Query 016110
Match_columns 395
No_of_seqs 123 out of 1100
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us8_A Isocitrate dehydrogenas 100.0 1E-105 4E-110 817.1 27.8 386 1-392 41-426 (427)
2 1lwd_A Isocitrate dehydrogenas 100.0 3E-105 1E-109 812.5 29.1 392 1-393 19-412 (413)
3 4aoy_A Isocitrate dehydrogenas 100.0 2E-104 7E-109 802.2 25.8 382 1-388 18-399 (402)
4 2uxq_A Isocitrate dehydrogenas 100.0 5E-104 2E-108 801.5 26.8 382 1-388 17-398 (402)
5 1zor_A Isocitrate dehydrogenas 100.0 2E-102 8E-107 788.9 28.6 379 1-391 18-399 (399)
6 2qfy_A Isocitrate dehydrogenas 100.0 8E-101 3E-105 782.7 26.5 390 1-393 33-425 (427)
7 1x0l_A Homoisocitrate dehydrog 100.0 2.6E-97 9E-102 734.5 32.5 312 5-388 16-331 (333)
8 3flk_A Tartrate dehydrogenase/ 100.0 1.3E-96 4E-101 737.1 31.3 317 17-388 36-361 (364)
9 3vmk_A 3-isopropylmalate dehyd 100.0 6.2E-97 2E-101 740.8 27.6 319 17-388 44-372 (375)
10 3udu_A 3-isopropylmalate dehyd 100.0 8.1E-97 3E-101 736.8 27.1 311 17-389 37-357 (361)
11 3u1h_A 3-isopropylmalate dehyd 100.0 2.2E-96 8E-101 738.0 28.9 316 17-389 54-378 (390)
12 3dms_A Isocitrate dehydrogenas 100.0 3E-96 1E-100 747.7 29.3 335 17-387 70-426 (427)
13 2y3z_A 3-isopropylmalate dehyd 100.0 3.5E-96 1E-100 732.3 27.8 309 17-391 34-351 (359)
14 3ty4_A Probable homoisocitrate 100.0 8.8E-96 3E-100 730.4 30.5 318 5-388 25-365 (366)
15 1cnz_A IPMDH, IMDH, protein (3 100.0 1.2E-95 4E-100 730.4 27.8 316 17-388 35-360 (363)
16 1vlc_A 3-isopropylmalate dehyd 100.0 1.5E-95 5E-100 728.8 27.8 323 7-390 29-365 (366)
17 2e0c_A 409AA long hypothetical 100.0 5.9E-95 2E-99 735.2 31.8 333 17-388 58-407 (409)
18 1wpw_A 3-isopropylmalate dehyd 100.0 5.9E-95 2E-99 718.4 30.3 310 7-387 18-335 (336)
19 1tyo_A Isocitrate dehydrogenas 100.0 5.2E-95 1.8E-99 739.4 30.0 335 17-388 69-422 (435)
20 2iv0_A Isocitrate dehydrogenas 100.0 2.6E-95 9E-100 737.8 27.6 345 5-388 42-410 (412)
21 3r8w_A 3-isopropylmalate dehyd 100.0 1.3E-95 5E-100 736.1 25.0 320 17-393 73-403 (405)
22 3blx_B Isocitrate dehydrogenas 100.0 1.9E-95 6E-100 725.9 24.9 310 5-387 36-354 (354)
23 1hqs_A Isocitrate dehydrogenas 100.0 3.8E-95 1.3E-99 738.7 26.6 351 4-387 33-422 (423)
24 3blx_A Isocitrate dehydrogenas 100.0 4.1E-95 1.4E-99 722.2 25.3 310 5-388 32-347 (349)
25 2d4v_A Isocitrate dehydrogenas 100.0 1.7E-94 5.7E-99 734.6 29.3 345 7-387 50-429 (429)
26 1a05_A IPMDH, IMDH, 3-isopropy 100.0 8E-95 2.7E-99 723.8 25.0 324 5-388 23-355 (358)
27 2d1c_A Isocitrate dehydrogenas 100.0 3.8E-94 1.3E-98 737.9 29.3 320 5-392 34-360 (496)
28 1w0d_A 3-isopropylmalate dehyd 100.0 3.7E-94 1.3E-98 713.4 27.9 317 5-387 16-337 (337)
29 1itw_A Isocitrate dehydrogenas 96.2 0.13 4.5E-06 53.7 16.5 185 159-353 453-644 (741)
30 2b0t_A NADP isocitrate dehydro 96.2 0.13 4.6E-06 53.6 16.1 184 160-353 450-640 (738)
31 1yxo_A 4-hydroxythreonine-4-ph 93.1 0.054 1.8E-06 53.3 3.6 138 165-325 173-323 (328)
32 2hi1_A 4-hydroxythreonine-4-ph 93.0 0.053 1.8E-06 53.3 3.4 136 165-324 180-328 (330)
33 4aty_A Terephthalate 1,2-CIS-d 93.0 0.051 1.7E-06 53.8 3.3 133 165-324 195-340 (349)
34 3lxy_A 4-hydroxythreonine-4-ph 92.9 0.058 2E-06 53.2 3.6 137 165-325 178-328 (334)
35 3tsn_A 4-hydroxythreonine-4-ph 91.5 0.1 3.4E-06 52.0 3.2 80 231-324 281-362 (367)
36 2qfy_A Isocitrate dehydrogenas 69.9 0.68 2.3E-05 47.0 -1.0 16 108-123 156-171 (427)
37 3s3t_A Nucleotide-binding prot 25.6 49 0.0017 26.3 3.3 26 169-194 15-40 (146)
38 3hgm_A Universal stress protei 24.4 54 0.0019 26.0 3.3 26 170-195 13-38 (147)
39 3fg9_A Protein of universal st 23.2 66 0.0022 26.1 3.7 27 169-195 27-53 (156)
40 3dlo_A Universal stress protei 21.5 73 0.0025 26.2 3.7 26 169-194 35-60 (155)
41 2z08_A Universal stress protei 21.5 67 0.0023 25.4 3.3 25 170-194 13-37 (137)
42 1itw_A Isocitrate dehydrogenas 21.2 1.1E+02 0.0039 32.2 5.5 116 118-236 178-300 (741)
43 2af4_C Phosphate acetyltransfe 20.7 3E+02 0.01 26.2 8.3 92 167-265 178-286 (333)
44 1nha_A TFIIF-alpha, transcript 20.4 1.2E+02 0.0043 23.5 4.3 44 343-390 21-65 (82)
No 1
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.1e-105 Score=817.09 Aligned_cols=386 Identities=69% Similarity=1.135 Sum_probs=345.3
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|.+.||++++++|.+++++|+|+++++|.++++++|+++|++++++|++++++||||++||.+..++|+.+.++|+|+|+
T Consensus 41 IGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~l~~~~~s~n~ 120 (427)
T 3us8_A 41 MTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVEEFKLKKMWKSPNG 120 (427)
T ss_dssp HHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCccccccccccccccCchH
Confidence 35779999999999999999999999999999999999999999999999999999999998766666677778999999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||+.||||+|+||+.++++|++.+++++|+|||||||||+|+|+++.+.++|+.++.|.+++|. +.+..+.+|.+ .+
T Consensus 121 ~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~G~-~~~~~~~~~~~-~~ 198 (427)
T 3us8_A 121 TIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDGQ-TIEHDVYDAPG-AG 198 (427)
T ss_dssp HHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTSC-EEEEEEEEESS-CE
T ss_pred HHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeeccccc-cccccccccCC-Cc
Confidence 99999999999999966899876667789999999999999999999988888878777766552 22222233333 56
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
++..+++|+++++||+|+||+||++|+++||+|||+|||+.|||+|+++|+|||+++||++|++++|++++++||+||||
T Consensus 199 va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~~I~~~~~~VD~~~mq 278 (427)
T 3us8_A 199 VALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLIDDMVAS 278 (427)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHH
T ss_pred EEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCCCeEEEEEEHHHHHHH
Confidence 77558889999999999999999999999999999999999999999999999854999888888999999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+|||||||+++||||||++|||+|+|||++
T Consensus 279 lv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iAGk~i~ANP~A~IlS~a 358 (427)
T 3us8_A 279 ALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWT 358 (427)
T ss_dssp HHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHH
T ss_pred HhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcCCCCceeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998863489999999999888888999998899999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhc
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 392 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~ 392 (395)
|||+|||+++.+..+.++|++|++||.+|+++|++|+|||+.+ ++ ..+.++|+||+|+|+++|++.|.
T Consensus 359 mmL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~-~~---~~~~~~T~e~~daV~~~l~~~l~ 426 (427)
T 3us8_A 359 RGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLI-GP---DQPWLSTTGFLDKIDENLRKAMA 426 (427)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHH-CT---TCCCBCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCccccccc-cc---CCcccCHHHHHHHHHHHHHHHhc
Confidence 9999999988777788999999999999999999999998422 10 12369999999999999998874
No 2
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=3.4e-105 Score=812.53 Aligned_cols=392 Identities=69% Similarity=1.158 Sum_probs=341.4
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|.+.||++++++|+.++++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..+++..+.++|+|+|+
T Consensus 19 iGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~~~~~~~~~~~~~s~~l 98 (413)
T 1lwd_A 19 MTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNG 98 (413)
T ss_dssp HHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHH
T ss_pred hhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcccCccccccccccCccH
Confidence 56889999999999999999999999999999999999999999999999999999999998544444334457899999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||+.||||+|+||++++++|++.+++++|+||+||||||+|+++|+.+.++|..++.|.+++|....+..++.+.. ++
T Consensus 99 ~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~-~~ 177 (413)
T 1lwd_A 99 TIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GG 177 (413)
T ss_dssp HHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTCCCCEEEEEEEESS-CE
T ss_pred HHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCCcccccccccccCC-Cc
Confidence 99999999999999987888876677789999999999999999999998888888888876553221222222211 33
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
++..+++|+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||+++||++|.+.+|+++|++||+||||
T Consensus 178 ~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~~~~~~VD~~~mq 257 (413)
T 1lwd_A 178 VGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQ 257 (413)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHH
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCCeEEEEEEEHHHHHHH
Confidence 44448899999999999999999999889999999999999999999999999756999777777799999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+|||||||++++|||||++|||+|+|||++
T Consensus 258 lv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~~aGk~~~ANP~A~IlS~a 337 (413)
T 1lwd_A 258 VLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWT 337 (413)
T ss_dssp HHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHH
T ss_pred HhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhhhcCCCCccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999873489999999999888888899995599999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCC-cCCcc-cccCHHHHHHHHHHHHHHHhcc
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGS-KMTRE-HYLNTEEFIDAVADDLRARLSG 393 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~-~~~~~-~~~sT~e~~daV~~~l~~~l~~ 393 (395)
|||+|||+.+.+..+.++|++|++||.+|+++|++|+|||..+.|. +..+. +.++|+||+|+|+++|+++|.+
T Consensus 338 mmL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~daV~~~l~~~~~~ 412 (413)
T 1lwd_A 338 RGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 412 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCccccchhHHHHHHHHHHHHHHHHcCCcCcccccccCCcccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999876666677899999999999999999999997322241 11111 3689999999999999988875
No 3
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=2.2e-104 Score=802.15 Aligned_cols=382 Identities=53% Similarity=0.900 Sum_probs=318.2
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|++.+|+.++++++.++++|+|+++++|.++++++|+++|++++++|++++|+||||++||.+.+++++.+.++|+|+|+
T Consensus 18 i~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~~~~~~~l~~~~~s~n~ 97 (402)
T 4aoy_A 18 MTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNG 97 (402)
T ss_dssp HHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHTTCSSCCCCHHH
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCccccccccccccccChHH
Confidence 67899999999999999999999999999999999999999999999999999999999998766666667778999999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||+.||||+|+||+.++++|++.+++++|||||||||||+|+|+++....++.+++.|.++.|.. ....+.+|.+ .+
T Consensus 98 ~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~g 175 (402)
T 4aoy_A 98 TIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEV-SRQTIHEFDG-PG 175 (402)
T ss_dssp HHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTSCE-EEEEEEEESS-CE
T ss_pred HHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCCcc-cccccccccC-Ce
Confidence 999999999999999668888666677899999999999999999998877787788887766542 1112223322 35
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
++..+++|+++++||+|+||+||++|+++||+|||+|||+.|||+|+++|+|||+++||++|++++|+++|++||+|+|+
T Consensus 176 v~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~~i~~~~~~vD~~~~~ 255 (402)
T 4aoy_A 176 VIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVAR 255 (402)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHH
T ss_pred eEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCCCeEEEEEEHHHHHHH
Confidence 55557889999999999999999999999999999999999999999999999855999888888999999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
||++|++|||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||||++++|||||++|||+|+|||++
T Consensus 256 lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~-~~~fEp~HGSApd~~~~~iaGk~~~aNP~A~Ils~a 334 (402)
T 4aoy_A 256 IIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDG-KYEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAWT 334 (402)
T ss_dssp HHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTC-CEEEEC-----------------CCCCCHHHHHHHH
T ss_pred HhhCCCCcEEEECCcchHHHHHHHHHhcCchhhccccccCCCC-ceEEeeccCCccccchhhccCCCcCcCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999886 589999999999999999999997799999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
|||+|+|+++.+..+.++|++|++||.+|+++|++|+|||+...| ...+.++|+||+|+|+++|+
T Consensus 335 ~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g~~T~Dlgg~~~~---~~~~~~~T~ef~~av~~~l~ 399 (402)
T 4aoy_A 335 GALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLASLSEV---PEKKIVNTEDFLKEIRKTFE 399 (402)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTEEEHHHHTTCCC---SCCEEECHHHHHHHHHHHHT
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHcCCCCccccccccc---CCCCCcCHHHHHHHHHHHHh
Confidence 999999998877778899999999999999999999999832111 11235799999999999985
No 4
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=5.2e-104 Score=801.48 Aligned_cols=382 Identities=48% Similarity=0.802 Sum_probs=332.0
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|.+.+|++++++|++++++|+|+++++|+++++++|+++|++++++|+++|++||||++||.+..+++..+.++|+|+|+
T Consensus 17 ig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~~~~~~~~~~~~s~~l 96 (402)
T 2uxq_A 17 MTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNA 96 (402)
T ss_dssp HHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCcccCccccccccccCchH
Confidence 56889999999999999999999999999999999999999999999999999999999998544445444457899999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||+.||||+|+||++++++|++.+++++|+|||||||||+|+++++.+.++|..++.+.++.|. ..+...+.+.. ++
T Consensus 97 ~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~-~~~~~~~~~~~-~~ 174 (402)
T 2uxq_A 97 TVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGK-ETRQTIMEVDE-PA 174 (402)
T ss_dssp HHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSC-EEEEEEEEESS-CE
T ss_pred HHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCc-cccccccccCC-Cc
Confidence 99999999999999988888866666789999999999999999999887667666666554442 11111111211 34
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
++..+++|+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||+++||++|.+++|+++|++||+||||
T Consensus 175 ~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~~~~~~vD~~~mq 254 (402)
T 2uxq_A 175 IVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVAR 254 (402)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTCCEEEEEHHHHHHH
T ss_pred eEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCeEEEEEEEHHHHHHH
Confidence 55557899999999999999999999889999999999999999999999999756999666666699999999999999
Q ss_pred HHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 241 ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 241 lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
||++|++|||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||||+++++|||||++|||+|+|||++
T Consensus 255 lv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~lfEpvHGSAPdi~~~~~aGk~~~ANP~A~IlS~a 333 (402)
T 2uxq_A 255 MMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWT 333 (402)
T ss_dssp HTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTS-CEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHH
T ss_pred HccCCCceEEEEcccchHHHHHHHHHhcCCccccccceecCCC-CeEEeCCCCChhhhhhhhhcCCCcccCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 489999999999887778899994499999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
|||+|||+.+.+..+.++|++|++||.+|+++|++|+|||+.+.|. +++.+||+||+|+|+++|+
T Consensus 334 mmL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlgg~~~g~---~~~~~~T~e~~daI~~~l~ 398 (402)
T 2uxq_A 334 GALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGDLARICEPA---AIKVLDSIEFIDELGKRLQ 398 (402)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTEECHHHHTTCSSC---CSEECCHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCC---CCCCcCHHHHHHHHHHHHh
Confidence 9999999877666778899999999999999999999998322221 1125899999999999995
No 5
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-102 Score=788.94 Aligned_cols=379 Identities=52% Similarity=0.882 Sum_probs=330.0
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|.+.||++++++|++++++|+|+++++|+++++++|+++|++++++|++++++||||++||.+..+++..+.++|+|+|+
T Consensus 18 iG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~~~~~~~~~~~~~s~~l 97 (399)
T 1zor_A 18 MARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNA 97 (399)
T ss_dssp HHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcccCccccccccccCchH
Confidence 57899999999999999999999999999999999999999999999999999999999997543444334457899999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcc
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (395)
+||+.||||+|+||++++++|++.+++++|+||+||||||+|++.++.+.++|+.++.|.++.+. +..+..+.. ++
T Consensus 98 ~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~~~---~~~~~~~~~-~~ 173 (399)
T 1zor_A 98 TIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENK---TLLVHKFEG-NG 173 (399)
T ss_dssp HHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSSCE---EEEEEEESS-CE
T ss_pred HHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccccc---cceeeccCC-ce
Confidence 99999999999999988899876677789999999999999999999888899888888753110 111111211 34
Q ss_pred eEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHh---hccCccccCCeEEceeeHHHH
Q 016110 161 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA---NWKSKFEAAGIWYEHRLIDDM 237 (395)
Q Consensus 161 ~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~---~yp~~~~~~~I~~~~~~VDa~ 237 (395)
++...++|+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||++ +|| +++|+++|++||+|
T Consensus 174 ~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp----~~~I~~~~~~vD~~ 249 (399)
T 1zor_A 174 VVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELE----KAGVNYRYMLIDDA 249 (399)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHH----HTTCCEEEEEHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCC----CCcEEEEEEEHHHH
Confidence 44458899999999999999999999889999999999999999999999999842 787 23599999999999
Q ss_pred HHHHHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHH
Q 016110 238 VAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIF 317 (395)
Q Consensus 238 a~~lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~Il 317 (395)
|||||++|++|||||+|||||||||++|+++|||||+||+|||+++ .+||||+|||||||++++|||||++|||+|+||
T Consensus 250 ~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~~fEpvHGSAPdi~~~~iaGk~~~ANP~A~Il 328 (399)
T 1zor_A 250 AAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGTVRRHYYRYLKGEKTSTNPTASIF 328 (399)
T ss_dssp HHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTC-CEEEEESSCCCHHHHHHHTTTCCCCCCCHHHHH
T ss_pred HHHhccCCCceEEEEccchHHHHHHHHHHhcCCccccceeEecCCC-CeEEeCCCCcccccchhhhcCCCCccCcHHHHH
Confidence 9999999999999999999999999999999999999999999986 379999999999888888999994499999999
Q ss_pred HHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHh
Q 016110 318 AWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 391 (395)
Q Consensus 318 S~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l 391 (395)
|++|||+|||+.+.+..+.++|++|++||.+|+++|++|+|||+.+.|. +++.+||+||+|+|+++|+++|
T Consensus 329 S~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~g~---~~~~~~T~e~~daV~~~l~~~~ 399 (399)
T 1zor_A 329 AWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQPFTEPP---IDKYVTLEEFIDEVKKNLEKLL 399 (399)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCGGGGGGCSSC---CCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCC---CCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999876666678899999999999999999999998422230 0124799999999999997543
No 6
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=8.4e-101 Score=782.73 Aligned_cols=390 Identities=66% Similarity=1.059 Sum_probs=334.9
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 1 MTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|.+.+|++++++++.++++|+|+++++|+++++++|+++|++++++|++++++||||++||...+++|.++.++|+|+|+
T Consensus 33 ig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~~~~~e~~l~~~~~s~~~ 112 (427)
T 2qfy_A 33 MTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNG 112 (427)
T ss_dssp HHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHTTCSSCCCCHHH
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCCcccchhhhcccccchHH
Confidence 34678999999999999999999999999999999999999999999999999999999997654445556667999999
Q ss_pred hHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCC--CCccchhhhccccCC
Q 016110 81 TIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG--KDEKTELEVYNFTGE 158 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~--g~~~~~~~~~~~~~~ 158 (395)
.||+.||||+|+||++++++|++.|+++.+++|+||+++|.|.+.++.+.++++..+.|.+++ |....+.....+.+
T Consensus 113 ~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~teG~~~~~~~~~~~~~- 191 (427)
T 2qfy_A 113 TIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG- 191 (427)
T ss_dssp HHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCTTTSCCEEEEEEEESS-
T ss_pred HHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccccCCccccccccccCCC-
Confidence 999999999999999888888887877777888888888888888877777776555554443 21111111111111
Q ss_pred cceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHH
Q 016110 159 GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMV 238 (395)
Q Consensus 159 ~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a 238 (395)
.++++..++|+++++||+|+||+||++|++|||+|||+|||+.|+|||+++|+|||+++||++|++++|+++|++||+||
T Consensus 192 ~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~~~~~I~~e~~~VD~~a 271 (427)
T 2qfy_A 192 SGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMV 271 (427)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTCCEEEEEHHHHH
T ss_pred ceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhCCCcccCCeEEEEEEEHHHHH
Confidence 46666688999999999999999999998899999999999999999999999997569997777777999999999999
Q ss_pred HHHHhCCCccEEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHH
Q 016110 239 AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFA 318 (395)
Q Consensus 239 ~~lv~~P~~FViv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS 318 (395)
||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+||||||++++||||||++|||+|+|||
T Consensus 272 mqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~diAGk~~~ANP~A~IlS 351 (427)
T 2qfy_A 272 AQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFA 351 (427)
T ss_dssp HHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHH
T ss_pred HHHHhCCCceEEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccccchhhcCCCCccCcHHHHHH
Confidence 99999999999999999999999999999999999999999998634899999999999999999999933999999999
Q ss_pred HHHHHHHhcccCCchhhHHHHHHHHHHHHHHHh-cCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhcc
Q 016110 319 WSRGLAHRAKLDNNARLLDFTEKLEAACIGTVE-SGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSG 393 (395)
Q Consensus 319 ~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~-~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~~ 393 (395)
++|||+|||+++.|..+.++|++|++||.+|++ +|++|+|||+.+ |+ ..+++.++|+||+|+|+++|++.|..
T Consensus 352 ~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G~~T~Dlgg~~-g~-~~~~~~~~T~e~~daV~~~l~~~l~~ 425 (427)
T 2qfy_A 352 WSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALAC-GN-NERSAYVTTEEFLDAVEKRLQKEIKS 425 (427)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHT-TC-CSGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCCCccccccccC-Cc-cccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999877677778999999999999999 999999997311 31 11123589999999999999888764
No 7
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=2.6e-97 Score=734.47 Aligned_cols=312 Identities=21% Similarity=0.210 Sum_probs=288.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+..+.++.+.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.... .+++|+|++|||
T Consensus 16 v~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~-------~~~~s~~l~lR~ 88 (333)
T 1x0l_A 16 VIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV-------PGFFGAIRYLRR 88 (333)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-------TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC-------cCccChhHHHHH
Confidence 5678888899999999999999999999999999999999999999999999999996321 257899999999
Q ss_pred hcCceEEeeceeccCCCCCCCCC-CCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEE
Q 016110 85 ILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 163 (395)
Q Consensus 85 ~ldlya~~RPi~~~~~~~l~~~~-~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 163 (395)
+||||+|+||++. +| +.+.. ++|+|||||||||+|+|.++. + +++++
T Consensus 89 ~ldlyan~RP~~~--~p-~~s~~~~vD~vivREnteg~Y~g~~~~----------------------------~-~~~a~ 136 (333)
T 1x0l_A 89 RLDLYANVRPAKS--RP-VPGSRPGVDLVIVRENTEGLYVEQERR----------------------------Y-LDVAI 136 (333)
T ss_dssp HTTCCEEEEEEEC--CS-STTCCSSCEEEEEEECGGGTCCCCEEE----------------------------E-TTEEE
T ss_pred HcCCEEEEEEEee--cc-CCCCCCCCCEEEEecCccceecccccc----------------------------C-CCeEE
Confidence 9999999999863 44 43333 699999999999999997542 0 34777
Q ss_pred E-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHH
Q 016110 164 S-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYA 241 (395)
Q Consensus 164 ~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~l 241 (395)
+ +++|++++|||+|+||+||++| ++|||+|||+|||+.++|+|+++|+||| ++|| +|+++|++||+|||||
T Consensus 137 ~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva-~eyp------~I~~~~~~vD~~~m~l 209 (333)
T 1x0l_A 137 ADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVA-KDFP------LVNVQDIIVDNCAMQL 209 (333)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHH-HHCC------CceEEEEEHHHHHHHH
Confidence 7 9999999999999999999999 4579999999999999999999999997 7999 8999999999999999
Q ss_pred HhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHH
Q 016110 242 LKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS 320 (395)
Q Consensus 242 v~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~a 320 (395)
|++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+||||| ||||||+ |||+|+|||++
T Consensus 210 v~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~--a~fEp~HGSAP-----diaGk~i-ANP~A~IlS~a 281 (333)
T 1x0l_A 210 VMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTT--AVFEPVHGSAP-----DIAGKGI-ANPTAAILSAA 281 (333)
T ss_dssp HHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSC--EEEEESSCCCG-----GGTTSSC-CCCHHHHHHHH
T ss_pred hhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCc--eEEeCCCCChh-----hhcCCCC-cCcHHHHHHHH
Confidence 9999999 99999999999999999999999999999999985 89999999999 9999999 99999999999
Q ss_pred HHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 321 RGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 321 mmL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
|||+|||+ .++|++|++||.+|+++|++|+||| | .+||+||+|+|+++|+
T Consensus 282 mmL~~lg~-------~~~A~~Ie~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~daV~~~l~ 331 (333)
T 1x0l_A 282 MMLDYLGE-------KEAAKRVEKAVDLVLERGPRTPDLG----G-------DATTEAFTEAVVEALK 331 (333)
T ss_dssp HHHHHHTC-------HHHHHHHHHHHHHHHHHSCCCGGGT----C-------CCCHHHHHHHHHHHHH
T ss_pred HHHHhcCc-------HHHHHHHHHHHHHHHHcCCccCccC----C-------CCCHHHHHHHHHHHHh
Confidence 99999995 7899999999999999999999997 6 6799999999999995
No 8
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=1.3e-96 Score=737.13 Aligned_cols=317 Identities=18% Similarity=0.192 Sum_probs=284.3
Q ss_pred CCceEEEEEecch-hhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeece
Q 016110 17 FLELDIKYFDLGL-PNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPI 95 (395)
Q Consensus 17 ~~~i~~~~~~~G~-~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi 95 (395)
+++|+|+++++|. ++++++|+++|++++++|+++|++||||+++|.+.+ . + ...+|+|+.|||.||||+|+||+
T Consensus 36 ~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~--~-~--~~~~s~~l~LR~~ldlyanvRP~ 110 (364)
T 3flk_A 36 GLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDKVP--D-H--ISLWGSLLKFRREFDQYVNIRPV 110 (364)
T ss_dssp TCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTTBC--H-H--HHHHTTHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCcccCC--C-C--cCcccchHHHHHHhCCeEEEEEE
Confidence 6899999999999 999999999999999999999999999999996311 0 0 01368899999999999999998
Q ss_pred ec-cCCC-CCCCC--CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHH
Q 016110 96 IC-KNVP-RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDE 170 (395)
Q Consensus 96 ~~-~~~~-~l~~~--~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~ 170 (395)
+. ++++ |+++. .++|+|||||||||+|+|.++.... + . .++++++ ++||++
T Consensus 111 ~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~~------------~-----------~-~~~~a~~~~~~T~~ 166 (364)
T 3flk_A 111 RLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFE------------N-----------T-ENEIVIQESIFTRR 166 (364)
T ss_dssp ECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEEST------------T-----------S-TTCEEEEEEEEEHH
T ss_pred eccCCcccccccccCCCCCEEEEeeCCCceecCcCceecc------------C-----------C-CCCEEEEEEEECHH
Confidence 74 5665 55443 3899999999999999998653210 0 0 1467888 999999
Q ss_pred HHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-
Q 016110 171 SIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 248 (395)
Q Consensus 171 ~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F- 248 (395)
++|||+|+||+||++|++ |||+|||+|||+.++|||+++|+||| ++|| +|+++|++||+||||||++|++|
T Consensus 167 ~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva-~eyp------dv~~~~~~vD~~am~lv~~P~~FD 239 (364)
T 3flk_A 167 GVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMA-AHYP------HVSWDKQHIDILCARFVLQPERFD 239 (364)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHH-TTCT------TCEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHH-HHCC------CceEEeeEHHHHHHHHHhCcccCc
Confidence 999999999999999977 69999999999999999999999997 8999 89999999999999999999999
Q ss_pred EEEccCccccccchhhhhhcCCcccccccccCCCCc-ceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHHhc
Q 016110 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRA 327 (395)
Q Consensus 249 Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~-~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg 327 (395)
||||+|||||||||++|+++|||||+||+|||+++. ++||||+||||| ||||||+ |||+|+|||++|||+|||
T Consensus 240 Vivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~HGSAP-----diAGk~i-ANP~A~IlS~ammL~~lg 313 (364)
T 3flk_A 240 VVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAP-----DIFGKNI-ANPIAMIWSGALMLEFLG 313 (364)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCT-----TTTTSSC-CCCHHHHHHHHHHHHHHH
T ss_pred EEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCCCCch-----hhcCCCc-cCcHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998852 489999999999 9999999 999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 328 KLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 328 ~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
.++ ..+.++|++|++||.+|+++|++|+||| | .+||+||+|+|+++|+
T Consensus 314 ~~~--~~~~~~A~~Ie~Av~~~l~~G~~T~Dlg----g-------~~~T~e~~~aV~~~l~ 361 (364)
T 3flk_A 314 QGD--ERYQRAHDDMLNAIERVIADGSVTPDMG----G-------TLSTQQVGAAISDTLA 361 (364)
T ss_dssp TTC--HHHHHHHHHHHHHHHHHHHHTCCCGGGT----C-------CCCHHHHHHHHHHHHH
T ss_pred ccc--chhHHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHHHHHHh
Confidence 554 3358999999999999999999999998 6 7999999999999996
No 9
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=6.2e-97 Score=740.81 Aligned_cols=319 Identities=20% Similarity=0.196 Sum_probs=281.2
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|++||++++++|+++|++||||+++|.+..++ ..+++++++|+.|||.||||+|+||++
T Consensus 44 g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~~~~~--~~~~~~~~~~l~LRk~ldLyaNvRP~~ 121 (375)
T 3vmk_A 44 DLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKWEHLP--PNDQPERGALLPLRGHFELFCNMRPAK 121 (375)
T ss_dssp TCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTSC--STTSHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCccCCC--ccccccccchHHHHHHcCCeEEEEEEe
Confidence 689999999999999999999999999999999999999999999643111 012234456899999999999999997
Q ss_pred c-cCCC---CCCC---CCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeC
Q 016110 97 C-KNVP---RLIP---GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNT 168 (395)
Q Consensus 97 ~-~~~~---~l~~---~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~T 168 (395)
. ++++ |+++ ..++|+|||||||||+|+|.++.... + .+ .+++++ ++||
T Consensus 122 ~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~----------~-------------~~-~~~a~~~~~~T 177 (375)
T 3vmk_A 122 LHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQG----------E-------------GE-NEEAFDTMRYS 177 (375)
T ss_dssp CCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEEC----------C-------------GG-GCEEEEEEEEE
T ss_pred ccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCcccccc----------C-------------CC-CceEEEEEEEc
Confidence 5 5664 5544 35899999999999999997653210 0 01 357777 9999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc
Q 016110 169 DESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY 248 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F 248 (395)
|+++|||+|+||+||++|++|||+|||+|||+ +++||+++|+||| ++|| +|++++++||+||||||++|++|
T Consensus 178 r~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~eva-~eyp------dV~~~~~~VD~~am~lv~~P~~F 249 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEVA-KDYP------DVELEHIYIDNATMQLLRRPNEF 249 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHHH-HHCC------CceEeeeeHHHHHHHHHhCcccC
Confidence 99999999999999999988999999999998 6799999999997 7999 89999999999999999999999
Q ss_pred -EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH-h
Q 016110 249 -VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH-R 326 (395)
Q Consensus 249 -Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~-l 326 (395)
||||+|||||||||++|+++|||||+||+|||+++ ++||||+||||| ||||||+ |||+|+|||++|||+| |
T Consensus 250 DViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP-----dIAGk~i-ANP~A~IlS~amML~~~l 322 (375)
T 3vmk_A 250 DVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG-FGMYEPAGGSAP-----DIAGQGI-ANPVAQILSAALLLRHSL 322 (375)
T ss_dssp SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCT-----TTTTSSC-SCCHHHHHHHHHHHHHTT
T ss_pred cEEEECchhHHHHHHHHHHhcCCccccceeeeCCCC-ceEEecCCCCch-----hccCCCc-cCcHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999986 599999999999 9999999 9999999999999999 8
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 327 AKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 327 g~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
|+ .++|++|++||.+|+++|++|+||++.++| .+.++|+||+|+|+++|+
T Consensus 323 g~-------~~~A~~Ie~AV~~~l~~G~~T~Dl~g~~~G-----~~~~~T~e~~~aV~~~l~ 372 (375)
T 3vmk_A 323 KL-------EDAALAIEAAVSKALSDGYLTCELLPASER-----SQAKSTSQMGDYIAQAIA 372 (375)
T ss_dssp CC-------HHHHHHHHHHHHHHHHTTCCCGGGSCGGGG-----GGCCCHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHHHHcCCCCchhccCCCC-----CCccCHHHHHHHHHHHHh
Confidence 85 789999999999999999999999411113 136999999999999985
No 10
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=8.1e-97 Score=736.77 Aligned_cols=311 Identities=22% Similarity=0.198 Sum_probs=278.8
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..++. ..++++++|+.|||+||||+|+||++
T Consensus 37 ~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~~~--~~~~~~~~~l~LRk~ldLyaNvRP~~ 114 (361)
T 3udu_A 37 NFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPI--DQRPERASLLPLRKHFNLFANLRPCK 114 (361)
T ss_dssp TCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTSCG--GGSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCCCCC--CcCccccchHHHHHHcCCEEEEEEee
Confidence 6899999999999999999999999999999999999999999996421110 11122344899999999999999997
Q ss_pred c-cCCC---CCCC---CCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeC
Q 016110 97 C-KNVP---RLIP---GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNT 168 (395)
Q Consensus 97 ~-~~~~---~l~~---~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~T 168 (395)
. ++++ |+++ ..++|+|||||||||+|+|.++.. .+++++ ++||
T Consensus 115 ~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~-----------------------------~~~a~~~~~~T 165 (361)
T 3udu_A 115 IYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG-----------------------------KESAYDTEIYT 165 (361)
T ss_dssp CCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC-----------------------------SSEEEEEEEEE
T ss_pred ccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc-----------------------------CceEEEEEecc
Confidence 4 5553 5544 348999999999999999965421 236677 9999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc
Q 016110 169 DESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY 248 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F 248 (395)
|+++|||+|+||+||++|++|||+|||+|||+ ++|||+++|+||| ++|| +|+++|++||+||||||++|++|
T Consensus 166 r~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~eva-~eyp------dV~~~~~~VD~~am~lv~~P~~F 237 (361)
T 3udu_A 166 KKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANVA-KDYQ------DINLEYMYVDNAAMQIVKNPSIF 237 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGCT------TSEEEEEEHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHHH-HHCC------CCeEEeeeHHHHHHHHHhCcccC
Confidence 99999999999999999988999999999996 9999999999997 7999 89999999999999999999999
Q ss_pred -EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH-h
Q 016110 249 -VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH-R 326 (395)
Q Consensus 249 -Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~-l 326 (395)
||||+|||||||||++|+++|||||+||+|||+++ ++||||+||||| ||||||+ |||+|+|||++|||+| |
T Consensus 238 DViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP-----dIAGk~i-ANP~A~IlS~amML~~~l 310 (361)
T 3udu_A 238 DVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKG-FGLYEPAGGSAP-----DIAHLNI-ANPIAQILSAALMLKYSF 310 (361)
T ss_dssp SEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTS-CEEEEESSCCCG-----GGTTSSC-CCCHHHHHHHHHHHHHTS
T ss_pred cEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCC-CeeeecCCCChh-----hhcCCCc-cCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999876 599999999999 9999999 9999999999999999 8
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHH
Q 016110 327 AKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 389 (395)
Q Consensus 327 g~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~ 389 (395)
|+ .++|++|++||.+|+++|++|+||| |. +.+||+||+|+|+++|++
T Consensus 311 g~-------~~~A~~Ie~Av~~~l~~g~~T~Dlg----G~-----~~~~T~e~~~aV~~~l~~ 357 (361)
T 3udu_A 311 KE-------EQAAQDIENAISLALAQGKMTKDLN----AK-----SYLNTDEMGDCILEILKE 357 (361)
T ss_dssp CC-------HHHHHHHHHHHHHHHHTTCCCTTTC----SS-----SCCCHHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHHHHcCCcCcCCC----CC-----CccCHHHHHHHHHHHHHh
Confidence 85 7899999999999999999999998 52 479999999999999975
No 11
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=2.2e-96 Score=738.00 Aligned_cols=316 Identities=20% Similarity=0.209 Sum_probs=276.3
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..++. .....|+|+.|||+||||+|+||++
T Consensus 54 g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~~~~~~---~~~~~~~ll~LRk~ldLyANvRP~k 130 (390)
T 3u1h_A 54 GHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKWDQNPS---ELRPEKGLLGIRKGLDLFANLRPVK 130 (390)
T ss_dssp SCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTTTSSCC---SSSSSCCHHHHHHHTTEEEEEEEEE
T ss_pred CCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCcCCCCc---ccCccchHHHHHHHhCCeEEEEEee
Confidence 7899999999999999999999999999999999999999999996431100 0113478999999999999999987
Q ss_pred c-cCCC---CCCCC--CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCH
Q 016110 97 C-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTD 169 (395)
Q Consensus 97 ~-~~~~---~l~~~--~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr 169 (395)
. ++++ |+++. .++|+|||||||||+|+|.++.... .+ .+++++ ++|||
T Consensus 131 ~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~------------------------~g-~~~a~~~~~~Tr 185 (390)
T 3u1h_A 131 VYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYE------------------------EG-EEAAVDTLLYTR 185 (390)
T ss_dssp CCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------C------------------------TT-CSEEEEEEEEEH
T ss_pred ccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccC------------------------CC-CceEEEEEEecH
Confidence 4 4554 44432 3799999999999999998764210 01 346777 99999
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-
Q 016110 170 ESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 248 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F- 248 (395)
+++|||+|+||+||++|++|||+|||+||| .++|||+++|+||| ++|| +|++++++||+||||||++|++|
T Consensus 186 ~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~eva-~eYP------dV~~~~~~VD~~amqLV~~P~~FD 257 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAEEVA-KEYP------DVELEHMLVDNAAMQLIRNPRQFD 257 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHHHHH-hHCC------CCeEEeeeHHHHHHHHHhCcccCc
Confidence 999999999999999998899999999999 69999999999997 7999 89999999999999999999999
Q ss_pred EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH-hc
Q 016110 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH-RA 327 (395)
Q Consensus 249 Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~-lg 327 (395)
||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||| ||||||+ |||+|+|||++|||+| ||
T Consensus 258 ViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGSAP-----DIAGk~i-ANP~A~IlS~amML~~~lg 330 (390)
T 3u1h_A 258 VIVTENMFGDILSDEASMITGSLGMLPSASLSTDG-LGLYEPVHGSAP-----DIAGKGI-ANPLATILSAAMMLRYSFG 330 (390)
T ss_dssp EEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTS-CEEEEESSCCCT-----TTTTSSC-SCTHHHHHHHHHHHHHHHC
T ss_pred EEEecccchHHHHHHHHHhcCchhhcceeeecCCC-CeeEecCCCChh-----hhcCCCc-CCcHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999875 599999999999 9999999 9999999999999999 88
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHH
Q 016110 328 KLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 389 (395)
Q Consensus 328 ~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~ 389 (395)
+ .++|++|++||.+|+++|++|+||+. .|. +.+||+||+|+|+++|+.
T Consensus 331 ~-------~~~A~~Ie~AV~~vl~~G~~T~Dl~~--gG~-----~~~~T~e~~daV~~~l~~ 378 (390)
T 3u1h_A 331 L-------EEEAKAIEKAVEKVLAEGYRTADIAK--PGG-----KYVSTTEMTDEVKAAVVD 378 (390)
T ss_dssp C-------HHHHHHHHHHHHHHHHHTCCBTTTSC--SSC-----CCBCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHHHHcCCcChhhcc--CCC-----CccCHHHHHHHHHHHHhc
Confidence 5 78999999999999999999999931 031 379999999999999973
No 12
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=3e-96 Score=747.68 Aligned_cols=335 Identities=19% Similarity=0.198 Sum_probs=283.5
Q ss_pred CCceEEEEEecchhhhhccCC--CCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeec
Q 016110 17 FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREP 94 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~--~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RP 94 (395)
+++|+|+++++|.++++++|+ +||++++++|+++|++||||+++|.+. +++|+|++|||.||||+|+||
T Consensus 70 ~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~tP~~~---------~~~s~~l~LRk~LdLyaNlRP 140 (427)
T 3dms_A 70 KKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTPVGG---------GIRSLNVALRQELDLYVCLRP 140 (427)
T ss_dssp SCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCCCCC-------------CCHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCCCCCCc---------ccCChhHHHHHHhCCeEEEEE
Confidence 589999999999999999999 999999999999999999999999753 478999999999999999999
Q ss_pred eec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceee-eee-cCCCCccchhhhccccCCcceEEE-eeeCH
Q 016110 95 IIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKL-VFV-PEGKDEKTELEVYNFTGEGGVALS-MYNTD 169 (395)
Q Consensus 95 i~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~-~~~-~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr 169 (395)
++. ++++ |+++..++|+|||||||||+|+|+++....+...+. .|. .+.|. ....-.++++++ ++||+
T Consensus 141 v~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~a~~~~~~Tr 213 (427)
T 3dms_A 141 IQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMGV-------KKIRFPQTSGIGIKPVSK 213 (427)
T ss_dssp ECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHHHHHHTSCC-------CCCSCGGGCCEECCCCCH
T ss_pred eecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCcccccccccccccccc-------cccccCCcceEEEEEecH
Confidence 874 5665 554435899999999999999998864311000000 000 00000 000001457788 99999
Q ss_pred HHHHHHHHHHHHHHHhCC-CCEEEEeCCCccccccHHHHHHHHHHHHhhccC-------------ccccCCeEEceeeHH
Q 016110 170 ESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS-------------KFEAAGIWYEHRLID 235 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~-------------~~~~~~I~~~~~~VD 235 (395)
++++||+|+||+||++|+ +|||+|||+|||+.|+|||+++|+|||+++||+ .+++++|++++++||
T Consensus 214 ~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD 293 (427)
T 3dms_A 214 EGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIAD 293 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCccccccccccccccccccCceEEEEeeHH
Confidence 999999999999999985 479999999999999999999999998557995 134457999999999
Q ss_pred HHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhH
Q 016110 236 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIA 314 (395)
Q Consensus 236 a~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a 314 (395)
+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++. +||||+||||| ||||||+ |||+|
T Consensus 294 ~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~--a~fEpvHGSAP-----dIAGk~i-ANP~A 365 (427)
T 3dms_A 294 AFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSV--AMFEATHGTAP-----KYAGKDY-VNPGS 365 (427)
T ss_dssp HHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECSSC--EEEEECSCCCG-----GGTTSSC-SCCHH
T ss_pred HHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccceeeeCCCc--ceEEeccCChh-----hhcCCCc-CCcHH
Confidence 9999999999999 99999999999999999999999999999999874 99999999999 9999999 99999
Q ss_pred HHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 315 SIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 315 ~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
+|||++|||+|||+ .++|++|++||.+|+++|++|+|||+.++| .+.+||+||+|+|+++|
T Consensus 366 ~IlS~amML~~lg~-------~~~A~~Ie~AV~~vl~~G~~T~Dlgg~~~g-----~~~~~T~e~~daV~~~l 426 (427)
T 3dms_A 366 EILSAEMMLRHLGW-------TEAADVIISAMEKSIKQKRVTYDFARLMEG-----ATQVSCSGFGQVLIENM 426 (427)
T ss_dssp HHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTEECHHHHTTSSS-----CEECCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHcCCcchhhccccCC-----CCccCHHHHHHHHHHhh
Confidence 99999999999985 789999999999999999999999843223 13699999999999876
No 13
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=3.5e-96 Score=732.28 Aligned_cols=309 Identities=19% Similarity=0.185 Sum_probs=277.8
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..+++ + ++++++ |+.|||+||||+|+||++
T Consensus 34 ~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~~~-~-~~~~~~-~l~LR~~ldlyanvRP~~ 110 (359)
T 2y3z_A 34 GLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPR-K-IRPETG-LLSLRKSQDLFANLRPAK 110 (359)
T ss_dssp TCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTSCG-G-GCHHHH-HHHHHHHTTEEEEEEEEE
T ss_pred CCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccCCc-c-cccchh-HHHHHHHhCCEEEEEEee
Confidence 6899999999999999999999999999999999999999999997432221 1 113456 899999999999999986
Q ss_pred c-cCCC---CCCC--CCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCH
Q 016110 97 C-KNVP---RLIP--GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTD 169 (395)
Q Consensus 97 ~-~~~~---~l~~--~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr 169 (395)
. ++++ |+++ ..++|+|||||||||+|+|.++.. + .+++++ ++||+
T Consensus 111 ~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~---------------------------~-~~~a~~~~~~T~ 162 (359)
T 2y3z_A 111 VFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGM---------------------------S-EAEAWNTERYSK 162 (359)
T ss_dssp CCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEE---------------------------C-SSCEECCCCCCH
T ss_pred ccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcC---------------------------C-CceEEEEEEEcH
Confidence 4 4442 3332 136999999999999999976421 0 346777 99999
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-
Q 016110 170 ESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 248 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F- 248 (395)
+++|||+|+||+||++|++|||+|||+|||+ ++++|+++|+||| ++|| +|++++++||+||||||++|++|
T Consensus 163 ~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~eyp------dI~~~~~~VD~~~mqlv~~P~~FD 234 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEVG-RGYP------DVALEHQYVDAMAMHLVRSPARFD 234 (359)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHHH-HHCC------cEEEEeeEHHHHHHHHhhCccccc
Confidence 9999999999999999988899999999999 9999999999998 8999 89999999999999999999999
Q ss_pred EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH-hc
Q 016110 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH-RA 327 (395)
Q Consensus 249 Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~-lg 327 (395)
||||+|||||||||++|+++|||||+||+|||+++ +||||+||||| ||||||+ |||+|+|||++|||+| ||
T Consensus 235 Vivt~NlfGDILSD~aa~l~GslGl~pSanig~~~--~~fEpvHGSAP-----diAGk~i-ANP~A~IlS~ammL~~slg 306 (359)
T 2y3z_A 235 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGT--PVFEPVHGSAP-----DIAGKGI-ANPTAAILSAAMMLEHAFG 306 (359)
T ss_dssp EEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSC--CEEEESSCCCG-----GGTTSSC-SCTHHHHHHHHHHHHHTTC
T ss_pred EEEEcCcchHHHHHHHHHhcCcccccceeEeCCCC--ceeecCCCChh-----hhCCCCC-cCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999986 59999999999 9999999 9999999999999999 99
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHh
Q 016110 328 KLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 391 (395)
Q Consensus 328 ~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l 391 (395)
+ .++|++|++||.+|+++| +|+||| | .+||+||+|+|+++|++++
T Consensus 307 ~-------~~~A~~Ie~Av~~~l~~g-~T~Dlg----g-------~~~T~e~~daV~~~l~~~~ 351 (359)
T 2y3z_A 307 L-------VELARKVEDAVAKALLET-PPPDLG----G-------SAGTEAFTATVLRHLAAAA 351 (359)
T ss_dssp C-------HHHHHHHHHHHHHHHHHS-CCGGGT----C-------CCCHHHHHHHHHHHHHHHH
T ss_pred C-------hHHHHHHHHHHHHHHHcC-CCCccC----C-------CCCHHHHHHHHHHHHhhhh
Confidence 6 789999999999999999 999997 6 5899999999999997554
No 14
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=8.8e-96 Score=730.44 Aligned_cols=318 Identities=20% Similarity=0.230 Sum_probs=285.0
Q ss_pred HHHHHHHHHhcC----CCceEEEEEecchhhhhccCCCCCHHHHHHHHc-CCeeeecCCCCCcchhhHHHHhhhcCCCcc
Q 016110 5 FWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLK-YNVAIKCATITPDEARVKEFVLKQMWKSPN 79 (395)
Q Consensus 5 ~~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~-~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~ 79 (395)
|..+.++.+.+. +++|+|+++++|+++++++|+++|++++++|++ +|++||||+++|.+.. .+++|+|
T Consensus 25 V~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~~-------~~~~s~~ 97 (366)
T 3ty4_A 25 VVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHKV-------AGYSSPI 97 (366)
T ss_dssp HHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSSCC-------TTCCCHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCCCC-------cccccch
Confidence 455666666653 689999999999999999999999999999999 6999999999997531 1578999
Q ss_pred hhHhhhcCceEEeeceeccCCCCCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCc
Q 016110 80 GTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEG 159 (395)
Q Consensus 80 ~~LRk~ldlya~~RPi~~~~~~~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (395)
+.|||+||||+|+||++ .+|++.+ .++|+|||||||||+|+|.++.... + +.+
T Consensus 98 l~LRk~ldlyaNvRP~~--~~~g~~~-~~vD~vivREnTeG~Y~g~e~~~~~------------~------------~~~ 150 (366)
T 3ty4_A 98 VALRKKMGLYANVRPVK--SLDGAKG-KPVDLVIVRENTECLYVKEERMVQN------------T------------PGK 150 (366)
T ss_dssp HHHHHHTTCCEEEEEEE--CCTTCSS-SCCEEEEEEECSCBGGGCCEEEEEC------------C------------TTC
T ss_pred HHHHHHhCCeEEEEEEe--ccCCCCC-CCCcEEEEeeCCCCEeecCcceecc------------C------------CCC
Confidence 99999999999999985 4455421 2699999999999999998764310 0 014
Q ss_pred ceEEE-eeeCHHHHHHHHHHHHHHHHhC-------------CCCEEEEeCCCccccccHHHHHHHHHHH--HhhccCccc
Q 016110 160 GVALS-MYNTDESIRAFAEASMNTAYQK-------------KWPLYLSTKNTILKKYDGRFKDIFQEVY--EANWKSKFE 223 (395)
Q Consensus 160 ~~a~~-~~~Tr~~~eRiar~AFe~A~~r-------------~~~Vt~v~KaNvl~~t~glf~~~~~eva--~~~yp~~~~ 223 (395)
+++++ ++||++++|||+|+||+||++| ++|||+|||+|||+.++|||+++|+||+ +++||
T Consensus 151 ~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ev~~~a~eyp---- 226 (366)
T 3ty4_A 151 RVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYA---- 226 (366)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHHHGGGCGGGT----
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHHHHHhHhhCC----
Confidence 67888 9999999999999999999998 5689999999999999999999999993 38999
Q ss_pred cCCeEEceeeHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCccccccccc
Q 016110 224 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 302 (395)
Q Consensus 224 ~~~I~~~~~~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~d 302 (395)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++ .+||||+||||| |
T Consensus 227 --dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~--~a~fEpvHGSAP-----d 297 (366)
T 3ty4_A 227 --SINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDN--FVMSEPVHGSAP-----D 297 (366)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSS--CEEECCSSCCCT-----T
T ss_pred --CceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCC--ceEEecCCCChh-----h
Confidence 89999999999999999999999 9999999999999999999999999999999976 499999999999 9
Q ss_pred ccCCCcccChhHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHH
Q 016110 303 QKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFID 381 (395)
Q Consensus 303 IAGk~i~ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~d 381 (395)
|||||+ |||+|+|||++|||+|||+ .++|++|++||.+|+++| ++|+||| | .++|+||+|
T Consensus 298 IaGk~i-ANP~A~IlS~amML~~lg~-------~~~A~~Ie~Av~~~l~~G~~~T~Dlg----g-------~~~T~e~~d 358 (366)
T 3ty4_A 298 IAGRGI-ANPVATFRSVALMLEFMGH-------QDAAADIYTAVDKVLTEGKVLTPDLG----G-------KSGTNEITD 358 (366)
T ss_dssp TTTSSC-CCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHCSSCCGGGT----S-------CCCHHHHHH
T ss_pred cCCCCc-cCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHH
Confidence 999999 9999999999999999985 789999999999999999 9999998 6 799999999
Q ss_pred HHHHHHH
Q 016110 382 AVADDLR 388 (395)
Q Consensus 382 aV~~~l~ 388 (395)
+|+++|+
T Consensus 359 aV~~~l~ 365 (366)
T 3ty4_A 359 AVLANIH 365 (366)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9999874
No 15
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=1.2e-95 Score=730.36 Aligned_cols=316 Identities=20% Similarity=0.178 Sum_probs=279.3
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..++. ...+++++|+.|||+||||+|+||++
T Consensus 35 ~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~~~--~~~~e~~~~l~LR~~ldlyanvRP~~ 112 (363)
T 1cnz_A 35 DMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENLPP--ESQPERGALLPLRKHFKLFSNLRPAK 112 (363)
T ss_dssp TCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTSCG--GGSTTHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccccCCc--ccCcccchHHHHHHHcCCEEEEEEEE
Confidence 6899999999999999999999999999999999999999999996432211 11245677999999999999999997
Q ss_pred c-cCCC---CCCCC---CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeC
Q 016110 97 C-KNVP---RLIPG---WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNT 168 (395)
Q Consensus 97 ~-~~~~---~l~~~---~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~T 168 (395)
+ ++++ |+++. .++|+|||||||||+|+|.++.... + ++ .+++++ ++||
T Consensus 113 ~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~------------~-----------~~-~~~a~~~~~~T 168 (363)
T 1cnz_A 113 LYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREG------------S-----------GQ-YEKAFDTEVYH 168 (363)
T ss_dssp CCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEEC------------C-----------GG-GCEEEEEEEEE
T ss_pred ecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCcccc------------C-----------CC-CceEEEEEEEc
Confidence 5 4442 34321 3699999999999999997532100 0 01 356777 9999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc
Q 016110 169 DESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY 248 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F 248 (395)
+++++||+|+||+||++|++|||+|||+|||+ +++||+++|+||| ++|| +|+++|++||+||||||++|++|
T Consensus 169 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~eyp------dI~~~~~~vD~~~m~lv~~P~~F 240 (363)
T 1cnz_A 169 RFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA-KTYP------DVELAHMYIDNATMQLIKDPSQF 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HHCC------CceEeeeeHHHHHHHHhhCcccc
Confidence 99999999999999999988899999999999 9999999999997 8999 89999999999999999999999
Q ss_pred -EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH-h
Q 016110 249 -VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH-R 326 (395)
Q Consensus 249 -Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~-l 326 (395)
||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||| ||||||+ |||+|+|||++|||+| |
T Consensus 241 DVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP-----diAGk~i-ANP~A~IlS~ammL~~~l 313 (363)
T 1cnz_A 241 DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAP-----DIAGKNI-ANPIAQILSLALLLRYSL 313 (363)
T ss_dssp SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCG-----GGTTTTC-SCCHHHHHHHHHHHHHHS
T ss_pred eEEEECCcchHHHHHHHHHhcCCCcccccceeCCCC-CeEEEcCCCChh-----hhcCCCc-cCcHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999986 589999999999 9999999 9999999999999999 9
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 327 AKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 327 g~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
|+ .++|++|++||.+|+++|++|+||++ |. +.++|+||+|+|+++|+
T Consensus 314 g~-------~~~A~~Ie~Av~~~l~~g~~T~Dl~g---G~-----~~~~T~e~~daV~~~l~ 360 (363)
T 1cnz_A 314 DA-------NDAATAIEQAINRALEEGVRTGDLAR---GA-----AAVSTDEMGDIIARYVA 360 (363)
T ss_dssp SC-------HHHHHHHHHHHHHHHHTTCCCGGGTT---TT-----TCCCHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHHHhcCCcCcccCC---CC-----CCCCHHHHHHHHHHHHh
Confidence 85 78999999999999999999999931 51 13899999999999996
No 16
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=1.5e-95 Score=728.85 Aligned_cols=323 Identities=18% Similarity=0.161 Sum_probs=281.1
Q ss_pred HHHHHHHhcC----CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhH
Q 016110 7 KSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTI 82 (395)
Q Consensus 7 ~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~L 82 (395)
.+.++.+.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..++. . +++.+++|+.|
T Consensus 29 ~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~~~-~-~r~~~~~~l~L 106 (366)
T 1vlc_A 29 REALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDLPP-E-KRPEIGGLLAL 106 (366)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTSCS-T-TSHHHHTHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccCCc-c-cCcccchhHHH
Confidence 3444444444 7899999999999999999999999999999999999999999996421110 0 00112348999
Q ss_pred hhhcCceEEeeceec-cCCC---CCCCC---CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccc
Q 016110 83 RNILNGTVFREPIIC-KNVP---RLIPG---WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNF 155 (395)
Q Consensus 83 Rk~ldlya~~RPi~~-~~~~---~l~~~---~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 155 (395)
||+||||+|+||+++ ++++ |+++. .++|+|||||||||+|+|.++..
T Consensus 107 Rk~ldlyaN~RP~~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~-------------------------- 160 (366)
T 1vlc_A 107 RKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGL-------------------------- 160 (366)
T ss_dssp HHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEE--------------------------
T ss_pred HHHhCCEEEEEEccccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCcccc--------------------------
Confidence 999999999999975 5554 44321 36999999999999999976532
Q ss_pred cCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeH
Q 016110 156 TGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLI 234 (395)
Q Consensus 156 ~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~V 234 (395)
+ ++++++ ++||+++++||+|+||+||++|++|||+|||+|||+ ++|||+++|+||| ++|| +|++++++|
T Consensus 161 -~-~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~eva-~eyp------dV~~~~~~V 230 (366)
T 1vlc_A 161 -D-EEKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEVA-REYP------DVELTHIYV 230 (366)
T ss_dssp -C-SSCEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTCT------TSEEEEEEH
T ss_pred -C-CCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHHH-HHCC------CceEEeeeH
Confidence 1 346777 999999999999999999999988899999999999 9999999999997 7999 899999999
Q ss_pred HHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChh
Q 016110 235 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSI 313 (395)
Q Consensus 235 Da~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~ 313 (395)
|+||||||++|++| ||||+|||||||||++|+++|||||+||+||| + .+||||+||||| ||||||+ |||+
T Consensus 231 D~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~--~alfEpvHGSAP-----dIAGk~i-ANP~ 301 (366)
T 1vlc_A 231 DNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-D--KNLYEPAGGSAP-----DIAGKNI-ANPI 301 (366)
T ss_dssp HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-S--SEEEEESSCCCT-----TTTTTTC-SCCH
T ss_pred HHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-C--ceeeecCCCchh-----hcCCCCc-cCcH
Confidence 99999999999999 99999999999999999999999999999999 5 489999999999 9999999 9999
Q ss_pred HHHHHHHHHHHH-hcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHH
Q 016110 314 ASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAR 390 (395)
Q Consensus 314 a~IlS~ammL~~-lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~ 390 (395)
|+|||++|||+| ||+ .++|++|++||.+|+++|++|+|||. +|+ +.+||+||+|+|+++|+.+
T Consensus 302 A~IlS~ammL~~slg~-------~~~A~~Ie~Av~~~l~~g~~T~Dlg~--~gg-----~~~~T~e~~daV~~~l~~~ 365 (366)
T 1vlc_A 302 AQILSLAMMLEHSFGM-------VEEARKIERAVELVIEEGYRTRDIAE--DPE-----KAVSTSQMGDLICKKLEEI 365 (366)
T ss_dssp HHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHTTCCCGGGCS--SGG-----GCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHcCCccccccc--CCC-----CCcCHHHHHHHHHHHHHhh
Confidence 999999999999 995 78999999999999999999999972 121 1289999999999999643
No 17
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=5.9e-95 Score=735.22 Aligned_cols=333 Identities=21% Similarity=0.247 Sum_probs=280.4
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|+++|++++++|++++++||||+++|... +++|+|++||+.||||+|+||++
T Consensus 58 ~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~---------~~~s~~l~LR~~LdlyanvRPv~ 128 (409)
T 2e0c_A 58 SREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETPIGK---------GWKSVNVAIRLMLDLYANIRPVK 128 (409)
T ss_dssp SCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC-----------------CHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcc---------cccChhHHHHHHcCCEEEEEEEe
Confidence 589999999999999999999999999999999999999999999642 57899999999999999999998
Q ss_pred c-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceee-eeecCCCCccchhhhccccCCcceEEE-eeeCHHHH
Q 016110 97 C-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKL-VFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESI 172 (395)
Q Consensus 97 ~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~~ 172 (395)
. +++| |+++..++|+|||||||||+|+|.++....++..++ .|.++ +.. ..+ .++++++ ++||++++
T Consensus 129 ~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~~~~~~v~~f~~~------~~~-~~~--~~~~a~~~~~~t~~~~ 199 (409)
T 2e0c_A 129 YIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRK------ELK-VEI--EDDTGIGIKVMSKYKT 199 (409)
T ss_dssp CCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHHHHHH------HSC-CCC--CSSEEEEEEEEEHHHH
T ss_pred ccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCCCcccchhhccch------hcc-ccC--CCceEEEEEEecHHHH
Confidence 4 6776 454433799999999999999998764211100000 00000 000 001 1467888 99999999
Q ss_pred HHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCcc-----------ccCCeEEceeeHHHHHHH
Q 016110 173 RAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF-----------EAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 173 eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~-----------~~~~I~~~~~~VDa~a~~ 240 (395)
+||+|+||+||++|++ +||+|||+|||+.|+|+|+++|+|||+++||+++ ++++|+++|++||+||||
T Consensus 200 eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mq 279 (409)
T 2e0c_A 200 QRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQ 279 (409)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHhCCCccccccccccccccCCeEEEEEEEHHHHHHH
Confidence 9999999999999965 6999999999999999999999999844999533 223499999999999999
Q ss_pred HHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHH
Q 016110 241 ALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW 319 (395)
Q Consensus 241 lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ 319 (395)
||++|++| ||||+|||||||||++|+++|||||+||+|||++ .+||||+||||| ||||||+ |||+|+|||+
T Consensus 280 lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~--~a~fEp~HGSAP-----diAGk~i-ANP~A~IlS~ 351 (409)
T 2e0c_A 280 IIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDE--GGMFEAIHGTAP-----KYAGKNV-ANPTGIIKAG 351 (409)
T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEETT--EEEEEESSCCCG-----GGTTTTC-SCTHHHHHHH
T ss_pred HhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceEEECCC--ceEEecCCCChh-----hhcCCcc-cCcHHHHHHH
Confidence 99999999 9999999999999999999999999999999976 489999999999 9999999 9999999999
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
+|||+|||+ .++|++|++||.+|+++|++|+||++.+.| +.++|+||+|+|+++|+
T Consensus 352 ammL~~lg~-------~~~A~~Ie~Av~~~l~~g~~T~Dl~g~~g~------~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 352 ELMLRWMGW-------NEAADLIEKAINMAIRDKKVTQDIARFMGV------KALGTKEYADELIKIMD 407 (409)
T ss_dssp HHHHHHHTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHHTS------CCCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCC-------HHHHHHHHHHHHHHHHcCCccccccccCCC------CCcCHHHHHHHHHHHHh
Confidence 999999996 789999999999999999999999742213 36899999999999985
No 18
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=5.9e-95 Score=718.43 Aligned_cols=310 Identities=20% Similarity=0.232 Sum_probs=282.5
Q ss_pred HHHHHHHhcC----CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhH
Q 016110 7 KSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTI 82 (395)
Q Consensus 7 ~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~L 82 (395)
...++.+.+. +++|+|+++++|+++++++|+++|++++++|++++++||||+++|.+. +|++|
T Consensus 18 ~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~~-------------~~l~l 84 (336)
T 1wpw_A 18 SKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAAD-------------VVVKL 84 (336)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHHH-------------HHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCcc-------------hHHHH
Confidence 3444444444 789999999999999999999999999999999999999999999521 58999
Q ss_pred hhhcCceEEeeceeccCCCCCCCCC-CCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcce
Q 016110 83 RNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 161 (395)
Q Consensus 83 Rk~ldlya~~RPi~~~~~~~l~~~~-~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (395)
||.||||+|+||++ .+|++.+.+ ++|+|||||||||+|+|.++.. + +++
T Consensus 85 R~~ldlyan~RP~~--~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~---------------------------~-~~v 134 (336)
T 1wpw_A 85 RQIYDMYANIRPAK--SIPGIDTKYGNVDILIVRENTEDLYKGFEHIV---------------------------S-DGV 134 (336)
T ss_dssp HHTTTCCEEEEEEE--CCTTTCCSCSCCEEEEEEECSSBTTTCCEEEE---------------------------E-TTE
T ss_pred HHHhCCEEEEEEEe--ccCCCCCCCCCCcEEEEecCccCeEcCCcccc---------------------------C-CCe
Confidence 99999999999985 345444444 6999999999999999976531 0 357
Q ss_pred EEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHH
Q 016110 162 ALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 240 (395)
Q Consensus 162 a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~ 240 (395)
+++ ++||+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+||| ++ +|+++|++||+|+||
T Consensus 135 a~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva-~~--------~I~~~~~~vD~~~~~ 205 (336)
T 1wpw_A 135 AVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVL-KG--------KVEYSEMYVDAAAAN 205 (336)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHH-TT--------TSEEEEEEHHHHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHH-Hh--------CceeEEEeHHHHHHH
Confidence 887 99999999999999999999998889999999999999999999999997 43 699999999999999
Q ss_pred HHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHH
Q 016110 241 ALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW 319 (395)
Q Consensus 241 lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ 319 (395)
||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ +||||+||||| ||||||+ |||+|+|||+
T Consensus 206 lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEp~HGSAp-----diaGk~i-ANP~A~IlS~ 277 (336)
T 1wpw_A 206 LVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKK--ALFEPVHGAAF-----DIAGKNI-GNPTAFLLSV 277 (336)
T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSC--EEEEESSCCCT-----TTTTSSC-CCTHHHHHHH
T ss_pred HhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCC--ceEeCCCCCch-----hhCCCCC-cCcHHHHHHH
Confidence 99999999 99999999999999999999999999999999985 89999999999 9999999 9999999999
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
+|||+|||++++|..+.++|++|++||.+|+++| ++|+||| | .++|+||+|+|+++|
T Consensus 278 ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~T~Dlg----G-------~~~T~e~~dav~~~l 335 (336)
T 1wpw_A 278 SMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVG----G-------NATTDDLINEIYNKL 335 (336)
T ss_dssp HHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCCGGGT----C-------CCCHHHHHHHHHHSC
T ss_pred HHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCccCCccC----C-------CCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999 8999997 6 679999999999875
No 19
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=5.2e-95 Score=739.43 Aligned_cols=335 Identities=20% Similarity=0.157 Sum_probs=286.7
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|+++|++++++|++++++||||++||.+. +|+|+|++||+.||||+|+||++
T Consensus 69 ~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~~---------~~~s~~l~LRk~LdlyanlRPv~ 139 (435)
T 1tyo_A 69 SRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVGT---------GYRSLNVAIRQALDLYANIRPVR 139 (435)
T ss_dssp SCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCTTS---------CTTHHHHHHHHHHTCCEEEEEEE
T ss_pred CcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCCCcc---------cccChhHHHHHHcCCEEEeEEEE
Confidence 589999999999999999999999999999999999999999999643 57899999999999999999998
Q ss_pred ccCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHHHHHH
Q 016110 97 CKNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRA 174 (395)
Q Consensus 97 ~~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~~eR 174 (395)
+.++| |+++.+++|+|||||||||+|+|.++... ++..+..+.. ...... ....++++++ ++||+++++|
T Consensus 140 ~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~-~~~~~~v~~~-----~~~~~~--~~~~~~~a~~~~~~T~~~~eR 211 (435)
T 1tyo_A 140 YYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHD-SPEAARIRRF-----LAEEFG--ISIREDAGIGVKPISRFATRR 211 (435)
T ss_dssp CCSCCCSBTTGGGCEEEEEEECSSSGGGCCEECTT-SHHHHHHHHH-----HHHHHC--CCCCTTEEEEEEEEEHHHHHH
T ss_pred ecCCCCCCCCcCCCcEEEEecCCCCeecccccccC-Cccccceecc-----chhhcc--ccCCCCeEEEEEEecHHHHHH
Confidence 65776 55443579999999999999999876421 1100000000 000000 0001467888 9999999999
Q ss_pred HHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccC-cc-------------ccCCeEEceeeHHHHHH
Q 016110 175 FAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS-KF-------------EAAGIWYEHRLIDDMVA 239 (395)
Q Consensus 175 iar~AFe~A~~r-~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~-~~-------------~~~~I~~~~~~VDa~a~ 239 (395)
|+|+||+||++| +++||+|||+|||+.|+|+|+++|+|||+++||+ .| ++.+|+++|++||+|+|
T Consensus 212 Iar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~m 291 (435)
T 1tyo_A 212 LMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQ 291 (435)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccccccccccccccccCCeEEEEeeeHHHHHH
Confidence 999999999998 5579999999999999999999999998449995 12 33459999999999999
Q ss_pred HHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHH
Q 016110 240 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFA 318 (395)
Q Consensus 240 ~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS 318 (395)
|||++|++| ||||+|||||||||++|+++|||||+||+|||++. +||||+||||| ||||||+ |||+|+|||
T Consensus 292 qlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSanig~~~--a~fEpvHGSAP-----diAGk~i-ANP~A~IlS 363 (435)
T 1tyo_A 292 QIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDGI--AVAEPVHGTAP-----KYAGKDL-INPSAEILS 363 (435)
T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSSC--EEEEESSCCCG-----GGTTSSC-SCCHHHHHH
T ss_pred HHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceeeECCCc--eeeecCCCChH-----HhcCCCC-cCcHHHHHH
Confidence 999999999 99999999999999999999999999999999875 89999999999 9999999 999999999
Q ss_pred HHHHH-HHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 319 WSRGL-AHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 319 ~ammL-~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
++||| +|||+ .++|++|++||.+|+++|.+|+||++.++|. +.+||+||+|+|+++|+
T Consensus 364 ~amML~~hlg~-------~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~g~-----~~~~T~e~~daV~~~l~ 422 (435)
T 1tyo_A 364 ASLLIGEFMGW-------REVKSIVEYAIRKAVQSKKVTQDLARHMPGV-----QPLRTSEYTETLIAYID 422 (435)
T ss_dssp HHHHHHTTSCC-------HHHHHHHHHHHHHHHHTTCCBHHHHTTSTTC-----CCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCccccccCCCC-----CCcCHHHHHHHHHHHHh
Confidence 99999 99986 7899999999999999999999998433341 35899999999999994
No 20
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.6e-95 Score=737.84 Aligned_cols=345 Identities=22% Similarity=0.225 Sum_probs=292.1
Q ss_pred HHHHHHHHHhcC----CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcch
Q 016110 5 FWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNG 80 (395)
Q Consensus 5 ~~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~ 80 (395)
|+.+.++.|.+. +++|+|+++++|+++++++|+++|++++++|++++++||||+++|... +++|+|+
T Consensus 42 V~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~~---------~~~s~~l 112 (412)
T 2iv0_A 42 VVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGG---------GYRSLNV 112 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSS---------SSSHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCCc---------cccChhH
Confidence 455555555554 789999999999999999999999999999999999999999999643 5789999
Q ss_pred hHhhhcCceEEeeceec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceee-eeecCCCCccchhhhccccC
Q 016110 81 TIRNILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKL-VFVPEGKDEKTELEVYNFTG 157 (395)
Q Consensus 81 ~LRk~ldlya~~RPi~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~~~~ 157 (395)
+|||.||||+|+||+++ +++| |+++..++|+|||||||||+|+|.++....++..++ .|.++ +.. ..+
T Consensus 113 ~LR~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~------~~~-~~~-- 183 (412)
T 2iv0_A 113 TIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKN------EFG-VTI-- 183 (412)
T ss_dssp HHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHHH------HHC-CCC--
T ss_pred HHHHHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccchhhcccc------ccc-ccC--
Confidence 99999999999999985 6776 444323799999999999999998764211100000 00000 000 001
Q ss_pred CcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCcc-------------
Q 016110 158 EGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF------------- 222 (395)
Q Consensus 158 ~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~------------- 222 (395)
.++++++ +++|+++++||+|+||+||++|++ |||+|||+|||+.|+|+|+++|+|||+++||+.+
T Consensus 184 ~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~ 263 (412)
T 2iv0_A 184 REDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGK 263 (412)
T ss_dssp CTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHHHHHHHHTTC
T ss_pred CCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhCCCccccccchhhhcccc
Confidence 1357777 999999999999999999999965 6999999999999999999999999844999633
Q ss_pred -ccCCeEEceeeHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCccccccc
Q 016110 223 -EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 300 (395)
Q Consensus 223 -~~~~I~~~~~~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~ 300 (395)
++++|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+. .+||||+|||||
T Consensus 264 ~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsanig~~--~a~fEp~HGSAP---- 337 (412)
T 2iv0_A 264 QPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDG--IGVFEPVHGSAP---- 337 (412)
T ss_dssp CCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEETT--EEEEEESSCCCS----
T ss_pred ccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceEEECCC--ceEEeCCCCChh----
Confidence 23349999999999999999999999 9999999999999999999999999999999976 589999999999
Q ss_pred ccccCCCcccChhHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHH
Q 016110 301 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFI 380 (395)
Q Consensus 301 ~dIAGk~i~ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~ 380 (395)
||||||+ |||+|+|||++|||+|||+ .++|++|++||.+|+++|++|+||+..+ |. +.++|+||+
T Consensus 338 -diAGk~i-ANP~A~IlS~amML~~lg~-------~~~A~~Ie~Av~~~l~~g~~T~Dl~~~~-G~-----~~~~T~e~~ 402 (412)
T 2iv0_A 338 -KYAGQNK-VNPTAEILTGALMFEYIGW-------KDASEMIKKAVEMTISSGIVTYDIHRHM-GG-----TKVGTREFA 402 (412)
T ss_dssp -TTTTSSC-SCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHTTEECHHHHHHH-CS-----EECCHHHHH
T ss_pred -hcCCCcc-cCcHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHcCCccccccccc-CC-----CCcCHHHHH
Confidence 9999999 9999999999999999996 7899999999999999999999997322 31 368999999
Q ss_pred HHHHHHHH
Q 016110 381 DAVADDLR 388 (395)
Q Consensus 381 daV~~~l~ 388 (395)
|+|+++|+
T Consensus 403 daV~~~l~ 410 (412)
T 2iv0_A 403 EAVVENLQ 410 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999996
No 21
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-95 Score=736.13 Aligned_cols=320 Identities=17% Similarity=0.174 Sum_probs=278.0
Q ss_pred CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhhhcCceEEeecee
Q 016110 17 FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII 96 (395)
Q Consensus 17 ~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk~ldlya~~RPi~ 96 (395)
+++|+|+++++|+++++++|++||++++++|+++|++||||+++|.+...+. .. ...++|+.|||+||||+|+||++
T Consensus 73 ~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~~~~~~--~~-~p~~~ll~LRk~ldLyaNlRP~k 149 (405)
T 3r8w_A 73 GVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKWDNNEK--HL-RPEKGLLQIRAALKVFANLRPAT 149 (405)
T ss_dssp TCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTSCG--GG-SHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCccCCcc--cc-CcccchHHHHHHhCCeEEEEEee
Confidence 6899999999999999999999999999999999999999999986431111 00 11245899999999999999997
Q ss_pred c-cCCC---CCCCC--CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCH
Q 016110 97 C-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTD 169 (395)
Q Consensus 97 ~-~~~~---~l~~~--~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr 169 (395)
. ++++ |+++. .++|+|||||||||+|+|.++..... + ...+++++ ++||+
T Consensus 150 ~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~---------~--------------~~~~~a~~~~~~Tr 206 (405)
T 3r8w_A 150 VLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTN---------E--------------NGEEVGFNTEVYAA 206 (405)
T ss_dssp CCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEEC---------S--------------SSCEEEEEEEEEEH
T ss_pred ccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccC---------C--------------CCceEEEEEEEecH
Confidence 5 4552 45432 37999999999999999987643110 0 01457777 99999
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHHHhCCCcc-
Q 016110 170 ESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 248 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~lv~~P~~F- 248 (395)
+++|||+|+|||||++|++|||+|||+|||+. +|||+++|+||+ ++|| +|+++|++||+||||||++|++|
T Consensus 207 ~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~-sglf~~~~~eva-~eYP------dV~~~~~~VD~~amqLV~~P~~FD 278 (405)
T 3r8w_A 207 HEIDRIARVAFETARKRRGKLCSVDKANVLEA-SILWRKRVTALA-SEYP------DVELSHMYVDNAAMQLVRDPKQFD 278 (405)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTCHH-HHHHHHHHHHHG-GGST------TSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECchhhcc-ccHHHHHHHHHH-hHCC------CCeEEeeeHHHHHHHHHhChhhCc
Confidence 99999999999999998889999999999984 599999999996 8999 89999999999999999999999
Q ss_pred EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHH-hc
Q 016110 249 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH-RA 327 (395)
Q Consensus 249 Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~-lg 327 (395)
||||+|||||||||++|+++|||||+||+|||+++ ++||||+||||| ||||||+ |||+|+|||++|||+| ||
T Consensus 279 ViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGSAP-----DIAGk~i-ANP~A~IlS~amML~~slg 351 (405)
T 3r8w_A 279 TIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG-PGLFEPIHGSAP-----DIAGQDK-ANPLATILSAAMLLKYGLG 351 (405)
T ss_dssp EEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSS-CCEEEESSCCCG-----GGTTTTC-CCCHHHHHHHHHHHHHTTC
T ss_pred EEeecchhhHHHHHHHHHhcCcccccceeeecCCC-CeEEecCCCChh-----hhCCCCC-CCcHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999886 589999999999 9999999 9999999999999999 98
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhcCCCcccc--hhhhcCCcCCcccccCHHHHHHHHHHHHHHHhcc
Q 016110 328 KLDNNARLLDFTEKLEAACIGTVESGKMTKDL--ALIIHGSKMTREHYLNTEEFIDAVADDLRARLSG 393 (395)
Q Consensus 328 ~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl--~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~~ 393 (395)
+ .++|++|++||.+|+++|++|+|| | |. +.++|+||+|+|+++|++.+..
T Consensus 352 ~-------~~~A~~Ie~AV~~~l~~G~~T~Dl~~g----G~-----~~~~T~e~~~aV~~~l~~~~~~ 403 (405)
T 3r8w_A 352 E-------EKAAKRIEDAVLVALNNGFRTGDIYSA----GT-----KLVGCKEMGEEVLKSVDSQVPA 403 (405)
T ss_dssp C-------TTHHHHHHHHHHHHHHTTEECGGGCCT----TS-----EECCHHHHHHHHHHHHC-----
T ss_pred c-------HHHHHHHHHHHHHHHHcCCcCccccCC----CC-----cccCHHHHHHHHHHHHHHHhcc
Confidence 5 579999999999999999999999 5 51 2399999999999999877754
No 22
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=1.9e-95 Score=725.88 Aligned_cols=310 Identities=23% Similarity=0.259 Sum_probs=283.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+....++.+.+.+++|+|+++++|+++ +++|+++|++++++|++++++||||+++|.+. +++|+|++||+
T Consensus 36 v~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~---------~~~s~~l~lR~ 105 (354)
T 3blx_B 36 ISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIGK---------GHRSLNLTLRK 105 (354)
T ss_dssp HHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC-------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCCc---------cccCchHHHHH
Confidence 567778888888999999999999999 99999999999999999999999999999642 57899999999
Q ss_pred hcCceEEeeceeccCCCCCCCCC-CCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEE
Q 016110 85 ILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 163 (395)
Q Consensus 85 ~ldlya~~RPi~~~~~~~l~~~~-~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 163 (395)
.||||+|+||++ .+|++.+.+ ++|+|||||||||+|+|.++.. .+++++
T Consensus 106 ~ldlyan~RP~~--~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~----------------------------~~~~a~ 155 (354)
T 3blx_B 106 TFGLFANVRPAK--SIEGFKTTYENVDLVLIRENTEGEYSGIEHIV----------------------------CPGVVQ 155 (354)
T ss_dssp HHTEEEEEEEEE--CCTTCCCSSCSCEEEEEEECSSEEEEEEEEEC----------------------------STTEEE
T ss_pred HcCCEEEEEEec--ccCCCCCCCCCccEEEEecCcCCcccCCcccc----------------------------cCCEEE
Confidence 999999999986 345444443 6999999999999999976531 035777
Q ss_pred E-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHH
Q 016110 164 S-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYA 241 (395)
Q Consensus 164 ~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~l 241 (395)
+ ++||++++|||+|+||+||++| ++|||+|||+|||+.++|+|+++|+||| ++|| +|+++|++||+|+|||
T Consensus 156 ~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva-~eyp------dI~~~~~~vD~~~m~l 228 (354)
T 3blx_B 156 SIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELS-KEYP------DLTLETELIDNSVLKV 228 (354)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHG-GGCT------TSEEEEEEHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHH-HHCC------CceEEEEEHHHHHHHH
Confidence 7 9999999999999999999999 5679999999999999999999999997 7999 8999999999999999
Q ss_pred HhCCCcc---EEEccCccccccchhhhhh-cCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHH
Q 016110 242 LKSEGGY---VWACKNYDGDVQSDFLAQG-FGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIF 317 (395)
Q Consensus 242 v~~P~~F---Viv~~NlfGDILSDl~a~l-~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~Il 317 (395)
|++|++| ||||+|||||||||++|++ +|||||+||+|||+++ +||||+||||| ||||||+ |||+|+||
T Consensus 229 v~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~--a~fEp~HGSAP-----diAGk~i-ANP~A~Il 300 (354)
T 3blx_B 229 VTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKI--SIFEAVHGSAP-----DIAGQDK-ANPTALLL 300 (354)
T ss_dssp HHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSC--EEEEECSCCCG-----GGTTTTC-CCTHHHHH
T ss_pred hhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCc--eEEecCCCChh-----hhcCCCc-cCcHHHHH
Confidence 9999999 9999999999999999999 9999999999999985 89999999999 9999999 99999999
Q ss_pred HHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC--CCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 318 AWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG--KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 318 S~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G--~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|++|||+|||+ .++|++|++||.+|+++| ++|+||| | .++|+||+|+|+++|
T Consensus 301 S~ammL~~lg~-------~~~A~~Ie~Av~~~l~~g~~~~T~Dlg----G-------~~~T~e~~dav~~~l 354 (354)
T 3blx_B 301 SSVMMLNHMGL-------TNHADQIQNAVLSTIASGPENRTGDLA----G-------TATTSSFTEAVIKRL 354 (354)
T ss_dssp HHHHHHHHHTC-------HHHHHHHHHTHHHHHTSSTTSSCGGGT----C-------CCCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCCccCCCcC----C-------CCCHHHHHHHHHhhC
Confidence 99999999985 789999999999999999 8999997 6 689999999999864
No 23
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=3.8e-95 Score=738.75 Aligned_cols=351 Identities=21% Similarity=0.240 Sum_probs=291.5
Q ss_pred HHHHHHHHHHhcC-------CCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCC
Q 016110 4 VFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWK 76 (395)
Q Consensus 4 ~~~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~ 76 (395)
-||.+.++.+.+. +++|+|+++++|+++++++|+++|++++++|++++++||||+++|... +|+
T Consensus 33 EI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP~~~---------~~~ 103 (423)
T 1hqs_A 33 DIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVGG---------GIR 103 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSS---------SSC
T ss_pred HHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCc---------CcC
Confidence 4566666554433 489999999999999999999999999999999999999999999643 589
Q ss_pred CcchhHhhhcCceEEeeceec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhcc
Q 016110 77 SPNGTIRNILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYN 154 (395)
Q Consensus 77 s~~~~LRk~ldlya~~RPi~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~ 154 (395)
|+|++||+.||||+|+||+++ ++++ |++...++|+|||||||||+|+|.++.. +.+..+..+... +. ........
T Consensus 104 s~nl~LRk~LdlyanvRPv~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~-g~~~~~~v~~~~-~~-~~~~~~~~ 180 (423)
T 1hqs_A 104 SLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAK-GSEEVQKLISFL-QN-ELNVNKIR 180 (423)
T ss_dssp CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECT-TCHHHHHHHHHH-HH-HSCCCCCS
T ss_pred ChhHHHHHHcCCEEEEEEEeccCCCCCCCCCCCCCcEEEEecCCCCeeccccccc-CCccccceeccc-cc-cccccccc
Confidence 999999999999999999975 5665 4443347999999999999999987641 111000000000 00 00000000
Q ss_pred ccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccCcc----------
Q 016110 155 FTGEGGVALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF---------- 222 (395)
Q Consensus 155 ~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~---------- 222 (395)
+ .++++++ +++|+++++||+|+||+||++| +++||+|||+|||+.|+|+|+++|+|||+++||+..
T Consensus 181 ~--~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~ 258 (423)
T 1hqs_A 181 F--PETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIA 258 (423)
T ss_dssp C--GGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHHHH
T ss_pred c--CCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccchhhhcccc
Confidence 1 1467888 9999999999999999999998 457999999999999999999999999844999521
Q ss_pred ----------------ccCCeEEceeeHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCC-CCc
Q 016110 223 ----------------EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP-DGK 284 (395)
Q Consensus 223 ----------------~~~~I~~~~~~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~-~~~ 284 (395)
++++|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||+ ++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl~pSanigp~~~- 337 (423)
T 1hqs_A 259 EEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETG- 337 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTC-
T ss_pred ccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHHHHhhcCCcccCccceecCCCC-
Confidence 34459999999999999999999999 999999999999999999999999999999994 33
Q ss_pred ceEEecccCcccccccccccCCCcccChhHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhc
Q 016110 285 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIH 364 (395)
Q Consensus 285 ~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~ 364 (395)
.+||||+||||| ||||||+ |||+|+|||++|||+|||+ .++|++|++||.+|+++|++|+||++.++
T Consensus 338 ~alfEp~HGSAP-----diAGk~i-ANP~A~IlS~amML~hlg~-------~~~A~~Ie~Av~~~l~~g~~T~Dl~g~~~ 404 (423)
T 1hqs_A 338 HAIFEATHGTAP-----KYAGLDK-VNPSSVILSGVLLLEHLGW-------NEAADLVIKSMEKTIASKVVTYDFARLMD 404 (423)
T ss_dssp CEEEEESCCCCG-----GGTTTTC-SCCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHTTEECHHHHTTSS
T ss_pred ceEEecCCCChh-----hhCCCCC-cCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcccccccccC
Confidence 589999999999 9999999 9999999999999999996 78999999999999999999999984322
Q ss_pred CCcCCcccccCHHHHHHHHHHHH
Q 016110 365 GSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 365 G~~~~~~~~~sT~e~~daV~~~l 387 (395)
|. +.++|+||+|+|+++|
T Consensus 405 g~-----~~~~T~e~~daV~~~l 422 (423)
T 1hqs_A 405 GA-----TEVKCSEFGEELIKNM 422 (423)
T ss_dssp SC-----EECCHHHHHHHHHHTC
T ss_pred CC-----CCcCHHHHHHHHHHhh
Confidence 31 2589999999999876
No 24
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=4.1e-95 Score=722.25 Aligned_cols=310 Identities=17% Similarity=0.185 Sum_probs=282.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
++.+.++.+.+.+++|+|+++++|+ ++|+++|++++++|++++++||||+++|... ++++|+|+.|||
T Consensus 32 v~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~--------~~~~s~~l~lR~ 99 (349)
T 3blx_A 32 ITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPADQ--------TGHGSLNVALRK 99 (349)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHHH--------HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCCC--------CCccCchHHHHH
Confidence 5678888888889999999999998 7999999999999999999999999998431 257789999999
Q ss_pred hcCceEEeeceeccCCCCCCCCC-CCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceEE
Q 016110 85 ILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 163 (395)
Q Consensus 85 ~ldlya~~RPi~~~~~~~l~~~~-~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 163 (395)
+||||+|+||++ .+|++.+.. ++|+|||||||||+|+|.++.. ..++++
T Consensus 100 ~ldlyan~RP~~--~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~----------------------------~~gva~ 149 (349)
T 3blx_A 100 QLDIYANVALFK--SLKGVKTRIPDIDLIVIRENTEGEFSGLEHES----------------------------VPGVVE 149 (349)
T ss_dssp TSCEEEEEEEEE--CCTTCCCSSCSCEEEEEEECSSGGGGCEEEEC----------------------------STTEEE
T ss_pred HcCCEEEEEEEe--ccCCCCCCCCCcCEEEEecCCCCcEeCCceec----------------------------cCCeEE
Confidence 999999999986 345544443 6999999999999999976531 034777
Q ss_pred E-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHH
Q 016110 164 S-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYA 241 (395)
Q Consensus 164 ~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~l 241 (395)
+ +++|+++++||+|+||+||++| ++|||+|||+|||+.|+|+|+++|+|||+++|| +|+++|++||+|||||
T Consensus 150 ~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp------~i~~~~~~vD~~~~ql 223 (349)
T 3blx_A 150 SLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYP------DIDVSSIIVDNASMQA 223 (349)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCT------TSEEEEEEHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCC------CeeEEEeeHHHHHHHH
Confidence 7 9999999999999999999999 457999999999999999999999999757999 8999999999999999
Q ss_pred HhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEeccc-CcccccccccccCCCcccChhHHHHHH
Q 016110 242 LKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH-GTVTRHYRVHQKGGETSTNSIASIFAW 319 (395)
Q Consensus 242 v~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~H-GSAP~~~~~dIAGk~i~ANP~a~IlS~ 319 (395)
|++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+| |||| ||||||+ |||+|+|||+
T Consensus 224 v~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEpvH~GSAP-----diAGk~i-ANP~A~IlS~ 295 (349)
T 3blx_A 224 VAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDY--AVFEPGSRHVGL-----DIKGQNV-ANPTAMILSS 295 (349)
T ss_dssp HHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSC--EEECCTTTTSCC-------CCTTC-SCCHHHHHHH
T ss_pred hhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCc--eeEcCCCCCchh-----hhcCCCC-CCcHHHHHHH
Confidence 9999999 99999999999999999999999999999999985 8999999 9999 9999999 9999999999
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
+|||+|||+ .++|++|++||.+|+++| ++|+||| | .++|+||+|+|+++|+
T Consensus 296 ammL~~lg~-------~~~A~~Ie~Av~~~l~~G~~~T~Dlg----g-------~~~T~e~~daI~~~l~ 347 (349)
T 3blx_A 296 TLMLNHLGL-------NEYATRISKAVHETIAEGKHTTRDIG----G-------SSSTTDFTNEIINKLS 347 (349)
T ss_dssp HHHHHHHTC-------CHHHHHHHHHHHHHHHSSSSCBGGGT----C-------CBCHHHHHHHHHHHHH
T ss_pred HHHHHhcCc-------HHHHHHHHHHHHHHHHcCCccCCCcC----C-------CCCHHHHHHHHHHHhc
Confidence 999999995 689999999999999999 8999997 6 6899999999999995
No 25
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=1.7e-94 Score=734.62 Aligned_cols=345 Identities=22% Similarity=0.211 Sum_probs=288.3
Q ss_pred HHHHHHHhcCCCceEEEEEecchhhhhccCC--CCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 7 KSIKDKLIFPFLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~--~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+++.++.+..+++|+|+++++|+++++++|+ ++|++++++|++++++||||+++|... +++|+|++|||
T Consensus 50 ~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~tP~~~---------~~~s~~l~LRk 120 (429)
T 2d4v_A 50 DAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETPVGG---------GIRSLNVAMRQ 120 (429)
T ss_dssp HHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCCCCSSS---------SSCCHHHHHHH
T ss_pred HHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCccCCCcc---------cccChhHHHHH
Confidence 3333333333589999999999999999999 999999999999999999999999643 58899999999
Q ss_pred hcCceEEeeceec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCcee-eeeec-CCCCccchhhhccccCCcc
Q 016110 85 ILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLK-LVFVP-EGKDEKTELEVYNFTGEGG 160 (395)
Q Consensus 85 ~ldlya~~RPi~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~-~~~~~-~~g~~~~~~~~~~~~~~~~ 160 (395)
.||||+|+||+++ +++| |++...++|+|||||||||+|+|.++....++..+ +.|.+ +.+. ....+ +++
T Consensus 121 ~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~-----~~~~~--~~~ 193 (429)
T 2d4v_A 121 DLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMGV-----TKIRF--PDS 193 (429)
T ss_dssp HTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHTSCC-----CCCSC--GGG
T ss_pred HcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccceecccccccc-----ccccC--CCc
Confidence 9999999999974 6776 44432379999999999999999886421110000 00000 0000 00011 146
Q ss_pred eEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhccCcc----------------
Q 016110 161 VALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF---------------- 222 (395)
Q Consensus 161 ~a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~---------------- 222 (395)
++++ ++||+++++||+|+||+||++|++ |||+|||+|||+.|+|+|+++|+|||+++||+.+
T Consensus 194 ~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~ 273 (429)
T 2d4v_A 194 SAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAAISKAEGKA 273 (429)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHHHHHHHHCHH
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccccccccccccccccc
Confidence 7888 999999999999999999999965 6999999999999999999999999844999533
Q ss_pred ----------ccCCeEEceeeHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecc
Q 016110 223 ----------EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA 291 (395)
Q Consensus 223 ----------~~~~I~~~~~~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~ 291 (395)
.+.+|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||++ .+||||+
T Consensus 274 ~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pSanig~~--~a~fEpv 351 (429)
T 2d4v_A 274 AGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDT--HAIFEAT 351 (429)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEECSS--CEEEECS
T ss_pred ccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHHHHHHHhcCCHhhcCeeEECCC--ceEEecC
Confidence 12349999999999999999999999 9999999999999999999999999999999976 4899999
Q ss_pred cCcccccccccccCCCcccChhHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcc
Q 016110 292 HGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTRE 371 (395)
Q Consensus 292 HGSAP~~~~~dIAGk~i~ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~ 371 (395)
||||| ||||||+ |||+|+|||++|||+|||+ .++|++|++||.+|+++|.+|+||++.++|.
T Consensus 352 HGSAP-----diAGk~i-ANP~A~IlS~amML~hlg~-------~~~A~~Ie~Av~~~l~~g~~T~Dlg~~~~g~----- 413 (429)
T 2d4v_A 352 HGTAP-----DIAGQGK-ANPSSLILSAVMMLEHLGW-------GEAAQAIVAAMNATIAAGEVTGDLAALRGDV----- 413 (429)
T ss_dssp CCCCT-----TTTTTTC-CCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHTTCEEHHHHTTCTTC-----
T ss_pred CCChh-----HhcCCCC-cCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCccccccccCCCC-----
Confidence 99999 9999999 9999999999999999996 7899999999999999999999998433341
Q ss_pred cccCHHHHHHHHHHHH
Q 016110 372 HYLNTEEFIDAVADDL 387 (395)
Q Consensus 372 ~~~sT~e~~daV~~~l 387 (395)
+.++|+||+|+|+++|
T Consensus 414 ~~~~T~e~~daV~~~l 429 (429)
T 2d4v_A 414 PALSTTEFTAALIRRF 429 (429)
T ss_dssp CEECHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHhhC
Confidence 2479999999999764
No 26
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=8e-95 Score=723.75 Aligned_cols=324 Identities=21% Similarity=0.260 Sum_probs=279.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+++++.+++ +++|+|+++++|+++++++|+++|++++++|++++++||||+++|.+..++. ...++++ |+.|||
T Consensus 23 Vl~a~~~~~---~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~~~--~~~~e~~-ll~lRk 96 (358)
T 1a05_A 23 VLDAVDQAA---HLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAYPP--AKRPEQG-LLRLRK 96 (358)
T ss_dssp HHHHHHHHH---TCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTSCG--GGSHHHH-HHHHHH
T ss_pred HHHHHHHhc---CCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccCCc--cccchhh-HHHHHH
Confidence 455555553 6899999999999999999999999999999999999999999996432111 0112234 789999
Q ss_pred hcCceEEeeceec-cCCC---CCCCC--CCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCC
Q 016110 85 ILNGTVFREPIIC-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGE 158 (395)
Q Consensus 85 ~ldlya~~RPi~~-~~~~---~l~~~--~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (395)
.||||+|+||+++ ++++ |+++. .++|+|||||||||+|+|.++... . . ++
T Consensus 97 ~ldlyanvRP~~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~---------~-~-------------~~- 152 (358)
T 1a05_A 97 GLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLE---------V-I-------------DG- 152 (358)
T ss_dssp HHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEE---------E-E-------------TT-
T ss_pred HcCCEEEEEEEEecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccc---------c-C-------------CC-
Confidence 9999999999975 4441 33321 269999999999999999753210 0 0 01
Q ss_pred cceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHH
Q 016110 159 GGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDM 237 (395)
Q Consensus 159 ~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~ 237 (395)
.+++++ ++||+++++||+|+||+||++|++|||+|||+|||+ ++++|+++|+||| ++|| +|+++|++||+|
T Consensus 153 ~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~eyp------dI~~~~~~vD~~ 224 (358)
T 1a05_A 153 KRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEVA-RDYP------DVRLSHMYVDNA 224 (358)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGCT------TSEEEEEEHHHH
T ss_pred CceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HHCC------CceEEeeeHHHH
Confidence 356777 999999999999999999999988899999999999 8999999999997 8999 899999999999
Q ss_pred HHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHH
Q 016110 238 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASI 316 (395)
Q Consensus 238 a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~I 316 (395)
+||||++|++| ||||+|||||||||++|+++|||||+||+||| ++ ++||||+||||| ||||||+ |||+|+|
T Consensus 225 ~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig-~~-~~~fEpvHGSAP-----diAGk~i-ANP~A~I 296 (358)
T 1a05_A 225 AMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG-RAMYEPIHGSAP-----DIAGQDK-ANPLATI 296 (358)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC-SS-CEEEEESSCCCG-----GGTTTTC-SCCHHHH
T ss_pred HHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeC-CC-ceeeecCCCChh-----HhcCCCc-cCcHHHH
Confidence 99999999999 99999999999999999999999999999999 44 589999999999 9999999 9999999
Q ss_pred HHHHHHHHH-hcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHHH
Q 016110 317 FAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 388 (395)
Q Consensus 317 lS~ammL~~-lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~ 388 (395)
||++|||+| ||+ .++|++|++||.+|+++|++|+||++ .|. +.++|+||+|+|+++|+
T Consensus 297 lS~ammL~~~lg~-------~~~A~~Ie~Av~~~l~~g~~T~Dl~g--~g~-----~~~~T~e~~daV~~~l~ 355 (358)
T 1a05_A 297 LSVAMMLRHSLNA-------EPWAQRVEAAVQRVLDQGLRTADIAA--PGT-----PVIGTKAMGAAVVNALN 355 (358)
T ss_dssp HHHHHHHHHTSSC-------HHHHHHHHHHHHHHHHTTCCCGGGCC--TTS-----CCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCccccc--CCC-----CCcCHHHHHHHHHHHhh
Confidence 999999999 985 78999999999999999999999962 121 13899999999999985
No 27
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-94 Score=737.87 Aligned_cols=320 Identities=21% Similarity=0.221 Sum_probs=289.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccC-CCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIR 83 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G-~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LR 83 (395)
+....++.+.+.+++|+|+++++|+++++++| +++|++++++|++++++||||+++|.+. +|+|+|++||
T Consensus 34 V~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGavgtP~~~---------~~~s~~l~LR 104 (496)
T 2d1c_A 34 CVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGY---------GEKSANVTLR 104 (496)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCSSS---------SSCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCccCCCcc---------cccChHHHHH
Confidence 45566666777799999999999999999999 9999999999999999999999999742 5889999999
Q ss_pred hhcCceEEeeceec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcce
Q 016110 84 NILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 161 (395)
Q Consensus 84 k~ldlya~~RPi~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (395)
+.||||+|+||++. ++++ |+++ .++|+|||||||||+|+|.++.. + +++
T Consensus 105 k~LdLyaNlRP~k~~pgl~splk~-~~vD~vIVREnTEG~Y~G~e~~~---------------------------~-~~v 155 (496)
T 2d1c_A 105 KLFETYANVRPVREFPNVPTPYAG-RGIDLVVVRENVEDLYAGIEHMQ---------------------------T-PSV 155 (496)
T ss_dssp HHTTCCEEEEEEECBTTBCCTTTT-SCCEEEEEEECSSBGGGCCEEEE---------------------------E-TTE
T ss_pred HHhCCEEEEEEEeecCCCCccccC-CCccEEEEeeCcCceEeceeEec---------------------------C-CCe
Confidence 99999999999864 4554 3331 37999999999999999976532 0 357
Q ss_pred EEE-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHH
Q 016110 162 ALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 239 (395)
Q Consensus 162 a~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~ 239 (395)
+++ ++||++++|||+|+||+||++| ++|||+|||+|||+.++|+|+++|+||+ ++|| +|+++|++||+|+|
T Consensus 156 a~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa-~eYP------dI~~e~~~VD~~am 228 (496)
T 2d1c_A 156 AQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVA-QEYP------DIEAVHIIVDNAAH 228 (496)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHH-HHCC------CceEEEEeHHHHHH
Confidence 888 9999999999999999999999 5689999999999999999999999997 8999 89999999999999
Q ss_pred HHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccChhHHHHH
Q 016110 240 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFA 318 (395)
Q Consensus 240 ~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS 318 (395)
|||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+||||| ||||||+ |||+|+|||
T Consensus 229 qLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~--a~FEpvHGSAP-----DIAGk~i-ANP~A~IlS 300 (496)
T 2d1c_A 229 QLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEV--AIFEAVHGSAP-----KYAGKNV-INPTAVLLS 300 (496)
T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSC--EEEEESSCCCT-----TTTTSSC-CCCHHHHHH
T ss_pred HHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCC--ceeeCCCCchh-----hhcCCCc-cCcHHHHHH
Confidence 999999999 99999999999999999999999999999999985 89999999999 9999999 999999999
Q ss_pred HHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHHhc
Q 016110 319 WSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 392 (395)
Q Consensus 319 ~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~l~ 392 (395)
++|||+|||+ .++|++|++||.+|+++| ++|+||| |. .+.++|+||+|+|+++|++.+.
T Consensus 301 aamML~hlG~-------~~~A~~Ie~AV~~vl~~G~~~T~DLg----g~----~~~~sT~e~~daV~~~L~~~~~ 360 (496)
T 2d1c_A 301 AVMMLRYLEE-------FATADLIENALLYTLEEGRVLTGDVV----GY----DRGAKTTEYTEAIIQNLGKTPR 360 (496)
T ss_dssp HHHHHHHTTC-------HHHHHHHHHHHHHHHHHTSSCBHHHH----CT----TTCBCHHHHHHHHHHTTTCCCS
T ss_pred HHHHHHHCCC-------HHHHHHHHHHHHHHHHcCCeeccccC----CC----CCCcCHHHHHHHHHHHHhhhhh
Confidence 9999999996 789999999999999999 9999998 41 0257999999999999976553
No 28
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=3.7e-94 Score=713.41 Aligned_cols=317 Identities=17% Similarity=0.161 Sum_probs=277.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEecchhhhhccCCCCCHHHHHHHHcCCeeeecCCCCCcchhhHHHHhhhcCCCcchhHhh
Q 016110 5 FWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRN 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~~~~~s~~~~LRk 84 (395)
+..+.++.+.+...+|+|+++++|+++++++|+++|++++++|+++|++||||+++|..++ . . +++|+|++|||
T Consensus 16 v~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~--~--~--~~~s~~l~lR~ 89 (337)
T 1w0d_A 16 VTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS--G--V--LERGLLLRLRF 89 (337)
T ss_dssp HHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT--T--H--HHHHTHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCC--c--c--cccchHHHHHH
Confidence 3455555555554469999999999999999999999999999999999999999995321 0 0 25688999999
Q ss_pred hcCceEEeeceec-cCCC-CCCCCCCCCEEEEeccCCCccccccceecCCCceeeeeecCCCCccchhhhccccCCcceE
Q 016110 85 ILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 162 (395)
Q Consensus 85 ~ldlya~~RPi~~-~~~~-~l~~~~~~divivREnteg~Y~g~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a 162 (395)
.||||+|+||++. ++++ |+++..++|+|||||||||+|+|.++... . |. .++++
T Consensus 90 ~ldlyan~RP~~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~-~-----------g~------------~~~~a 145 (337)
T 1w0d_A 90 ELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIR-V-----------GT------------PNEVA 145 (337)
T ss_dssp HTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEES-T-----------TS------------TTCEE
T ss_pred HcCCEEEEEEeecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceec-C-----------CC------------CCCeE
Confidence 9999999999864 4444 33321129999999999999999876431 1 10 14578
Q ss_pred EE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEceeeHHHHHHHH
Q 016110 163 LS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYA 241 (395)
Q Consensus 163 ~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~a~~l 241 (395)
++ ++||+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+||| ++|| +|+++|++||+|||||
T Consensus 146 ~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva-~eyp------~i~~~~~~vD~~~mql 218 (337)
T 1w0d_A 146 TEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVG-ECYP------DVEVAYQHVDAATIHM 218 (337)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHH-HHCC------ceEEEEEEHHHHHHHH
Confidence 87 99999999999999999999998889999999999999999999999997 7999 8999999999999999
Q ss_pred HhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCc-ceEEecccCcccccccccccCCCcccChhHHHHHH
Q 016110 242 LKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW 319 (395)
Q Consensus 242 v~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~-~a~FEp~HGSAP~~~~~dIAGk~i~ANP~a~IlS~ 319 (395)
|++|++| ||||+|||||||||++|+++|||||+||+|||+++. ++||||+||||| ||||||+ |||+|+|||+
T Consensus 219 v~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAP-----diAGk~i-ANP~A~IlS~ 292 (337)
T 1w0d_A 219 ITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAP-----DIAGQGI-ADPTAAIMSV 292 (337)
T ss_dssp HHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCG-----GGTTSSC-SCCHHHHHHH
T ss_pred hhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChh-----hhCCCCC-cCCHHHHHHH
Confidence 9999999 999999999999999999999999999999999652 589999999999 9999999 9999999999
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCcccchhhhcCCcCCcccccCHHHHHHHHHHHH
Q 016110 320 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 387 (395)
Q Consensus 320 ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l 387 (395)
+|||+|||+ .++|++|++||.+|+++| | |. .+||+||+|+|+++|
T Consensus 293 ammL~~lg~-------~~~A~~Ie~Av~~~l~~g------g----g~------~~~T~e~~~av~~~l 337 (337)
T 1w0d_A 293 ALLLSHLGE-------HDAAARVDRAVEAHLATR------G----SE------RLATSDVGERIAAAL 337 (337)
T ss_dssp HHHHHHTTC-------HHHHHHHHHHHHHHHHHC------T----TC------CCCHHHHHHHHHHTC
T ss_pred HHHHHHCCC-------HHHHHHHHHHHHHHHHcC------C----CC------CcCHHHHHHHHHhhC
Confidence 999999985 789999999999999998 5 51 579999999999864
No 29
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=96.22 E-value=0.13 Score=53.67 Aligned_cols=185 Identities=15% Similarity=0.143 Sum_probs=122.1
Q ss_pred cceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEcee-eHHHH
Q 016110 159 GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDM 237 (395)
Q Consensus 159 ~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~-~VDa~ 237 (395)
.+++..+-.-..-++-+++.|.++||..+-+...---.|-- .|.-..+-+++.- ++|- -.|+.++-+ .++++
T Consensus 453 GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra--HDa~lI~kV~~yL-~~hd----t~GLdi~Im~p~~A~ 525 (741)
T 1itw_A 453 GDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPARA--HDAQVIAKVERYL-KDYD----TSGLDIRILSPVEAT 525 (741)
T ss_dssp TCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTSH--HHHHHHHHHHHHH-TTSC----CTTCCEEEECHHHHH
T ss_pred CcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc--cHHHHHHHHHHHH-HhcC----CCCCceEeeCHHHHH
Confidence 34665444456778899999999999998774443333322 3443333333332 3331 225566655 45665
Q ss_pred HHHH--HhCCCccEEEccCccccccchhhhhh--cCCcccccccccCCCCcceEEec-ccCcccccccccc-cCCCcccC
Q 016110 238 VAYA--LKSEGGYVWACKNYDGDVQSDFLAQG--FGSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGETSTN 311 (395)
Q Consensus 238 a~~l--v~~P~~FViv~~NlfGDILSDl~a~l--~GglGlapSanig~~~~~a~FEp-~HGSAP~~~~~dI-AGk~i~AN 311 (395)
-.-| +++-..-+=||.|..=|+|+||..-| .-|-=|..=.=+=..+ +|||. +.||||++..+=+ -|.=. =+
T Consensus 526 ~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhLR-WD 602 (741)
T 1itw_A 526 RFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGG--GLFETGAGGSAPKHVQQFLEEGYLR-WD 602 (741)
T ss_dssp HHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSC--EEEESCSSCCCHHHHHHHHHHSCCC-CC
T ss_pred HHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCccc-hh
Confidence 4333 34444448899999999999999844 3333333211121223 79999 7899998763311 34445 78
Q ss_pred hhHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC
Q 016110 312 SIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 353 (395)
Q Consensus 312 P~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G 353 (395)
.+|-+|+.+--|+||+.-.+|....-.|+.|..|..+.|+++
T Consensus 603 SLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~ 644 (741)
T 1itw_A 603 SLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNN 644 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999988888778888999999999999775
No 30
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=96.15 E-value=0.13 Score=53.63 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=121.4
Q ss_pred ceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCccccCCeEEcee-eHHHHH
Q 016110 160 GVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMV 238 (395)
Q Consensus 160 ~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~~~yp~~~~~~~I~~~~~-~VDa~a 238 (395)
+++..+-.-..-++-+++.|.++||..+-+...---.|-- .|.-..+-+++.- ++|- -.|+.++-+ .++++-
T Consensus 450 DIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra--HDa~lI~kV~~yL-~~hd----t~GLdi~Im~p~~A~~ 522 (738)
T 2b0t_A 450 DIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA--HDRNLASLVEKYL-ADHD----TEGLDIQILSPVEATQ 522 (738)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH--HHHHHHHHHHHHH-TTSC----CTTCCEEEECHHHHHH
T ss_pred cchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc--cHHHHHHHHHHHH-HhcC----CCCCceEeeCHHHHHH
Confidence 4555444456778899999999999998774443333322 3443333333332 3331 225566655 456654
Q ss_pred HHH--HhCCCccEEEccCccccccchhhhhh--cCCcccccccccCCCCcceEEec-ccCcccccccccc-cCCCcccCh
Q 016110 239 AYA--LKSEGGYVWACKNYDGDVQSDFLAQG--FGSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGETSTNS 312 (395)
Q Consensus 239 ~~l--v~~P~~FViv~~NlfGDILSDl~a~l--~GglGlapSanig~~~~~a~FEp-~HGSAP~~~~~dI-AGk~i~ANP 312 (395)
.-| +++-..-+=||.|..=|+|+||..-| .-|-=|..=.=+=..+ +|||. +.||||++..+=+ -|.=. =+.
T Consensus 523 ~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhLR-WDS 599 (738)
T 2b0t_A 523 LSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGG--GLFETGAGGSAPKHVQQVQEENHLR-WDS 599 (738)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSC--EEEECCSSCCCHHHHHHHHHHSCCC-CCC
T ss_pred HHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCccc-hhh
Confidence 333 34444448899999999999999844 3333333211121223 79999 7899998763311 34445 789
Q ss_pred hHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcC
Q 016110 313 IASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 353 (395)
Q Consensus 313 ~a~IlS~ammL~~lg~~~~~~~l~~~A~~i~~Av~~vl~~G 353 (395)
+|-+|+.+--|+||+.-.+|....-.|+.|..|..+.|+++
T Consensus 600 LGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~ 640 (738)
T 2b0t_A 600 LGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEE 640 (738)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999987777777888999999999999775
No 31
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=93.08 E-value=0.054 Score=53.29 Aligned_cols=138 Identities=14% Similarity=0.030 Sum_probs=81.9
Q ss_pred eeeCHHHHHHHHHHHHHHHHh-CC--CCEEEEeCCCccccccHHH-HH-------HHHHHHHhhccCccccCCeEE-cee
Q 016110 165 MYNTDESIRAFAEASMNTAYQ-KK--WPLYLSTKNTILKKYDGRF-KD-------IFQEVYEANWKSKFEAAGIWY-EHR 232 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~-r~--~~Vt~v~KaNvl~~t~glf-~~-------~~~eva~~~yp~~~~~~~I~~-~~~ 232 (395)
..+|.+.+.+.++...+--++ -+ ++-..|-==|=-.--+|+| +| ..++. ++ .+|.+ -..
T Consensus 173 ~~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~~~-r~--------~Gi~~~GP~ 243 (328)
T 1yxo_A 173 DAISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERL-RG--------EGLDLIGPL 243 (328)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHHHH-HT--------TTCEEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHH-HH--------CCCceeCCC
Confidence 457999999988888875555 23 2223332233322223443 11 22222 11 26766 467
Q ss_pred eHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccC
Q 016110 233 LIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 311 (395)
Q Consensus 233 ~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~AN 311 (395)
--|.+-.+-.+ ++| ++|| || =|++-.-.=-+|+--+.|+--.--.----|-||||- ||||||+ ||
T Consensus 244 paDT~F~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAf-----DIAGkG~-A~ 309 (328)
T 1yxo_A 244 PADTLFTPKHL--EHCDAVLA--MY----HDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTAL-----DLAGSGR-ID 309 (328)
T ss_dssp CHHHHTSHHHH--TTCSEEEE--SS----HHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCG-----GGTTTCC-CC
T ss_pred Cchhhcccccc--cCCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecCCCCccc-----cccCCCC-CC
Confidence 78888655443 577 5554 33 367655555566666777542110112358999999 9999999 99
Q ss_pred hhHHHHHHHHHHHH
Q 016110 312 SIASIFAWSRGLAH 325 (395)
Q Consensus 312 P~a~IlS~ammL~~ 325 (395)
|.+++-|.-+..+.
T Consensus 310 ~~Sl~~Ai~~A~~~ 323 (328)
T 1yxo_A 310 SGSLQVALETAYQM 323 (328)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887655543
No 32
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=92.99 E-value=0.053 Score=53.34 Aligned_cols=136 Identities=14% Similarity=0.059 Sum_probs=82.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHh-CC--CCEEEEeCCCccccccHHH-HHH-------HHHHHHhhccCccccCCeEE-cee
Q 016110 165 MYNTDESIRAFAEASMNTAYQ-KK--WPLYLSTKNTILKKYDGRF-KDI-------FQEVYEANWKSKFEAAGIWY-EHR 232 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~-r~--~~Vt~v~KaNvl~~t~glf-~~~-------~~eva~~~yp~~~~~~~I~~-~~~ 232 (395)
..+|.+.+.+.++...+ -++ -+ ++-..|-==|=-.--.|+| +|. .++. ++ .+|.+ -..
T Consensus 180 ~~it~e~i~~~i~~~~~-L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~-r~--------~Gi~~~GP~ 249 (330)
T 2hi1_A 180 DTLSTARVETVIGIADT-FLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDA-RA--------KGMDVYGPC 249 (330)
T ss_dssp HHCCHHHHHHHHHHHHH-HHHHTTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHHH-HT--------TTCEEEEEE
T ss_pred HhcCHHHHHHHHHHHHH-HHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHH-HH--------CCCceeCCC
Confidence 45799999999999988 433 34 2323332233222223443 222 2222 11 26776 467
Q ss_pred eHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccC
Q 016110 233 LIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 311 (395)
Q Consensus 233 ~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~AN 311 (395)
--|.+-.+-.+ ++| ++|| || =|++-.-.=-+|+--+.|+--.--.----|-||||- ||||||+ ||
T Consensus 250 paDT~F~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAf-----DIAGkG~-A~ 315 (330)
T 2hi1_A 250 PPDTVFLQAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAF-----DIAWTGK-AK 315 (330)
T ss_dssp CHHHHHHHHHT--TSCSEEEE--SS----HHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCT-----TTTTTTC-CC
T ss_pred Cchhhcccccc--ccCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecCCCCccc-----cccCCCC-CC
Confidence 78888766543 678 5555 33 377766666677777777542210122458999999 9999999 99
Q ss_pred hhHHHHHHHHHHH
Q 016110 312 SIASIFAWSRGLA 324 (395)
Q Consensus 312 P~a~IlS~ammL~ 324 (395)
|.+++-|.-+..+
T Consensus 316 ~~Sl~~Ai~~A~~ 328 (330)
T 2hi1_A 316 SESMAVSIKLAMQ 328 (330)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999988665543
No 33
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=92.99 E-value=0.051 Score=53.81 Aligned_cols=133 Identities=11% Similarity=0.005 Sum_probs=71.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CEEEEeCCCccccccHHH-HH-------HHHHHHHhhccCccccCCeEEc-ee
Q 016110 165 MYNTDESIRAFAEASMNTAYQKK--W-PLYLSTKNTILKKYDGRF-KD-------IFQEVYEANWKSKFEAAGIWYE-HR 232 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~r~--~-~Vt~v~KaNvl~~t~glf-~~-------~~~eva~~~yp~~~~~~~I~~~-~~ 232 (395)
..+|.+.+.+.++...+.-++.+ + |+-+. ==|=-...+|+| +| +.++. +++ ++.+. ..
T Consensus 195 ~~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~-GLNPHaGE~G~~G~EE~~iI~Pai~~l-~~~--------gi~v~GP~ 264 (349)
T 4aty_A 195 ARLDQRHVERAARAAVQALQLMGIAHPVVGLM-GINPHAGEGGLFGRDDIDITEPVARKL-RDD--------GMTVIGPQ 264 (349)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTC-CCCCEEEE-CSSGGGGTTTTTCSHHHHTHHHHHHHH-HHC---------CCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCceEEE-ecCCCCCccccccchHHHHHHHHHHHH-HHC--------CCeEeCCC
Confidence 45788888877777666555444 2 33222 122222223443 12 22332 121 45443 56
Q ss_pred eHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCcccC
Q 016110 233 LIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 311 (395)
Q Consensus 233 ~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~AN 311 (395)
-.|.+- .+.+| ++|+ || =|++-.-.=-++.--+.|+--.--.----|-||||- ||||||+ ||
T Consensus 265 paDt~F-----~~~~~D~vla--MY----HDQgl~p~K~l~f~~~vnitlGLp~iRtS~dHGta~-----diagkg~-a~ 327 (349)
T 4aty_A 265 GADLLL-----TNPDIDVFVA--MY----HDQGHIPVKLRAGRHSAALSIGAGVLFSSVGHGSGF-----DIAGTLL-AD 327 (349)
T ss_dssp CHHHHT-----TCTTCSEEEE--SS----HHHHHHHHHHHHTTSEEEEEESSSSEEEECCSCCCT-----TSTTTTC-CC
T ss_pred chhhhh-----ccCCCCEEEE--cc----cccchHHHHhcccCCcEEEecCCCeeEeCCCCChhh-----hhccCCC-CC
Confidence 677665 24678 6665 34 345433222344444555331100112358999999 9999999 99
Q ss_pred hhHHHHHHHHHHH
Q 016110 312 SIASIFAWSRGLA 324 (395)
Q Consensus 312 P~a~IlS~ammL~ 324 (395)
|.+++-|.-+...
T Consensus 328 ~~s~~~Ai~~a~~ 340 (349)
T 4aty_A 328 PAPLLGAIRLVTT 340 (349)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999988665543
No 34
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=92.93 E-value=0.058 Score=53.19 Aligned_cols=137 Identities=13% Similarity=-0.016 Sum_probs=82.8
Q ss_pred eeeCHHHHHHHHHHHHHHHHh-CC--C-CEEEEeCCCccccccHHH--------HHHHHHHHHhhccCccccCCeEEc-e
Q 016110 165 MYNTDESIRAFAEASMNTAYQ-KK--W-PLYLSTKNTILKKYDGRF--------KDIFQEVYEANWKSKFEAAGIWYE-H 231 (395)
Q Consensus 165 ~~~Tr~~~eRiar~AFe~A~~-r~--~-~Vt~v~KaNvl~~t~glf--------~~~~~eva~~~yp~~~~~~~I~~~-~ 231 (395)
..+|.+.+.+.++.+.+.-++ -+ + ||-+.- =|=-.-..|+| +-..++. +++ ||.+. .
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~~l-r~~--------Gi~~~GP 247 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALNTL-RQQ--------GINLIGP 247 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHHHH-HHT--------TCCEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHHHH-HHC--------CCceeCC
Confidence 457899999999988876665 34 2 554441 11111123333 3334443 222 66554 7
Q ss_pred eeHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCCccc
Q 016110 232 RLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETST 310 (395)
Q Consensus 232 ~~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~i~A 310 (395)
+--|++..+-.+ +.| ++||.+. |++-.-.=-+++--+.|+--.--.----|-||||- ||||||+ |
T Consensus 248 ~paDt~F~~~~~--~~~D~vlaMYH------DQGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-----DIAGkG~-A 313 (334)
T 3lxy_A 248 LPADTLFQPKYL--QHADAVLAMYH------DQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTAL-----ELAATGT-A 313 (334)
T ss_dssp ECHHHHTSHHHH--TTCSEEEESSH------HHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCG-----GGTTTTC-S
T ss_pred CChHHhcChhhh--ccCCEEEEccc------chhhHhHHhcccCccEEEecCCCeeeecCCCCcch-----hhccCCC-C
Confidence 778888655444 678 8888765 35444344445555666432100112358999999 9999999 9
Q ss_pred ChhHHHHHHHHHHHH
Q 016110 311 NSIASIFAWSRGLAH 325 (395)
Q Consensus 311 NP~a~IlS~ammL~~ 325 (395)
||.+++-|.-+..+.
T Consensus 314 ~~~S~~~Ai~~A~~~ 328 (334)
T 3lxy_A 314 DVGSFITALNLAIKM 328 (334)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999887665544
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=91.47 E-value=0.1 Score=52.04 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=48.0
Q ss_pred eeeHHHHHHHHHhCCCcc-EEEccCccccccchhhhhhcCCcccccccccCCCCcceEEecccCcccccccccccCCC-c
Q 016110 231 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE-T 308 (395)
Q Consensus 231 ~~~VDa~a~~lv~~P~~F-Viv~~NlfGDILSDl~a~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIAGk~-i 308 (395)
..--|.+-.+-.+ ++| ++|| || =|++-.-.=-+|+--+.|+--.--.----|-||||- |||||| +
T Consensus 281 P~paDT~F~~~~~--~~~D~vlA--MY----HDQGliplK~l~F~~gVNvTlGLP~IRTSvDHGTAf-----DIAGkG~~ 347 (367)
T 3tsn_A 281 PLVADTAFTKTGL--KNCNRLVA--MY----HDLALAPLKALYFDKSINVSLNLPIIRVSVDHGTAF-----DKAYKNAK 347 (367)
T ss_dssp CBCHHHHTSHHHH--HHCCEEEE--SS----HHHHHHHHHHHCTTTCEEEEESSSSCEEECCCCSCT-----TSCSSCCC
T ss_pred CcCchhhhccchh--cCCCEEEE--cc----ccCcchhhhhcccCccEEEecCCCeeeecCCCCcch-----hhcCCCCc
Confidence 3445655433222 456 5554 23 355544444455556666442110112348999999 999999 9
Q ss_pred ccChhHHHHHHHHHHH
Q 016110 309 STNSIASIFAWSRGLA 324 (395)
Q Consensus 309 ~ANP~a~IlS~ammL~ 324 (395)
|||.+++-|.-+..+
T Consensus 348 -Ad~~Sl~~Ai~~A~~ 362 (367)
T 3tsn_A 348 -INTKSYFEAAKFAIN 362 (367)
T ss_dssp -CCCHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHH
Confidence 999999988766554
No 36
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=69.95 E-value=0.68 Score=47.04 Aligned_cols=16 Identities=6% Similarity=-0.211 Sum_probs=15.4
Q ss_pred CCCEEEEeccCCCccc
Q 016110 108 TKPICIGRHAFGDQYR 123 (395)
Q Consensus 108 ~~divivREnteg~Y~ 123 (395)
++|++||||||||+|+
T Consensus 156 ~~D~vivREnteg~Y~ 171 (427)
T 2qfy_A 156 ATDTLIPGPGSLELVY 171 (427)
T ss_dssp CEEEEECSSEEEEEEE
T ss_pred CeeEEEeccCccceee
Confidence 6999999999999998
No 37
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=25.61 E-value=49 Score=26.32 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q 016110 169 DESIRAFAEASMNTAYQKKWPLYLST 194 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~~~Vt~v~ 194 (395)
...+++.+++|.++|++.+.+|+++|
T Consensus 15 s~~s~~al~~A~~la~~~~a~l~ll~ 40 (146)
T 3s3t_A 15 SDAAQAAFTEAVNIAQRHQANLTALY 40 (146)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34688999999999998887777765
No 38
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=24.36 E-value=54 Score=26.02 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q 016110 170 ESIRAFAEASMNTAYQKKWPLYLSTK 195 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~~~Vt~v~K 195 (395)
+.+++.+++|.++|++.+-+|+++|=
T Consensus 13 ~~s~~al~~A~~la~~~~a~l~ll~v 38 (147)
T 3hgm_A 13 KGAVKALEKGVGLQQLTGAELYILCV 38 (147)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 46889999999999988888888773
No 39
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=23.18 E-value=66 Score=26.06 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 016110 169 DESIRAFAEASMNTAYQKKWPLYLSTK 195 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~~~Vt~v~K 195 (395)
...+++.+++|.++|++.+-+|+++|=
T Consensus 27 s~~s~~al~~a~~la~~~~a~l~ll~v 53 (156)
T 3fg9_A 27 NTSSERAFRYATTLAHDYDVPLGICSV 53 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 456889999999999998888777763
No 40
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=21.51 E-value=73 Score=26.19 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q 016110 169 DESIRAFAEASMNTAYQKKWPLYLST 194 (395)
Q Consensus 169 r~~~eRiar~AFe~A~~r~~~Vt~v~ 194 (395)
...+++.+++|.++|+..+.+|+++|
T Consensus 35 s~~s~~al~~A~~la~~~~a~l~llh 60 (155)
T 3dlo_A 35 SDRAERVLRFAAEEARLRGVPVYVVH 60 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45689999999999998888888776
No 41
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=21.46 E-value=67 Score=25.37 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q 016110 170 ESIRAFAEASMNTAYQKKWPLYLST 194 (395)
Q Consensus 170 ~~~eRiar~AFe~A~~r~~~Vt~v~ 194 (395)
+.+++.+++|.++|+..+-+|+++|
T Consensus 13 ~~s~~al~~a~~la~~~~a~l~ll~ 37 (137)
T 2z08_A 13 EHARRAAEVAKAEAEAHGARLIVVH 37 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 4578899999999998888888776
No 42
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=21.22 E-value=1.1e+02 Score=32.17 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCCcccccccee-cCCCceeeeeecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 016110 118 FGDQYRATDTVI-QGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTK 195 (395)
Q Consensus 118 teg~Y~g~~~~~-~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~K 195 (395)
.+++|..+.-.. ...+++.+.+...+|... .+ .....-..+-.++ .+.+.+....+.+...+-|++.+--..+=-|
T Consensus 178 ~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~~-vL-K~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfSlHlK 255 (741)
T 1itw_A 178 NGDFYGSEKAALIGAPGSVKIELIAKDGSST-VL-KAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAKKQGVLLSVHLK 255 (741)
T ss_dssp SSSHHHHCEEEECCSSEEEEEEEEETTSCEE-EE-EEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEECBC
T ss_pred CCCccCcceeEEecCCCeEEEEEEcCCCcEE-Ee-cCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceeehhhh
Confidence 355565543322 235577777776666411 11 0001101233455 8889999999999999999887754555569
Q ss_pred CCccccccHHH----HHH-HHHHHHhhccCccccCCeEEceeeHHH
Q 016110 196 NTILKKYDGRF----KDI-FQEVYEANWKSKFEAAGIWYEHRLIDD 236 (395)
Q Consensus 196 aNvl~~t~glf----~~~-~~eva~~~yp~~~~~~~I~~~~~~VDa 236 (395)
++-||.+|... .++ +.+|. ..|.++|.+.||..+.-+-|-
T Consensus 256 ATMMKVSDPIiFGhaV~vf~kdvF-~k~~~~~~~lGvn~nnGlgdl 300 (741)
T 1itw_A 256 ATMMKVSDPIMFGQIVSEFYKDAL-TKHAEVLKQIGFDVNNGIGDL 300 (741)
T ss_dssp TTTSTTHHHHHHHHHHHHHTHHHH-HHTHHHHHHTTCCGGGCHHHH
T ss_pred hccccccCcccccchhhhhhHHHH-HHHHHHHHHcCCCcccCHHHH
Confidence 99999999863 333 55565 457777778888766554443
No 43
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=20.68 E-value=3e+02 Score=26.16 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=57.6
Q ss_pred eCHHHHHHHHHHHHHHHHh-CCC--CEEEEeCCC-cccccc--HHHHHHHHHHHHhhccCccccCCeEEc-eeeHHHHHH
Q 016110 167 NTDESIRAFAEASMNTAYQ-KKW--PLYLSTKNT-ILKKYD--GRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVA 239 (395)
Q Consensus 167 ~Tr~~~eRiar~AFe~A~~-r~~--~Vt~v~KaN-vl~~t~--glf~~~~~eva~~~yp~~~~~~~I~~~-~~~VDa~a~ 239 (395)
.|.+...+|++.+-++|++ -|. ||-+..=++ ...... ..-++.++.+ ++++| ++.++ ++-.|++..
T Consensus 178 pt~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs~ge~g~~~~~~~~~v~~A~~ll-~~~~~------~~~v~Gpl~~D~a~~ 250 (333)
T 2af4_C 178 PSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLA-QELAP------DIAIDGELQVDAAIV 250 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHH-HHHCT------TSEEEEEECHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCCcHHHHHHHHHH-hccCC------CcEEEecCcHHHhcC
Confidence 3788899999999999988 553 566554211 111111 2355665544 56788 77776 777887764
Q ss_pred HHHh---CC-----Ccc-EEEccCcc-ccccchhhh
Q 016110 240 YALK---SE-----GGY-VWACKNYD-GDVQSDFLA 265 (395)
Q Consensus 240 ~lv~---~P-----~~F-Viv~~Nlf-GDILSDl~a 265 (395)
.-+. -| +.+ |+||||+| |+|.-=+..
T Consensus 251 ~~~~~~k~~~s~~~G~aDvlV~pd~d~GNI~~K~l~ 286 (333)
T 2af4_C 251 PKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQ 286 (333)
T ss_dssp HHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCccCCcCCEEEECCchHHHHHHHHHH
Confidence 4333 23 345 99999998 555544433
No 44
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=20.39 E-value=1.2e+02 Score=23.53 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHHHHHhcC-CCcccchhhhcCCcCCcccccCHHHHHHHHHHHHHHH
Q 016110 343 EAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAR 390 (395)
Q Consensus 343 ~~Av~~vl~~G-~~T~Dl~~~~~G~~~~~~~~~sT~e~~daV~~~l~~~ 390 (395)
+++|.++|... ..|.||-.-.+. |++..+++|..+.+++.|+.+
T Consensus 21 Ee~VRryL~rkPmTT~dLl~KFK~----r~~~~~~~e~v~~~a~ILKki 65 (82)
T 1nha_A 21 EDAVRRYLTRKPMTTKDLLKKFQT----KKTGLSSEQTVNVLAQILKRL 65 (82)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHTTS----SCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHH----hcccCCCHHHHHHHHHHHHHc
Confidence 47888888776 568899543323 344679999999999988754
Done!