Query 016107
Match_columns 395
No_of_seqs 154 out of 253
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:51:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 2E-155 3E-160 1189.8 31.9 366 14-395 1-372 (478)
2 PRK11677 hypothetical protein; 64.2 12 0.00027 33.7 4.7 44 23-70 2-45 (134)
3 COG1033 Predicted exporters of 58.1 22 0.00048 40.2 6.3 55 27-81 251-316 (727)
4 TIGR02976 phageshock_pspB phag 54.8 43 0.00093 27.4 5.9 28 23-50 3-30 (75)
5 PF07219 HemY_N: HemY protein 49.9 29 0.00062 29.4 4.4 46 20-65 13-65 (108)
6 PF06305 DUF1049: Protein of u 49.4 53 0.0011 25.0 5.5 47 21-70 18-64 (68)
7 TIGR03144 cytochr_II_ccsB cyto 39.6 1.2E+02 0.0027 29.1 7.6 29 58-86 142-170 (243)
8 PF01578 Cytochrom_C_asm: Cyto 39.5 1E+02 0.0022 28.6 6.8 29 58-86 116-144 (214)
9 PF11044 TMEMspv1-c74-12: Plec 34.8 76 0.0016 23.9 4.0 29 21-49 1-34 (49)
10 PHA03105 EEV glycoprotein; Pro 34.0 48 0.001 31.1 3.5 33 26-58 9-41 (188)
11 PF12801 Fer4_5: 4Fe-4S bindin 33.6 89 0.0019 22.3 4.3 24 23-46 2-25 (48)
12 TIGR00540 hemY_coli hemY prote 26.6 89 0.0019 32.0 4.5 37 20-56 38-81 (409)
13 COG3105 Uncharacterized protei 26.3 1.2E+02 0.0026 27.6 4.6 62 21-86 5-75 (138)
14 PRK10747 putative protoheme IX 25.5 89 0.0019 31.9 4.2 37 20-56 38-81 (398)
15 PF13297 Telomere_Sde2_2: Telo 24.7 39 0.00084 26.7 1.1 14 62-75 16-29 (60)
16 PF12273 RCR: Chitin synthesis 24.4 80 0.0017 27.6 3.2 25 24-57 5-29 (130)
17 PF15050 SCIMP: SCIMP protein 24.4 1.3E+02 0.0028 27.1 4.4 33 23-57 8-40 (133)
18 PF14015 DUF4231: Protein of u 23.8 2.6E+02 0.0056 23.0 6.1 42 24-71 52-93 (112)
19 COG3114 CcmD Heme exporter pro 23.2 1.6E+02 0.0034 23.8 4.2 28 303-331 9-40 (67)
20 PF11742 DUF3302: Protein of u 22.6 3.2E+02 0.007 22.7 6.1 33 42-81 21-53 (78)
21 KOG3643 GABA receptor [Signal 22.4 63 0.0014 34.7 2.4 26 26-51 308-333 (459)
22 KOG4404 Tandem pore domain K+ 21.3 88 0.0019 32.4 3.1 68 172-273 12-82 (350)
23 PRK15135 histidine/lysine/argi 20.3 1.5E+02 0.0032 27.7 4.3 35 24-58 192-226 (228)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=1.6e-155 Score=1189.77 Aligned_cols=366 Identities=54% Similarity=0.950 Sum_probs=344.0
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC
Q 016107 14 EMRSLALTPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPLLAAVEKMKEEMMLLGFISLFLTATSSSISNICIP 93 (395)
Q Consensus 14 ~~rsLe~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICIp 93 (395)
|+||||+|||||||+||+|+|++|+++||++|++||||+|++||+|+|||||+|+|||+|||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCccccCCCCccchhhhcCcccchhhhcccCCccccccccc---cccCccC-CCccccccccchhhHHHHHHHHHH
Q 016107 94 SKFYDSTFAPCTRSEIDEEMENNSSEGRKLMGLLFPHRYRRVLNE---LNKNTCK-EGYEPFVSYEGLEQLHRFIFVMAV 169 (395)
Q Consensus 94 ~~~~~~~mlPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~L~~---~~~~~C~-~GkvpliS~e~lhQLHiFIFVLAv 169 (395)
++ ++++|+||+.++++++.++ ....||+|+. ++.++|+ ||||||+|.|||||||||||||||
T Consensus 81 ~~-~~~~~lPC~~~~~~~~~~~-------------~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV 146 (478)
T PF03094_consen 81 SS-YASTMLPCKPPEESSKEGS-------------SHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAV 146 (478)
T ss_pred hh-HHhcccCCCCccccccccc-------------chhhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHH
Confidence 99 4779999986443221110 0246777762 4577996 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhccccccccccccceeeecccccccccccCCCCCchhHHHHHHHHHHhccCcc
Q 016107 170 THISYSCLTMLLAIVKIHSWRVWEEEAHMDRHDSLTEITRELTIRRQTTFVRYHTSNPLSRNKLLIWVTCFFRQFGRSVV 249 (395)
Q Consensus 170 ~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~~~~~~~~~~~qt~F~r~h~~~~w~~~~~l~w~~~FfrQF~~SV~ 249 (395)
+||+|||+||+||++|||+||+||+|+++++|+..+ ||+|++++||++|+|+|+ ++|++++++.|++|||||||+||+
T Consensus 147 ~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~-d~~r~~~~~qt~F~r~h~-~~w~~~~~~~wi~~FfrQF~~SV~ 224 (478)
T PF03094_consen 147 VHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSN-DPRRFRLTRQTTFVRRHT-SFWSKSPVLSWIVCFFRQFYGSVT 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-CcceeeeecccHHHHhhc-CCcccChhHHhHHHHHHHhhcccc
Confidence 999999999999999999999999999999888555 599999999999999999 679999999999999999999999
Q ss_pred hhhHHHHHHhhhhhcCCC-CCCChHHHHHHHHHhhcchhcccchhHHHHHHHHHHhccCCCchhhhhhhHHHHHHHHHHH
Q 016107 250 RADYLTLRKGFIMNHNLS-PKYDFHSYMIRSMEEEFQRIVGVSGPLWGFVVAFMLFNVKGSNLYFWIAIIPVTLVLLVGS 328 (395)
Q Consensus 250 k~DY~tLR~gFI~~H~~~-~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vviFlLlnv~gw~~yfW~sfiPlil~L~VGt 328 (395)
|+||+|||+|||++|+++ ++|||||||+||||||||+||||||++|++||+|+|+|++|||+|||+||||++++|+|||
T Consensus 225 k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~VGt 304 (478)
T PF03094_consen 225 KSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGT 304 (478)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHHHH
Confidence 999999999999999885 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCc-ccccCCCccccCCchHHHHHHHHHHHHhhHHHHHHHHHHhhcCC
Q 016107 329 KLQHVIATLALENAGITGYFAGA-KLKPRDELFWFNKPELMLSLIHFILFQNAFELASFFWFWVLPLL 395 (395)
Q Consensus 329 KLq~Ii~~la~e~~~~~~~~~g~-~v~p~D~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~~~~ 395 (395)
|||+||++||+|++|++++++|. +|||+|++|||+|||++|+||||||||||||||||+|+||+||.
T Consensus 305 KLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~ 372 (478)
T PF03094_consen 305 KLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGF 372 (478)
T ss_pred HHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999995 68999999999999999999999999999999999999999984
No 2
>PRK11677 hypothetical protein; Provisional
Probab=64.16 E-value=12 Score=33.69 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCchHHHHHHHHHHHH
Q 016107 23 TWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPLLAAVEKMKEEM 70 (395)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 70 (395)
+|..|++++|+.+ ++=.++.+++..= .++++.|.+-||+.|.||
T Consensus 2 ~W~~a~i~livG~---iiG~~~~R~~~~~-~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVVGI---IIGAVAMRFGNRK-LRQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHHHH---HHHHHHHhhccch-hhHHHHHHHHHHHHHHHH
Confidence 4888887766543 3333444443311 135688999999999998
No 3
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=58.06 E-value=22 Score=40.16 Aligned_cols=55 Identities=13% Similarity=0.352 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhcCCc-----hHHHHHHHHHHHHHH------HHHHHHHHH
Q 016107 27 ATVLTVFVVVSLIVERSIHHLSNWLRKTNRK-----PLLAAVEKMKEEMML------LGFISLFLT 81 (395)
Q Consensus 27 A~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kk-----aL~eALeKiK~ELML------LGFISLLLt 81 (395)
....++.++|.+.++.++|...++.+.+++. |+.+|+.|...=.++ +||+||+.+
T Consensus 251 ~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s 316 (727)
T COG1033 251 TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTS 316 (727)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHc
Confidence 3445667788899999999999999887763 677777777766553 799999875
No 4
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=54.75 E-value=43 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 016107 23 TWSVATVLTVFVVVSLIVERSIHHLSNW 50 (395)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~ 50 (395)
.|.+++-..+|+++-..++-.+||..|+
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777778888888999999999873
No 5
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=49.91 E-value=29 Score=29.39 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=34.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH-------HhhHHhhcCCchHHHHHHH
Q 016107 20 LTPTWSVATVLTVFVVVSLIVERSIHH-------LSNWLRKTNRKPLLAAVEK 65 (395)
Q Consensus 20 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkk~~kkaL~eALeK 65 (395)
+|.-|..++++.+++++..++.+++-. +.+|.++++++.-++||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777888888755 5778888888777777765
No 6
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.43 E-value=53 Score=25.02 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=27.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCchHHHHHHHHHHHH
Q 016107 21 TPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPLLAAVEKMKEEM 70 (395)
Q Consensus 21 TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 70 (395)
.|-+.+..+|++ +..++=-.+.....+=.|++.+.+.+.+++.+.|+
T Consensus 18 ~pl~l~il~~f~---~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFL---LGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544444444 44444444444444444555577888888888886
No 7
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=39.57 E-value=1.2e+02 Score=29.13 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016107 58 PLLAAVEKMKEEMMLLGFISLFLTATSSS 86 (395)
Q Consensus 58 aL~eALeKiK~ELMLLGFISLLLtv~q~~ 86 (395)
|=.+.+||+--.....||+-|.+++..+.
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~ 170 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGA 170 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999987663
No 8
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=39.54 E-value=1e+02 Score=28.64 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016107 58 PLLAAVEKMKEEMMLLGFISLFLTATSSS 86 (395)
Q Consensus 58 aL~eALeKiK~ELMLLGFISLLLtv~q~~ 86 (395)
+-.+.||++-.-++..||+.|.++..-+.
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~ 144 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGA 144 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44678899999999999999999876654
No 9
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=34.75 E-value=76 Score=23.90 Aligned_cols=29 Identities=24% Similarity=0.595 Sum_probs=13.9
Q ss_pred CCchHHH-----HHHHHHHHHHHHHHHHHHHHhh
Q 016107 21 TPTWSVA-----TVLTVFVVVSLIVERSIHHLSN 49 (395)
Q Consensus 21 TPTWaVA-----~Vc~v~V~iSl~~Er~lH~lgk 49 (395)
.|||.-- .+..+|.-+.+.+=.-+..+..
T Consensus 1 mp~wlt~iFsvvIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 1 MPTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788532 2233333345555555555544
No 10
>PHA03105 EEV glycoprotein; Provisional
Probab=33.96 E-value=48 Score=31.09 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCch
Q 016107 26 VATVLTVFVVVSLIVERSIHHLSNWLRKTNRKP 58 (395)
Q Consensus 26 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kka 58 (395)
+.++|+.++++..++=-.=|...|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 357788999999999999999999999888865
No 11
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=33.61 E-value=89 Score=22.33 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016107 23 TWSVATVLTVFVVVSLIVERSIHH 46 (395)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~lH~ 46 (395)
.|...+...++++++++..|.-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 2 AWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHh
Confidence 455555666888888989886544
No 12
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.59 E-value=89 Score=31.96 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=24.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHH-------HHhhHHhhcCC
Q 016107 20 LTPTWSVATVLTVFVVVSLIVERSIH-------HLSNWLRKTNR 56 (395)
Q Consensus 20 ~TPTWaVA~Vc~v~V~iSl~~Er~lH-------~lgk~Lkk~~k 56 (395)
+|+-|..+++..+++++.+++++++. .+.+|+.++++
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~ 81 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKR 81 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45566666666666666667889885 45567777554
No 13
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.34 E-value=1.2e+02 Score=27.60 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=36.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCchHHHHHHHHHHHHH---------HHHHHHHHHHhhhcc
Q 016107 21 TPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPLLAAVEKMKEEMM---------LLGFISLFLTATSSS 86 (395)
Q Consensus 21 TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 86 (395)
+-+|..|.+-.|. .+++=.++-+|++- +-|+++.+..-|||+|.+|= .----+||=|..|+|
T Consensus 5 ~~~W~~a~igLvv---Gi~IG~li~Rlt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 5 FMTWEYALIGLVV---GIIIGALIARLTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478877665432 33334444445442 12245678889999998763 223456777777665
No 14
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=25.46 E-value=89 Score=31.93 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=27.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH-------HhhHHhhcCC
Q 016107 20 LTPTWSVATVLTVFVVVSLIVERSIHH-------LSNWLRKTNR 56 (395)
Q Consensus 20 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkk~~k 56 (395)
+|+-|..++++.+++++.+++++++.. +..|..++|+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 577788888888888877888998854 4567777555
No 15
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=24.75 E-value=39 Score=26.72 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 016107 62 AVEKMKEEMMLLGF 75 (395)
Q Consensus 62 ALeKiK~ELMLLGF 75 (395)
-+|++|+|||-+|.
T Consensus 16 GldrLK~~L~a~GL 29 (60)
T PF13297_consen 16 GLDRLKSALMALGL 29 (60)
T ss_pred CHHHHHHHHHHcCC
Confidence 36999999998884
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.41 E-value=80 Score=27.57 Aligned_cols=25 Identities=12% Similarity=0.382 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCc
Q 016107 24 WSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRK 57 (395)
Q Consensus 24 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kk 57 (395)
|+|.++++++++++++.=+ +||+||
T Consensus 5 ~~iii~~i~l~~~~~~~~~---------rRR~r~ 29 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHN---------RRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHhhc
No 17
>PF15050 SCIMP: SCIMP protein
Probab=24.40 E-value=1.3e+02 Score=27.11 Aligned_cols=33 Identities=18% Similarity=0.498 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCc
Q 016107 23 TWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRK 57 (395)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kk 57 (395)
.|++.+|. ||++|+.+--+|--+-+|+-|+.||
T Consensus 8 FWiiLAVa--II~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 8 FWIILAVA--IILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 48877777 5556666666777777777776653
No 18
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=23.84 E-value=2.6e+02 Score=23.00 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCchHHHHHHHHHHHHH
Q 016107 24 WSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPLLAAVEKMKEEMM 71 (395)
Q Consensus 24 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELM 71 (395)
=.+++++++++++.-.+...-..=.+|.+. -.+.|++|.|.+
T Consensus 52 ~~~~~~l~~~~~~~~~~~~~~~~~~~W~~~------r~tae~lk~e~~ 93 (112)
T PF14015_consen 52 KLVAAILSALAAILASLAAFFRFHERWIRY------RATAESLKREKW 93 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHH------HHHHHHHHHHHH
Confidence 345557778888888888888888888775 234566666655
No 19
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=23.24 E-value=1.6e+02 Score=23.85 Aligned_cols=28 Identities=36% Similarity=0.870 Sum_probs=16.7
Q ss_pred HhccCCCchhhhhh----hHHHHHHHHHHHHHH
Q 016107 303 LFNVKGSNLYFWIA----IIPVTLVLLVGSKLQ 331 (395)
Q Consensus 303 Llnv~gw~~yfW~s----fiPlil~L~VGtKLq 331 (395)
++|..|.-.|-|++ .+|++++ +|-+-+|
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l-~v~sv~q 40 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVL-VVHSVLQ 40 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35667777777774 5676654 4444444
No 20
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=22.59 E-value=3.2e+02 Score=22.67 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=26.0
Q ss_pred HHHHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 016107 42 RSIHHLSNWLRKTNRKPLLAAVEKMKEEMMLLGFISLFLT 81 (395)
Q Consensus 42 r~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLLGFISLLLt 81 (395)
=.+|-+=....|||+.+=.||.. .+|-+||+..
T Consensus 21 ~~lh~lP~~iA~kr~Hpq~eaI~-------v~gwisLft~ 53 (78)
T PF11742_consen 21 WKLHDLPGKIAHKRNHPQAEAIH-------VLGWISLFTL 53 (78)
T ss_pred HHHHhhHHHHHHhcCCchHHHHH-------HHHHHHHHHH
Confidence 56888877788888888888865 6899998754
No 21
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=22.40 E-value=63 Score=34.67 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 016107 26 VATVLTVFVVVSLIVERSIHHLSNWL 51 (395)
Q Consensus 26 VA~Vc~v~V~iSl~~Er~lH~lgk~L 51 (395)
.-.||++||..||+==.+.||+.+..
T Consensus 308 YL~vCFvfVF~sLLEYA~V~Y~~~~~ 333 (459)
T KOG3643|consen 308 YLGVCFVFVFLSLLEYAAVNYMFKRR 333 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34699999999998888899998866
No 22
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=21.26 E-value=88 Score=32.45 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHhcc-ccccccccccceeeecccccccccccCCCCCchhHHHHHHHHHHhccCcch
Q 016107 172 ISYSCLTMLLAIVKIHSWRVWEEEAHMD-RHDSLTEITRELTIRRQTTFVRYHTSNPLSRNKLLIWVTCFFRQFGRSVVR 250 (395)
Q Consensus 172 V~ys~lTm~Lg~~Kir~Wk~WE~e~~~~-~~~~~~~~~~~~~~~~qt~F~r~h~~~~w~~~~~l~w~~~FfrQF~~SV~k 250 (395)
.+-|.+|.+|.+|-+=.|=.||+|+... .-+ +++..|.++| - ++.
T Consensus 12 Livct~tYLLvGAaVFdaLEse~E~~~r~~l~-----------~~~~~~~~ky---------------------n--~s~ 57 (350)
T KOG4404|consen 12 LIVCTFTYLLVGAAVFDALESENEARERERLE-----------RRLANLKRKY---------------------N--LSE 57 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH-----------HHHHHHHHhh---------------------C--CCH
Confidence 3468899999999998888888887431 111 1122232323 1 677
Q ss_pred hhHHHHHHhhhhh--cCCCCCCChH
Q 016107 251 ADYLTLRKGFIMN--HNLSPKYDFH 273 (395)
Q Consensus 251 ~DY~tLR~gFI~~--H~~~~~FdFh 273 (395)
.||..|-.=-+.. |++++.+||-
T Consensus 58 ~d~r~~er~i~~s~ph~ag~qWkF~ 82 (350)
T KOG4404|consen 58 EDYRELERVILKSEPHKAGPQWKFA 82 (350)
T ss_pred HHHHHHHHHHHhcCccccccccccC
Confidence 8887776655553 6667777764
No 23
>PRK15135 histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional
Probab=20.30 E-value=1.5e+02 Score=27.73 Aligned_cols=35 Identities=6% Similarity=0.139 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCch
Q 016107 24 WSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKP 58 (395)
Q Consensus 24 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kka 58 (395)
....++..+..++++++|+..+++++.+.+..+|+
T Consensus 192 ~~~~~~~~~y~~~~~~~~~l~~~le~~~~~~~~~~ 226 (228)
T PRK15135 192 YFAIVCGVIYLVFTTVSNGVLLWLERRYSVGVKRA 226 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 34466667778889999999999999888776654
Done!