BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016110
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 574 bits (1479), Expect = e-164, Method: Compositional matrix adjust.
Identities = 270/389 (69%), Positives = 312/389 (80%), Gaps = 3/389 (0%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATIT
Sbjct: 19 MTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATIT 78
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD
Sbjct: 79 PDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGD 138
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
QY+ATD V+ G K+VF P+ + EVYNF GGV + MYNTDESI FA +
Sbjct: 139 QYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCF 197
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F+ IWYEHRLIDDMVA
Sbjct: 198 QYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQ 257
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR
Sbjct: 258 VLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 317
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
HQKG TSTN IASIFAW+RGL HR KLD N L+ F + LE C+ TVESG MTKDLA
Sbjct: 318 EHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLA 377
Query: 361 LIIHGSKMTR--EHYLNTEEFIDAVADDL 387
IHG + EH+LNT +F+D + +L
Sbjct: 378 GCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 266/393 (67%), Positives = 318/393 (80%), Gaps = 1/393 (0%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV +KCATIT
Sbjct: 23 MTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATIT 82
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GD
Sbjct: 83 PDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGD 142
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
QYRATD V+ GPGK+++ + P +K V+NF GGVA+ MYN D+SI FA +S
Sbjct: 143 QYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSF 202
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHRLIDDMVA
Sbjct: 203 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ 262
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR
Sbjct: 263 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYR 322
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+E+G MTKDLA
Sbjct: 323 MYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLA 382
Query: 361 LIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 392
I G + R YLNT EF+D + ++L+ +L+
Sbjct: 383 ACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 415
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 266/393 (67%), Positives = 320/393 (81%), Gaps = 1/393 (0%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTR+ W+ IK+KLI P++ELD+ +DLG+ NRDAT+D+VT ++AEA KYNV +KCATIT
Sbjct: 15 MTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATIT 74
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GD
Sbjct: 75 PDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGD 134
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
QYRATD V+ GPGK+++ + P+ +K V++F GGVA+ MYN D+SI FA +S
Sbjct: 135 QYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSIEDFAHSSF 194
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA I YEHRLIDDMVA
Sbjct: 195 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRLIDDMVAQ 254
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR
Sbjct: 255 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYR 314
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
++QKG ETSTN IASIFAWSRGLAHRAKLDNN L F + LE CI T+E+G MTKDLA
Sbjct: 315 MYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLA 374
Query: 361 LIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 392
I G + R YLNT EF+D + ++L+A+L+
Sbjct: 375 ACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 407
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 266/393 (67%), Positives = 318/393 (80%), Gaps = 1/393 (0%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV +KCATIT
Sbjct: 18 MTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATIT 77
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GD
Sbjct: 78 PDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGD 137
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
QYRATD V+ GPGK+++ + P +K V+NF GGVA+ MYN D+SI FA +S
Sbjct: 138 QYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSF 197
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHRLIDDMVA
Sbjct: 198 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ 257
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR
Sbjct: 258 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYR 317
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+E+G MTKDLA
Sbjct: 318 MYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLA 377
Query: 361 LIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 392
I G + R YLNT EF+D + ++L+ +L+
Sbjct: 378 ACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 569 bits (1466), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/393 (67%), Positives = 317/393 (80%), Gaps = 1/393 (0%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV +KCATIT
Sbjct: 18 MTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATIT 77
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IG HA+GD
Sbjct: 78 PDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGHHAYGD 137
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
QYRATD V+ GPGK+++ + P +K V+NF GGVA+ MYN D+SI FA +S
Sbjct: 138 QYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSF 197
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHRLIDDMVA
Sbjct: 198 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ 257
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR
Sbjct: 258 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYR 317
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+E+G MTKDLA
Sbjct: 318 MYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLA 377
Query: 361 LIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 392
I G + R YLNT EF+D + ++L+ +L+
Sbjct: 378 ACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/393 (67%), Positives = 317/393 (80%), Gaps = 1/393 (0%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV +KCATIT
Sbjct: 18 MTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATIT 77
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IG HA+GD
Sbjct: 78 PDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGHHAYGD 137
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
QYRATD V+ GPGK+++ + P +K V+NF GGVA+ MYN D+SI FA +S
Sbjct: 138 QYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSF 197
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHRLIDDMVA
Sbjct: 198 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ 257
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR
Sbjct: 258 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYR 317
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+E+G MTKDLA
Sbjct: 318 MYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLA 377
Query: 361 LIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 392
I G + R YLNT EF+D + ++L+ +L+
Sbjct: 378 ACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 531 bits (1368), Expect = e-151, Method: Compositional matrix adjust.
Identities = 261/388 (67%), Positives = 309/388 (79%), Gaps = 8/388 (2%)
Query: 2 TRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 61
TR+ W+ IKDKLI P+L+LD++Y+DLG+ NRDATDD+VT+++A A K+ V +KCATITP
Sbjct: 42 TRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITP 101
Query: 62 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQ 121
DE RV+EF LK+ WKSPNGTIRNIL G +FREPIICKNVPRL+PGWTKPI +GRHAFGDQ
Sbjct: 102 DEGRVEEFKLKKXWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQ 161
Query: 122 YRATDTVIQGPGKLKLVFVPEGKDEKT-ELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
YRATD G GKL + FV G+D +T E +VY+ G GVAL+ YN DESI FA AS
Sbjct: 162 YRATDFKFPGKGKLSIKFV--GEDGQTIEHDVYDAPG-AGVALAXYNLDESITEFARASF 218
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
N Q+K P+YLSTKNTILK YDGRFKDIFQ+V++ + ++F+A +WYEHRLIDD VA
Sbjct: 219 NYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLIDDXVAS 278
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
ALK GGYVWACKNYDGDVQSD +AQGFGSLGL TSVL PDGKT+EAEAAHGTVTRHYR
Sbjct: 279 ALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLXTSVLXTPDGKTVEAEAAHGTVTRHYR 338
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
HQKG ETSTNSIASIFAW+RGLAHRAKLD NA L F+E LE C+ TVESG TKDLA
Sbjct: 339 QHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFXTKDLA 398
Query: 361 LIIHGSKMTREHYLNTEEFIDAVADDLR 388
L+I + +L+T F+D + ++LR
Sbjct: 399 LLIG----PDQPWLSTTGFLDKIDENLR 422
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/392 (64%), Positives = 301/392 (76%), Gaps = 4/392 (1%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A K+ V +KCATIT
Sbjct: 21 MTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATIT 80
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+ NVPRL+PGWTKPI IGRHAFGD
Sbjct: 81 PDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGD 140
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
QYRAT+ + PG + L F P E+ + +GGV L MYN ESIR FA AS
Sbjct: 141 QYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASF 200
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
+ KWP+YLSTKNTILK YDG FKD F+ VYE +K++FEAAG+ YEHRLIDDMVA
Sbjct: 201 SYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVAA 260
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+ DGKT+EAEAAHGTVTRHYR
Sbjct: 261 CLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYR 320
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
+Q G TSTN IASIFAW+RGL HR KLD ++DF KLE+ I TVESGKMTKDLA
Sbjct: 321 QYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLA 380
Query: 361 LIIHGSKMTREHYLNTEEFIDAVADDLRARLS 392
++I + +LN+EEF+DA+AD+L L+
Sbjct: 381 ILIG----PEQDWLNSEEFLDAIADNLEKELA 408
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/394 (65%), Positives = 303/394 (76%), Gaps = 6/394 (1%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTR+ W IK KLI P+L++D+KY+DL + +RDAT DK+T ++AEA KY V IKCATIT
Sbjct: 33 MTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATIT 92
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PDEARVKEF L +MWKSPNGTIRNIL GTVFREPI+ +PRL+P W KPI IGRHA GD
Sbjct: 93 PDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGD 152
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKD--EKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 178
QY+ATDT+I GPG L+LV+ P + L+VY++ G GVA++MYNTDESI FA +
Sbjct: 153 QYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG-SGVAMAMYNTDESIEGFAHS 211
Query: 179 SMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMV 238
S A KK L+LSTKNTILKKYDGRFKDIFQEVYEA +KSKFE GI YEHRLIDDMV
Sbjct: 212 SFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMV 271
Query: 239 AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH 298
A +KS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+LV PDGKT E+EAAHGTVTRH
Sbjct: 272 AQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRH 331
Query: 299 YRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES-GKMTK 357
YR +QKG ETSTNSIASIFAWSRGL R +LDN L F LE+A + TV+ G MTK
Sbjct: 332 YRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTK 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 391
DLAL ++ R Y+ TEEF+DAV L+ +
Sbjct: 392 DLALACGNNE--RSAYVTTEEFLDAVEKRLQKEI 423
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/383 (54%), Positives = 269/383 (70%), Gaps = 6/383 (1%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTR+ W+ IK+ L+ P++EL+ +Y+DLGL NRD T+D+VT+++A A KY V +KCATIT
Sbjct: 18 MTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATIT 77
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
P+ RV+E+ LK+MWKSPNGTIR IL+GTVFR PI+ ++ + GW KPI I RHA+GD
Sbjct: 78 PNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGD 137
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
Y+ + + GK +LVF E E + ++ F G GV + M+NTD+SIR+FA A
Sbjct: 138 VYKNVEYYVPSAGKAELVFTSEN-GEVSRQTIHEFDGP-GVIMGMHNTDKSIRSFARACF 195
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
N A L+ STK+TI K YD RFKDIFQE+YE +K KFEA + Y + LIDD VA
Sbjct: 196 NYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVAR 255
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
++SEGG VWACKNYDGDV SD +A FGSL +MTSVLV PDGK E EAAHGTVTRHY
Sbjct: 256 IIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGK-YEFEAAHGTVTRHYY 314
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
H KG ETSTNS+A+IFAW+ L R +LD L+DF KLE A + T+E+G MTKDLA
Sbjct: 315 KHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLA 374
Query: 361 LIIHGSKMTREHYLNTEEFIDAV 383
+ S++ + +NTE+F+ +
Sbjct: 375 SL---SEVPEKKIVNTEDFLKEI 394
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/391 (51%), Positives = 268/391 (68%), Gaps = 9/391 (2%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
M RV WK IK+KLI P+L++ + YFDLG+ RD TDD++T+E+A+A KY V +KCATIT
Sbjct: 18 MARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATIT 77
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
PD RVKE+ LK+ WKSPN TIR L+GTVFR+PI+ KNVP L+ W KPI IGRHA+GD
Sbjct: 78 PDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGD 137
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 180
Y A + ++GP +++LV K+ KT L V+ F G GV ++M+N ++SIR+FA++ +
Sbjct: 138 IYNAVEAKVEGPAEVELVV--RNKENKT-LLVHKFEG-NGVVMAMHNLEKSIRSFAQSCI 193
Query: 181 NTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240
N A +K ++ +TK+TI K Y FKDIFQE + K + E AG+ Y + LIDD A
Sbjct: 194 NYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKR-KEELEKAGVNYRYMLIDDAAAQ 252
Query: 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
L+SEGG +WAC NY+GD+ SD +A GFGSLGLMTSVLV PDG E EAAHGTV RHY
Sbjct: 253 ILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGTVRRHYY 311
Query: 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
+ KG +TSTN ASIFAW+ + R +LD + +F +KLE A I T+ESG +TKDL
Sbjct: 312 RYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQ 371
Query: 361 LIIHGSKMTREHYLNTEEFIDAVADDLRARL 391
++ + Y+ EEFID V +L L
Sbjct: 372 PF---TEPPIDKYVTLEEFIDEVKKNLEKLL 399
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 186/390 (47%), Positives = 254/390 (65%), Gaps = 10/390 (2%)
Query: 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATIT 60
MTRV W IKDKL+ PF++L +Y+DLG+ RD T+D++T+++AEA KY V +K ATIT
Sbjct: 17 MTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATIT 76
Query: 61 PDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGD 120
P++ RV+E+ LK+ WKSPN T+R +L+GTVFR+PI+ KN+ + W KPI +GRHA+GD
Sbjct: 77 PNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGD 136
Query: 121 QYRATDTVIQGPGKLKLVFVPEGKDE--KTELEVYNFTGEGGVALSMYNTDESIRAFAEA 178
Y+ + + GKL++V + E +T +EV E + ++NT SI FA A
Sbjct: 137 FYKNAEIFAEAGGKLEIVVTDKNGKETRQTIMEV----DEPAIVQGIHNTVASIGHFARA 192
Query: 179 SMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMV 238
+ +K + +TK+TI K+YD RFK IF+E++ +K KF AAGI Y + LIDD+V
Sbjct: 193 CFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVV 252
Query: 239 AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH 298
A +K+EGG +WACKNYDGDV SD +A FGSL +M+SVLV P G E EAAHGTV RH
Sbjct: 253 ARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGTVQRH 311
Query: 299 YRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKD 358
Y H KG TSTN +A I+AW+ L R +LD L F + LEA I +ESG MT D
Sbjct: 312 YYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGD 371
Query: 359 LALIIHGSKMTREHYLNTEEFIDAVADDLR 388
LA I + + L++ EFID + L+
Sbjct: 372 LARICEPAAI---KVLDSIEFIDELGKRLQ 398
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 227 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 285
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 286 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 345
+ E A G+ G+ N +A I + + L H KL++ A +EAA
Sbjct: 288 M-YEPAGGSAP------DIAGQGIANPVAQILSAALLLRHSLKLEDAAL------AIEAA 334
Query: 346 CIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 389
+ SG +T +L S R T + D +AD ++A
Sbjct: 335 VSKALNSGYLTGELL-----SSDQRHKAKTTVQMGDFIADAVKA 373
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 225 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 284
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 285 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 342
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 343 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 389
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 390 DFERLMDGAKL-----LKCSEFGDAIIENM 414
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDEYALF--EATHGTAP- 343
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
G+ N + I + L H + ++ E G + + +TK
Sbjct: 344 -----DIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTK 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFESLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPA 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 227 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 285
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 286 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 345
+ E A G+ G+ N +A I + + L H KL++ A +EAA
Sbjct: 288 M-YEPAGGSAP------DIAGQGIANPVAQILSAALLLRHSLKLEDAAL------AIEAA 334
Query: 346 CIGTVESGKMTKDL 359
+ G +T +L
Sbjct: 335 VSKALSDGYLTCEL 348
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 84/213 (39%), Gaps = 36/213 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEAN--------------WKSKFEAAGIWYEHRLIDDM 237
L K I+K +G F+D EV + + K I + R+ D+M
Sbjct: 220 LVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNM 279
Query: 238 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 296
L Y V A N +GD SD A G LG+ + DG + E HG+
Sbjct: 280 FQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIG-DGIGV-FEPVHGSAP 337
Query: 297 RHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMT 356
++ G+ N A I + + D +E ++ A T+ SG +T
Sbjct: 338 KY------AGQNKVNPTAEILTGALMFEYIG-------WKDASEMIKKAVEMTISSGIVT 384
Query: 357 KDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 389
D+ + G+K + T EF +AV ++L++
Sbjct: 385 YDIHRHMGGTK------VGTREFAEAVVENLQS 411
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 358 DLALIIHGSKMTREHYLNTEEFIDAVADDL 387
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 227 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 285
+ EH ID+ L+ + V C N GD+ SD +A GS+GL++S + G
Sbjct: 228 VELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFG 287
Query: 286 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 345
+ E A G+ G+ N IA I + + L H K + A +E A
Sbjct: 288 L-FEPAGGSAP------DIAGKGIANPIAQILSAALMLRHSLKQEEAA------SAIERA 334
Query: 346 CIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 389
+ SG +T +L S R T + D +AD ++A
Sbjct: 335 VTKALNSGYLTGELL-----SSDQRHKAKTTVQMGDFIADAVKA 373
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 33/236 (13%)
Query: 157 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 216
GE ++ T E I + A +K + K +L+ +++EV E
Sbjct: 173 GEEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVLES-----SRLWREVAEE 227
Query: 217 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 275
K E + EH L+D+ +++ + V +N GD+ SD + GSLG++
Sbjct: 228 VAK---EYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLP 284
Query: 276 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 335
S + DG + E HG+ G+ N +A+I + + L + L+ A+
Sbjct: 285 SASLSTDGLGL-YEPVHGSAP------DIAGKGIANPLATILSAAMMLRYSFGLEEEAK- 336
Query: 336 LDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFID----AVADDL 387
+E A + G T D+A G K Y++T E D AV D+L
Sbjct: 337 -----AIEKAVEKVLAEGYRTADIAK--PGGK-----YVSTTEMTDEVKAAVVDEL 380
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 190 LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 248
++ +TK+ I+K +G K F++V + E I H ++D+ +K +
Sbjct: 186 VHCATKSNIMKLAEGTLKRAFEQVAQ-------EYPDIEAVHIIVDNAAHQLVKRPEQFE 238
Query: 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 308
V N +GD+ SD + G LG S + + EA HG+ ++ G+
Sbjct: 239 VIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIF--EAVHGSAPKY------AGKN 290
Query: 309 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGK-MTKDLALIIHGSK 367
N A + + L + + + +E A + T+E G+ +T D+ G+K
Sbjct: 291 VINPTAVLLSAVMMLRYLEEFAT-------ADLIENALLYTLEEGRVLTGDVVGYDRGAK 343
Query: 368 MTREHYLNTEEFIDAVADDL 387
T E+ +A+ +L
Sbjct: 344 TT--------EYTEAIIQNL 355
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 231 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 289
H ID+ +K + V C N GD+ SD A GS+G++ S + G + E
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGL-YE 281
Query: 290 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGT 349
A G+ G+ N IA I + + L R LD N D +E A
Sbjct: 282 PAGGSAP------DIAGKNIANPIAQILSLA--LLLRYSLDAN----DAATAIEQAINRA 329
Query: 350 VESGKMTKDLA 360
+E G T DLA
Sbjct: 330 LEEGVRTGDLA 340
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 198 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 257
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 258 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 308
Query: 331 NNAR 334
AR
Sbjct: 309 ELAR 312
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 165 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 224
+Y+ DE IR A + A ++ L K +L+ ++++ EV +
Sbjct: 161 VYDEDE-IRRIAHVAFRAAQGRRKQLCSVDKANVLETTR-LWREVVTEVAR-------DY 211
Query: 225 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 283
+ H +D+ +++ + V N GD+ SD +Q GS+G++ S + +G
Sbjct: 212 PDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG 270
Query: 284 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLE 343
+ + E HG+ G+ N +A+I + + L H + + +++E
Sbjct: 271 RAMY-EPIHGSAP------DIAGQDKANPLATILSVAMMLRHSLNAEP------WAQRVE 317
Query: 344 AACIGTVESGKMTKDLA 360
AA ++ G T D+A
Sbjct: 318 AAVQRVLDQGLRTADIA 334
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 193 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 252
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 253 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 303
Query: 331 NNAR 334
AR
Sbjct: 304 ELAR 307
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 231 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 289
H ID+ +K + V C N GD+ SD A GS+G++ S + G + E
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGL-YE 281
Query: 290 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGT 349
A G+ G+ N IA I + + L R LD + D +E A
Sbjct: 282 PAGGSAP------DIAGKNIANPIAQILSLA--LLLRYSLDAD----DAACAIERAINRA 329
Query: 350 VESGKMTKDLA 360
+E G T DLA
Sbjct: 330 LEEGIRTGDLA 340
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 34/215 (15%)
Query: 104 IPGWTKPICIGRHAFG--DQYRATDTVIQGPGK-LKLVFVPEGKD---EKTELEVYNFTG 157
+ G++ PI R G R ++ GK + LV V E + K E V N G
Sbjct: 90 VAGYSSPIVALRKKMGLYANVRPVKSLDGAKGKPVDLVIVRENTECLYVKEERMVQNTPG 149
Query: 158 E-----------------GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILK 200
+ G +A + + + IR S++ KK + + K+ ++
Sbjct: 150 KRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIH----KKPLVTIIHKSNVMS 205
Query: 201 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDV 259
DG F++ + + A I + +++D MV + + V N GD+
Sbjct: 206 VTDGLFRESCRHAQSLDPSY----ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDI 261
Query: 260 QSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 294
SD A GSLGL+ S V + + +E HG+
Sbjct: 262 LSDGAASLIGSLGLVPSANVGDN--FVMSEPVHGS 294
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 18/173 (10%)
Query: 175 FAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLI 234
A+ +N A +++ + K +++ DG +F E + K K E Y +
Sbjct: 149 IAKVGLNFALRRRKKVTCVHKANVMRITDG----LFAEACRSVLKGKVE-----YSEMYV 199
Query: 235 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 293
D A +++ + V +N GD+ SD +Q GSLG+ S + D K + E HG
Sbjct: 200 DAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIG-DKKAL-FEPVHG 257
Query: 294 TVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAAC 346
G+ N A + + S +L N+ R + + LE A
Sbjct: 258 A------AFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAI 304
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 77/201 (38%), Gaps = 34/201 (16%)
Query: 190 LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA-YALKSEGGY 248
L+++ K +L G F D +EV + F + + ++D+ ++ E
Sbjct: 166 LHIAHKANVLPLTQGLFLDTVKEVAK-----DFPLVNV--QDIIVDNCATQLVMRPERYD 218
Query: 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 308
V N GD+ SD A G LGL P G + A V H G+
Sbjct: 219 VIVTTNLLGDILSDLAAGLMGGLGL------APSGNIGDTTAVFEPV--HGSAPDIAGKG 270
Query: 309 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKM 368
N A+I + + L + + + R +E A +E G MT DL G
Sbjct: 271 IANPTAAILSAAMMLDYLGEKEAAKR-------VEKAVDLVLERGPMTPDL-----GGDA 318
Query: 369 TREHYLNTEEFIDAVADDLRA 389
T TE F +AV + L++
Sbjct: 319 T------TEAFTEAVVEALKS 333
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 308
V N GD+ SD A GSLGL+ S G E A G+ G+
Sbjct: 246 VILTTNMFGDILSDESAALPGSLGLLPSASF---GDKNLYEPAGGSAP------DIAGKN 296
Query: 309 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 360
N IA I + + L H + AR K+E A +E G T+D+A
Sbjct: 297 IANPIAQILSLAMMLEHSFGMVEEAR------KIERAVELVIEEGYRTRDIA 342
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 218 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 271
W+ E G Y EH+ +D + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 272 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 331 NNAR 334
AR
Sbjct: 306 ELAR 309
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 157 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 216
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 217 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 275
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVITGSLGMLP 263
Query: 276 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 335
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 336 LDFTEKLEAACIGTVESGKMTKDL 359
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 22/207 (10%)
Query: 155 FTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 214
F GE +M ++ +R A + A QK+ LS + + + ++D+ +V
Sbjct: 158 FAGEREGFDTMRYSEPEVRRIAHVAFQAA-QKRAKKLLSVDKSNVLETSQFWRDVMIDVS 216
Query: 215 EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGL 273
+ E A + H +D+ K+ + V N GD+ SD + GS+G+
Sbjct: 217 K-------EYADVELSHMYVDNAAMQLAKAPKQFDVIVTGNMFGDILSDEASMLTGSIGM 269
Query: 274 MTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNA 333
+ S + + K + E +HG+ G+ N +A+I S + R L+
Sbjct: 270 LPSASLDKNNKGLY-EPSHGSAP------DIAGKGIANPLATIL--SAAMLLRYSLNRAE 320
Query: 334 RLLDFTEKLEAACIGTVESGKMTKDLA 360
+ +++E A +E G T D+A
Sbjct: 321 Q----ADRIERAVKTVLEQGYRTGDIA 343
>pdb|3TKN|A Chain A, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|D Chain D, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|G Chain G, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
Length = 452
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 20/131 (15%)
Query: 109 KPICIGR--HAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNF-TGEGGVALSM 165
KPI + + ++FG R D L F +G L +Y T EGG +
Sbjct: 162 KPIVLNKPNNSFGLDARVNDIT-------DLEFSKDG------LTLYCLNTTEGGDIFAF 208
Query: 166 YNTDESIRAFAEASMNTAYQKKWPLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKF 222
Y S+ E +N K +Y S T + I+K+ + +++E NW S+F
Sbjct: 209 YPFLPSVLLLNEKDLNLILNKSLVMYESLDSTTDVIVKRNVIKQLQFVSKLHE-NWNSRF 267
Query: 223 EAAGIWYEHRL 233
I E+RL
Sbjct: 268 GKVDIQKEYRL 278
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 29/189 (15%)
Query: 192 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 241
L K I+K +G F+D + + + ++ G W + + ++ D +A A
Sbjct: 237 LVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFL 296
Query: 242 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 297
L+ V A N +GD SD LA G +G+ + EA HGT +
Sbjct: 297 QQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMF--EATHGTAPK 354
Query: 298 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 357
+ G+ N + I + L H + ++ EK +++ ++T
Sbjct: 355 Y------AGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEK-------SIKQKRVTY 401
Query: 358 DLALIIHGS 366
D A ++ G+
Sbjct: 402 DFARLMEGA 410
>pdb|3IF0|X Chain X, Crystal Structure Of The Nanoarchaeum Equitans Trna
Splicing Endonuclease Structural Subunit
pdb|3IEY|B Chain B, Crystal Structure Of The Functional Nanoarchaeum Equitans
Trna Splicing Endonuclease
Length = 153
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 184 YQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 215
Y+ W +Y + K+ IL+ Y RF F E+YE
Sbjct: 57 YKNFWEIYYTVKDLILRGYRVRFDGFFIELYE 88
>pdb|3PBP|A Chain A, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|D Chain D, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|G Chain G, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|J Chain J, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
Length = 452
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
Query: 109 KPICIGR--HAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNF-TGEGGVALSM 165
KPI + + ++FG R D L F +G L +Y T EGG +
Sbjct: 162 KPIVLNKPNNSFGLDARVNDIT-------DLEFSKDG------LTLYCLNTTEGGDIFAF 208
Query: 166 YNTDESIRAFAEASMNTAYQKKWPLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKF 222
Y S+ E +N K Y S T + I+K+ + +++E NW S+F
Sbjct: 209 YPFLPSVLLLNEKDLNLILNKSLVXYESLDSTTDVIVKRNVIKQLQFVSKLHE-NWNSRF 267
Query: 223 EAAGIWYEHRL 233
I E+RL
Sbjct: 268 GKVDIQKEYRL 278
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 157 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 216
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 217 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 275
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 276 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 335
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 336 LDFTEKLEAACIGTVESGKMTKDL 359
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|2FIC|A Chain A, The Crystal Structure Of The Bar Domain From Human
Bin1AMPHIPHYSIN II And Its Implications For Molecular
Recognition
pdb|2FIC|B Chain B, The Crystal Structure Of The Bar Domain From Human
Bin1AMPHIPHYSIN II And Its Implications For Molecular
Recognition
Length = 251
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 40/151 (26%)
Query: 100 VPR---LIPGWTKPICIGRHAFGDQY---RATDTVIQGPGKLKLVFVPEGKDEKTELEVY 153
VPR + +K + G+ A Q RA + V+Q GK E KDE+ E V
Sbjct: 5 VPRGSHMAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGK-----ADETKDEQFEQCVQ 59
Query: 154 NFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEV 213
NF + + T QK YL++ + + + + QEV
Sbjct: 60 NFN-------------------KQLTEGTRLQKDLRTYLASVKA-MHEASKKLNECLQEV 99
Query: 214 YEANWKSKFEAAGI-------W--YEHRLID 235
YE +W + EA I W Y +L+D
Sbjct: 100 YEPDWPGRDEANKIAENNDLLWMDYHQKLVD 130
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 157 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 216
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 217 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 275
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 276 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 335
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 336 LDFTEKLEAACIGTVESGKMTKDL 359
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|4AVG|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVL|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVQ|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AWF|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWG|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWH|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
Length = 204
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 144 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 186
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 145 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 187
>pdb|4AWM|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With (-)-Epigallocatechin
Gallate From Green Tea
Length = 192
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 144 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 186
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 133 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 175
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 341 KLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 385
K+ + CI VESG + +D+A I G M H+ +D +D
Sbjct: 67 KIYSCCIQLVESGDLQQDVASEIIGLLMLEVHHFPGPLLVDLASD 111
>pdb|4AWK|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 1
Length = 183
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 144 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 186
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 124 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 166
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 63/243 (25%)
Query: 168 TDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 227
T + I A + +A +K ++L K +L +++EV AN ++ I
Sbjct: 165 TKKEIERIARIAFESARIRKKKVHLIDKANVLAS-----SILWREVV-ANVAKDYQ--DI 216
Query: 228 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLA----------------QGFGS 270
E+ +D+ +K+ + V C N GD+ SD LA +GFG
Sbjct: 217 NLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFG- 275
Query: 271 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330
L P G + + AH + N IA I + + L + K +
Sbjct: 276 -------LYEPAGGS-APDIAHLNI--------------ANPIAQILSAALMLKYSFKEE 313
Query: 331 NNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAR 390
A + +E A + GKMTKDL + YLNT+E D + + L+
Sbjct: 314 QAA------QDIENAISLALAQGKMTKDL---------NAKSYLNTDEMGDCILEILKEN 358
Query: 391 LSG 393
+G
Sbjct: 359 DNG 361
>pdb|3HW3|A Chain A, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|B Chain B, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|C Chain C, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|D Chain D, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW5|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW6|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW4|A Chain A, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|B Chain B, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|C Chain C, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|D Chain D, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
Length = 261
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 144 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 186
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 144 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 186
>pdb|3EBJ|A Chain A, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|B Chain B, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|C Chain C, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|D Chain D, Crystal Structure Of An Avian Influenza Virus Protein
Length = 259
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 144 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 186
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 142 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 184
>pdb|3OR2|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
pdb|3OR2|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
Length = 385
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 187 KWPLYLSTKNTILKKY--DGR-FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALK 243
+WP I++ Y D R ++ I ++ W++ +E G+ + H IDD +
Sbjct: 311 RWPTMAKIVKKIVEVYAEDARKYERIGDWIHRIGWETFYEKTGLEFSHHCIDD-----FR 365
Query: 244 SEGGYVW 250
Y W
Sbjct: 366 DPAYYTW 372
>pdb|3OR1|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
pdb|3OR1|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
Length = 386
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 187 KWPLYLSTKNTILKKY--DGR-FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALK 243
+WP I++ Y D R ++ I ++ W++ +E G+ + H IDD +
Sbjct: 312 RWPTMAKIVKKIVEVYAEDARKYERIGDWIHRIGWETFYEKTGLEFSHHCIDD-----FR 366
Query: 244 SEGGYVW 250
Y W
Sbjct: 367 DPAYYTW 373
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 246 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
GGYVW KN DG VQ+D A G +T L+ P G I +T HY
Sbjct: 326 GGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTG--IRLATTTTDITGHYN 373
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 246 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300
GGYVW KN DG VQ+D A G +T L+ P G I +T HY
Sbjct: 309 GGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTG--IRLATTTTDITGHYN 356
>pdb|1DI1|A Chain A, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DI1|B Chain B, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DGP|A Chain A, Aristolochene Synthase Farnesol Complex
pdb|1DGP|B Chain B, Aristolochene Synthase Farnesol Complex
Length = 300
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 6 WKSIKDKLIFPFLELDIKYFDLGLPNR--------------DATDDKVTVESAEATLKYN 51
+K+++ L F E+ YF L L +R D + ++ EA
Sbjct: 35 FKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMSFADGEAYNNRL 94
Query: 52 VAIKCATITPDEARVKEFVLKQMWKS 77
+ I + PD + +EF+L +W+S
Sbjct: 95 IPISRGDVLPDRTKPEEFILYDLWES 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,473,563
Number of Sequences: 62578
Number of extensions: 539786
Number of successful extensions: 1265
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 88
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)