKLQAIQS 395
A + D R + F W +++ +S
Sbjct: 403 AAKACVDVRASSVF---WQQMEFAES 425
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 88 RGPRKWLQ----------------NPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFV 131
RG RKW Q N +F+ + F+ Y +LE P T R+ +
Sbjct: 167 RGIRKWWQALPPNKKELFKESLRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPVTGRSKLL 226
Query: 132 LLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQ 180
+L K R L E +++ FK +L V V+ + +IE Q
Sbjct: 227 ILGKEHFRLLSELEYEAWMEEFKNDMLTEKDARYVAVKAVVHHLIECNQ 275
>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus
GN=Oma1 PE=3 SV=1
Length = 504
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT 321
+NW V VV+ P +NAF LP G++ VFTGLL +++ ++GHE+AHAV HAAE +
Sbjct: 262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHEIAHAVLGHAAEKAS 321
Query: 322 KNLWFAILQLILYQF---VMPD---------VVNTMSTLFLRLPFSRKMEMEADYIGLLL 369
L +I + P + + + P+SR +E EAD IGL L
Sbjct: 322 LVHLLDFLGMIFLTMIWAICPRDSLAVLGQWIQSKLQEYMFDRPYSRTLEAEADKIGLQL 381
Query: 370 IASSGYDPRVAPKF 383
A + D R + F
Sbjct: 382 AAKACVDVRASSVF 395
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 111 FITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRL 170
F+ Y +LE P T R+ +L+ K R L + +++ FK +LP P + V+
Sbjct: 185 FVVFYFTHLEVSPVTGRSKLLLVGKEHFRLLSDLEYEVWMEEFKNDLLPEEDPRYLTVKK 244
Query: 171 IAKDIIEALQ 180
+ + + Q
Sbjct: 245 VVYHLTQCNQ 254
>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1
PE=2 SV=1
Length = 521
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITK 322
NW V VV+ P +NAF LP G++ +FTGLL +++ ++GHE+AHAV HAAE +
Sbjct: 280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHEIAHAVLGHAAEKASL 339
Query: 323 NLWFAILQLILYQF---VMPD---------VVNTMSTLFLRLPFSRKMEMEADYIGLLLI 370
L +I + P + + + P+SR +E EAD +GL L
Sbjct: 340 VHLLDFLGMIFLTMIWAICPRDSLAVLGQWIQSKLQEYMFDRPYSRTLEAEADKVGLQLA 399
Query: 371 ASSGYDPRVAPKF 383
A + D R + F
Sbjct: 400 AKACADVRASSVF 412
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 88 RGPRKWLQ----NPRTVF--------IVVVIGSGAF----ITLYLGNLETVPYTKRTHFV 131
RG RKW Q N + +F +++G AF + Y +LE P T R+ +
Sbjct: 163 RGIRKWWQALPPNKKELFKDSVRKNKWRLLLGLSAFGLLFVVFYFTHLEVSPVTGRSKLL 222
Query: 132 LLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVR 169
L+ K R L + +++ FK +LP P + V+
Sbjct: 223 LVGKEHFRLLSDLEYEVWMEEFKNDLLPERDPRYLTVK 260
>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1
PE=3 SV=1
Length = 478
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 257 SHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316
+ + + W V VV+ P +NAF LP G+I VFTG+L ++ I+GHE+AHA+ HA
Sbjct: 247 AEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGMLNAVTDIHQLTFILGHEMAHALIGHA 306
Query: 317 AEGITKN-------------LWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEAD 363
AE + + +W + L + LF R PFSRK+E EAD
Sbjct: 307 AEQASLSHVVELLSLVLLTAIWAVCPRDSLAALGHWIQGKLVQFLFDR-PFSRKLEAEAD 365
Query: 364 YIGLLLIASSGYDPRVAPKF 383
+GL + A + D R P F
Sbjct: 366 QVGLQMAAKACADVRAGPVF 385
>sp|Q8ZCC3|Y3069_YERPE TPR repeat-containing protein YPO3069/y1412/YP_2691 OS=Yersinia
pestis GN=YPO3069 PE=4 SV=1
Length = 486
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 268 VVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN---- 323
+VN INAF GG +V+ + L + ++E+A+++ HE++H RH A + +
Sbjct: 96 LVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQRLA 155
Query: 324 --LWFAILQLILYQFVMPDVVNTMSTLFLRLP--------FSRKMEMEADYIGLLLIASS 373
W +L IL P M+ L L F++ E EAD IG+ ++ S
Sbjct: 156 PLTWVGVLGSILLTMASPQA--GMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRS 213
Query: 374 GYDPRVAPKF 383
G+DP+ P F
Sbjct: 214 GFDPQAMPNF 223
>sp|P66950|YFGC_SALTY TPR repeat-containing protein YfgC OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=yfgC PE=4 SV=1
Length = 487
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 257 SHLDGLN--WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
SH D + + ++N INAF GG +V+ + L + ++++A+++ HE++H R
Sbjct: 85 SHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQR 144
Query: 315 HAAEGITKN------LWFAILQLILYQFVMPDVVNTMSTLFL------RLPFSRKMEMEA 362
H A + W L IL P T L + F+++ E EA
Sbjct: 145 HLARAMEDQKRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEA 204
Query: 363 DYIGLLLIASSGYDPRVAPKF 383
D IG+ ++ +G+DP+ P F
Sbjct: 205 DRIGIQVLQRAGFDPQAMPSF 225
>sp|P66951|YFGC_SALTI TPR repeat-containing protein YfgC OS=Salmonella typhi GN=yfgC PE=4
SV=1
Length = 487
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 257 SHLDGLN--WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
SH D + + ++N INAF GG +V+ + L + ++++A+++ HE++H R
Sbjct: 85 SHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQR 144
Query: 315 HAAEGITKN------LWFAILQLILYQFVMPDVVNTMSTLFL------RLPFSRKMEMEA 362
H A + W L IL P T L + F+++ E EA
Sbjct: 145 HLARAMEDQKRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEA 204
Query: 363 DYIGLLLIASSGYDPRVAPKF 383
D IG+ ++ +G+DP+ P F
Sbjct: 205 DRIGIQVLQRAGFDPQAMPSF 225
>sp|P66949|YFGC_SHIFL TPR repeat-containing protein YfgC OS=Shigella flexneri GN=yfgC
PE=4 SV=1
Length = 487
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN 323
+ ++N INAF GG +V+ + L + ++++A+++ HE++H RH A +
Sbjct: 94 FHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQ 153
Query: 324 ------LWFAILQLILYQFVMPDVVNTMSTLFL------RLPFSRKMEMEADYIGLLLIA 371
W L IL P T L + F+++ E EAD IG+ ++
Sbjct: 154 QRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQ 213
Query: 372 SSGYDPRVAPKF 383
SG+DP+ P F
Sbjct: 214 RSGFDPQAMPTF 225
>sp|P66948|YFGC_ECOLI TPR repeat-containing protein YfgC OS=Escherichia coli (strain K12)
GN=yfgC PE=4 SV=1
Length = 487
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN 323
+ ++N INAF GG +V+ + L + ++++A+++ HE++H RH A +
Sbjct: 94 FHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQ 153
Query: 324 ------LWFAILQLILYQFVMPDVVNTMSTLFL------RLPFSRKMEMEADYIGLLLIA 371
W L IL P T L + F+++ E EAD IG+ ++
Sbjct: 154 QRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQ 213
Query: 372 SSGYDPRVAPKF 383
SG+DP+ P F
Sbjct: 214 RSGFDPQAMPTF 225
>sp|Q8XAD2|YFGC_ECO57 TPR repeat-containing protein YfgC OS=Escherichia coli O157:H7
GN=yfgC PE=4 SV=1
Length = 487
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN 323
+ ++N INAF GG +V+ + L + ++++A+++ HE++H RH A +
Sbjct: 94 FHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQ 153
Query: 324 ------LWFAILQLILYQFVMPDVVNTMSTLFL------RLPFSRKMEMEADYIGLLLIA 371
W L IL P T L + F+++ E EAD IG+ ++
Sbjct: 154 QRNAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQ 213
Query: 372 SSGYDPRVAPKF 383
SG+DP+ P F
Sbjct: 214 RSGFDPQAMPTF 225
>sp|Q9KQ40|Y2164_VIBCH TPR repeat-containing protein VC_2164 OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_2164
PE=4 SV=1
Length = 484
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Query: 274 INAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN------LWFA 327
INAF GG + + +GL H ++++E+A+++ HE+AH RH A + + A
Sbjct: 101 INAFAFFGGYVALHSGLFLHAQSESELASVMAHEIAHVTQRHLARSMEEQARRSPATIAA 160
Query: 328 ILQLILYQFVMPD-----VVNTMS-TLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAP 381
+ +L P+ + TM+ ++ ++ ++R E EAD G+ +A +G+D P
Sbjct: 161 LAGSLLLAIAAPEAGIAAINATMAGSIQGQINYTRSNEKEADRFGIATLAKAGFDANAMP 220
Query: 382 KF 383
+F
Sbjct: 221 QF 222
>sp|P25894|YGGG_ECOLI Uncharacterized metalloprotease YggG OS=Escherichia coli (strain
K12) GN=yggG PE=1 SV=2
Length = 252
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT 321
+N++V + + +NAF + G I V++GL++ TD E+ +IGHE+ H H +G+
Sbjct: 89 VNYKVYMAKD--VNAFAMANGCIRVYSGLMD-MMTDNEVEAVIGHEMGHVALGHVKKGMQ 145
Query: 322 KNLWFAILQL-------ILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSG 374
L +++ I+ + N + + FS++ E EAD L+ G
Sbjct: 146 VALGTNAVRVAAASAGGIVGSLSQSQLGN-LGEKLVNSQFSQRQEAEADDYSYDLLRQRG 204
Query: 375 YDP 377
P
Sbjct: 205 ISP 207
>sp|B0RS04|HTPX_XANCB Protease HtpX OS=Xanthomonas campestris pv. campestris (strain
B100) GN=htpX PE=3 SV=1
Length = 292
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 215 LSENSERGKTEGKWHQEDEILDDKW-VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPV 273
LS+ + T + E ++W V R++ Q G+ EV + + P
Sbjct: 54 LSKFMAKRSTGAQVITEPRTQTERWLVDTVRRQAQAAGIGMP---------EVAIYDGPE 104
Query: 274 INAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAIL 329
INAF + + V TGLL+H R D E ++GHE+A H A G + A+L
Sbjct: 105 INAFATGANRNNALVAVSTGLLQHMRED-EAEAVLGHEIA-----HIANG--DMVTMALL 156
Query: 330 QLILYQFVM 338
Q +L FV+
Sbjct: 157 QGVLNTFVI 165
>sp|Q8P8F0|HTPX_XANCP Protease HtpX OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=htpX PE=3 SV=1
Length = 292
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 215 LSENSERGKTEGKWHQEDEILDDKW-VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPV 273
LS+ + T + E ++W V R++ Q G+ EV + + P
Sbjct: 54 LSKFMAKRSTGAQVITEPRTQTERWLVDTVRRQAQAAGIGMP---------EVAIYDGPE 104
Query: 274 INAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAIL 329
INAF + + V TGLL+H R D E ++GHE+A H A G + A+L
Sbjct: 105 INAFATGANRNNALVAVSTGLLQHMRED-EAEAVLGHEIA-----HIANG--DMVTMALL 156
Query: 330 QLILYQFVM 338
Q +L FV+
Sbjct: 157 QGVLNTFVI 165
>sp|Q4UVN7|HTPX_XANC8 Protease HtpX OS=Xanthomonas campestris pv. campestris (strain
8004) GN=htpX PE=3 SV=1
Length = 292
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 215 LSENSERGKTEGKWHQEDEILDDKW-VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPV 273
LS+ + T + E ++W V R++ Q G+ EV + + P
Sbjct: 54 LSKFMAKRSTGAQVITEPRTQTERWLVDTVRRQAQAAGIGMP---------EVAIYDGPE 104
Query: 274 INAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAIL 329
INAF + + V TGLL+H R D E ++GHE+A H A G + A+L
Sbjct: 105 INAFATGANRNNALVAVSTGLLQHMRED-EAEAVLGHEIA-----HIANG--DMVTMALL 156
Query: 330 QLILYQFVM 338
Q +L FV+
Sbjct: 157 QGVLNTFVI 165
>sp|B2SHQ4|HTPX_XANOP Protease HtpX OS=Xanthomonas oryzae pv. oryzae (strain PXO99A)
GN=htpX PE=3 SV=1
Length = 292
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 22/107 (20%)
Query: 237 DKWVQQS-RKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK----IVVFTGLL 291
++W+ ++ R++ Q G+ EV V + P INAF + + V TGLL
Sbjct: 76 ERWLLETVRRQAQAAGIGMP---------EVAVYDGPEINAFATGANRNNALVAVSTGLL 126
Query: 292 EHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVM 338
+H D E ++GHE+A H A G + A+LQ +L FV+
Sbjct: 127 QHMDQD-EAEAVLGHEIA-----HVANG--DMVTMALLQGVLNTFVI 165
>sp|Q5GZ91|HTPX_XANOR Protease HtpX OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=htpX PE=3 SV=1
Length = 292
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 22/107 (20%)
Query: 237 DKWVQQS-RKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK----IVVFTGLL 291
++W+ ++ R++ Q G+ EV V + P INAF + + V TGLL
Sbjct: 76 ERWLLETVRRQAQAAGIGMP---------EVAVYDGPEINAFATGANRNNALVAVSTGLL 126
Query: 292 EHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVM 338
+H D E ++GHE+A H A G + A+LQ +L FV+
Sbjct: 127 QHMDQD-EAEAVLGHEIA-----HVANG--DMVTMALLQGVLNTFVI 165
>sp|Q2P2A1|HTPX_XANOM Protease HtpX OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
GN=htpX PE=3 SV=1
Length = 292
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 22/107 (20%)
Query: 237 DKWVQQS-RKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK----IVVFTGLL 291
++W+ ++ R++ Q G+ EV V + P INAF + + V TGLL
Sbjct: 76 ERWLLETVRRQAQAAGIGMP---------EVAVYDGPEINAFATGANRNNALVAVSTGLL 126
Query: 292 EHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVM 338
+H D E ++GHE+A H A G + A+LQ +L FV+
Sbjct: 127 QHMDQD-EAEAVLGHEIA-----HVANG--DMVTMALLQGVLNTFVI 165
>sp|P43674|YCAL_ECOLI Uncharacterized metalloprotease YcaL OS=Escherichia coli (strain
K12) GN=ycaL PE=3 SV=3
Length = 254
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316
+N++V + ++ +NA+ + G + V++GL++ D EI ++GHE+ H H+
Sbjct: 93 VNYKVYMTSD--VNAWAMANGCVRVYSGLMD-MMNDNEIEGVLGHELGHVALGHS 144
>sp|B8HNM1|Y1379_CYAP4 UPF0234 protein Cyan7425_1379 OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=Cyan7425_1379 PE=3 SV=1
Length = 163
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 117 GNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDII 176
G +E+V + + L K ++ ++G+ + ++ FK K+ P+I D+VRV +KD +
Sbjct: 83 GKVESVSGNRVQQVIKLRKGIDSEIGKEISKLIRTDFK-KVQPSIQGDAVRVSAKSKDDL 141
Query: 177 EALQRGLKHE 186
+ + + LK E
Sbjct: 142 QEVIQRLKQE 151
>sp|Q8PJX8|HTPX_XANAC Protease HtpX OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=htpX PE=3 SV=1
Length = 292
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 22/107 (20%)
Query: 237 DKWVQQS-RKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK----IVVFTGLL 291
++W+ ++ R++ Q G+ EV V P INAF + + V TGLL
Sbjct: 76 ERWLLETVRRQAQAAGIGMP---------EVAVYEGPEINAFATGANRNNALVAVSTGLL 126
Query: 292 EHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVM 338
++ D E ++GHE+A H A G + A+LQ +L FV+
Sbjct: 127 QNMDQD-EAEAVLGHEIA-----HVANG--DMVTMALLQGVLNTFVI 165
>sp|Q3BSD6|HTPX_XANC5 Protease HtpX OS=Xanthomonas campestris pv. vesicatoria (strain
85-10) GN=htpX PE=3 SV=1
Length = 292
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 22/107 (20%)
Query: 237 DKWVQQS-RKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK----IVVFTGLL 291
++W+ ++ R+ Q G+ EV V + P INAF + + V TGLL
Sbjct: 76 ERWLLETVRRHAQAAGIGMP---------EVAVYDGPEINAFATGANRNDALVAVSTGLL 126
Query: 292 EHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVM 338
++ D E ++GHE+A H A G + A+LQ +L FV+
Sbjct: 127 QNMDQD-EAEAVLGHEIA-----HVANG--DMVTMALLQGVLNTFVI 165
>sp|B8GTV4|HTPX_THISH Protease HtpX OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=htpX
PE=3 SV=1
Length = 295
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 237 DKWVQQS-RKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK----IVVFTGLL 291
++W+ ++ R++ +E G+ EV + N P NAF K + V TGL+
Sbjct: 83 EQWLLETVRRQAREAGIGMP---------EVGIFNSPDPNAFATGMSKNNALVAVSTGLM 133
Query: 292 EHFRTDAEIATIIGHEVAH 310
+ D E+ ++GHEVAH
Sbjct: 134 DRMNAD-EVEAVLGHEVAH 151
>sp|B2FN30|HTPX_STRMK Protease HtpX OS=Stenotrophomonas maltophilia (strain K279a)
GN=htpX PE=3 SV=1
Length = 288
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 265 EVLVVNEPVINAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI 320
EV V P INAF + + V TGLL + D E ++GHE+A H A G
Sbjct: 96 EVAVYEGPEINAFATGANRNNALVAVSTGLLHNMSED-EAEAVLGHEIA-----HVANG- 148
Query: 321 TKNLWFAILQLILYQFVM 338
+ A+LQ +L FV+
Sbjct: 149 -DMITMALLQGVLNTFVI 165
>sp|B4SQB7|HTPX_STRM5 Protease HtpX OS=Stenotrophomonas maltophilia (strain R551-3)
GN=htpX PE=3 SV=1
Length = 288
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 265 EVLVVNEPVINAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI 320
EV V P INAF + + V TGLL + D E ++GHE+A H A G
Sbjct: 96 EVAVYEGPEINAFATGANRNNALVAVSTGLLHNMSED-EAEAVLGHEIA-----HVANG- 148
Query: 321 TKNLWFAILQLILYQFVM 338
+ A+LQ +L FV+
Sbjct: 149 -DMITMALLQGVLNTFVI 165
>sp|Q31F55|HTPX_THICR Protease HtpX OS=Thiomicrospira crunogena (strain XCL-2) GN=htpX
PE=3 SV=1
Length = 298
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 15/80 (18%)
Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNW-EVLVVNEPVINAFCLPGGK----IVVFTGL 290
D++W+ ++ ++ EK G+ EV + NAF K + V TGL
Sbjct: 80 DEQWLVETVRRQAEKA---------GIGMPEVAIYEGAEPNAFATGMTKNSALVAVSTGL 130
Query: 291 LEHFRTDAEIATIIGHEVAH 310
L H R + E+ ++GHEVAH
Sbjct: 131 LRHMRQN-EVEAVLGHEVAH 149
>sp|B0U5X0|HTPX_XYLFM Protease HtpX OS=Xylella fastidiosa (strain M12) GN=htpX PE=3 SV=1
Length = 289
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 265 EVLVVNEPVINAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI 320
EV + P INAF + + V TGLL++ D E ++GHE+A H A G
Sbjct: 96 EVAIYEGPEINAFATGADRNNALVAVSTGLLQNMSQD-EAEAVLGHEIA-----HVANG- 148
Query: 321 TKNLWFAILQLILYQFVM 338
+ A+LQ +L FV+
Sbjct: 149 -DMVTMALLQGVLNTFVI 165
>sp|Q87A36|HTPX_XYLFT Protease HtpX OS=Xylella fastidiosa (strain Temecula1 / ATCC
700964) GN=htpX PE=3 SV=1
Length = 289
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 265 EVLVVNEPVINAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI 320
EV + P INAF + + V TGLL++ D E ++GHE+A H A G
Sbjct: 96 EVAIYEGPEINAFATGADRNNALVAVSTGLLQNMSQD-EAEAVLGHEIA-----HVANG- 148
Query: 321 TKNLWFAILQLILYQFVM 338
+ A+LQ +L FV+
Sbjct: 149 -DMVTMALLQGVLNTFVI 165
>sp|B2IA62|HTPX_XYLF2 Protease HtpX OS=Xylella fastidiosa (strain M23) GN=htpX PE=3 SV=1
Length = 289
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 265 EVLVVNEPVINAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI 320
EV + P INAF + + V TGLL++ D E ++GHE+A H A G
Sbjct: 96 EVAIYEGPEINAFATGADRNNALVAVSTGLLQNMSQD-EAEAVLGHEIA-----HVANG- 148
Query: 321 TKNLWFAILQLILYQFVM 338
+ A+LQ +L FV+
Sbjct: 149 -DMVTMALLQGVLNTFVI 165
>sp|Q2KZ03|HTPX_BORA1 Protease HtpX homolog OS=Bordetella avium (strain 197N) GN=htpX
PE=3 SV=1
Length = 293
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 284 IVVFTGLLEHFRTDAEIATIIGHEVAH 310
+ V TGLLE R + E+A ++GHEVAH
Sbjct: 125 VAVSTGLLESMREE-EVAAVLGHEVAH 150
>sp|Q2RKK7|HTPX_MOOTA Protease HtpX homolog OS=Moorella thermoacetica (strain ATCC 39073)
GN=htpX PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 266 VLVVNEPVINAFCL---PGGKIV-VFTGLLEHFRTDAEIATIIGHEVAH 310
V +V P+ NAF P +V V TGL+E T +E+ ++GHE+ H
Sbjct: 97 VAIVPTPMPNAFATGRNPANAVVAVTTGLMERL-TPSELEAVLGHELTH 144
>sp|B8ETN6|DNLJ_METSB DNA ligase OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=ligA PE=3 SV=1
Length = 700
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 207 AARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEV 266
A R+T RA + SE E++ + + E+ L + +H++ E
Sbjct: 560 ALRETGRAAAPGSEARAEINNIEGVGEVVAEAVADFFAEPHNEEALDALLAHVNPQPMEE 619
Query: 267 LVVNEPVINAFCLPGGKIVVFTGLLEHFRTDA--EIATIIGHEVAHAVAR 314
+V + PV GK VVFTG LE D +A +G +VA +V++
Sbjct: 620 IVSDTPV-------AGKTVVFTGALERMTRDEAKAMAERLGAKVAASVSK 662
>sp|P0C1T0|MMEL1_RAT Membrane metallo-endopeptidase-like 1 OS=Rattus norvegicus GN=Mmel1
PE=1 SV=1
Length = 774
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 242 QSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVF-TGLLE--HFRTD- 297
Q+ K ++ L+ +D W ++ V+NAF P ++VF G+L+ F D
Sbjct: 537 QNLKNNAQRSLKKLREKVDQNLW---IIGAAVVNAFYSPNRNLIVFPAGILQPPFFSKDQ 593
Query: 298 ------AEIATIIGHEVAHA 311
I +IGHE+ H
Sbjct: 594 PQALNFGGIGMVIGHEITHG 613
>sp|Q9PA93|HTPX_XYLFA Protease HtpX OS=Xylella fastidiosa (strain 9a5c) GN=htpX PE=2 SV=1
Length = 289
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 274 INAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAIL 329
INAF + + V TGLL++ D E+ ++GHE+A H A G + A+L
Sbjct: 105 INAFATGADRNNALVAVSTGLLQNMSQD-EVEAVLGHEIA-----HVANG--DMVTMALL 156
Query: 330 QLILYQFVM 338
Q +L FV+
Sbjct: 157 QGVLNTFVI 165
>sp|Q0AAR8|HTPX_ALHEH Protease HtpX OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpX
PE=3 SV=1
Length = 301
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 265 EVLVVNEPVINAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHEVAH 310
EV + + P +NAF + + V TGLL+ D E +IGHE+AH
Sbjct: 106 EVAIYDAPDMNAFATGARRNNSLVAVSTGLLQSMTRD-EAEAVIGHEIAH 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,446,037
Number of Sequences: 539616
Number of extensions: 5781354
Number of successful extensions: 15008
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 14967
Number of HSP's gapped (non-prelim): 70
length of query: 395
length of database: 191,569,459
effective HSP length: 120
effective length of query: 275
effective length of database: 126,815,539
effective search space: 34874273225
effective search space used: 34874273225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)