Query 016110
Match_columns 395
No_of_seqs 123 out of 1100
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00127 nadp_idh_euk isocitr 100.0 3E-104 6E-109 797.4 36.7 391 1-392 17-408 (409)
2 PTZ00435 isocitrate dehydrogen 100.0 4E-104 9E-109 797.1 37.8 390 1-392 20-411 (413)
3 PLN03065 isocitrate dehydrogen 100.0 2E-103 4E-108 800.7 38.7 393 1-394 88-480 (483)
4 PRK08299 isocitrate dehydrogen 100.0 1E-101 2E-106 778.3 37.4 385 1-391 18-402 (402)
5 COG0473 LeuB Isocitrate/isopro 100.0 4E-100 8E-105 746.1 29.5 310 16-389 32-347 (348)
6 PLN00103 isocitrate dehydrogen 100.0 1.1E-95 2E-100 736.3 35.7 364 1-391 20-410 (410)
7 PRK08997 isocitrate dehydrogen 100.0 4.6E-95 1E-99 718.5 33.9 313 5-387 17-334 (334)
8 PLN00118 isocitrate dehydrogen 100.0 3.6E-95 8E-100 726.2 33.1 312 5-387 56-372 (372)
9 PRK08194 tartrate dehydrogenas 100.0 5E-95 1.1E-99 723.2 33.1 311 17-388 35-350 (352)
10 PLN02329 3-isopropylmalate deh 100.0 8.2E-95 1.8E-99 729.6 32.9 333 6-393 62-407 (409)
11 PRK14025 multifunctional 3-iso 100.0 1.2E-94 2.6E-99 714.5 33.0 305 7-387 18-330 (330)
12 PLN00096 isocitrate dehydrogen 100.0 2E-94 4.4E-99 718.2 33.3 372 1-387 9-393 (393)
13 TIGR02089 TTC tartrate dehydro 100.0 1.6E-94 3.5E-99 720.1 32.2 311 17-387 35-352 (352)
14 PRK06451 isocitrate dehydrogen 100.0 6.2E-94 1.3E-98 726.1 34.8 331 17-387 57-408 (412)
15 TIGR00169 leuB 3-isopropylmala 100.0 3.2E-93 7E-98 710.1 33.0 311 17-387 30-349 (349)
16 TIGR02924 ICDH_alpha isocitrat 100.0 2.3E-93 5.1E-98 728.2 32.2 319 5-389 15-339 (473)
17 PRK09222 isocitrate dehydrogen 100.0 5.5E-93 1.2E-97 727.8 33.3 321 5-391 19-345 (482)
18 PLN00123 isocitrate dehydrogen 100.0 1.5E-92 3.3E-97 704.0 33.6 306 5-387 45-359 (360)
19 PRK03437 3-isopropylmalate deh 100.0 1.1E-92 2.4E-97 704.5 32.2 305 17-387 34-344 (344)
20 PRK00772 3-isopropylmalate deh 100.0 2.1E-92 4.7E-97 705.7 33.6 312 17-388 33-356 (358)
21 TIGR00175 mito_nad_idh isocitr 100.0 3.1E-92 6.7E-97 700.1 32.8 312 3-387 16-333 (333)
22 PRK07006 isocitrate dehydrogen 100.0 1.1E-91 2.4E-96 710.4 34.2 335 17-387 53-409 (409)
23 KOG0785 Isocitrate dehydrogena 100.0 1.2E-92 2.6E-97 678.2 21.9 312 4-387 49-365 (365)
24 TIGR00183 prok_nadp_idh isocit 100.0 3.9E-91 8.4E-96 709.0 33.6 336 17-387 60-416 (416)
25 TIGR02088 LEU3_arch isopropylm 100.0 7.7E-91 1.7E-95 686.5 33.0 307 5-384 13-322 (322)
26 PRK07362 isocitrate dehydrogen 100.0 6.9E-91 1.5E-95 703.2 31.9 335 18-386 63-473 (474)
27 PF00180 Iso_dh: Isocitrate/is 100.0 1.6E-88 3.5E-93 679.2 22.0 318 6-383 19-348 (348)
28 COG0538 Icd Isocitrate dehydro 100.0 3.9E-84 8.4E-89 635.4 30.0 356 1-388 33-407 (407)
29 KOG0784 Isocitrate dehydrogena 100.0 1.8E-77 4E-82 580.0 23.1 311 5-389 57-374 (375)
30 KOG1526 NADP-dependent isocitr 100.0 6.3E-73 1.4E-77 541.3 27.4 392 1-394 29-420 (422)
31 KOG0786 3-isopropylmalate dehy 100.0 1.5E-70 3.2E-75 514.6 19.8 313 16-391 34-362 (363)
32 PF03971 IDH: Monomeric isocit 95.9 0.18 3.8E-06 54.2 14.2 180 160-353 450-640 (735)
33 TIGR00178 monomer_idh isocitra 95.4 0.38 8.3E-06 51.8 14.5 171 169-353 463-644 (741)
34 PF04166 PdxA: Pyridoxal phosp 93.6 0.05 1.1E-06 54.3 2.8 137 165-321 150-296 (298)
35 PRK03371 pdxA 4-hydroxythreoni 92.6 0.088 1.9E-06 53.1 2.9 138 165-323 176-323 (326)
36 PRK00232 pdxA 4-hydroxythreoni 92.6 0.087 1.9E-06 53.3 2.8 140 165-325 177-326 (332)
37 COG2838 Icd Monomeric isocitra 92.5 3 6.5E-05 44.3 13.8 175 166-353 462-646 (744)
38 PRK03743 pdxA 4-hydroxythreoni 92.3 0.097 2.1E-06 53.0 2.8 141 165-325 177-326 (332)
39 COG1995 PdxA Pyridoxal phospha 92.2 0.098 2.1E-06 52.5 2.7 58 262-325 268-325 (332)
40 PRK01909 pdxA 4-hydroxythreoni 92.2 0.1 2.2E-06 52.7 2.8 140 165-325 172-322 (329)
41 PRK03946 pdxA 4-hydroxythreoni 92.1 0.11 2.4E-06 52.0 2.8 135 165-325 157-303 (307)
42 PRK05312 pdxA 4-hydroxythreoni 92.0 0.11 2.4E-06 52.6 2.8 142 165-325 181-331 (336)
43 PRK02746 pdxA 4-hydroxythreoni 92.0 0.11 2.5E-06 52.6 2.8 140 165-325 179-339 (345)
44 TIGR00557 pdxA 4-hydroxythreon 91.8 0.12 2.7E-06 51.9 2.9 138 165-323 169-317 (320)
45 TIGR00127 nadp_idh_euk isocitr 87.7 0.29 6.2E-06 50.9 1.8 21 108-128 140-161 (409)
46 PLN00103 isocitrate dehydrogen 84.3 0.49 1.1E-05 49.2 1.5 6 341-346 364-369 (410)
47 COG4992 ArgD Ornithine/acetylo 41.2 42 0.00091 35.1 4.9 54 258-327 247-301 (404)
48 PTZ00435 isocitrate dehydrogen 38.7 12 0.00026 39.2 0.5 18 108-125 143-161 (413)
49 KOG1671 Ubiquinol cytochrome c 34.9 22 0.00047 33.7 1.5 34 271-312 156-189 (210)
50 KOG1014 17 beta-hydroxysteroid 32.0 69 0.0015 32.4 4.6 45 177-236 64-108 (312)
51 PF00582 Usp: Universal stress 31.3 55 0.0012 26.3 3.3 26 169-194 12-37 (140)
52 PRK07232 bifunctional malic en 29.8 2E+02 0.0043 32.7 8.1 97 168-271 602-714 (752)
53 PF14542 Acetyltransf_CG: GCN5 25.7 1.6E+02 0.0035 23.2 4.9 38 171-219 39-76 (78)
54 PRK12861 malic enzyme; Reviewe 25.1 3.1E+02 0.0067 31.2 8.6 96 168-270 611-722 (764)
55 cd01988 Na_H_Antiporter_C The 25.0 90 0.0019 25.5 3.5 26 170-195 10-35 (132)
56 PRK15005 universal stress prot 24.5 1E+02 0.0022 26.0 3.8 23 172-194 17-39 (144)
57 COG1222 RPT1 ATP-dependent 26S 23.3 45 0.00098 34.6 1.6 68 173-261 230-304 (406)
58 TIGR00178 monomer_idh isocitra 22.2 3.2E+02 0.007 30.3 7.6 114 119-235 179-299 (741)
59 TIGR00651 pta phosphate acetyl 21.3 3.4E+02 0.0073 27.2 7.3 96 168-270 157-269 (303)
60 KOG0189 Phosphoadenosine phosp 21.3 2.2E+02 0.0047 27.5 5.5 58 180-248 62-122 (261)
61 TIGR00696 wecB_tagA_cpsF bacte 21.2 5.6E+02 0.012 23.4 8.2 65 175-252 36-107 (177)
62 COG1618 Predicted nucleotide k 21.2 4.8E+02 0.01 24.3 7.5 95 167-268 81-176 (179)
63 cd01989 STK_N The N-terminal d 20.1 91 0.002 26.3 2.6 25 171-195 11-35 (146)
No 1
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=2.8e-104 Score=797.40 Aligned_cols=391 Identities=75% Similarity=1.229 Sum_probs=349.0
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|||++|+.||++|+.|+++|+|+++|+|.+++++||+++|++++++|+++|++||||++||...++.+..|+++|+|||+
T Consensus 17 m~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~~~~~l~k~~~S~n~ 96 (409)
T TIGR00127 17 MTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEARVEEFKLKKMWKSPNG 96 (409)
T ss_pred HHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccH
Confidence 89999999999999999999999999999999999999999999999999999999999998644335556678999999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||+.||||+|+|||.+++++++.|++..|++++||||||.|.++|+.+.++|++|..|.+.++..++.....++...++
T Consensus 97 ~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~~~~~~~~~~~~~~~~ 176 (409)
T TIGR00127 97 TIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGTQKVTLKVYDFEEGGG 176 (409)
T ss_pred HHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCCcccceeeeeccCCCC
Confidence 99999999999999988898888899999999999999999999999999999999999977653322212222221146
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
++.+.++|+++++||+|+||+||++|+++||+|||+|||+.+||+|+++|+||++++||++|++++|++++++||++||+
T Consensus 177 v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~~I~~~~~lVDa~~m~ 256 (409)
T TIGR00127 177 VAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEALGIWYEHRLIDDMVAQ 256 (409)
T ss_pred eEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCCCEEEEEeeHHHHHHH
Confidence 67677899999999999999999999999999999999999999999999999657999999999999999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCC-CcccChhHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG-ETSTNSIASIFAW 319 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk-~i~ANP~a~IlS~ 319 (395)
||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+||||||+++++|||| ++ |||+|+|||+
T Consensus 257 lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~iaGk~~~-ANP~A~IlS~ 335 (409)
T TIGR00127 257 ALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQKGQETS-TNSIASIFAW 335 (409)
T ss_pred HhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhCCCCCc-cChHHHHHHH
Confidence 999999999999999999999999999999999999999998634688999999998888888996 77 9999999999
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhc
Q 016110 320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 392 (395)
Q Consensus 320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~ 392 (395)
+|||+|+|+++.+..+.++|++|++||..|+++|++|+||+..+.|+.++.++.++|+||+|+|+++|+++|+
T Consensus 336 ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~~T~Dl~~~~GG~~~~~~~~~~T~e~~daV~~~L~~~~~ 408 (409)
T TIGR00127 336 SRGLAHRAKLDNNPELSKFANILESACINTVEAGIMTKDLALILGGSPVERSAYLNTEEFIDAVEERLKKKIA 408 (409)
T ss_pred HHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCCcccccccccCCCcccCCCCcCHHHHHHHHHHHHHHHhc
Confidence 9999999988766668899999999999999999999999210006333445569999999999999988775
No 2
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-104 Score=797.13 Aligned_cols=390 Identities=73% Similarity=1.207 Sum_probs=354.2
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|+|++|+.||++|+.++++|+|+++++|.++++++|+++|++++++|++++++||||++||..+++.+++|+++|+|||+
T Consensus 20 m~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~~~~~~~l~~~~~S~n~ 99 (413)
T PTZ00435 20 MTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEARVKEFNLKKMWKSPNG 99 (413)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCchH
Confidence 89999999999999999999999999999999999999999999999999999999999998643335667788999999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||+.||||+|+||+.++++|++.|+++.|++++||||||.|.++|+.+.++|+.+..|.+.+|.++.+..+++|.. ++
T Consensus 100 ~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g~~~~~~~~~~~~~-~~ 178 (413)
T PTZ00435 100 TIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADGSEPQRVDVFDFKG-GG 178 (413)
T ss_pred HHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCCCcceeeeeeccCC-CC
Confidence 99999999999999877899998899999999999999999999999999999989999987665555555666654 56
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
++.+.++||++++||+|+||+||++|+++||+|||+|||+.+||+|+++|+|||+++||++|++++|++++++||++||+
T Consensus 179 v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~~I~~~~~lVDa~~m~ 258 (413)
T PTZ00435 179 VAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKAGLWYEHRLIDDMVAQ 258 (413)
T ss_pred eeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccCCEEEEEeeHHHHHHH
Confidence 66668999999999999999999999989999999999999999999999999855799999999999999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCC-CcccChhHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG-ETSTNSIASIFAW 319 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk-~i~ANP~a~IlS~ 319 (395)
||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+||||||++++||||| ++ |||+|+|||+
T Consensus 259 lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~iaGk~~~-ANP~A~Ils~ 337 (413)
T PTZ00435 259 AIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQHQKGKETS-TNSIASIFAW 337 (413)
T ss_pred HhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhhhcCCCCc-cChHHHHHHH
Confidence 999999999999999999999999999999999999999998512899999999998888888996 67 9999999999
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCC-cCCcccccCHHHHHHHHHHHHHHHhc
Q 016110 320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGS-KMTREHYLNTEEFIDAVADDLRARLS 392 (395)
Q Consensus 320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~-~~~~~~~~sT~e~~daV~~~l~~~l~ 392 (395)
+|||+|||+++.+..+.++|++|++||..|+++|++|+|||....|+ ++++++.++|+||+|+|+++|.++|.
T Consensus 338 ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~~T~Dlg~~~~G~~~~~~~~~~~T~e~~daV~~~L~~~~~ 411 (413)
T PTZ00435 338 TRGLAHRAKLDNNQELVKFCQALERSCIETIEAGFMTKDLAICVHGSSKVTRSDYLNTEEFIDKVAEKLKKKLG 411 (413)
T ss_pred HHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCCccccccccCCCccccCCCCcCHHHHHHHHHHHHHHHhc
Confidence 99999999888777789999999999999999999999996100041 23455679999999999999988874
No 3
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2e-103 Score=800.68 Aligned_cols=393 Identities=82% Similarity=1.309 Sum_probs=363.9
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|+|+||+.|+++|+.++++|+|+++|+|.+++++||+.+|++++++|++++|++|||++||...++.|+++++.|+|||+
T Consensus 88 m~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~ 167 (483)
T PLN03065 88 MTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNG 167 (483)
T ss_pred chHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccH
Confidence 89999999999999999999999999999999999999999999999999999999999998766678889889999999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||+.||||+|+|||.++++|++.|+|..||+|.|||+||.|.+.|+.+.++|++++.|.+++|+++.+..+++|.+ ++
T Consensus 168 tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~-~g 246 (483)
T PLN03065 168 TIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKG-PG 246 (483)
T ss_pred HHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999987655555556654 57
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
++.++++|+++++||+|+||+||++|+++||++||+||||.+||+|+++|+||++++|..+|++++|+++|++||+|||+
T Consensus 247 va~~~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~ 326 (483)
T PLN03065 247 VALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAY 326 (483)
T ss_pred eEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHH
Confidence 88778999999999999999999999999999999999999999999999999977887788888999999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
||++|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+||||||||+.+|+||+++|||+|+|||++
T Consensus 327 lvk~P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~a 406 (483)
T PLN03065 327 AVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWT 406 (483)
T ss_pred HHhCCCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999974479999999999988888999996699999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhccC
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGK 394 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~~~ 394 (395)
|||+|+|+++.|..+.++|++|++||.+|+++|++|+||+...+|+..++++.++|+||+|+|+++|+.+|.++
T Consensus 407 mmL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~~L~~~~~~~ 480 (483)
T PLN03065 407 RGLEHRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLATKRGEP 480 (483)
T ss_pred HHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCcccCCCCcCHHHHHHHHHHHHHHHhccC
Confidence 99999999998889999999999999999999999999962222422224456999999999999999998875
No 4
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1e-101 Score=778.31 Aligned_cols=385 Identities=73% Similarity=1.169 Sum_probs=332.6
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|+|.+|++++++|++++++|+|+++++|+++++++|+.+|++++++++++|++||||++||..+++.+.++.++++|+|+
T Consensus 18 i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~~~~~~~~~~~~~s~n~ 97 (402)
T PRK08299 18 MTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEARVKEFNLKKMWKSPNG 97 (402)
T ss_pred chHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCcccccccCccccccCchH
Confidence 78999999999999999999999999999999999999999999999999999999999996321111123345889999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
.|||+||||+|+||+++++++++.|++..|++||||||||+|+|+++.+.+++.....|....|. +.+.+..++.+ .+
T Consensus 98 ~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g~-~~e~~~~~~~~-~~ 175 (402)
T PRK08299 98 TIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDGE-PIEHEVHDFPG-AG 175 (402)
T ss_pred HHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCCCc-cccceeccccc-Cc
Confidence 99999999999999988988877777777999999999999999998877777666666543331 11112221111 24
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
+++..++||++++||+|+||+||++|+++||+|||+|||+.+||||+++|+|||+++||++|.+++|++++++||++||+
T Consensus 176 ~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~~i~~~~~~vDa~~~~ 255 (402)
T PRK08299 176 VAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAAGITYEHRLIDDMVAS 255 (402)
T ss_pred eeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccCcEEEEEeeHHHHHHH
Confidence 44434599999999999999999999999999999999999999999999999845899999999999999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+||||||||++||||||++|||+|+|||++
T Consensus 256 lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~~IaGk~~~ANP~A~IlS~a 335 (402)
T PRK08299 256 ALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKGEETSTNPIASIFAWT 335 (402)
T ss_pred HHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccccccCCCCccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998862389999999999888888999994499999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHh
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 391 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l 391 (395)
|||+|||+++.+..+.++|++|++||..|+++|++|+|||....|. .+.+||+||+|+|+++|...|
T Consensus 336 mML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~~T~Dlg~~~g~~----~g~~tT~e~~daIi~~l~~~~ 402 (402)
T PRK08299 336 RGLAHRGKLDGNPELVKFADTLEKVCIETVESGFMTKDLALLVGPD----QKWLTTEEFLDAIDENLEKAL 402 (402)
T ss_pred HHHHHhCCccccchHHHHHHHHHHHHHHHHHcCCcCccchhccCCC----CCCcCHHHHHHHHHHHHHhhC
Confidence 9999999887777789999999999999999999999995110020 025899999999999997664
No 5
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-100 Score=746.14 Aligned_cols=310 Identities=23% Similarity=0.245 Sum_probs=281.5
Q ss_pred CCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeece
Q 016110 16 PFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPI 95 (395)
Q Consensus 16 ~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi 95 (395)
.+++|+|+++++|++++++||.+||++++++++++|++||||+++|.+.+. ..+.+|+++.|||+||||+|+||+
T Consensus 32 ~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~~-----~~~~~~~ll~lRk~l~lyANlRP~ 106 (348)
T COG0473 32 FGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDPL-----PRPERGLLLALRKELDLYANLRPA 106 (348)
T ss_pred cCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCCC-----CCcccchHHHHHHhcCceeeeeec
Confidence 348999999999999999999999999999999999999999999954321 125788999999999999999997
Q ss_pred eccCCCCCCCCC--CCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHHHH
Q 016110 96 ICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESI 172 (395)
Q Consensus 96 ~~~~~~~l~~~~--~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~~ 172 (395)
+++|++++.. ++|+|||||||||+|+|.++... .+ .+++++ ++|||+++
T Consensus 107 --k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~-------------------------~~-~eva~~~~~~Tr~~~ 158 (348)
T COG0473 107 --KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRIL-------------------------GG-GEVAIDTKVITRKGS 158 (348)
T ss_pred --ccCCCCCCccCCCccEEEEeeCCCccccCCCcccc-------------------------CC-CeEEEEEEeccHHHH
Confidence 4667766554 79999999999999999765210 01 247888 99999999
Q ss_pred HHHHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-EE
Q 016110 173 RAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VW 250 (395)
Q Consensus 173 eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F-Vi 250 (395)
|||+|+|||+|++| ++|||+|||+|||+.+++|||++|+||+ ++|| +|+++|+|||+++||||++|++| ||
T Consensus 159 eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP------dv~~~~~~VD~aam~lV~~P~~FDVi 231 (348)
T COG0473 159 ERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP------DVELDHMYVDAAAMQLVRNPEQFDVI 231 (348)
T ss_pred HHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC------CcchhHHhHHHHHHHHhhCccccCEE
Confidence 99999999999999 6899999999999999999999999998 8999 89999999999999999999999 99
Q ss_pred EccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHHhcccC
Q 016110 251 ACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330 (395)
Q Consensus 251 v~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg~~~ 330 (395)
||+|||||||||+||+|+|||||+||||+|++..++||||+||||| ||||||| |||+|+|||++|||+|+|.
T Consensus 232 Vt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAP-----DIAGkgi-ANPiA~IlS~aMML~~~g~-- 303 (348)
T COG0473 232 VTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAP-----DIAGKGI-ANPIATILSAAMMLRHLGE-- 303 (348)
T ss_pred EEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcc-----cccCCCc-cChHHHHHHHHHHHHHhCC--
Confidence 9999999999999999999999999999999532699999999999 9999999 9999999999999999996
Q ss_pred CchhhHHHHHHHHHHHHHHHhc-CCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHH
Q 016110 331 NNARLLDFTEKLEAACIGTVES-GKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 389 (395)
Q Consensus 331 ~~~~l~~~A~~i~~Av~~vl~~-G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~ 389 (395)
.++|++|++||.+|+++ |++|+||| | ..+|.||+|+|+++|.+
T Consensus 304 -----~~~A~~Ie~Av~~vl~~~g~~T~Dlg----g-------~~~T~e~~d~I~~~l~~ 347 (348)
T COG0473 304 -----KEAADAIENAVEKVLAEGGIRTPDLG----G-------NATTSEVGDAIAKALAS 347 (348)
T ss_pred -----chHHHHHHHHHHHHHHcCCCCCcccC----C-------CccHHHHHHHHHHHHhc
Confidence 56999999999999995 69999998 6 67899999999999864
No 6
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.1e-95 Score=736.25 Aligned_cols=364 Identities=87% Similarity=1.334 Sum_probs=305.9
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|+|++|++++++|++++++|+|+++++|+++++++|+++|++++++|+++|++||||++||...++.|.++++.++|+|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~~~~~~~~~~~~s~n~ 99 (410)
T PLN00103 20 MTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNG 99 (410)
T ss_pred chHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCcccccccccCccccccCchH
Confidence 89999999999999999999999999999999999999999999999999999999999995432222234446899999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCC--------------------------CCCCEEEEeccCCCccccccceecCCCc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPG--------------------------WTKPICIGRHAFGDQYRATDTVIQGPGK 134 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~--------------------------~~~divivREnteg~Y~g~~~~~~~~g~ 134 (395)
+||++||||+|+|||.++++|++.|+ .++|+|||||||||+| + +...
T Consensus 100 ~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTEg~y-e--~~~~---- 172 (410)
T PLN00103 100 TIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKT-E--LEVY---- 172 (410)
T ss_pred HHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCCcee-E--EEee----
Confidence 99999999999999555555522221 3688899999999999 2 2110
Q ss_pred eeeeeecCCCCccchhhhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHH
Q 016110 135 LKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 214 (395)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva 214 (395)
.|. +..++++..++|+++++||+|+||+||++|+++||+|||+|||+.++|+|+++|+||+
T Consensus 173 ---~~~----------------g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNVlk~~dglf~~~~~eva 233 (410)
T PLN00103 173 ---NFT----------------GAGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 233 (410)
T ss_pred ---ccC----------------CCcceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhhHHHHHHHHHHHH
Confidence 011 1134445333599999999999999999999999999999999999999999999998
Q ss_pred HhhccCccccCCeEEceeeHHHHHHHHHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCc
Q 016110 215 EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 294 (395)
Q Consensus 215 ~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGS 294 (395)
+++|..+|++++|++++++||++||+||++|++|||||+|||||||||++|+++|||||+||+|+|+++..+||||+|||
T Consensus 234 ~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~HGS 313 (410)
T PLN00103 234 EAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 313 (410)
T ss_pred HhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCCCCc
Confidence 54333333355799999999999999999999999999999999999999999999999999999988523799999999
Q ss_pred ccccccc-cccCCCcccChhHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccc
Q 016110 295 VTRHYRV-HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHY 373 (395)
Q Consensus 295 AP~~~~~-dIAGk~i~ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~ 373 (395)
|||+|+. ||||||+ |||+|+|||++|||+|||+++.+..+.++|++|++||..|+++|.+|+||+....|+...+++.
T Consensus 314 Apd~~~~~diaGk~i-ANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~~T~Dl~~~~~gg~~~~~~~ 392 (410)
T PLN00103 314 VTRHYRVHQKGGETS-TNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGKMTKDLALLIHGPKVSRDQY 392 (410)
T ss_pred CcccchhhhhcCCCc-cChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCCCCcccccccCCCcccCCCC
Confidence 9964444 5999999 9999999999999999998877777899999999999999999999999941111321223345
Q ss_pred cCHHHHHHHHHHHHHHHh
Q 016110 374 LNTEEFIDAVADDLRARL 391 (395)
Q Consensus 374 ~sT~e~~daV~~~l~~~l 391 (395)
++|+||+|+|+++|+++|
T Consensus 393 ~~T~e~~daV~~~l~~~~ 410 (410)
T PLN00103 393 LNTEEFIDAVAEELKARL 410 (410)
T ss_pred cCHHHHHHHHHHHHHhhC
Confidence 899999999999998764
No 7
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-95 Score=718.49 Aligned_cols=313 Identities=21% Similarity=0.253 Sum_probs=282.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+..+.++.+.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+. +++|+++.|||
T Consensus 17 V~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~---------~~~~~~~~LR~ 87 (334)
T PRK08997 17 IIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGE---------GFTSINVTLRK 87 (334)
T ss_pred HHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCc---------CccchHHHHHH
Confidence 456667777766789999999999999999999999999999999999999999999532 35788999999
Q ss_pred hcCceEEeeceeccCCCCCCCC-CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEE
Q 016110 85 ILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 163 (395)
Q Consensus 85 ~ldlya~~RPi~~~~~~~l~~~-~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 163 (395)
+||||+|+||+++ +|++.+. .++|+|||||||||+|+|.++... +...+++
T Consensus 88 ~ldlyanvRP~k~--~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~--------------------------~~~~~a~ 139 (334)
T PRK08997 88 KFDLYANVRPVLS--FPGTKARYDNIDIITVRENTEGMYSGEGQTVS--------------------------EDGETAE 139 (334)
T ss_pred HcCCeEEEeeccc--CCCCCCccCCcCEEEEEeccCceecCccceec--------------------------CCCceEE
Confidence 9999999999864 3333322 389999999999999999754210 0012677
Q ss_pred E-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHH
Q 016110 164 S-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYA 241 (395)
Q Consensus 164 ~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~l 241 (395)
+ +++||++++||+|+||+||++|++ +||+|||+|||+.|+|+|+++|+||| ++|| +|++++++||++||+|
T Consensus 140 ~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yP------~V~~~~~~vDa~~~~l 212 (334)
T PRK08997 140 ATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVA-LRYP------DIEFEEMIVDATCMQL 212 (334)
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHH-hhCC------CeEEEeeeHHHHHHHH
Confidence 7 999999999999999999999965 69999999999999999999999997 7999 8999999999999999
Q ss_pred HhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 242 LKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 242 v~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
+++|++| ||||+|||||||||++|+++||+||+||+|+|++ .+||||+||||| ||||||| |||+|+|||++
T Consensus 213 v~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAP-----dIAGk~i-ANP~a~IlS~a 284 (334)
T PRK08997 213 VMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRD--AAIFEAVHGSAP-----DIAGKNL-ANPTSVILAAI 284 (334)
T ss_pred hhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCC--ceEEECCCCchh-----hhCCCCc-cCcHHHHHHHH
Confidence 9999999 9999999999999999999999999999999988 499999999999 9999999 99999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|||+|||+ .++|++|++||.+++++| .+|+||| | .+||+||+|+|+++|
T Consensus 285 mML~~lG~-------~~~A~~i~~AV~~vl~~G~~~T~DlG----G-------~a~T~e~~~av~~~l 334 (334)
T PRK08997 285 QMLEYLGM-------PDKAERIRKAIVAVIEAGDRTTRDLG----G-------THGTTDFTQAVIDRL 334 (334)
T ss_pred HHHHHcCC-------hhHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHHhhC
Confidence 99999996 689999999999999999 5799998 6 699999999999875
No 8
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=3.6e-95 Score=726.18 Aligned_cols=312 Identities=25% Similarity=0.265 Sum_probs=284.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+-++.++.+.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|... .++|+|+.|||
T Consensus 56 V~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~---------~~~s~~~~LRk 126 (372)
T PLN00118 56 IAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGK---------GHRSLNLTLRK 126 (372)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccc---------cccCchHHHHH
Confidence 345667777777899999999999999999999999999999999999999999998532 36788999999
Q ss_pred hcCceEEeeceeccCCCCCCCC-CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEE
Q 016110 85 ILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 163 (395)
Q Consensus 85 ~ldlya~~RPi~~~~~~~l~~~-~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 163 (395)
+||||+|+||+++ +|++.+. .++|+|||||||||+|+|.++.. .++++.
T Consensus 127 ~ldLyaNvRPvr~--~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~----------------------------~~gv~~ 176 (372)
T PLN00118 127 ELGLYANVRPCYS--LPGYKTRYDDVDLVTIRENTEGEYSGLEHQV----------------------------VRGVVE 176 (372)
T ss_pred HcCCeeeeccccc--CCCccCcccCceEEEEEecCCCcccceeeec----------------------------cCCeEE
Confidence 9999999999864 3433333 38999999999999999976421 034666
Q ss_pred E-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHH
Q 016110 164 S-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYA 241 (395)
Q Consensus 164 ~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~l 241 (395)
+ +++||+++|||+|+||+||++|++ +||+|||+|||+.|||+|+++|+||+ ++|| +|++++++||++||+|
T Consensus 177 ~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva-~eyP------dI~~~~~~VDa~a~~L 249 (372)
T PLN00118 177 SLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVA-EKYP------EIVYEEVIIDNCCMML 249 (372)
T ss_pred EEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHH-hhCC------CceEEeeeHHHHHHHh
Confidence 7 999999999999999999999975 69999999999999999999999997 7999 8999999999999999
Q ss_pred HhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 242 LKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 242 v~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
|++|++| ||||+|||||||||++|+++||+||+||+|||+++ ++||||+||||| ||||||| |||+|+|||++
T Consensus 250 v~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAP-----dIAGk~i-ANP~A~IlS~a 322 (372)
T PLN00118 250 VKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAP-----DIAGKNL-ANPTALLLSAV 322 (372)
T ss_pred ccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChh-----hhCCCCC-cCcHHHHHHHH
Confidence 9999999 99999999999999999999999999999999986 599999999999 9999999 99999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|||+|||+ .++|++|++||..++++| ++|+||| | .+||+||+|+|+++|
T Consensus 323 mML~~lG~-------~~~A~~I~~Av~~~l~~G~~~T~DlG----G-------~~sT~e~~dav~~~l 372 (372)
T PLN00118 323 MMLRHLKL-------NEQAEQIHNAILNTIAEGKYRTADLG----G-------SSTTTDFTKAICDHL 372 (372)
T ss_pred HHHHHcCC-------hHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHHhhC
Confidence 99999995 789999999999999999 8999998 7 689999999999875
No 9
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=5e-95 Score=723.18 Aligned_cols=311 Identities=18% Similarity=0.210 Sum_probs=278.2
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+.+ . ..+.+++++.|||+||||+|+||++
T Consensus 35 ~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~~--~---~~~~~~~~l~LR~~ldLyaNvRP~k 109 (352)
T PRK08194 35 GLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLVP--D---HISLWGLLIKIRREFEQVINIRPAK 109 (352)
T ss_pred CCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcCC--C---CCCchhhHHHHHHHcCCEEEEEeee
Confidence 6899999999999999999999999999999999999999999985221 0 0123345899999999999999997
Q ss_pred c-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHHHHH
Q 016110 97 C-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIR 173 (395)
Q Consensus 97 ~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~~e 173 (395)
. ++++ |++...++|+|||||||||+|+|.++.... +..+++++ ++|||+++|
T Consensus 110 ~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~-------------------------g~~~~a~~~~~~Tr~~~e 164 (352)
T PRK08194 110 QLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHR-------------------------GEDEIAIQNAVFTRKGTE 164 (352)
T ss_pred cCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccC-------------------------CccceEEEEEEeeHHHHH
Confidence 5 5555 444334899999999999999997532110 11346777 999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-EEEc
Q 016110 174 AFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWAC 252 (395)
Q Consensus 174 Riar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F-Viv~ 252 (395)
||+|+||++|++|+++||+|||+|||+.+++||+++|+||| ++|| +|++++++||++||+||++|++| ||||
T Consensus 165 RI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva-~~yp------~V~~~~~~vDa~~~~Lv~~P~~fDVIVt 237 (352)
T PRK08194 165 RAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVG-KDYP------EIETDSQHIDALAAFFVTRPEEFDVIVA 237 (352)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHH-hhCC------CceeeehhHHHHHHHHhhChhhCcEEEE
Confidence 99999999999997789999999999999999999999997 8999 89999999999999999999999 9999
Q ss_pred cCccccccchhhhhhcCCcccccccccCCCCc-ceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHHhcccCC
Q 016110 253 KNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDN 331 (395)
Q Consensus 253 ~NlfGDILSDl~a~l~GglGlapSanig~~~~-~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg~~~~ 331 (395)
+|||||||||++|+++|||||+||+|||+++. ++||||+||||| ||||||+ |||+|+|||++|||+|||+
T Consensus 238 ~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAP-----diAGk~i-ANP~a~IlS~amML~~lg~--- 308 (352)
T PRK08194 238 SNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAP-----DIAGKGI-ANPIGQIWTAKLMLDHFGE--- 308 (352)
T ss_pred ccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCch-----hhCCCCc-CCcHHHHHHHHHHHHHcCC---
Confidence 99999999999999999999999999997642 489999999999 9999999 9999999999999999996
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 332 NARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 332 ~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
.++|++|++||.+++++|++|+||| | .+||+||+|+|+++|+
T Consensus 309 ----~~~A~~i~~Av~~~l~~g~~T~DlG----G-------~~~T~e~~~ai~~~l~ 350 (352)
T PRK08194 309 ----EELGSHLLDVIEDVTEDGIKTPDIG----G-------RATTDEVTDEIISRLK 350 (352)
T ss_pred ----hhHHHHHHHHHHHHHHcCCCcCcCC----C-------CcCHHHHHHHHHHHHh
Confidence 7899999999999999999999998 6 6899999999999993
No 10
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=8.2e-95 Score=729.60 Aligned_cols=333 Identities=17% Similarity=0.144 Sum_probs=286.1
Q ss_pred HHHHHHHHhcC----CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchh
Q 016110 6 WKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGT 81 (395)
Q Consensus 6 ~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~ 81 (395)
.++.++.+.+. +++|+|+++++|+++++++|++||++++++|+++|++||||+++|.... ..... ...++++.
T Consensus 62 ~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~~--~~~~~-~~e~~ll~ 138 (409)
T PLN02329 62 ISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWDK--NEKHL-RPEMALFY 138 (409)
T ss_pred HHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCCC--Ccccc-cccccHHH
Confidence 34444444422 5899999999999999999999999999999999999999999985321 00000 01256999
Q ss_pred HhhhcCceEEeeceec-cCCC---CCCCC--CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccc
Q 016110 82 IRNILNGTVFREPIIC-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNF 155 (395)
Q Consensus 82 LRk~ldlya~~RPi~~-~~~~---~l~~~--~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 155 (395)
|||+||||+|+||++. ++++ |+++. .++|+|||||||||+|+|.++.... . +
T Consensus 139 LRk~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~--------~-~------------- 196 (409)
T PLN02329 139 LRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITI--------N-E------------- 196 (409)
T ss_pred HHHHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceec--------c-c-------------
Confidence 9999999999999975 5555 34332 3799999999999999997531100 0 0
Q ss_pred cCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeH
Q 016110 156 TGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLI 234 (395)
Q Consensus 156 ~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~V 234 (395)
.+ .+++++ ++|||+++|||+|+||+||++|+++||+|||+|||+ +++||+++|+||| ++|| +|++++++|
T Consensus 197 ~~-~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA-~eyP------dV~~~~~~V 267 (409)
T PLN02329 197 NG-EEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALA-SEYP------DVELSHMYV 267 (409)
T ss_pred CC-ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHH-hhCC------CcccchhHH
Confidence 01 356778 999999999999999999999988999999999999 9999999999997 8999 899999999
Q ss_pred HHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChh
Q 016110 235 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSI 313 (395)
Q Consensus 235 Da~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~ 313 (395)
|++||+||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ++||||+||||| ||||||+ |||+
T Consensus 268 Da~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSAP-----dIAGk~i-ANP~ 340 (409)
T PLN02329 268 DNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSAP-----DIAGQDK-ANPL 340 (409)
T ss_pred HHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCch-----hhcCCcc-cChH
Confidence 99999999999999 99999999999999999999999999999999986 589999999999 9999999 9999
Q ss_pred HHHHHHHHHHHH-hcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhc
Q 016110 314 ASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 392 (395)
Q Consensus 314 a~IlS~ammL~~-lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~ 392 (395)
|+|||++|||+| ||+ .++|++|++||.+|+++|++|+||+.. .| +.++|+||+|+|+++|+++|+
T Consensus 341 A~ILS~amML~~~Lg~-------~~~A~~I~~AV~~vl~~g~~T~Dl~~~-Gg------~~~~T~e~~daIi~~l~~~~~ 406 (409)
T PLN02329 341 ATILSAAMLLKYGLGE-------EKAAKRIEDAVVDALNKGFRTGDIYSP-GN------KLVGCKEMGEEVLKSVDSKVP 406 (409)
T ss_pred HHHHHHHHHHhhhCCC-------HHHHHHHHHHHHHHHHcCCcCcccccC-CC------CccCHHHHHHHHHHHHHhhCC
Confidence 999999999999 996 789999999999999999999999310 04 138999999999999999886
Q ss_pred c
Q 016110 393 G 393 (395)
Q Consensus 393 ~ 393 (395)
.
T Consensus 407 ~ 407 (409)
T PLN02329 407 A 407 (409)
T ss_pred C
Confidence 4
No 11
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-94 Score=714.53 Aligned_cols=305 Identities=25% Similarity=0.239 Sum_probs=277.8
Q ss_pred HHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhc
Q 016110 7 KSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNIL 86 (395)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~l 86 (395)
...++.+.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|. .|+++.|||+|
T Consensus 18 ~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------------~~~~~~LR~~l 84 (330)
T PRK14025 18 PAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------------ADVIVKLRRIL 84 (330)
T ss_pred HHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc-------------cchHHHHHHHc
Confidence 44556666678999999999999999999999999999999999999999998873 25689999999
Q ss_pred CceEEeeceec-cCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-
Q 016110 87 NGTVFREPIIC-KNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS- 164 (395)
Q Consensus 87 dlya~~RPi~~-~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~- 164 (395)
|||+|+||+++ ++++.. ..++|+|||||||||+|+|.++.. .++++.+
T Consensus 85 dlyanvRP~r~~pg~~~~--~~~iD~vivREnteG~Y~g~~~~~----------------------------~~~~~~~~ 134 (330)
T PRK14025 85 DTYANVRPVKSYKGVKCL--YPDIDYVIVRENTEGLYKGIEAEI----------------------------ADGVTVAT 134 (330)
T ss_pred CCeEEEEEeecCCCCCCc--cCCcCEEEEEECCCceecCccccc----------------------------CCCceEEe
Confidence 99999999865 444421 137999999999999999976521 0345666
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC----CC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQK----KW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 239 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r----~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~ 239 (395)
++|||++++||+|+||+||++| ++ +||+|||+|||+.|||+|+++|+||| ++|| +|++++++||++||
T Consensus 135 ~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva-~~yp------~i~~~~~~vDa~~~ 207 (330)
T PRK14025 135 RVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVA-KEYP------DIKAEDYYVDAMNM 207 (330)
T ss_pred EeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHH-hhCC------CeEEEeeeHHHHHH
Confidence 9999999999999999999999 44 69999999999999999999999997 7999 89999999999999
Q ss_pred HHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHH
Q 016110 240 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFA 318 (395)
Q Consensus 240 ~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS 318 (395)
+||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| ||||||+ |||+|+|||
T Consensus 208 ~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAP-----diAGk~i-ANP~a~IlS 279 (330)
T PRK14025 208 YIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDK--YGLFEPVHGSAP-----DIAGKGI-ANPTATILT 279 (330)
T ss_pred HHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCC--cceeEcCCCCch-----hhCCCCC-cCcHHHHHH
Confidence 999999999 9999999999999999999999999999999988 489999999999 9999999 999999999
Q ss_pred HHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 319 WSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 319 ~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
++|||+|||+ .++|++|++||.+|+++|++|+||| | .+||+||+|+|+++|
T Consensus 280 ~ammL~~lG~-------~~~A~~I~~Av~~vl~~g~~T~DlG----G-------~~~T~e~~~av~~~~ 330 (330)
T PRK14025 280 AVLMLRHLGE-------NEEADKVEKALEEVLALGLTTPDLG----G-------NLSTMEMAEEVAKRV 330 (330)
T ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHHHHhC
Confidence 9999999996 6899999999999999999999998 6 689999999999874
No 12
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2e-94 Score=718.23 Aligned_cols=372 Identities=34% Similarity=0.467 Sum_probs=342.6
Q ss_pred CchHHHHHHHHHHhcCCCceE-EEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcc
Q 016110 1 MTRVFWKSIKDKLIFPFLELD-IKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPN 79 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~ 79 (395)
|+|+||+.||++|+.|+++++ |++||+|.+++++|++.+.-|+++++++++|++|||+.||+..+++|++|++.|+|||
T Consensus 9 mtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk~~w~sPN 88 (393)
T PLN00096 9 MTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLKKAWGSPN 88 (393)
T ss_pred HHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchhhhcCCCc
Confidence 899999999999999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCc-eEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCC
Q 016110 80 GTIRNILNG-TVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGE 158 (395)
Q Consensus 80 ~~LRk~ldl-ya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (395)
.+||+.||. .+++.||.++++| |+|..+|+|.|+..+|.|.. ++.+.++|++++.|.|++|+.+....+++|++.
T Consensus 89 gtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~~~~f~~~ 164 (393)
T PLN00096 89 GAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVDDRTITDD 164 (393)
T ss_pred HHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEEEEecCCC
Confidence 999999999 9999999999885 79999999999999999999 999999999999999998877888889999844
Q ss_pred cceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCcccc-----CCeEEceee
Q 016110 159 GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA-----AGIWYEHRL 233 (395)
Q Consensus 159 ~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~-----~~I~~~~~~ 233 (395)
++++..+++|.+.++||+|+||+||++|+++||++||+|||++++|+|+ +|+||++++|+++|++ .+|+++|++
T Consensus 165 ~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~V~~e~~l 243 (393)
T PLN00096 165 LNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSGDELVHLL 243 (393)
T ss_pred CeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCceEEEeee
Confidence 7888889999999999999999999999999999999999999999997 9999986899877777 467899999
Q ss_pred HHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCC--Cc-ceEEecccCcccccccccccCCC-c
Q 016110 234 IDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD--GK-TIEAEAAHGTVTRHYRVHQKGGE-T 308 (395)
Q Consensus 234 VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~--~~-~a~FEp~HGSAP~~~~~dIAGk~-i 308 (395)
||+|+|+||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +++|||+|||||++++++..||+ +
T Consensus 244 IDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~~~Gk~~~ 323 (393)
T PLN00096 244 SDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEARLRGEETS 323 (393)
T ss_pred HHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhhhcCCCCc
Confidence 999999999999999 9999999999999999999999999999999954 52 48999999999954444444995 8
Q ss_pred ccChhHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 309 STNSIASIFAWSRGLAHRAKLDNNA-RLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 309 ~ANP~a~IlS~ammL~~lg~~~~~~-~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|||+|+|||++|||+|+++++++. .+.++|++|++||.+|+++|.+|+||+ |. ..++|+||+|+|+++|
T Consensus 324 -ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~~T~DL~----g~-----~~~tT~ef~daI~~~L 393 (393)
T PLN00096 324 -LNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGRGTRDLC----GA-----GGLTTEQFIDAVAEEL 393 (393)
T ss_pred -cChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCCcCcCCC----CC-----CCCCHHHHHHHHHHhC
Confidence 999999999999999997665432 578899999999999999999999996 30 1589999999999875
No 13
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=1.6e-94 Score=720.07 Aligned_cols=311 Identities=20% Similarity=0.207 Sum_probs=277.4
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+.+ . ....+++|+.|||+||||+|+||++
T Consensus 35 ~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~--~---~~~~~~~~l~LRk~ldLyaNvRP~~ 109 (352)
T TIGR02089 35 GFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP--D---HISLWGLLLKIRREFDQYANVRPAK 109 (352)
T ss_pred CcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC--C---ccCchhhHHHHHHHcCCeEEEEEee
Confidence 5899999999999999999999999999999999999999999985321 0 0123456999999999999999997
Q ss_pred c-cCCC-CCCCC--CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHHH
Q 016110 97 C-KNVP-RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDES 171 (395)
Q Consensus 97 ~-~~~~-~l~~~--~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~ 171 (395)
+ ++++ |+++. .++|+|||||||||+|+|.++... + | ...+++++ +++||++
T Consensus 110 ~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~-----------~------------~~~~~a~~~~~~tr~~ 165 (352)
T TIGR02089 110 LLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-R-----------G------------TDEEVATQNAIFTRKG 165 (352)
T ss_pred cCCCCCCccccccCCCCCEEEEEecCCccccccccccc-C-----------C------------ccceeEEEeEEecHHH
Confidence 5 5665 44431 389999999999999999753211 0 0 01356777 9999999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-EE
Q 016110 172 IRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VW 250 (395)
Q Consensus 172 ~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F-Vi 250 (395)
++||+|+||+||++|++|||+|||+|||+.++|||+++|+||+ ++|| +|++++++||++||+||++|++| ||
T Consensus 166 ~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva-~~yp------~v~~~~~~vD~~~~~lv~~P~~fDVi 238 (352)
T TIGR02089 166 VERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVA-AEYP------DVEWDSYHIDALAARFVLKPETFDVI 238 (352)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHH-hhCC------CceEeeehHHHHHHHHhcChhhCcEE
Confidence 9999999999999997789999999999999999999999997 8999 89999999999999999999999 99
Q ss_pred EccCccccccchhhhhhcCCcccccccccCCCCc-ceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHHhccc
Q 016110 251 ACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKL 329 (395)
Q Consensus 251 v~~NlfGDILSDl~a~l~GglGlapSanig~~~~-~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg~~ 329 (395)
||+|||||||||++|+++|||||+||+|||+++. ++||||+||||| ||||||+ |||+|+|||++|||+|||+
T Consensus 239 vt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAP-----diAGk~i-ANP~a~Ils~amML~~lg~- 311 (352)
T TIGR02089 239 VASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAP-----DIAGKGI-ANPIGAIWTAAMMLEHLGE- 311 (352)
T ss_pred EecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCch-----hhcCCCc-cCcHHHHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999997642 489999999999 9999999 9999999999999999996
Q ss_pred CCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 330 DNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 330 ~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
.++|++|++||.+++++|++|+||| | .+||+||+|+|+++|
T Consensus 312 ------~~~A~~I~~Av~~~l~~g~~T~DlG----G-------~~sT~e~~~ai~~~l 352 (352)
T TIGR02089 312 ------KEAGAKIMDAIERVTAAGILTPDVG----G-------KATTSEVTEAVCNAL 352 (352)
T ss_pred ------hhHHHHHHHHHHHHHHcCCccCCCC----C-------CcCHHHHHHHHHhhC
Confidence 7899999999999999999999998 6 689999999999875
No 14
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=6.2e-94 Score=726.08 Aligned_cols=331 Identities=21% Similarity=0.210 Sum_probs=285.5
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|.++|+++|+++|++++++|+++|++||||+++|... .|+|+|+.|||+||||+|+||++
T Consensus 57 ~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~~---------~~~s~~l~LRk~ldLyaNvRPvk 127 (412)
T PRK06451 57 DREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIGK---------GWKSINVAIRLMLDLYANIRPVK 127 (412)
T ss_pred CCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCc---------CCcChhHHHHHHcCCeEeeceee
Confidence 369999999999999999999999999999999999999999999532 47899999999999999999986
Q ss_pred c-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCcee-eeeecC-CCCccchhhhccccCCcceEEE-eeeCHHH
Q 016110 97 C-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLK-LVFVPE-GKDEKTELEVYNFTGEGGVALS-MYNTDES 171 (395)
Q Consensus 97 ~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~ 171 (395)
+ ++++ |+++..++|+|||||||||+|+|.++....++... ..|..+ .+. ....+++++ +++|+++
T Consensus 128 ~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~t~~~ 197 (412)
T PRK06451 128 YIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELGV----------EVEDDTGIGIKLISKFK 197 (412)
T ss_pred cCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccccccccc----------ccccceecceeeeeHHH
Confidence 5 4555 44333489999999999999999886533221100 011100 000 001345677 9999999
Q ss_pred HHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccC--------------ccccCCeEEceeeHHH
Q 016110 172 IRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKS--------------KFEAAGIWYEHRLIDD 236 (395)
Q Consensus 172 ~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~--------------~~~~~~I~~~~~~VDa 236 (395)
++||+|+||+||++|++ +||+|||+|||+.|+|+|+++|+||++++||+ +|++++|++++++||+
T Consensus 198 ~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa 277 (412)
T PRK06451 198 TQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNYNGVPPSGKVIINDRIADN 277 (412)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhccccccccCceEEEeeeHHH
Confidence 99999999999999975 79999999999999999999999998558985 6677789999999999
Q ss_pred HHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHH
Q 016110 237 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIAS 315 (395)
Q Consensus 237 ~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~ 315 (395)
+||+||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ +||||+||||| ||||||+ |||+|+
T Consensus 278 ~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~--alFEpvHGSAP-----diAGk~i-ANP~a~ 349 (412)
T PRK06451 278 MFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTG--GMFEAIHGTAP-----KYAGKNV-ANPTGI 349 (412)
T ss_pred HHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCC--ceeECCCCCcc-----ccCCCCC-cCcHHH
Confidence 999999999999 99999999999999999999999999999999885 89999999999 9999999 999999
Q ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 316 IFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 316 IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|||++|||+|||+ .++|++|++||.+++++|++|+||+....| +.++|+||+|+|+++|
T Consensus 350 IlS~amML~~lg~-------~~~A~~I~~Av~~vl~~G~~T~Dl~~~~gg------~~~~T~e~~daI~~~l 408 (412)
T PRK06451 350 IKGGELMLRFMGW-------DKAADLIDKAIMESIKQKKVTQDLARFMGV------RALSTTEYTDELISII 408 (412)
T ss_pred HHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCccccccCCC------CccCHHHHHHHHHHHH
Confidence 9999999999996 789999999999999999999999511003 2489999999999998
No 15
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=3.2e-93 Score=710.05 Aligned_cols=311 Identities=21% Similarity=0.188 Sum_probs=275.2
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|++||++++++|+++|++||||+++|.....+ ...+.+++ ++.|||+||||+|+||++
T Consensus 30 ~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~--~~~~~~~~-~~~LR~~ldlyanvRP~r 106 (349)
T TIGR00169 30 GLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP--RDQRPEQG-LLKLRKSLDLFANLRPAK 106 (349)
T ss_pred CCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC--ccccchhh-HHHHHHHcCCeEEEEEee
Confidence 689999999999999999999999999999999999999999998532100 00011233 899999999999999997
Q ss_pred c-cCCC---CCCCC--CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCH
Q 016110 97 C-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTD 169 (395)
Q Consensus 97 ~-~~~~---~l~~~--~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr 169 (395)
+ ++++ |+++. .++|+|||||||||+|+|.++..... +..+++++ ++|||
T Consensus 107 ~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~------------------------~~~~~a~~~~~~Tr 162 (349)
T TIGR00169 107 VFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGA------------------------GGEGEAWDTEVYTK 162 (349)
T ss_pred ccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCC------------------------CCcceEEEEEEeeH
Confidence 5 5655 34332 37999999999999999976421100 01356777 99999
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-
Q 016110 170 ESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 248 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F- 248 (395)
+++|||+|+||+||++|+++||+|||+|||+ ++|+|+++|+||+ ++|| +|++++++||++||+||++|++|
T Consensus 163 ~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva-~~yP------~I~~~~~~vDa~~~~Lv~~P~~fD 234 (349)
T TIGR00169 163 PEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIA-KEYP------DVELEHQYIDNAAMQLVKSPTQFD 234 (349)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHH-hhCC------CceEEeeeHHHHHHHHHhCccCce
Confidence 9999999999999999988999999999999 9999999999997 7999 89999999999999999999999
Q ss_pred EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH-hc
Q 016110 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH-RA 327 (395)
Q Consensus 249 Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~-lg 327 (395)
||||+|||||||||++|+++||+||+||+|||+++ .+||||+||||| ||||||+ |||+|+|||++|||+| ||
T Consensus 235 Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAP-----diAGk~i-ANP~a~IlS~amML~~~lg 307 (349)
T TIGR00169 235 VVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAP-----DIAGKGI-ANPIAQILSAAMMLRYSFN 307 (349)
T ss_pred EEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChh-----HhcCCCC-CChHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999775 599999999999 9999999 9999999999999999 78
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 328 KLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 328 ~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
+ .++|++|++||.+|+++|++|+||| | .++|+||+++|++.|
T Consensus 308 ~-------~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~t~e~t~av~~~~ 349 (349)
T TIGR00169 308 L-------EEAADAIEAAVKKVLAEGYRTPDLG----S-------SATTEVGTAEMGEEL 349 (349)
T ss_pred C-------HHHHHHHHHHHHHHHHcCCCccccC----C-------CcchHHHHHHHHhcC
Confidence 5 7899999999999999999999998 6 689999999999764
No 16
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=2.3e-93 Score=728.24 Aligned_cols=319 Identities=24% Similarity=0.222 Sum_probs=285.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccC-CCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIR 83 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G-~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LR 83 (395)
|..+.++.+.+.+++|+|+++++|.++|+++| +++|++++++|++++++||||+++|.+. +++|+|+.||
T Consensus 15 V~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~---------~~~s~~~~LR 85 (473)
T TIGR02924 15 IMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGG---------GHKSLNVTLR 85 (473)
T ss_pred HHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCcc---------CcccHHHHHH
Confidence 45677788887889999999999999999995 8999999999999999999999999642 4678899999
Q ss_pred hhcCceEEeeceeccCC-CCCCCC-CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcce
Q 016110 84 NILNGTVFREPIICKNV-PRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 161 (395)
Q Consensus 84 k~ldlya~~RPi~~~~~-~~l~~~-~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (395)
|.||||+|+||++. + |.+.+. .++|+|||||||||+|+|+++... .++
T Consensus 86 k~ldLYANvRPv~~--~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~----------------------------~~~ 135 (473)
T TIGR02924 86 KTLGLYANIRPCVS--YHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT----------------------------PDT 135 (473)
T ss_pred HHcCCeEEEEEeec--cCCCCCCccCCcCEEEEEeccCceecCceeecc----------------------------CCh
Confidence 99999999999854 3 223222 389999999999999999865321 234
Q ss_pred EEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHH
Q 016110 162 ALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 239 (395)
Q Consensus 162 a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~ 239 (395)
+.+ ++|||+++|||+|+||+||++|+| |||++||+|||+.|||+|+++|+||| ++|| +|++++++||++||
T Consensus 136 ~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva-~eyP------dI~~e~~~VDa~a~ 208 (473)
T TIGR02924 136 YECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIA-AEYP------DIESEHYIVDIGMA 208 (473)
T ss_pred heEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHH-hhCC------CcEEeeHHHHHHHH
Confidence 556 999999999999999999999975 69999999999999999999999997 7999 89999999999999
Q ss_pred HHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHH
Q 016110 240 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFA 318 (395)
Q Consensus 240 ~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS 318 (395)
+|+++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+||||| ||||||+ |||+|+|||
T Consensus 209 ~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~~--amFEpvHGSAP-----dIAGk~i-ANP~a~IlS 280 (473)
T TIGR02924 209 RLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEEY--AMFEAVHGSAP-----DIAGQNI-ANPSGLLNA 280 (473)
T ss_pred HHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCCc--ceeecCCCchh-----hhCCCCc-cChHHHHHH
Confidence 999999999 99999999999999999999999999999999884 89999999999 9999999 999999999
Q ss_pred HHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHH
Q 016110 319 WSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 389 (395)
Q Consensus 319 ~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~ 389 (395)
++|||+|||+ .++|++|++||.+|+++|++|+||++. | .+...++|+||+|+|+++|.+
T Consensus 281 aamML~hLG~-------~~~A~~I~~AV~~vl~~G~~T~Dl~~~--~---~~gg~~sT~e~~daVi~~l~~ 339 (473)
T TIGR02924 281 AIQMLVHIGQ-------SDIAQLIYNAWLKTLEDGVHTADIYNE--K---TSKQKVGTKEFAEAVTANLGK 339 (473)
T ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCcccccc--c---cCCCCcCHHHHHHHHHHHhcc
Confidence 9999999996 689999999999999999999999621 1 001268999999999999965
No 17
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.5e-93 Score=727.82 Aligned_cols=321 Identities=23% Similarity=0.241 Sum_probs=287.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccC-CCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIR 83 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G-~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LR 83 (395)
|-++.++.+.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||+++|... +++|+|+.||
T Consensus 19 V~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~---------~~~s~~~~LR 89 (482)
T PRK09222 19 IMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGG---------GYKSLNVTLR 89 (482)
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCcc---------CccchHHHHH
Confidence 44667778888889999999999999999987 7999999999999999999999999532 4688999999
Q ss_pred hhcCceEEeeceeccCC-CCCCCC-CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcce
Q 016110 84 NILNGTVFREPIICKNV-PRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 161 (395)
Q Consensus 84 k~ldlya~~RPi~~~~~-~~l~~~-~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (395)
|.||||+|+||++. + |++.+. .++|+|||||||||+|+|+++.. .+++
T Consensus 90 k~ldLYaNvRP~r~--~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~----------------------------~~~~ 139 (482)
T PRK09222 90 KTLGLYANVRPCVS--YHPFVETKHPNLDVVIIRENEEDLYAGIEHRQ----------------------------TPDV 139 (482)
T ss_pred HHcCCeEEeeeEEe--cCCCCCCCCCCcCEEEEEeccCCeeccceeec----------------------------CCCe
Confidence 99999999999864 3 333222 38999999999999999986531 1346
Q ss_pred EEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHH
Q 016110 162 ALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 239 (395)
Q Consensus 162 a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~ 239 (395)
+.+ ++|||+++|||+|+||+||++|++ |||++||+|||+.|||||+++|+||| ++|| +|++++++||++||
T Consensus 140 ~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva-~eyP------dI~~~~~~VDa~a~ 212 (482)
T PRK09222 140 YQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIA-KEYP------DIEAEHYIVDIGAA 212 (482)
T ss_pred eeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHH-hhCC------CceEeeeeHHHHHH
Confidence 667 999999999999999999999975 69999999999999999999999997 7999 89999999999999
Q ss_pred HHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHH
Q 016110 240 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFA 318 (395)
Q Consensus 240 ~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS 318 (395)
+|+++|++| ||||+|||||||||++|+++||+||+||+|||++ .+||||+||||| ||||||| |||+|+|||
T Consensus 213 ~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~--~amFEpvHGSAP-----dIAGk~i-ANP~a~IlS 284 (482)
T PRK09222 213 RLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEE--YAMFEAVHGSAP-----DIAGKNI-ANPSGLLNA 284 (482)
T ss_pred HHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCC--ceeeECCCCCch-----hhcCCCc-cCcHHHHHH
Confidence 999999999 9999999999999999999999999999999988 499999999999 9999999 999999999
Q ss_pred HHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHh
Q 016110 319 WSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 391 (395)
Q Consensus 319 ~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l 391 (395)
++|||+|||+ .++|++|++||.+|+++|++|+||+ |... ....++|+||+|+|+++|.++.
T Consensus 285 aamML~hlG~-------~~~A~~I~~Av~~tl~~G~~T~Dl~----g~~~-~~~~~~T~e~~~aVi~~l~~~p 345 (482)
T PRK09222 285 AVMMLVHIGQ-------FDIAELIENAWLKTLEDGIHTADIY----NEGV-SKKKVGTKEFAEAVIENLGQKP 345 (482)
T ss_pred HHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCCCcccC----CCCC-CCCCcCHHHHHHHHHHHHhcCc
Confidence 9999999996 6899999999999999999999996 3100 0125899999999999997554
No 18
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.5e-92 Score=703.98 Aligned_cols=306 Identities=22% Similarity=0.224 Sum_probs=276.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+.+..++.+.+.+++|+|+++++|.+ |.++|++++++|+++|++||||+++|.+. +.+|+|+.||+
T Consensus 45 V~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~~---------~~~s~~l~LR~ 110 (360)
T PLN00123 45 VTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVGG---------GVSSLNVQLRK 110 (360)
T ss_pred HHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCCc---------CccchHHHHHH
Confidence 45667777878889999999999986 68999999999999999999999999532 35678999999
Q ss_pred hcCceEEeeceeccCCCCCCCC-CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEE
Q 016110 85 ILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 163 (395)
Q Consensus 85 ~ldlya~~RPi~~~~~~~l~~~-~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 163 (395)
+||||+|+||+++ +|++... .++|+|||||||||+|+|.++.. ..+++.
T Consensus 111 ~ldLyaNvRP~k~--~pg~~~~~~~iD~viVREnteG~Y~g~~~~~----------------------------~~g~~~ 160 (360)
T PLN00123 111 ELDLFASLVNCFN--LPGLPTRHENVDIVVIRENTEGEYSGLEHEV----------------------------VPGVVE 160 (360)
T ss_pred HcCCEEEEEEeec--CCCCCCccCCCCEEEEEeCCCceeccceeec----------------------------CCCceE
Confidence 9999999999864 3443332 38999999999999999975421 024566
Q ss_pred E-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHH
Q 016110 164 S-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYA 241 (395)
Q Consensus 164 ~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~l 241 (395)
+ ++|||+++|||+|+||+||++|++ |||+|||+|||+.++|||+++|+||+ ++|| +|++++++||++||+|
T Consensus 161 ~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva-~eyP------dV~~~~~~VDa~~~~L 233 (360)
T PLN00123 161 SLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVA-KKYP------GIKYNEIIVDNCCMQL 233 (360)
T ss_pred EEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHH-hhCC------CceEeeeeHHHHHHHH
Confidence 7 999999999999999999999854 69999999999999999999999997 7999 8999999999999999
Q ss_pred HhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEeccc--Ccc--cccccccccCCCcccChhHHH
Q 016110 242 LKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH--GTV--TRHYRVHQKGGETSTNSIASI 316 (395)
Q Consensus 242 v~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~H--GSA--P~~~~~dIAGk~i~ANP~a~I 316 (395)
|++|++| ||||+|||||||||++|+++|||||+||+|||++ .+||||+| ||| | ||||||| |||+|+|
T Consensus 234 v~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEpvh~hGSA~~P-----dIAGk~i-ANP~a~I 305 (360)
T PLN00123 234 VSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAD--HAVFEQGASAGNVGNE-----KLVEQKK-ANPVALL 305 (360)
T ss_pred hhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCC--ceEEEecccCCCcCCc-----cccCCCc-cChHHHH
Confidence 9999999 9999999999999999999999999999999988 49999976 999 9 9999999 9999999
Q ss_pred HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 317 FAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 317 lS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
||++|||+|||+ .++|++|++||.+++++| ++|+||| | .+||+||+|+|+++|
T Consensus 306 lS~amML~~lG~-------~~~A~~I~~AV~~~l~~G~~~T~DlG----G-------~~sT~e~~~ai~~~l 359 (360)
T PLN00123 306 LSSAMMLRHLQF-------PSFADRLETAVKRVIAEGKYRTKDLG----G-------SSTTQEVVDAVIANL 359 (360)
T ss_pred HHHHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHHHhh
Confidence 999999999996 789999999999999999 8999998 6 689999999999987
No 19
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-92 Score=704.46 Aligned_cols=305 Identities=19% Similarity=0.178 Sum_probs=272.2
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.... ..+.+|+++.|||+||||+|+||++
T Consensus 34 ~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~------~~~~~~~~~~LRk~ldLyaNvRP~r 107 (344)
T PRK03437 34 GPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS------GVLERGLLLKLRFALDHYVNLRPSK 107 (344)
T ss_pred CCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC------CCcccchHHHHHHHcCCeEEEEEee
Confidence 7899999999999999999999999999999999999999999985221 0125677999999999999999987
Q ss_pred c-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHHHHH
Q 016110 97 C-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIR 173 (395)
Q Consensus 97 ~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~~e 173 (395)
. ++++ |++...++|+|||||||||+|+|.+.... +| ...+++++ ++|||++++
T Consensus 108 ~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~-~~-----------------------~~~~~a~~~~~~Tr~~~~ 163 (344)
T PRK03437 108 LYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALR-VG-----------------------TPHEVATEVSVNTAFGVE 163 (344)
T ss_pred cCCCCCCcCCCCCCCCEEEEEECCCccccCCccccc-CC-----------------------CcceeEEEEEEecHHHHH
Confidence 5 5555 44333489999999999999999753211 00 01456778 999999999
Q ss_pred HHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-EEE
Q 016110 174 AFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWA 251 (395)
Q Consensus 174 Riar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F-Viv 251 (395)
||+|+||+||++|++ +||+|||+|||+.|+|||+++|+||+ ++|| +|++++++||++||+||++|++| |||
T Consensus 164 RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------dV~~~~~~vDa~~~~Lv~~P~~fDVIV 236 (344)
T PRK03437 164 RVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVA-AEYP------DVTVDYQHVDAATIFMVTDPSRFDVIV 236 (344)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHH-hhCC------CceEeehhHHHHHHHHhcCcccCcEEE
Confidence 999999999999964 69999999999999999999999997 8999 89999999999999999999999 999
Q ss_pred ccCccccccchhhhhhcCCcccccccccCCCCc-ceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHHhcccC
Q 016110 252 CKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 330 (395)
Q Consensus 252 ~~NlfGDILSDl~a~l~GglGlapSanig~~~~-~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg~~~ 330 (395)
|+|||||||||++|+++||+||+||+|+|+++. ++||||+||||| ||||||| |||+|+|||++|||+|||+
T Consensus 237 t~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAP-----diAGk~i-ANP~a~IlS~amML~~lg~-- 308 (344)
T PRK03437 237 TDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAP-----DIAGQGI-ADPTAAILSVALLLDHLGE-- 308 (344)
T ss_pred EcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCch-----hhcCCCc-cChHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999997642 589999999999 9999999 9999999999999999996
Q ss_pred CchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 331 NNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 331 ~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
.++|++|++||.+++++| +| | .+||+||+|+|+++|
T Consensus 309 -----~~~a~~I~~Av~~~l~~g-----~g----g-------~~~T~e~~~ai~~~l 344 (344)
T PRK03437 309 -----EDAAARIEAAVEADLAER-----GK----M-------GRSTAEVGDRIAARL 344 (344)
T ss_pred -----HHHHHHHHHHHHHHHHhc-----CC----C-------CcCHHHHHHHHHhhC
Confidence 789999999999999998 44 5 689999999999875
No 20
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-92 Score=705.67 Aligned_cols=312 Identities=21% Similarity=0.204 Sum_probs=278.6
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|.++++++|++||++++++|+++|++||||+++|.....+ ...++.+| |+.|||+||||+|+||++
T Consensus 33 ~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~~~--~~~~~~~~-~~~LR~~ldlyanvRP~r 109 (358)
T PRK00772 33 GFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDNLP--PDVRPERG-LLALRKELGLFANLRPAK 109 (358)
T ss_pred CCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCCCC--ccCCChhh-HHHHHHHcCCeEEEeEee
Confidence 689999999999999999999999999999999999999999999532100 00113456 899999999999999997
Q ss_pred c-cCCC---CCCCC--CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCH
Q 016110 97 C-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTD 169 (395)
Q Consensus 97 ~-~~~~---~l~~~--~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr 169 (395)
+ ++++ |+++. .++|+|||||||||+|+|.++.... + .+ .+++++ ++|||
T Consensus 110 ~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~------------~-----------~~-~~~a~~~~~iTr 165 (358)
T PRK00772 110 LYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREG------------L-----------GG-EERAFDTMVYTR 165 (358)
T ss_pred cCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccC------------C-----------CC-ceeEEEEEEeeH
Confidence 5 5665 44433 2799999999999999997642210 0 01 356777 99999
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-
Q 016110 170 ESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 248 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F- 248 (395)
++++||+|+||+||++|+++||+|||+|||+ ++|+|+++|+||+ ++|| +|++++++||+++|+|+++|++|
T Consensus 166 ~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva-~eyp------~i~~~~~~vDa~~~~lv~~P~~fD 237 (358)
T PRK00772 166 EEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVA-KEYP------DVELSHMYVDNAAMQLVRNPKQFD 237 (358)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHH-hHCC------CceEEEEeHHHHHHHHhhCcccCe
Confidence 9999999999999999988999999999999 8999999999997 7999 89999999999999999999999
Q ss_pred EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH-hc
Q 016110 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH-RA 327 (395)
Q Consensus 249 Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~-lg 327 (395)
||||+|||||||||++|+++||+||+||+|||+++ .+||||+||||| ||||||+ |||+|+|||++|||+| ||
T Consensus 238 Viv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSAp-----diAGk~~-aNP~a~Ils~ammL~~~lg 310 (358)
T PRK00772 238 VIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAP-----DIAGKGI-ANPIATILSAAMMLRYSLG 310 (358)
T ss_pred EEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchh-----hhcCCCC-cCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999886 599999999999 9999999 9999999999999999 99
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhcCCCcccc---hhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 328 KLDNNARLLDFTEKLEAACIGTVESGKMTKDL---ALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 328 ~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl---~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
+ .++|++|++||.+++++|++|+|| | | .++|+||+|+|+++|.
T Consensus 311 ~-------~~~a~~i~~Av~~~l~~g~~T~Dl~~~g----g-------~~~T~e~~~av~~~l~ 356 (358)
T PRK00772 311 L-------EEAADAIEAAVEKVLAQGYRTADIAEGG----G-------KVSTSEMGDAILAALA 356 (358)
T ss_pred C-------HHHHHHHHHHHHHHHHcCCcCcccccCC----C-------CcCHHHHHHHHHHHhh
Confidence 6 789999999999999999999999 5 5 7899999999999985
No 21
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=3.1e-92 Score=700.09 Aligned_cols=312 Identities=21% Similarity=0.220 Sum_probs=281.8
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhH
Q 016110 3 RVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTI 82 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~L 82 (395)
+-+++..++.+.+.+++|+|+++++|++ +++|+++|++++++|+++|++||||+++|...+ .++|+|+.|
T Consensus 16 pEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~--------~~~s~~~~l 85 (333)
T TIGR00175 16 PEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKG--------GHRSLNVAL 85 (333)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccc--------cccchhHHH
Confidence 3467788888888899999999999997 578999999999999999999999999985321 268899999
Q ss_pred hhhcCceEEeeceeccCCCCCCCC-CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcce
Q 016110 83 RNILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 161 (395)
Q Consensus 83 Rk~ldlya~~RPi~~~~~~~l~~~-~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (395)
|++||||+|+||++. +|++.+. .++|+|||||||||+|+|.++.. .+++
T Consensus 86 R~~ldlyanvRP~k~--~pg~~~~~~~iD~vivREnteG~Y~g~~~~~----------------------------~~~~ 135 (333)
T TIGR00175 86 RKELDLYANVVHCKS--LPGFKTRHEDVDIVIIRENTEGEYSGLEHES----------------------------VPGV 135 (333)
T ss_pred HHHcCCEEEeEEecC--CCCCCCCCCCcCEEEEEEeCCCcccceeEec----------------------------cCCe
Confidence 999999999999854 4444333 37999999999999999975421 0346
Q ss_pred EEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHH
Q 016110 162 ALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 239 (395)
Q Consensus 162 a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~ 239 (395)
+.+ +++||++++||+|+||+||++|++ |||++||+|||+.+||+|+++|+||+ ++|| +|++++++||+++|
T Consensus 136 ~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------~v~~~~~~vDa~~~ 208 (333)
T TIGR00175 136 VESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVA-KEYP------DITFESMIVDNTCM 208 (333)
T ss_pred EEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHH-HHCC------CCeeeeeeHHHHHH
Confidence 667 999999999999999999999975 59999999999999999999999997 7899 89999999999999
Q ss_pred HHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecc-cCcccccccccccCCCcccChhHHHH
Q 016110 240 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA-HGTVTRHYRVHQKGGETSTNSIASIF 317 (395)
Q Consensus 240 ~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~-HGSAP~~~~~dIAGk~i~ANP~a~Il 317 (395)
+||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +||||+ ||||| ||||||+ |||+|+||
T Consensus 209 ~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~~--a~fEp~~hGSAp-----diaGk~i-aNP~a~Il 280 (333)
T TIGR00175 209 QLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDY--AVFEPGVRHTGP-----DIAGQNI-ANPTALIL 280 (333)
T ss_pred HHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCCC--ceEeccCCCCch-----hhCCCCc-cChHHHHH
Confidence 999999999 99999999999999999999999999999999884 899995 59999 9999999 99999999
Q ss_pred HHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 318 AWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 318 S~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|++|||+|||+ .++|++|++||.+++++| ++|+||| | .+||+||+|+|+++|
T Consensus 281 s~ammL~~lG~-------~~~a~~i~~Av~~~l~~G~~~T~DlG----G-------~~~T~e~~~ai~~~l 333 (333)
T TIGR00175 281 SSVMMLNHLGL-------KEHADRIQKAVLSTIAEGKNRTKDLG----G-------TATTSDFTEAVIKRL 333 (333)
T ss_pred HHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCccChhcC----C-------CcCHHHHHHHHHhhC
Confidence 99999999995 789999999999999999 8999998 6 689999999999875
No 22
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-91 Score=710.39 Aligned_cols=335 Identities=21% Similarity=0.219 Sum_probs=281.4
Q ss_pred CCceEEEEEecchhhhhccCC--CCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeec
Q 016110 17 FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREP 94 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~--~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RP 94 (395)
+++|+|+++++|.++++++|+ ++|++++++|++++++||||+++|.+. +++|+|+.||++||||+|+||
T Consensus 53 ~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~~---------~~~s~~l~LR~~ldLyaNvRP 123 (409)
T PRK07006 53 ERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVGG---------GIRSLNVALRQELDLYVCLRP 123 (409)
T ss_pred CCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCCc---------CccChHHHHHHHcCCEEEEEE
Confidence 369999999999999999999 999999999999999999999999532 367889999999999999999
Q ss_pred eec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCC-ceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHH
Q 016110 95 IIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPG-KLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDE 170 (395)
Q Consensus 95 i~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~ 170 (395)
+++ ++++ |++...++|+|||||||||+|+|.++....++ .....|..... .... +....+.+++ +++|++
T Consensus 124 vk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~a~~~~v~Tr~ 197 (409)
T PRK07006 124 VRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEM----GVKK--IRFPETSGIGIKPVSEE 197 (409)
T ss_pred EecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeecccccc----Cccc--ccccccceEEEEEecHH
Confidence 975 6666 44432389999999999999999875322111 11111111000 0000 0011346677 999999
Q ss_pred HHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCcccc-------------CCeEEceeeHHH
Q 016110 171 SIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA-------------AGIWYEHRLIDD 236 (395)
Q Consensus 171 ~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~-------------~~I~~~~~~VDa 236 (395)
++|||+|+||+||++|++ +||+|||+|||+.|||+|++++.|||+++||++|.. ++|++++++||+
T Consensus 198 ~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa 277 (409)
T PRK07006 198 GTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWDKIKNPETGKEIIVKDSIADA 277 (409)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCceeehHHHHH
Confidence 999999999999999965 799999999999999999998889985579544433 389999999999
Q ss_pred HHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHH
Q 016110 237 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIAS 315 (395)
Q Consensus 237 ~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~ 315 (395)
+||+||++|++| ||||+|||||||||++|+++|||||+||+|+|++ .+||||+||||| ||||||+ |||+|+
T Consensus 278 ~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~--~a~FEpvHGSAP-----diAGk~i-ANP~a~ 349 (409)
T PRK07006 278 FLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDG--HAIFEATHGTAP-----KYAGLDK-VNPGSV 349 (409)
T ss_pred HHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCC--ceEEECCCCcch-----hhCCCCC-cChHHH
Confidence 999999999999 9999999999999999999999999999999976 499999999999 9999999 999999
Q ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhc-CCcCCcccccCHHHHHHHHHHHH
Q 016110 316 IFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIH-GSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 316 IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~-G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|||++|||+|||+ .++|++|++||.+++++|++|+||+.... | +.++|+||+|+|+++|
T Consensus 350 IlS~amML~~lG~-------~~~A~~Ie~Av~~~l~~G~~T~Dl~~~~~gg------~~~~T~e~~daI~~~l 409 (409)
T PRK07006 350 ILSAEMMLRHMGW-------TEAADLIIKSMEKTIASKTVTYDFARLMEGA------TEVKCSEFGDALIKNM 409 (409)
T ss_pred HHHHHHHHHHcCC-------HHHHHHHHHHHHHHHhcCCccccccccCCCC------cccCHHHHHHHHHhhC
Confidence 9999999999996 68999999999999999999999951100 3 2489999999999875
No 23
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-92 Score=678.18 Aligned_cols=312 Identities=25% Similarity=0.315 Sum_probs=290.3
Q ss_pred HHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHh
Q 016110 4 VFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIR 83 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LR 83 (395)
-|.+++++.|-+..++|+|+.+|++...-..++..+|+++++++++..++||||+.||.+. +.+|+|++||
T Consensus 49 Ei~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~k---------gh~S~nl~LR 119 (365)
T KOG0785|consen 49 EISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGK---------GHRSLNLALR 119 (365)
T ss_pred HHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCcccc---------ccccHHHHHH
Confidence 3678999999999999999999998865444888999999999999999999999999865 5789999999
Q ss_pred hhcCceEEeeceeccCCCCCCCCC-CCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceE
Q 016110 84 NILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 162 (395)
Q Consensus 84 k~ldlya~~RPi~~~~~~~l~~~~-~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a 162 (395)
|+|+||+|+|| |+++++++..+ ++|+|+|||||||+|+|+||.+. ++|+
T Consensus 120 K~f~LyANVRP--c~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vv----------------------------pGVv 169 (365)
T KOG0785|consen 120 KEFGLYANVRP--CKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVV----------------------------PGVV 169 (365)
T ss_pred HHhchhcccee--cccccCCcCCCCCceEEEEecCCccccccceeecc----------------------------ccHH
Confidence 99999999999 57888888766 89999999999999999998532 4577
Q ss_pred EE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 163 LS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 163 ~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
.+ +.||+.+++||++|||+||++++| +||++||+|||+.+||||+++|+|++ ++|| +|.++++++|+||++
T Consensus 170 qsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a-~~y~------dI~~eE~~lDt~~l~ 242 (365)
T KOG0785|consen 170 QSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVA-KKYP------DIKFEEQYLDTCCLK 242 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHh-hhCC------ccchhHHHHHHHHHH
Confidence 77 999999999999999999999976 79999999999999999999999996 8999 899999999999999
Q ss_pred HHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHH
Q 016110 241 ALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW 319 (395)
Q Consensus 241 lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ 319 (395)
|+++|..| |+|+||||||||||+||+|+||||++||+||| ++ .++|||+||||| |||||++ |||+|++||+
T Consensus 243 lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAP-----DIAGkdl-ANPtAlllS~ 314 (365)
T KOG0785|consen 243 LVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAP-----DIAGKDL-ANPTALLLSA 314 (365)
T ss_pred HhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CC-eeeeecccCCCc-----ccccCCc-CCcHHHHHHH
Confidence 99999999 99999999999999999999999999999999 54 589999999999 9999999 9999999999
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
+|||+|+| +++.|+.|+.||.+++++| ++|+||| | .++|+||+++|+++|
T Consensus 315 vmMLrhm~-------l~~~A~~I~~Av~~ti~eg~~rT~DLG----G-------ka~~seft~aVc~~l 365 (365)
T KOG0785|consen 315 VMMLRHMG-------LNDQADQIESAVFKTIAEGKIRTPDLG----G-------KATTSEFTDAVCDRL 365 (365)
T ss_pred HHHHHHcC-------chhHHHHHHHHHHHHHhccCccCcccC----C-------CccchHHHHHHHhcC
Confidence 99999998 4789999999999999999 8999998 7 799999999999875
No 24
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=3.9e-91 Score=708.99 Aligned_cols=336 Identities=21% Similarity=0.236 Sum_probs=281.0
Q ss_pred CCceEEEEEecchhhhhccC--CCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeec
Q 016110 17 FLELDIKYFDLGLPNRDATD--DKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREP 94 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G--~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RP 94 (395)
+++|+|+++++|+++|+++| ++||++++++|+++|++||||+++|... +++|+|+.||+.||||+|+||
T Consensus 60 ~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~~---------~~~s~~l~LR~~ldLyaNvRP 130 (416)
T TIGR00183 60 EKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVGG---------GIRSLNVALRQELDLYVCLRP 130 (416)
T ss_pred CCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCCc---------cccCcHHHHHHHcCCEEEEeE
Confidence 36999999999999999999 9999999999999999999999999532 468899999999999999999
Q ss_pred eec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCcee-eeeecCCCCccchhhhccccCCcceEEE-eeeCHH
Q 016110 95 IIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLK-LVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDE 170 (395)
Q Consensus 95 i~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~ 170 (395)
++. ++++ |++...++|+|||||||||+|+|.++....++..+ +.|....+. . ....+ +.+++++ +++|++
T Consensus 131 ~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~g-~---~~~~~--~~~~a~~~~~~tr~ 204 (416)
T TIGR00183 131 VRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFLQNELG-V---KKIRF--PEDSGIGIKPISEE 204 (416)
T ss_pred eecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeecccccccC-c---ccccc--ccccEEEEEEecHH
Confidence 965 6666 44322389999999999999999876432222111 111111000 0 00001 1346777 999999
Q ss_pred HHHHHHHHHHHHHHhCC-CCEEEEeCCCccccccHHHHHHHHHHHHhhccCcccc-------------CCeEEceeeHHH
Q 016110 171 SIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA-------------AGIWYEHRLIDD 236 (395)
Q Consensus 171 ~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~-------------~~I~~~~~~VDa 236 (395)
+++||+|+||+||++|+ ++||+|||+|||+.|||+|+++|.|||+++||.+|++ ++|++++++||+
T Consensus 205 ~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa 284 (416)
T TIGR00183 205 GTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGLWDKYKNPNPGKEIVIKDRIADA 284 (416)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhccccccccCcccCCceeEeehhHHH
Confidence 99999999999999995 4799999999999999999999889984468322211 289999999999
Q ss_pred HHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHH
Q 016110 237 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIAS 315 (395)
Q Consensus 237 ~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~ 315 (395)
+||+||++|++| ||||+|||||||||++|+++|||||+||+|||++ .+||||+||||| ||||||+ |||+|+
T Consensus 285 ~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~--~alFEp~HGSAP-----diAGk~i-ANP~a~ 356 (416)
T TIGR00183 285 FLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDE--IGIFEATHGTAP-----KYAGQDK-VNPGSI 356 (416)
T ss_pred HHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCC--ceEEECCCCCch-----hhcCCCC-CCcHHH
Confidence 999999999999 9999999999999999999999999999999987 499999999999 9999999 999999
Q ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 316 IFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 316 IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|||++|||+|||+ .++|++|++||.+|+++|++|+||+..+.|. +.++|+||+|+|+++|
T Consensus 357 IlS~amML~~lg~-------~~~A~~Ie~AV~~~l~~G~~T~Dl~~~~gg~-----~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 357 ILSGEMMLEHMGW-------KEAADLIKKAMEKAIASKIVTYDFARLMDGA-----KEVKCSEFAEAIIENM 416 (416)
T ss_pred HHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcccccccccCCC-----cccCHHHHHHHHHhhC
Confidence 9999999999996 7899999999999999999999994211131 1489999999999875
No 25
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=7.7e-91 Score=686.45 Aligned_cols=307 Identities=23% Similarity=0.232 Sum_probs=279.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+-+..++.+.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+. +++|+|+.|||
T Consensus 13 v~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~---------~~~s~~~~LR~ 83 (322)
T TIGR02088 13 VIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANP---------GYKSVIVTLRK 83 (322)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCC---------CccChHHHHHH
Confidence 345566666677899999999999999999999999999999999999999999999642 36788999999
Q ss_pred hcCceEEeeceec-cCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEE
Q 016110 85 ILNGTVFREPIIC-KNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 163 (395)
Q Consensus 85 ~ldlya~~RPi~~-~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 163 (395)
+||||+|+||+++ ++++...| .++|+|||||||||+|+|.++.. .++++
T Consensus 84 ~ldlyanvRP~r~~~g~~~~~~-~~iD~vivREnteG~Y~g~~~~~-----------------------------~~~a~ 133 (322)
T TIGR02088 84 ELDLYANVRPAKSLPGIPDLYP-NGKDIVIVRENTEGLYAGFEFGF-----------------------------SDRAI 133 (322)
T ss_pred HcCCEEEEEEeeccCCCCCCCC-CCCCEEEEEeCcCCeeecccccc-----------------------------CcceE
Confidence 9999999999865 45542222 27999999999999999975310 23566
Q ss_pred E-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHH
Q 016110 164 S-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYAL 242 (395)
Q Consensus 164 ~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv 242 (395)
+ +++||+++|||+|+||+||++|++|||++||+|||+.|+|||+++|+||+ ++|| |++++++||++||+||
T Consensus 134 ~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp-------v~~~~~~vDa~~~~lv 205 (322)
T TIGR02088 134 AIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIA-KRYG-------VEYRDMYVDSAAMNLV 205 (322)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHH-HhCC-------eeeeeeeHHHHHHHHh
Confidence 7 99999999999999999999999899999999999999999999999997 7998 9999999999999999
Q ss_pred hCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHH
Q 016110 243 KSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSR 321 (395)
Q Consensus 243 ~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~am 321 (395)
++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||.||||| |||||++ |||+|+|+|++|
T Consensus 206 ~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~fep~hGsa~-----diaG~~~-aNp~a~i~A~~~ 277 (322)
T TIGR02088 206 KDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDR--KALFEPVHGSAP-----DIAGKGI-ANPTAAILSVAM 277 (322)
T ss_pred hCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCC--ceEEecCCCChh-----HhCCCCC-CChHHHHHHHHH
Confidence 999999 9999999999999999999999999999999987 499999999999 9999999 999999999999
Q ss_pred HHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHH
Q 016110 322 GLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVA 384 (395)
Q Consensus 322 mL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~ 384 (395)
||+|+|+ .++|++|++||.+++++|++|+||| | .+||+||+|+|+
T Consensus 278 ~l~~~g~-------~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~~av~ 322 (322)
T TIGR02088 278 MLDYLGE-------LEKGKLVWEAVEYYIIEGKKTPDLG----G-------TAKTKEVGDEIA 322 (322)
T ss_pred HHHHcCC-------HHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHhC
Confidence 9999996 6899999999999999999999998 6 689999999985
No 26
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=6.9e-91 Score=703.23 Aligned_cols=335 Identities=20% Similarity=0.198 Sum_probs=276.9
Q ss_pred CceEEEEEecchhhhhccCC--CCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeece
Q 016110 18 LELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPI 95 (395)
Q Consensus 18 ~~i~~~~~~~G~~~~~~~G~--~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi 95 (395)
++|+|.++++|.++++++|+ +||++++++|++++++||||+++|.+. +++|+|+.|||.||||+|+||+
T Consensus 63 ~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~~---------g~~s~~l~LRk~ldLyaNvRPv 133 (474)
T PRK07362 63 RKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIGG---------GIRSLNVALRQIFDLYSCVRPC 133 (474)
T ss_pred CCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCCc---------CccchHHHHHHHcCCceeeeEe
Confidence 69999999999999999996 899999999999999999999999542 4678899999999999999999
Q ss_pred ec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCC-C-ce----eeeeecCCCCccchhhhccccCCcceEEE-ee
Q 016110 96 IC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGP-G-KL----KLVFVPEGKDEKTELEVYNFTGEGGVALS-MY 166 (395)
Q Consensus 96 ~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~-g-~~----~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~ 166 (395)
++ +++| |++...++|+|||||||||+|+|+++....+ + .+ ...+.+.... +..++ -..+++++ ++
T Consensus 134 r~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~a~~~k~ 207 (474)
T PRK07362 134 RYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHLNEEVIPASPE----LGKRQ--IPLGSGIGIKP 207 (474)
T ss_pred eccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccccccccccccccc----ccccc--cccceeeeeee
Confidence 75 5666 4443348999999999999999987542110 0 00 0001110000 00000 01346778 99
Q ss_pred eCHHHHHHHHHHHHHHHHhCC---CCEEEEeCCCccccccHHHHHHHHHHHHhhccC---------------cccc----
Q 016110 167 NTDESIRAFAEASMNTAYQKK---WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS---------------KFEA---- 224 (395)
Q Consensus 167 ~Tr~~~eRiar~AFe~A~~r~---~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~---------------~~~~---- 224 (395)
+||++++||+|+||+||++|+ ++||+|||+|||++|+|+|++|+.|||.++|++ +|++
T Consensus 208 iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~ 287 (474)
T PRK07362 208 VSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDECVTERESWILSNKEKNPNISIE 287 (474)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccCcccccc
Confidence 999999999999999999983 579999999999999999999988998434511 1111
Q ss_pred ------------------------------------------CCeEEceeeHHHHHHHHHhCCCcc-EEEccCccccccc
Q 016110 225 ------------------------------------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQS 261 (395)
Q Consensus 225 ------------------------------------------~~I~~~~~~VDa~a~~lv~~P~~F-Viv~~NlfGDILS 261 (395)
.+|.+++++||++||||+++|++| ||||+||||||||
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILS 367 (474)
T PRK07362 288 DNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIADSIFQQIQTRPQEYSILATLNLNGDYIS 367 (474)
T ss_pred ccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHHHHHHHHHHhChhhCCEEEEccccchhhh
Confidence 358899999999999999999999 9999999999999
Q ss_pred hhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHHhcccCCchhhHHHHHH
Q 016110 262 DFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEK 341 (395)
Q Consensus 262 Dl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~ 341 (395)
|++|+++|||||+||+|||++ .+||||+||||| ||||||+ |||+|+|||++|||+|||+ .++|++
T Consensus 368 DlaA~lvGglGlaPSANiG~~--~a~FEpvHGSAP-----dIAGk~i-ANP~A~ILS~aMML~~LG~-------~~~A~~ 432 (474)
T PRK07362 368 DAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAP-----KHAGLDR-INPGSVILSGVMMLEYLGW-------QEAADL 432 (474)
T ss_pred HHHHHhcCCccccceeeeCCC--ceeeecCCCCch-----hhcCCCC-cCcHHHHHHHHHHHHHcCC-------HHHHHH
Confidence 999999999999999999988 499999999999 9999999 9999999999999999996 789999
Q ss_pred HHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHH
Q 016110 342 LEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADD 386 (395)
Q Consensus 342 i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~ 386 (395)
|++||.+|+++|.+|+|||+.+.. . ...+||+||+++|+++
T Consensus 433 I~~AV~~vl~~g~~T~Dlg~~~~~--~--~~~~sT~E~~~aIi~~ 473 (474)
T PRK07362 433 ITKGLSAAIANKQVTYDLARLMEP--P--VDPLSCSEFAEAIISH 473 (474)
T ss_pred HHHHHHHHHHcCCcccCCCCcccc--C--CCCcCHHHHHHHHHhc
Confidence 999999999999999999731110 0 0258999999999976
No 27
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=1.6e-88 Score=679.25 Aligned_cols=318 Identities=28% Similarity=0.308 Sum_probs=272.8
Q ss_pred HHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCC--cchhHh
Q 016110 6 WKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKS--PNGTIR 83 (395)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s--~~~~LR 83 (395)
++.++......+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.... .++ +++.||
T Consensus 19 ~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~---------~~~~~~l~~lR 89 (348)
T PF00180_consen 19 LRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPG---------IRSENGLLKLR 89 (348)
T ss_dssp HHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSS---------HSHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccc---------cccHHHHHHHH
Confidence 344444443345999999999999999999999999999999999999999999997321 122 337899
Q ss_pred hhcCceEEeeceecc---CCC-CCCC--CCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccC
Q 016110 84 NILNGTVFREPIICK---NVP-RLIP--GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTG 157 (395)
Q Consensus 84 k~ldlya~~RPi~~~---~~~-~l~~--~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 157 (395)
+.||||+|+||++.. +.+ |+++ ..++|++||||||||+|+|.++..... +.
T Consensus 90 ~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~----------------------~~- 146 (348)
T PF00180_consen 90 KELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDG----------------------GT- 146 (348)
T ss_dssp HHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSE----------------------EE-
T ss_pred HhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeec----------------------cC-
Confidence 999999999999753 112 3432 125999999999999999988754210 00
Q ss_pred CcceEEE-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHH
Q 016110 158 EGGVALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLID 235 (395)
Q Consensus 158 ~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VD 235 (395)
.++++++ +++|+++++||+|+||++|++| +++||+|||+|||+.++ +|+++|+||++++|| +|++++++||
T Consensus 147 ~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp------~I~~~~~~vD 219 (348)
T PF00180_consen 147 PDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYP------DIEVEHMLVD 219 (348)
T ss_dssp GSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHT------TSEEEEEEHH
T ss_pred CCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcc------eeEeeeeech
Confidence 1467888 9999999999999999999999 56899999999999888 999999999844999 9999999999
Q ss_pred HHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhH
Q 016110 236 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIA 314 (395)
Q Consensus 236 a~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a 314 (395)
+++|+|+++|++| ||||+|||||||||++|+++||+||+||+|||+++ ++||||+||||| ||||||+ |||+|
T Consensus 220 ~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSAp-----diaGk~~-aNP~a 292 (348)
T PF00180_consen 220 AAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAP-----DIAGKGI-ANPIA 292 (348)
T ss_dssp HHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTG-----GGTTSSH-S-THH
T ss_pred hhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-cccccccccccc-----cccCCcc-cCcHH
Confidence 9999999999999 99999999999999999999999999999999644 699999999999 9999999 99999
Q ss_pred HHHHHHHHHHH-hcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHH
Q 016110 315 SIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAV 383 (395)
Q Consensus 315 ~IlS~ammL~~-lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV 383 (395)
+|||++|||+| ||+ +++|++|++||.+++++|++|+||| |.- .+.++|+||+|+|
T Consensus 293 ~Ils~a~mL~~~lg~-------~~~a~~i~~Av~~~l~~g~~T~Dlg----g~~---~~~~~T~e~~daV 348 (348)
T PF00180_consen 293 MILSAAMMLEHSLGL-------PEAADAIEKAVEKVLEEGIRTPDLG----GSA---TTAVSTEEFGDAV 348 (348)
T ss_dssp HHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHTTEEBGGGH----TTT---CEEBHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHcCCCCcccc----CCC---CCCCCHHHHHhhC
Confidence 99999999999 884 7899999999999999999999998 520 1346999999997
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.9e-84 Score=635.43 Aligned_cols=356 Identities=36% Similarity=0.496 Sum_probs=320.0
Q ss_pred CchHHHHHHHHHHhcCC---CceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCC
Q 016110 1 MTRVFWKSIKDKLIFPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKS 77 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s 77 (395)
|++++|+.|.+.++.++ .+|+|.++++|.++++.||+.||+|++++|+++.|++|||++||.+. +|+|
T Consensus 33 it~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg~---------g~rS 103 (407)
T COG0538 33 ITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVGK---------GWRS 103 (407)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCcccc---------cccC
Confidence 68999999999999999 99999999999999999999999999999999999999999999754 7999
Q ss_pred cchhHhhhcCceEEeeceecc-CCCCCCCC-CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccc
Q 016110 78 PNGTIRNILNGTVFREPIICK-NVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNF 155 (395)
Q Consensus 78 ~~~~LRk~ldlya~~RPi~~~-~~~~l~~~-~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 155 (395)
+|++||+.||||+|+|||++. ++|++.++ +.+|+||+||||||.|.|+||....++..++.+..+++. .+...+|
T Consensus 104 lNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~e~---~~~~i~~ 180 (407)
T COG0538 104 LNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLEDEM---GVKKIRF 180 (407)
T ss_pred chHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhccc---ccceEec
Confidence 999999999999999999985 99955555 799999999999999999999888787777666544332 1233445
Q ss_pred cCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhh--------ccCccccCC
Q 016110 156 TGEGGVALSMYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEAN--------WKSKFEAAG 226 (395)
Q Consensus 156 ~~~~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~--------yp~~~~~~~ 226 (395)
+.+.++++ +.+|+++++|++|.||+||.+++| .||++||.||||.|+|.|++|++|||+++ |.+.++..+
T Consensus 181 pe~~GIgi-kp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~~~~~~~~~~~~ 259 (407)
T COG0538 181 PEDSGIGI-KPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEVVTGKEKFELKG 259 (407)
T ss_pred CCCCceEE-EecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccccccccchhhhccC
Confidence 44456666 788999999999999999999985 79999999999999999999999999764 566777778
Q ss_pred ----eEEceeeHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccc
Q 016110 227 ----IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 301 (395)
Q Consensus 227 ----I~~~~~~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~ 301 (395)
|.++++++|+|.+|++++|+.| ||+|+||.||++||.+|+.+|||||+||+|||+. +++|||+|||||
T Consensus 260 ~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~--~~~fEA~HGTap----- 332 (407)
T COG0538 260 PKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDG--TAEFEATHGTAP----- 332 (407)
T ss_pred cCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCc--eEEEEeccCccc-----
Confidence 9999999999999999999999 9999999999999999999999999999999954 699999999999
Q ss_pred cccCCCcccChhHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHH
Q 016110 302 HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFID 381 (395)
Q Consensus 302 dIAGk~i~ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~d 381 (395)
..|||+. +||+|.|||+.|||+|+|| .++|+.|+.|+..++++|++|+||+..|.|. .+.++|+||+|
T Consensus 333 k~aG~~~-~Np~a~Ils~~~ml~~~Gw-------~eaa~li~~a~~~ti~~~~vT~DlArl~~~~----~~~v~tsEF~d 400 (407)
T COG0538 333 KYAGKDS-TNPIASILSGTMMLRHRGW-------LEAADLIEKAVEDTIESGKVTYDLARLMGGA----KRYLSTSEFAD 400 (407)
T ss_pred cccCcCC-CCcHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHhCceeHHHHHhhCCC----ccceeHHHHHH
Confidence 5679998 9999999999999999998 5789999999999999999999998877552 12799999999
Q ss_pred HHHHHHH
Q 016110 382 AVADDLR 388 (395)
Q Consensus 382 aV~~~l~ 388 (395)
+|+++|+
T Consensus 401 ~ii~~l~ 407 (407)
T COG0538 401 AIIENLK 407 (407)
T ss_pred HHHHhcC
Confidence 9999874
No 29
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-77 Score=579.99 Aligned_cols=311 Identities=22% Similarity=0.246 Sum_probs=282.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
.-.++++.|.+..+|++|+++++++ -.+.++..+++++++|+++++.|||-+-||... .+..|.|+.||+
T Consensus 57 ~~~~V~~v~~a~~~PV~fE~i~v~~--~~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~--------g~~~s~n~~LR~ 126 (375)
T KOG0784|consen 57 LTNAVREVFSAAHAPVEFEEIEVSG--SNKESSEDLDEAVESIKRNKVALKGNIETPDLP--------GGAKSLNVKLRK 126 (375)
T ss_pred HHHHHHHHHHhcCCCeeEEEEEccC--CccccchhHHHHHHHHHhcceeEeecccCCCCc--------cchhhhHHHHHH
Confidence 3467889999999999999999987 223445578999999999999999999998322 146789999999
Q ss_pred hcCceEEeeceeccCCCCCCCCC-CCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEE
Q 016110 85 ILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 163 (395)
Q Consensus 85 ~ldlya~~RPi~~~~~~~l~~~~-~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 163 (395)
+||||+|+ ++|+++|++++++ ++|+||+||||||+|+++||..+ +++..
T Consensus 127 ~LDLyanv--v~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~V----------------------------pGVVE 176 (375)
T KOG0784|consen 127 ELDLYANV--VHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESV----------------------------PGVVE 176 (375)
T ss_pred hhhhhhhe--eeeeccCCcccccCCccEEEEecCCcccccccccccC----------------------------cchhh
Confidence 99999999 4679999988887 89999999999999999998432 46777
Q ss_pred E-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHH
Q 016110 164 S-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYA 241 (395)
Q Consensus 164 ~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~l 241 (395)
+ +++|++.++||+|||||||.+.+| |||+|||||+||.+||||+++|+||+ +.|| +|+++.|+||++||||
T Consensus 177 sLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva-~~Yp------~I~~e~miVDN~~MQl 249 (375)
T KOG0784|consen 177 SLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVA-KKYP------DITFEEMIVDNACMQL 249 (375)
T ss_pred eeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHH-hcCC------CccHHHhhHHHhHHHh
Confidence 7 999999999999999999999976 79999999999999999999999998 5699 8999999999999999
Q ss_pred HhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEec--ccCcccccccccccCCCcccChhHHHHH
Q 016110 242 LKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA--AHGTVTRHYRVHQKGGETSTNSIASIFA 318 (395)
Q Consensus 242 v~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp--~HGSAP~~~~~dIAGk~i~ANP~a~IlS 318 (395)
|.+|++| |+|+|||||.|+|.+||+|+||.|+.|++|+|+++ ++||| .|++. +++||++ |||+|+|||
T Consensus 250 vs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~y--AVFE~g~r~~~~------~~~g~~~-aNPtA~lls 320 (375)
T KOG0784|consen 250 VSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDDY--AVFEPGARHTGT------SIAGKNI-ANPTAMLLS 320 (375)
T ss_pred hcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccce--EEecccccccch------hhhcccc-cCcHHHHHH
Confidence 9999999 99999999999999999999999999999999995 99999 47664 5999999 999999999
Q ss_pred HHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHH
Q 016110 319 WSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 389 (395)
Q Consensus 319 ~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~ 389 (395)
++|||+||| ++.+|++|+.||.+|+.+| ++|+||| | ..||++|+++|+.+|+.
T Consensus 321 s~~MLrHL~-------l~~~Ad~i~~Av~~vi~egk~rT~DlG----G-------~~Tt~dvi~avI~~l~~ 374 (375)
T KOG0784|consen 321 SVDMLRHLG-------LPSHADRISTAVKRVIDEGKIRTKDLG----G-------QSTTQDVIDAVIANLRC 374 (375)
T ss_pred HHHHHHHcC-------ChHHHHHHHHHHHHHHhcCcccccccC----C-------CcchHHHHHHHHHHhcc
Confidence 999999998 3789999999999999999 8999998 6 78999999999999863
No 30
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6.3e-73 Score=541.27 Aligned_cols=392 Identities=77% Similarity=1.261 Sum_probs=377.4
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|+||||+.|++|+|.|++++++.++|+|.+.+++|++.+..++.+++++++|++||++.||++.++.|++|++.|+|||.
T Consensus 29 mTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEaRv~Ef~LkkMWkSPNG 108 (422)
T KOG1526|consen 29 MTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEARVEEFNLKKMWKSPNG 108 (422)
T ss_pred HHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHHHHHHhhhHHHhcCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||..|+..+++.||.|+++|.|.|+|..+|+|-|+..++.|...+..+.++|.+++.|.|.+|.....+.+.+|++ ++
T Consensus 109 TIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg~~~~~~~V~~f~~-~G 187 (422)
T KOG1526|consen 109 TIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDGTQKVTLKVYDFKG-SG 187 (422)
T ss_pred chhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCCCCcceeEEEEecCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999888777888888887 67
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
++..+++|.+.++-+|+.+|++|.+++.++++.+|-++|+.+||.|.++|+|+++++|+.+|++.+|+|||++||+|.++
T Consensus 188 ~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~~~IwYEHRLIDDmVAq 267 (422)
T KOG1526|consen 188 VAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEALGIWYEHRLIDDMVAQ 267 (422)
T ss_pred eeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Confidence 88778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
++++-+.|||.|.|+.||.-||+.||-.|||||+.|..++||+++..-|++|||..++|+.+..|+..|.||||.|+||.
T Consensus 268 a~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTSTN~IASIFAWt 347 (422)
T KOG1526|consen 268 AMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNSIASIFAWT 347 (422)
T ss_pred HHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999998777889999999999999999999999999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhccC
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGK 394 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~~~ 394 (395)
--|.|.|.+|.|+.|..+|+.|+.|+..++++|..|.||+..++| ..+|...++|+||.|+|.++|+..|.+.
T Consensus 348 Rgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~MTKDLal~i~g-~~~r~~y~~T~eFidav~~~L~~~~~~~ 420 (422)
T KOG1526|consen 348 RGLAHRAKLDNNEALAKFANALEKACIETVESGKMTKDLALCIHG-KVERSDYLNTEEFIDAVASNLKKKLAQA 420 (422)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhccchHhHHHHhcC-CccccccccHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999877767 5778889999999999999999888764
No 31
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-70 Score=514.57 Aligned_cols=313 Identities=21% Similarity=0.184 Sum_probs=274.2
Q ss_pred CCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeece
Q 016110 16 PFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPI 95 (395)
Q Consensus 16 ~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi 95 (395)
.+++|+|++.++|+.+.+.+|.++|+|++.+-+++|+.|.|+++.|.+.. +++.+... .+.||+.|.+|+|+||+
T Consensus 34 ~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~~----~~lrpe~g-ll~ir~~lkvfanlrp~ 108 (363)
T KOG0786|consen 34 EGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK----NHLRPEMG-LLKIRRDLKVFANLRPA 108 (363)
T ss_pred cceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccCc----CCcChhhh-HHHHHHHHHHHhcCCcc
Confidence 46899999999999999999999999999999999999999998886531 11111121 36799999999999997
Q ss_pred ec-cCCC---CCCCCC--CCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeC
Q 016110 96 IC-KNVP---RLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNT 168 (395)
Q Consensus 96 ~~-~~~~---~l~~~~--~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~T 168 (395)
.+ +.+- ++++.. ++|++||||.|+|.|+|.... ++ | ++++++ .+|+
T Consensus 109 ~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~-------------en-------------g-~gva~dte~Ya 161 (363)
T KOG0786|consen 109 TVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRN-------------EN-------------G-EGVAFDTEIYA 161 (363)
T ss_pred hhhHhhhccccccHHHhcCcceEEeeeecCceeecCccc-------------CC-------------C-cceeecccccc
Confidence 54 2222 555554 899999999999999996431 11 2 578888 8999
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCC
Q 016110 169 DESIRAFAEASMNTAYQKK--WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEG 246 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~--~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~ 246 (395)
-+++.||+|.||+.|++|+ .++|++||+||+. ++.|||+.+.+..+.||| ++++.|++||+++|+||++|.
T Consensus 162 ~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP------~l~l~hqliDsAAM~Lvk~P~ 234 (363)
T KOG0786|consen 162 AHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYP------DLELSHQLIDSAAMQLVKDPK 234 (363)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCC------CcchhhhhhhHHHHHHhcCch
Confidence 9999999999999999997 6899999999998 899999999876678999 899999999999999999999
Q ss_pred cc--EEEccCccccccchhhhhhcCCcccccccccC-----CCCcceEEecccCcccccccccccCCCcccChhHHHHHH
Q 016110 247 GY--VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC-----PDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW 319 (395)
Q Consensus 247 ~F--Viv~~NlfGDILSDl~a~l~GglGlapSanig-----~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ 319 (395)
+| +|||.|+|||||||.++.+.||+||.||++++ +.+ +.+|||+||||| ||+||++ +||+|+|||+
T Consensus 235 ~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~-~gL~EPiHGSAP-----Diagk~k-vNPlaTILSA 307 (363)
T KOG0786|consen 235 QLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG-PGLFEPIHGSAP-----DIAGKDK-VNPLATILSA 307 (363)
T ss_pred hcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-CcccccCCCCCC-----CcCCCCc-cChHHHHHHH
Confidence 99 99999999999999999999999999999998 444 789999999999 9999999 9999999999
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHh
Q 016110 320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 391 (395)
Q Consensus 320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l 391 (395)
+|||.| .++ ..++|++|++||..++..|.+|.||| | ..||.+.+++|.+.+..+|
T Consensus 308 amlLky--gLn----~pkeakaIEdAV~kvLd~G~rTgDlg----g-------~~st~~~~kav~EEv~Kil 362 (363)
T KOG0786|consen 308 AMLLKY--GLN----EPKEAKAIEDAVVKVLDKGFRTGDLG----G-------PGSTLVGCKAVGEEVLKIL 362 (363)
T ss_pred HHHHHh--cCC----ChhhHHHHHHHHHHHHhccccccccC----C-------CCcchhhHHHHHHHHHHhc
Confidence 999999 466 48999999999999999999999998 5 5678888888888777665
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=95.91 E-value=0.18 Score=54.19 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=106.0
Q ss_pred ceEEEeeeCHHHHHHHHHHHHHHHHhCCCC-EEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceee-HHHH
Q 016110 160 GVALSMYNTDESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRL-IDDM 237 (395)
Q Consensus 160 ~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~-Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~-VDa~ 237 (395)
+++..+-.-..-++-+++.|.++|+..+-+ |.-.++.-. .|.-..+-+++.- ++|- -.|++++-+- +|++
T Consensus 450 DIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HDa~lI~kV~~yL-~~hd----t~gldi~Im~P~~A~ 521 (735)
T PF03971_consen 450 DIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HDAELIKKVEKYL-KDHD----TSGLDIRIMSPVEAT 521 (735)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HHHHHHHHHHHHH-TTS------TT--EEEE-HHHHH
T ss_pred cchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cHHHHHHHHHHHH-HhcC----CCCCceEeeCHHHHH
Confidence 455543334667888999999999998876 555554322 3443333333332 3332 2356666664 4554
Q ss_pred HHHH--HhCCCccEEEccCccccccchhhhhhc-C-Cc---ccccccccCCCCcceEEec-ccCcccccccccc-cCCCc
Q 016110 238 VAYA--LKSEGGYVWACKNYDGDVQSDFLAQGF-G-SL---GLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGET 308 (395)
Q Consensus 238 a~~l--v~~P~~FViv~~NlfGDILSDl~a~l~-G-gl---GlapSanig~~~~~a~FEp-~HGSAP~~~~~dI-AGk~i 308 (395)
-.-| ++.-..-+=||.|..=|+|+||..-|- | |- -+.|=-| .+ ++||. +.||||++..+=+ -|.=.
T Consensus 522 ~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhLR 596 (735)
T PF03971_consen 522 RFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMN---GG--GLFETGAGGSAPKHVQQFVEENHLR 596 (735)
T ss_dssp HHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTT---S---EEEES-SS---HHHHHHHCCCS---
T ss_pred HHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceeccCCCCCccHHHHHHHHcCccc
Confidence 3333 333333377999999999999997662 2 22 2222222 22 79999 7899998763322 23334
Q ss_pred ccChhHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC
Q 016110 309 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 353 (395)
Q Consensus 309 ~ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G 353 (395)
=+.+|-+|+.+--|+||+....|....-.|+.|..|+.+.|+++
T Consensus 597 -WDSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ 640 (735)
T PF03971_consen 597 -WDSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENN 640 (735)
T ss_dssp ---THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred -ccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 68899999999999999988888888889999999999999876
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=95.43 E-value=0.38 Score=51.75 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-EEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceee-HHHHHH--HHHhC
Q 016110 169 DESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRL-IDDMVA--YALKS 244 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~~~-Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~-VDa~a~--~lv~~ 244 (395)
..-++-+++.|.++|+..+-+ |.-.++.-. .|.-..+-++..- ++|- -.|+.++-+- ++++-. .-+++
T Consensus 463 D~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL-~~hd----t~gldi~Im~p~~A~~~slerir~ 534 (741)
T TIGR00178 463 DAPIQDWVKLAVTRARATGTPAVFWLDPARA---HDAQLIKKVETYL-KDHD----TEGLDIQILSPVEATRFSLARIRR 534 (741)
T ss_pred CchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hHHHHHHHHHHHH-HhcC----CCCCceEeeCHHHHHHHHHHHHHc
Confidence 446788999999999998876 555554322 2332222223222 3331 1256666553 444432 23334
Q ss_pred CCccEEEccCccccccchhhhhhc-CC----cccccccccCCCCcceEEec-ccCcccccccccc-cCCCcccChhHHHH
Q 016110 245 EGGYVWACKNYDGDVQSDFLAQGF-GS----LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGETSTNSIASIF 317 (395)
Q Consensus 245 P~~FViv~~NlfGDILSDl~a~l~-Gg----lGlapSanig~~~~~a~FEp-~HGSAP~~~~~dI-AGk~i~ANP~a~Il 317 (395)
-..-+=||.|..=|+|+||..-|- |. |-+.|=-| .+ ++||. +.||||++..+=+ -|.=. =+.+|-+|
T Consensus 535 G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhLR-WDSLGEFl 608 (741)
T TIGR00178 535 GEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GG--GLFETGAGGSAPKHVQQFLEENHLR-WDSLGEFL 608 (741)
T ss_pred CCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceecCCCCCCccHHHHHHHHcCccc-ccchhhHH
Confidence 333477999999999999987752 21 12222222 22 69999 7899998764322 34444 78899999
Q ss_pred HHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC
Q 016110 318 AWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 353 (395)
Q Consensus 318 S~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G 353 (395)
+.+--|+||+....|+...-.|+.|..|+.+.|+++
T Consensus 609 ALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ 644 (741)
T TIGR00178 609 ALAASLEHLGNATGNPKALVLADTLDAATGKLLDNN 644 (741)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 999999999988888778888999999999999875
No 34
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=93.57 E-value=0.05 Score=54.25 Aligned_cols=137 Identities=20% Similarity=0.070 Sum_probs=66.4
Q ss_pred eeeCHHHHHHHHHHHHHHHHh-CC--CCEEEEeCCCccccccHHHH-H----HHHHHHHhhccCccccCCeEEc-eeeHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQ-KK--WPLYLSTKNTILKKYDGRFK-D----IFQEVYEANWKSKFEAAGIWYE-HRLID 235 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~-r~--~~Vt~v~KaNvl~~t~glf~-~----~~~eva~~~yp~~~~~~~I~~~-~~~VD 235 (395)
..+|.+.+.+-++...+.-++ -+ ++-..|-==|=-.--.|+|= | +.-.|.+..-. +|.+. ..--|
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~------gi~v~GP~paD 223 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEARAE------GIDVFGPYPAD 223 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHT------THEEEEEE-HH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhC------CCceECCCccH
Confidence 457888888888877665555 22 22223322232221234432 1 11112111111 66655 45566
Q ss_pred HHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhH
Q 016110 236 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIA 314 (395)
Q Consensus 236 a~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a 314 (395)
++-.+-. -++| ++|| || =|++-.=.=-++.--+.|+--.--.----|.||||- ||||||+ |||.+
T Consensus 224 t~F~~~~--~~~fD~vva--MY----HDQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAf-----DIAGkg~-A~~~s 289 (298)
T PF04166_consen 224 TVFGKAN--RGKFDAVVA--MY----HDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAF-----DIAGKGI-ADPSS 289 (298)
T ss_dssp HHTSHHH--HTT-SEEEE--SS----HHHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-C-----CGTTTTT-S-THH
T ss_pred Hhhhcch--hccCCEEEE--ee----cccCccceeecccccceEEecCCCeeeecCCCCchh-----hhhCCCC-CChHH
Confidence 6654433 3566 5555 23 355443333344444555432110123458999999 9999999 99999
Q ss_pred HHHHHHH
Q 016110 315 SIFAWSR 321 (395)
Q Consensus 315 ~IlS~am 321 (395)
|+-|.-+
T Consensus 290 ~~~Ai~~ 296 (298)
T PF04166_consen 290 MIEAIKL 296 (298)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988554
No 35
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=92.60 E-value=0.088 Score=53.10 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=76.6
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCCccccccHHH-HHHHHHHHHhhccC--ccccCCeEEc-eeeHHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQKK--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKS--KFEAAGIWYE-HRLIDD 236 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r~--~-~V-t~v~KaNvl~~t~glf-~~~~~eva~~~yp~--~~~~~~I~~~-~~~VDa 236 (395)
..+|.+.+.+.++.+.+.-++-+ + |+ .+.-..+.- -.|+| +|..+.+. |. +..+.+++++ ..--|+
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~----PAi~~~~~~G~~v~GP~paDt 249 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAG--ENGLFGDEEIRIVT----PAIEAMRAKGMDVYGPCPPDT 249 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHH----HHHHHHHHCCCcccCCCCchh
Confidence 45788888888887777555333 2 33 333333333 35666 44433331 10 0011134433 445555
Q ss_pred HHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcc-eEEecccCcccccccccccCCCcccChhH
Q 016110 237 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGETSTNSIA 314 (395)
Q Consensus 237 ~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~-a~FEp~HGSAP~~~~~dIAGk~i~ANP~a 314 (395)
+..+-.+ ++| ++||. | =|++-.=.=.+++-.+.|+--. .+ ----|-||||- ||||||+ |||.+
T Consensus 250 ~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlG-LP~iRTS~DHGTAf-----DIAGkG~-A~~~S 314 (326)
T PRK03371 250 VFLQAYE--GQYDMVVAM--Y----HDQGHIPLKLLGFYDGVNITAG-LPFIRTSADHGTAF-----DIAWTGK-AKSES 314 (326)
T ss_pred hcccccc--cCCCEEEEc--c----ccccchhheecccccceEEecC-CCeeEecCCCCchh-----hhhcCCc-CCHHH
Confidence 5443332 457 55552 3 2454444445566666665422 11 12347899999 9999999 99999
Q ss_pred HHHHHHHHH
Q 016110 315 SIFAWSRGL 323 (395)
Q Consensus 315 ~IlS~ammL 323 (395)
|+-|.-+..
T Consensus 315 ~~~Ai~lA~ 323 (326)
T PRK03371 315 MAVSIKLAM 323 (326)
T ss_pred HHHHHHHHH
Confidence 998865543
No 36
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=92.58 E-value=0.087 Score=53.29 Aligned_cols=140 Identities=15% Similarity=0.062 Sum_probs=76.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCCccccccHHH-HHHHHHHHHhhccC--ccccCCeEEc-eeeHHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQKK--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKS--KFEAAGIWYE-HRLIDD 236 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r~--~-~V-t~v~KaNvl~~t~glf-~~~~~eva~~~yp~--~~~~~~I~~~-~~~VDa 236 (395)
..+|.+.+.+.++.+.+.-++.+ + |+ .+.-..+.- -.|+| +|..+.+. |. +..+.++.++ ..--|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~----PAI~~~~~~G~~v~GP~paDt 250 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAG--EGGHFGREEIDIII----PALEELRAEGINLVGPLPADT 250 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCC--CCCCCCHHHHHHHH----HHHHHHHhCCCCcCCCCCchh
Confidence 55789988888888877655333 2 33 222222222 24555 33322221 10 0011134333 445566
Q ss_pred HHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcce-EEecccCcccccccccccCCCcccChhH
Q 016110 237 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSIA 314 (395)
Q Consensus 237 ~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a-~FEp~HGSAP~~~~~dIAGk~i~ANP~a 314 (395)
+..+-.+ +.| ++||. | =|++-.=.=-+++-.+.|+--. .+. ---|-||||- ||||||+ |||.+
T Consensus 251 ~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlG-LPiiRTS~DHGTAf-----DIAGkg~-A~~~S 315 (332)
T PRK00232 251 LFQPAYL--GDADAVLAM--Y----HDQGLPVLKYLGFGRGVNITLG-LPFIRTSVDHGTAL-----DLAGKGI-ADVGS 315 (332)
T ss_pred hcccccc--CCCCEEEEC--c----ccccchhheecccCcceEEecC-CCeeEeCCCCcchh-----hhhcCCC-CCHHH
Confidence 5544333 457 55552 3 2444433444555566665422 111 2347899999 9999999 99999
Q ss_pred HHHHHHHHHHH
Q 016110 315 SIFAWSRGLAH 325 (395)
Q Consensus 315 ~IlS~ammL~~ 325 (395)
++-|.-+..+.
T Consensus 316 ~~~Ai~lA~~~ 326 (332)
T PRK00232 316 FITALNLAIRM 326 (332)
T ss_pred HHHHHHHHHHH
Confidence 99987665544
No 37
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=92.48 E-value=3 Score=44.31 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=109.6
Q ss_pred eeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEcee-eHHHHHHH--HH
Q 016110 166 YNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMVAY--AL 242 (395)
Q Consensus 166 ~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~-~VDa~a~~--lv 242 (395)
.....-++-+++.|.++||..+-.+..--..+-- .+.-...-++..- +++- . .|+.+.-+ .+.+|-.. .+
T Consensus 462 q~kdapi~dWVkLaV~RarlS~~pavFWLDp~Ra--hd~~li~kV~~yL-kdhd--t--~GldI~Ilsp~ea~~~sl~rl 534 (744)
T COG2838 462 QVKDAPIRDWVKLAVTRARLSGMPAVFWLDPYRA--HDKELIKKVEAYL-KDHD--T--NGLDIQILSPVEAMRYSLERL 534 (744)
T ss_pred hcccchHHHHHHHHHHHHhhcCCceEEEeCcCcc--chHHHHHHHHHHh-hhcC--C--CCcceEEecHHHHHHHHHHHH
Confidence 3355668889999999999988764443323221 2333333333222 2221 1 13444333 34444332 33
Q ss_pred hCCCccEEEccCccccccchhhhhhcCC-----cccccccccCCCCcceEEec-ccCcccccccccc-cCCCcccChhHH
Q 016110 243 KSEGGYVWACKNYDGDVQSDFLAQGFGS-----LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGETSTNSIAS 315 (395)
Q Consensus 243 ~~P~~FViv~~NlfGDILSDl~a~l~Gg-----lGlapSanig~~~~~a~FEp-~HGSAP~~~~~dI-AGk~i~ANP~a~ 315 (395)
++-..-+-||.|..-|+|+||..-|-=| |.+.|=-| .+ +|||. +.||||++..+=. -+.=. =+..|-
T Consensus 535 ~~G~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlma---GG--gmfETGAGGSAPKhVqQ~~eENhLR-WDSLGE 608 (744)
T COG2838 535 RRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GG--GMFETGAGGSAPKHVQQLVEENHLR-WDSLGE 608 (744)
T ss_pred HcCCceeEecchHHHHHHhhhhhHhhcccccchheeeeecc---CC--ceeecCCCCCCcHHHHHHHHhcccc-hhhHHH
Confidence 3444447799999999999998765311 11222221 22 79999 6789998763311 12222 578899
Q ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC
Q 016110 316 IFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 353 (395)
Q Consensus 316 IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G 353 (395)
+|+.+.-|+|+|.-.+|+..+-.|+.|..|..+.|...
T Consensus 609 FLALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~ 646 (744)
T COG2838 609 FLALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNN 646 (744)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988888788888999999999988653
No 38
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=92.34 E-value=0.097 Score=52.96 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=79.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCCccccccHHH-HHHHHHHHHhhccC--ccccCCeEEc-eeeHHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQKK--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKS--KFEAAGIWYE-HRLIDD 236 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r~--~-~V-t~v~KaNvl~~t~glf-~~~~~eva~~~yp~--~~~~~~I~~~-~~~VDa 236 (395)
..+|.+.+.+.++.+.+.-+.-+ + |+ .+.-..+.- -.|+| +|..+.+. |. +..+.++.++ ..--|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~----PAI~~~~~~g~~v~GP~paDt 250 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSG--EHGLFGDEEVDEII----PAVEAAQEMGINVEGPVPADS 250 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHH----HHHHHHHHCCCcccCCCCchh
Confidence 55789999988888888666433 2 33 333333333 24555 33322221 10 0011144433 455566
Q ss_pred HHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHH
Q 016110 237 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIAS 315 (395)
Q Consensus 237 ~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~ 315 (395)
+-.+-.+ +.| ++||. | =|++-.=.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.++
T Consensus 251 ~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-----DIAGkg~-A~~~S~ 316 (332)
T PRK03743 251 VFHLALQ--GRYDAVLSL--Y----HDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAF-----DIAGTGK-ASSVSM 316 (332)
T ss_pred hcccccc--cCCCEEEEc--c----cccCChhheecccCCceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHHH
Confidence 5544433 457 55552 3 345444444556666666542210112347899999 9999999 999999
Q ss_pred HHHHHHHHHH
Q 016110 316 IFAWSRGLAH 325 (395)
Q Consensus 316 IlS~ammL~~ 325 (395)
+-|.-+..+.
T Consensus 317 ~~Ai~lA~~~ 326 (332)
T PRK03743 317 EEAILLAAKY 326 (332)
T ss_pred HHHHHHHHHH
Confidence 9997766554
No 39
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=92.21 E-value=0.098 Score=52.53 Aligned_cols=58 Identities=21% Similarity=0.064 Sum_probs=37.7
Q ss_pred hhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH
Q 016110 262 DFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH 325 (395)
Q Consensus 262 Dl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~ 325 (395)
|++-.-.==+|+--|.|+.-.--.----|-||||- ||||||| |||.+++-|..+.-+.
T Consensus 268 DQgliplK~l~Fd~~VNvtlGLPfiRTS~DHGTAf-----DiAgkGi-A~~~S~~~Ai~lA~~l 325 (332)
T COG1995 268 DQGLIPLKYLGFDRGVNVTLGLPFIRTSVDHGTAF-----DIAGKGI-ADPGSLIAAIKLAAKL 325 (332)
T ss_pred cccchhhhhhccccceEEecCCCeeeecCCccchh-----hhhcCCc-CCchHHHHHHHHHHHH
Confidence 44433344456666777653310112347899999 9999999 9999998886654443
No 40
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=92.20 E-value=0.1 Score=52.68 Aligned_cols=140 Identities=11% Similarity=-0.023 Sum_probs=80.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CE-EEEeCCCccccccHHH-HHHHHHHHHhhccC--ccccCCeEEc-eeeHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQK-K--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKS--KFEAAGIWYE-HRLID 235 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r-~--~-~V-t~v~KaNvl~~t~glf-~~~~~eva~~~yp~--~~~~~~I~~~-~~~VD 235 (395)
..+|.+.+.+.++...+.-++. + + |+ .+.-..+.- -.|+| +|..+.+. |. +..+.++.+. ..--|
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~----PAi~~~~~~Gi~v~GP~paD 245 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAG--ENGYLGREEIDVIE----PALARARAAGIDARGPYPAD 245 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHH----HHHHHHHHCCCCccCCCCch
Confidence 5679999999999888866632 3 2 33 333333333 35666 44333221 10 0011144432 45566
Q ss_pred HHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcc-eEEecccCcccccccccccCCCcccChh
Q 016110 236 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGETSTNSI 313 (395)
Q Consensus 236 a~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~-a~FEp~HGSAP~~~~~dIAGk~i~ANP~ 313 (395)
++..+..+ +.| ++||. | =|++-.-.=.+++-.+.|+--. .+ ----|-||||- ||||||+ |||.
T Consensus 246 t~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlG-LP~iRTSvDHGTAf-----DIAGkg~-A~~~ 310 (329)
T PRK01909 246 TLFQPRYL--EDADCVLAM--F----HDQGLPVLKYATFGEGINVTLG-LPIIRTSVDHGTAL-----DLAGTGR-ADPG 310 (329)
T ss_pred hhcccccc--cCCCEEEEc--c----ccccchhheecccCcceEEecC-CCeeEeCCCCcchh-----hhhcCCC-CCHH
Confidence 66544443 457 55552 3 3455444555666666775422 11 12347899999 9999999 9999
Q ss_pred HHHHHHHHHHHH
Q 016110 314 ASIFAWSRGLAH 325 (395)
Q Consensus 314 a~IlS~ammL~~ 325 (395)
+|+-|.-+..+.
T Consensus 311 S~~~Ai~lA~~~ 322 (329)
T PRK01909 311 SMIAAIDTAVTM 322 (329)
T ss_pred HHHHHHHHHHHH
Confidence 999886665444
No 41
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.09 E-value=0.11 Score=52.01 Aligned_cols=135 Identities=11% Similarity=-0.004 Sum_probs=74.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHH-HHH------HHHHHHhhccCccccCCeEEc--eeeHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRF-KDI------FQEVYEANWKSKFEAAGIWYE--HRLID 235 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf-~~~------~~eva~~~yp~~~~~~~I~~~--~~~VD 235 (395)
..+|.+.+.+-++...+.-+ ..|=..+.-..+.- -.|+| +|. .++. ++. .++.+. ..--|
T Consensus 157 ~~it~~~i~~~i~~~~~~l~-~PrIaV~gLNPHAG--E~G~~G~EE~iI~PAi~~~-~~~-------~g~~~~~GP~paD 225 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK-FKKIGVLGLNPHAG--DNGVIGGEEEEIKKAIKKA-NQF-------LGFEIFFGPLVPD 225 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc-CCCEEEEeeCCCCC--CCCCCCcchHHHHHHHHHH-HHh-------cCCCcccCCcCch
Confidence 45788888887777666433 32222333333332 23444 222 2222 101 145544 66667
Q ss_pred HHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcc-eEEecccCcccccccccccCCC-cccCh
Q 016110 236 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGE-TSTNS 312 (395)
Q Consensus 236 a~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~-a~FEp~HGSAP~~~~~dIAGk~-i~ANP 312 (395)
++..+-.+ +.| ++||. | =|++-.=.=.+++--+.|+--. .+ ----|.||||- |||||| + |||
T Consensus 226 t~F~~~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVnvTlG-LP~iRTSpDHGTAf-----DIAGkg~~-A~~ 290 (307)
T PRK03946 226 SAFTPNKR--KKFNYYVAM--Y----HDQGLAPLKALYFDESINVSLN-LPILRTSVDHGTAF-----DIAYKNAK-ANT 290 (307)
T ss_pred hhcccccc--cCCCEEEEC--c----cccCchhheeeccCcceEEecC-CCEeEecCCCCchh-----hhcCCCCc-CCH
Confidence 76544332 567 66653 3 2444333444555556664321 11 12347899999 999999 9 999
Q ss_pred hHHHHHHHHHHHH
Q 016110 313 IASIFAWSRGLAH 325 (395)
Q Consensus 313 ~a~IlS~ammL~~ 325 (395)
.+|+-|.-+..+.
T Consensus 291 ~S~~~Ai~lA~~~ 303 (307)
T PRK03946 291 KSYLNAIKYAINL 303 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 9999886655443
No 42
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.04 E-value=0.11 Score=52.62 Aligned_cols=142 Identities=18% Similarity=0.087 Sum_probs=76.9
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CE-EEEeCCCccccccHHH-HHHHHHHHHhhccCccccCCeEEc-eeeHHHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQK-K--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKSKFEAAGIWYE-HRLIDDM 237 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r-~--~-~V-t~v~KaNvl~~t~glf-~~~~~eva~~~yp~~~~~~~I~~~-~~~VDa~ 237 (395)
..+|.+.+.+.++.+.+.-++. + + |+ .+.-..+.- -.|+| +|..+.+. ---- +..+.++.+. ..--|.+
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~-PAI~-~~~~~Gi~v~GP~paDt~ 256 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAG--EGGALGREDIDIIA-PAIE-QLRAEGIDARGPLPADTM 256 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHH-HHHH-HHHHCCCCccCCCCchhh
Confidence 5578999999888888866632 3 2 33 333333332 24555 43333221 0000 0001134322 4445555
Q ss_pred HHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcce-EEecccCcccccccccccCCCcccChhHH
Q 016110 238 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSIAS 315 (395)
Q Consensus 238 a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a-~FEp~HGSAP~~~~~dIAGk~i~ANP~a~ 315 (395)
-.+-.+ +.| ++|| || =|++-.-.=.+|+-.+.|+--. .+. ---|-||||- ||||||+ |||.++
T Consensus 257 F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlG-LP~iRTSvDHGTAf-----DIAGkg~-A~~~S~ 321 (336)
T PRK05312 257 FHAAAR--ATYDAAIC--MY----HDQALIPIKTLDFDGGVNVTLG-LPFIRTSPDHGTAF-----DIAGKGI-ARPDSL 321 (336)
T ss_pred cccccc--cCCCEEEE--cc----cccCChhheecccCcceEEecC-CCeeEeCCCCcchh-----hhhcCCC-CCHHHH
Confidence 443322 456 5555 23 2454444444555566665422 111 2347899999 9999999 999999
Q ss_pred HHHHHHHHHH
Q 016110 316 IFAWSRGLAH 325 (395)
Q Consensus 316 IlS~ammL~~ 325 (395)
+-|.-+..+.
T Consensus 322 ~~Ai~lA~~~ 331 (336)
T PRK05312 322 IAALRLAAQM 331 (336)
T ss_pred HHHHHHHHHH
Confidence 9987665544
No 43
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=91.95 E-value=0.11 Score=52.64 Aligned_cols=140 Identities=10% Similarity=-0.067 Sum_probs=78.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHh-CC--C-CE-EEEeCCCccccccHHH-HHHHHHH------HHhhccCccccCCeEEc-e
Q 016110 165 MYNTDESIRAFAEASMNTAYQ-KK--W-PL-YLSTKNTILKKYDGRF-KDIFQEV------YEANWKSKFEAAGIWYE-H 231 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~-r~--~-~V-t~v~KaNvl~~t~glf-~~~~~ev------a~~~yp~~~~~~~I~~~-~ 231 (395)
..+|.+.+.+-++.+.+.-++ -+ + || .+.-..+.- -.|+| +|..+.+ +.++-+ ++.+. .
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAIe~~r~~g~------g~~v~GP 250 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAG--EQGQLGTEEKDWLIPWLESWRQKNP------DIQLLGP 250 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHHHhcCC------CceeeCC
Confidence 456888888877777665543 22 2 33 233233332 24554 3332221 112211 34443 5
Q ss_pred eeHHHHHHHHHhC------CCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcc-eEEecccCcccccccccc
Q 016110 232 RLIDDMVAYALKS------EGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQ 303 (395)
Q Consensus 232 ~~VDa~a~~lv~~------P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~-a~FEp~HGSAP~~~~~dI 303 (395)
.--|.+..+-.+. .+.| ++||. | =|++-.=.=-+++-.+.|+--. .+ ----|-||||- ||
T Consensus 251 ~paDt~F~~~~~~~~~~~~~~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlG-LP~iRTS~DHGTAf-----DI 318 (345)
T PRK02746 251 IPPDTCWVSPAQAWYGKGVAEAPDGYLAL--Y----HDQGLIPVKLMAFDRAVNTTIG-LPFIRTSPDHGTAF-----DI 318 (345)
T ss_pred CCchhhccccccccccccccCCCCEEEEC--c----ccCCChhheeeccCcceEEecC-CCeeEeCCCCcchh-----hh
Confidence 5667776555442 2467 66663 3 2454444445566666775422 11 12347899999 99
Q ss_pred cCCCcccChhHHHHHHHHHHHH
Q 016110 304 KGGETSTNSIASIFAWSRGLAH 325 (395)
Q Consensus 304 AGk~i~ANP~a~IlS~ammL~~ 325 (395)
||||+ |||.+|+-|.-+..+.
T Consensus 319 AGkg~-A~~~S~~~Ai~lA~~l 339 (345)
T PRK02746 319 AGKGI-ARPQSMKAAIKLAWEL 339 (345)
T ss_pred hcCCC-CCHHHHHHHHHHHHHH
Confidence 99999 9999999986665444
No 44
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=91.78 E-value=0.12 Score=51.94 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=75.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CE-EEEeCCCccccccHHH-HHHHHHHHHhhccC--ccccCCeEEc-eeeHH
Q 016110 165 MYNTDESIRAFAEASMNTAYQK-K--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKS--KFEAAGIWYE-HRLID 235 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r-~--~-~V-t~v~KaNvl~~t~glf-~~~~~eva~~~yp~--~~~~~~I~~~-~~~VD 235 (395)
..+|.+.+.+-++.+.+.-++. + + |+ .+.-..+.- -.|+| +|..+.+. |. +..+.++.++ ..--|
T Consensus 169 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~----PAI~~~~~~G~~v~GP~paD 242 (320)
T TIGR00557 169 AALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAG--EGGHLGREEIDIII----PALEALRAEGIDLIGPLPAD 242 (320)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCC--CCCCCcHHHHHHHH----HHHHHHHHCCCcccCCCCch
Confidence 4578999998888888766633 3 2 33 333333332 24555 33322221 10 0001134333 44455
Q ss_pred HHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcce-EEecccCcccccccccccCCCcccChh
Q 016110 236 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSI 313 (395)
Q Consensus 236 a~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a-~FEp~HGSAP~~~~~dIAGk~i~ANP~ 313 (395)
++-.+-.+ ++| ++||. | =|++-.=.=.+++-.+.|+--. .+. ---|-||||- ||||||+ |||.
T Consensus 243 t~F~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlG-LPiiRTS~DHGTAf-----DIAGkg~-A~~~ 307 (320)
T TIGR00557 243 TLFHPAAL--AKYDAVLAM--Y----HDQGLIPLKYLGFDEGVNVTLG-LPFIRTSPDHGTAF-----DIAGKGK-ADPG 307 (320)
T ss_pred hhcccccc--cCCCEEEEC--c----ccccchhheecccCcceEEecC-CCeeEeCCCCcchh-----hhhcCCC-CCHH
Confidence 55443322 457 55552 3 2454444444555566665422 111 2347899999 9999999 9999
Q ss_pred HHHHHHHHHH
Q 016110 314 ASIFAWSRGL 323 (395)
Q Consensus 314 a~IlS~ammL 323 (395)
+++-|.-+..
T Consensus 308 S~~~Ai~~A~ 317 (320)
T TIGR00557 308 SLIAAIKLAI 317 (320)
T ss_pred HHHHHHHHHH
Confidence 9988865543
No 45
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=87.68 E-value=0.29 Score=50.85 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=19.3
Q ss_pred CCCEEEEeccC-CCccccccce
Q 016110 108 TKPICIGRHAF-GDQYRATDTV 128 (395)
Q Consensus 108 ~~divivREnt-eg~Y~g~~~~ 128 (395)
++|++|+|||| ||+|+|.++.
T Consensus 140 ~iD~vivREnt~Eg~Y~g~e~~ 161 (409)
T TIGR00127 140 ATDFVVPGPGKLELVYKPKDGT 161 (409)
T ss_pred ceEEEEecCCeeeEEEECCCCC
Confidence 79999999999 9999999863
No 46
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=84.27 E-value=0.49 Score=49.17 Aligned_cols=6 Identities=0% Similarity=-0.147 Sum_probs=2.3
Q ss_pred HHHHHH
Q 016110 341 KLEAAC 346 (395)
Q Consensus 341 ~i~~Av 346 (395)
+|++.+
T Consensus 364 Av~~~l 369 (410)
T PLN00103 364 ACVGTV 369 (410)
T ss_pred HHHHHH
Confidence 333333
No 47
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=41.21 E-value=42 Score=35.07 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=36.1
Q ss_pred cccchhhhhhcCCcccccccccCCCCcceEEec-ccCcccccccccccCCCcccChhHHHHHHHHHHHHhc
Q 016110 258 DVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRA 327 (395)
Q Consensus 258 DILSDl~a~l~GglGlapSanig~~~~~a~FEp-~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg 327 (395)
||++ ++=+|.|| +-=||-+........|+| .|||.- | -||.||--+ .-.|+.+-
T Consensus 247 DI~t-laK~LgGG--~PigA~la~~~~~~~~~~G~HgSTf--------G----GNpLacAv~-~a~l~~l~ 301 (404)
T COG4992 247 DILT-LAKALGGG--FPIGAMLATEEIASAFTPGDHGSTF--------G----GNPLACAVA-LAVLEVLL 301 (404)
T ss_pred CEEE-eeccccCC--ccceeeEEchhhhhcCCCCcccCCC--------C----cCHHHHHHH-HHHHHHHc
Confidence 7776 77888888 444666664321245888 899977 4 699999544 34566654
No 48
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=38.74 E-value=12 Score=39.17 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=17.2
Q ss_pred CCCEEEEeccC-CCccccc
Q 016110 108 TKPICIGRHAF-GDQYRAT 125 (395)
Q Consensus 108 ~~divivREnt-eg~Y~g~ 125 (395)
++|++|+|||| ||+|.+.
T Consensus 143 ~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 143 ATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred ceEEEEecCCEEEEEEecC
Confidence 79999999999 9999998
No 49
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=34.91 E-value=22 Score=33.68 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=26.8
Q ss_pred cccccccccCCCCcceEEecccCcccccccccccCCCcccCh
Q 016110 271 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNS 312 (395)
Q Consensus 271 lGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP 312 (395)
||..|-+|-|+.+ ..|-|.|||-= |+.|+=. --|
T Consensus 156 LGCVp~~~AGd~g--g~~CPCHGSHY-----dasGRIr-kGP 189 (210)
T KOG1671|consen 156 LGCVPIANAGDYG--GYYCPCHGSHY-----DASGRIR-KGP 189 (210)
T ss_pred ccccccccccccC--ceecccccccc-----cccCcee-cCC
Confidence 6888999999886 68999999976 7877644 444
No 50
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=32.02 E-value=69 Score=32.36 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHH
Q 016110 177 EASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDD 236 (395)
Q Consensus 177 r~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa 236 (395)
.||+|+|+ ||.+|.++- | +-.-...+.+|+. +.|+ +++....+|-
T Consensus 64 ayA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI~-~~~~-------vev~~i~~Df 108 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS-----R-TQEKLEAVAKEIE-EKYK-------VEVRIIAIDF 108 (312)
T ss_pred HHHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHHH-HHhC-------cEEEEEEEec
Confidence 36899997 788888874 3 6667788899995 6776 6666665554
No 51
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=31.30 E-value=55 Score=26.27 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q 016110 169 DESIRAFAEASMNTAYQKKWPLYLST 194 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~~~Vt~v~ 194 (395)
.+.+++.+++|+++|...+.+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 45677999999999999887766654
No 52
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=29.81 E-value=2e+02 Score=32.67 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCC--CEEEE---eCCCccccccHHHHHHHHHHHHhhccCccccCCeEEc-eeeHHHHHHHH
Q 016110 168 TDESIRAFAEASMNTAYQKKW--PLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAYA 241 (395)
Q Consensus 168 Tr~~~eRiar~AFe~A~~r~~--~Vt~v---~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~-~~~VDa~a~~l 241 (395)
|.+.--.|+..|-++|+.-+. ||-+. ++-|.--.+.-.-++..+-+ ++.+| ++.++ ++.+|++.-.-
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~ll-k~~~~------~l~~dGemq~D~Al~~~ 674 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELL-RERAP------DLEVDGEMHGDAALNEE 674 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHH-HhhCC------CcEEEEechHHHhCCHH
Confidence 566677888888999987664 67777 55443322333455565544 56678 77776 56677774222
Q ss_pred H---hCCCc-c-----EEEccCcc-ccccchhhhhhcCCc
Q 016110 242 L---KSEGG-Y-----VWACKNYD-GDVQSDFLAQGFGSL 271 (395)
Q Consensus 242 v---~~P~~-F-----Viv~~Nlf-GDILSDl~a~l~Ggl 271 (395)
+ +-|.. . |+|.||+. |+|+.-+.-.+.|+.
T Consensus 675 va~~K~p~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 675 IRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred HHHhhCCCCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 2 23322 2 99999996 899888887776653
No 53
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=25.68 E-value=1.6e+02 Score=23.16 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcc
Q 016110 171 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 219 (395)
Q Consensus 171 ~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp 219 (395)
-...+++.|+++|++++.||.. ++..-...+++= .+|.
T Consensus 39 ia~~L~~~~l~~a~~~~~kv~p---------~C~y~~~~~~~h--pey~ 76 (78)
T PF14542_consen 39 IAKKLVEAALDYARENGLKVVP---------TCSYVAKYFRRH--PEYQ 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEE---------TSHHHHHHHHH---GGGT
T ss_pred HHHHHHHHHHHHHHHCCCEEEE---------ECHHHHHHHHhC--cccc
Confidence 3568999999999999988765 577666666542 3454
No 54
>PRK12861 malic enzyme; Reviewed
Probab=25.06 E-value=3.1e+02 Score=31.21 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCC--CEEEEeCCCc---cccccHHHHHHHHHHHHhhccCccccCCeEEc-eeeHHHHHHHH
Q 016110 168 TDESIRAFAEASMNTAYQKKW--PLYLSTKNTI---LKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAYA 241 (395)
Q Consensus 168 Tr~~~eRiar~AFe~A~~r~~--~Vt~v~KaNv---l~~t~glf~~~~~eva~~~yp~~~~~~~I~~~-~~~VDa~a~~l 241 (395)
|-+....|+..|.++|+.-|. ||-+..=+|. --.+....++..+-+ +.++| ++.++ ++..|++.-.-
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~-~~~~p------d~~vdGemq~DaAl~~e 683 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIV-REQAP------DLEADGEMHGDCALDEG 683 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHH-HhhCC------CcEEEecCcHHHhCCHH
Confidence 556666778888888887764 5666543333 211234577777644 56788 66666 56678664222
Q ss_pred H---hCCCc-c-----EEEccCc-cccccchhhhhhcCC
Q 016110 242 L---KSEGG-Y-----VWACKNY-DGDVQSDFLAQGFGS 270 (395)
Q Consensus 242 v---~~P~~-F-----Viv~~Nl-fGDILSDl~a~l~Gg 270 (395)
+ +-|.. + |+|+||+ =|+|+-.+.-.+.|+
T Consensus 684 ~a~~K~p~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 684 LRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred HHHhcCCCCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 2 23332 2 9999999 899999888777653
No 55
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=25.00 E-value=90 Score=25.48 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q 016110 170 ESIRAFAEASMNTAYQKKWPLYLSTK 195 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~~~Vt~v~K 195 (395)
+.+++++++|+.+|++.+-+|+++|=
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v 35 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNV 35 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 46889999999999987777777664
No 56
>PRK15005 universal stress protein F; Provisional
Probab=24.49 E-value=1e+02 Score=25.95 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q 016110 172 IRAFAEASMNTAYQKKWPLYLST 194 (395)
Q Consensus 172 ~eRiar~AFe~A~~r~~~Vt~v~ 194 (395)
+++.+++|+++|++.+-+|+++|
T Consensus 17 ~~~a~~~a~~la~~~~~~l~ll~ 39 (144)
T PRK15005 17 TQRVISHVEAEAKIDDAEVHFLT 39 (144)
T ss_pred HHHHHHHHHHHHhccCCeEEEEE
Confidence 57899999999998877776654
No 57
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.29 E-value=45 Score=34.57 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc----
Q 016110 173 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY---- 248 (395)
Q Consensus 173 eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F---- 248 (395)
-|++|-.|++|+.+.=.+..+ +....++.+.|- .=.--+.-|....++|+..=.+|
T Consensus 230 aRlVRelF~lArekaPsIIFi--------------DEIDAIg~kR~d------~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 230 ARLVRELFELAREKAPSIIFI--------------DEIDAIGAKRFD------SGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEEE--------------echhhhhccccc------CCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 489999999998864334333 344666666664 23335667788899999988888
Q ss_pred ---EEEccCccccccc
Q 016110 249 ---VWACKNYDGDVQS 261 (395)
Q Consensus 249 ---Viv~~NlfGDILS 261 (395)
||.++|-. |||-
T Consensus 290 nvKVI~ATNR~-D~LD 304 (406)
T COG1222 290 NVKVIMATNRP-DILD 304 (406)
T ss_pred CeEEEEecCCc-cccC
Confidence 99999997 5553
No 58
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=22.17 E-value=3.2e+02 Score=30.28 Aligned_cols=114 Identities=18% Similarity=0.325 Sum_probs=68.3
Q ss_pred CCcccccccee-cCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Q 016110 119 GDQYRATDTVI-QGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKN 196 (395)
Q Consensus 119 eg~Y~g~~~~~-~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~Ka 196 (395)
+++|..+.-.. ...+++.+.|...+|... .+ .....-..+-.++ .+.+.+....+.+..++-|++.+--..+=-|+
T Consensus 179 gDFy~~EkSvt~~~a~~~~Ie~~~~~G~~~-vL-K~~~~l~~gEviDat~ms~~aL~~F~~~~i~~Ak~~gvLfSlHlKA 256 (741)
T TIGR00178 179 GDFYGSEKSATIDAAGSVKIELIAKDGSST-VL-KAKLPLLDGEIIDSSVMSKKALRNFIEEEIEDAKEEGVLLSLHLKA 256 (741)
T ss_pred CCCcCCceeEEecCCCeEEEEEEcCCCCEE-Ee-cCCCccCCCCEeehhhhCHHHHHHHHHHHHHHHHHcCcEEEeeehh
Confidence 45555543332 235577777876666411 11 0001111334455 78899999999999999998877555556699
Q ss_pred CccccccHH-H----HHHHHHHHHhhccCccccCCeEEceeeHH
Q 016110 197 TILKKYDGR-F----KDIFQEVYEANWKSKFEAAGIWYEHRLID 235 (395)
Q Consensus 197 Nvl~~t~gl-f----~~~~~eva~~~yp~~~~~~~I~~~~~~VD 235 (395)
+-||.+|.. | +--|.+|. ..|.++|.+.||..+.-+-|
T Consensus 257 TMMKVSDPIiFGhaV~vffkdvF-~k~~~~~~~~Gvn~nnGlgd 299 (741)
T TIGR00178 257 TMMKVSDPIMFGHAVREFYKDAF-AKHAEVLKQLGVDVNNGIGD 299 (741)
T ss_pred eeecccCceehhHHHHHHHHHHH-HHHHHHHHHcCCCcCcchHH
Confidence 999998863 1 12234444 34556666777766654444
No 59
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=21.30 E-value=3.4e+02 Score=27.18 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHHHhCC-C--CEEEE---eCCCccccccHHHHHHHHHHHHhhccCccccCCeEEc-eeeHHHHHHH
Q 016110 168 TDESIRAFAEASMNTAYQKK-W--PLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAY 240 (395)
Q Consensus 168 Tr~~~eRiar~AFe~A~~r~-~--~Vt~v---~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~-~~~VDa~a~~ 240 (395)
|.+..-.|+..|-++|+.-+ . ||-+. +|.|---.+.-..++.+.-+ ++++| ++.++ ++-+|++.-.
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~-~~~~~------~~~vdG~l~~D~Al~~ 229 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIA-KEKRP------DLTIDGELQFDAAFVE 229 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHH-hccCC------CeEEEecCchhhhCCH
Confidence 56667778899999998776 2 55444 33332222233456666544 56788 66666 4556776422
Q ss_pred H---HhCCCc-c-----EEEccCcc-ccccchhhhhhcCC
Q 016110 241 A---LKSEGG-Y-----VWACKNYD-GDVQSDFLAQGFGS 270 (395)
Q Consensus 241 l---v~~P~~-F-----Viv~~Nlf-GDILSDl~a~l~Gg 270 (395)
= .+-|.. + |+|+||++ |+|+--+.-.+.|+
T Consensus 230 ~~a~~K~~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 230 KVAEKKAPNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred HHHHhhCCCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 1 233433 2 99999998 77777666655443
No 60
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=21.27 E-value=2.2e+02 Score=27.52 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=43.9
Q ss_pred HHHHHhCCC--CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHH-HHHHhCCCcc
Q 016110 180 MNTAYQKKW--PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMV-AYALKSEGGY 248 (395)
Q Consensus 180 Fe~A~~r~~--~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a-~~lv~~P~~F 248 (395)
.+||.+.++ +|..++--...+.|-.|| ++| ++.|+ .|.++.+.-|++. ..++++-..|
T Consensus 62 id~~~~~~~~~~l~~idT~~~~PeT~~l~----d~V-ekkY~------~i~I~~~~pd~~e~ea~~~~K~~~ 122 (261)
T KOG0189|consen 62 IDMLSKTGRPFRLFFIDTLHHFPETLRLF----DAV-EKKYG------NIRIHVYFPDAVEVEALFASKGGF 122 (261)
T ss_pred HHHHHHcCCCceeEEeeccccChHHHHHH----HHH-HHhcC------ceEEEEEcchhHHHHHHHHhccch
Confidence 466766655 688988888887777666 566 57899 8999999999995 5567665555
No 61
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.17 E-value=5.6e+02 Score=23.44 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEcee-------eHHHHHHHHHhCCCc
Q 016110 175 FAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-------LIDDMVAYALKSEGG 247 (395)
Q Consensus 175 iar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~-------~VDa~a~~lv~~P~~ 247 (395)
++..-+++|.+++.+|+++- -+.+.-.+.++.+ +++|| ++.+-.. .-+..+.++-...-+
T Consensus 36 l~~~l~~~~~~~~~~vfllG------~~~~v~~~~~~~l-~~~yP------~l~i~g~~g~f~~~~~~~i~~~I~~s~~d 102 (177)
T TIGR00696 36 LMEELCQRAGKEKLPIFLYG------GKPDVLQQLKVKL-IKEYP------KLKIVGAFGPLEPEERKAALAKIARSGAG 102 (177)
T ss_pred HHHHHHHHHHHcCCeEEEEC------CCHHHHHHHHHHH-HHHCC------CCEEEEECCCCChHHHHHHHHHHHHcCCC
Confidence 55666778888888888862 3556667777877 57899 7765422 223445555556666
Q ss_pred cEEEc
Q 016110 248 YVWAC 252 (395)
Q Consensus 248 FViv~ 252 (395)
+|+|+
T Consensus 103 il~Vg 107 (177)
T TIGR00696 103 IVFVG 107 (177)
T ss_pred EEEEE
Confidence 76654
No 62
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=21.16 E-value=4.8e+02 Score=24.35 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=65.2
Q ss_pred eCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEce-eeHHHHHHHHHhCC
Q 016110 167 NTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEH-RLIDDMVAYALKSE 245 (395)
Q Consensus 167 ~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~-~~VDa~a~~lv~~P 245 (395)
..-+..+|++--|.+.|.+. ..|.++|----|...+.-|++..+++...+-| =|..-| ..-|-...++-+.+
T Consensus 81 V~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp------liatlHrrsr~P~v~~ik~~~ 153 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGKP------LIATLHRRSRHPLVQRIKKLG 153 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhc-CCEEEEecccchhhccHHHHHHHHHHhcCCCc------EEEEEecccCChHHHHhhhcC
Confidence 46778999999999999876 67999999888988899999999999854444 243333 43344444444333
Q ss_pred CccEEEccCccccccchhhhhhc
Q 016110 246 GGYVWACKNYDGDVQSDFLAQGF 268 (395)
Q Consensus 246 ~~FViv~~NlfGDILSDl~a~l~ 268 (395)
.-+|++++-=-+-|+..+.+.|-
T Consensus 154 ~v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 154 GVYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred CEEEEEccchhhHHHHHHHHHhc
Confidence 33454666444467776666553
No 63
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=20.07 E-value=91 Score=26.33 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEeC
Q 016110 171 SIRAFAEASMNTAYQKKWPLYLSTK 195 (395)
Q Consensus 171 ~~eRiar~AFe~A~~r~~~Vt~v~K 195 (395)
.+++.+++|+++|+..+.+|+++|=
T Consensus 11 ~s~~al~~a~~~a~~~~~~l~ll~v 35 (146)
T cd01989 11 KSKNALKWALDNLATKGQTIVLVHV 35 (146)
T ss_pred ccHHHHHHHHHhccCCCCcEEEEEe
Confidence 5778999999999888778877763
Done!