BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016111
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 536 bits (1381), Expect = e-153, Method: Compositional matrix adjust.
Identities = 245/392 (62%), Positives = 311/392 (79%), Gaps = 1/392 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V++ +N Q+ G ATILAIGTA P +C+YQ+DY DYYF+VT S+HMT LK+KF RIC
Sbjct: 588 MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRIC 647
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +KKRY H+TE++L+++PNI AY SL+ RQ+I+ EVPKLG+EAA KA+KEWGQ
Sbjct: 648 DKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQP 707
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHL+FC+ GV+MPGADY+L +LGL PSV+RVMLY QGCY G T +R AKD AEN
Sbjct: 708 KSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAEN 767
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS++++ TFRGPS+ L L GQALFGDG+AA+I+G++PD ++ E+PLFQ+
Sbjct: 768 NAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISI-ERPLFQL 826
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
VS AQT +P S +AG RE+GLT HL NV T++SEN+EKCL +AF P GI DWNSLF
Sbjct: 827 VSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQAFDPLGISDWNSLF 886
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++ +EAKL L ++KL ATRHVLSEYGNM V FILDE+R+KS + +
Sbjct: 887 WIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGERA 946
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRSFPFPT 392
TTGEGL+WGV+FG G G+T++TVVL S P T
Sbjct: 947 TTGEGLDWGVLFGFGPGLTIETVVLHSIPMVT 978
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 528 bits (1359), Expect = e-150, Method: Compositional matrix adjust.
Identities = 240/383 (62%), Positives = 303/383 (79%), Gaps = 1/383 (0%)
Query: 7 GKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVK 66
G ++ LAT++AIGTANPPNC YQAD+PD+YFRVTNSDH+ LKQKFKR+CE S ++
Sbjct: 3 GMATEEMKKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIE 62
Query: 67 KRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITH 126
KRY HVTE+ILK+NPNI AY+ +SL+ R + V+ V +LG+EAA KAIKEWGQ KS+ITH
Sbjct: 63 KRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITH 122
Query: 127 LIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARV 186
LI C L GVDMPGADYQLTK+L L+PSVKR M Y GCY G T +R+AKD AENN GARV
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 187 LVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQT 246
L+VCS+++ FRGPS+ +L + GQALFGDGAAA+I+GA+PD T+ E+P+F++VS AQT
Sbjct: 183 LIVCSEMTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTV-ERPIFELVSTAQT 241
Query: 247 ILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPG 306
I+P S + G E GL+ HL K V T++S NI+ CL +AF+P I DWNSLFWI PG
Sbjct: 242 IVPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPG 301
Query: 307 GPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGL 366
GPAI++Q+ AK+GL+++KL TR VL +YGNM +VFFI+DE+R+KS E G+ TTGEGL
Sbjct: 302 GPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGL 361
Query: 367 EWGVMFGIGAGVTVDTVVLRSFP 389
EWGV+FG G G+TV+TVVLRS P
Sbjct: 362 EWGVLFGFGPGITVETVVLRSVP 384
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust.
Identities = 238/383 (62%), Positives = 302/383 (78%), Gaps = 1/383 (0%)
Query: 7 GKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVK 66
G ++ LAT++AIGTANPPNC YQAD+PD+YFRVTNSDH+ LKQKFKR+CE S ++
Sbjct: 3 GMATEEMKKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIE 62
Query: 67 KRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITH 126
KRY HVTE+ILK+NPNI AY+ +SL+ R + V+ V +LG+EAA KAIKEWGQ KS+ITH
Sbjct: 63 KRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITH 122
Query: 127 LIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARV 186
LI C L GVDMPGADYQLTK+L L+PSVKR M Y GCY G T +R+AKD AENN GARV
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 187 LVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQT 246
L+VCS+++ FRGPS+ +L + GQA+ GDGAAA+I+GA+PD T+ E+P+F++VS AQT
Sbjct: 183 LIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTV-ERPIFELVSTAQT 241
Query: 247 ILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPG 306
I+P S + G E GL+ HL K V T++S NI+ CL +AF+P I DWNSLFWI PG
Sbjct: 242 IVPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPG 301
Query: 307 GPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGL 366
GPAI++Q+ AK+GL+++KL TR VL +YGNM +VFFI+DE+R+KS E G+ TTGEGL
Sbjct: 302 GPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGL 361
Query: 367 EWGVMFGIGAGVTVDTVVLRSFP 389
EWGV+FG G G+TV+TVVLRS P
Sbjct: 362 EWGVLFGFGPGITVETVVLRSVP 384
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust.
Identities = 242/387 (62%), Positives = 305/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QGC+ G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 516 bits (1329), Expect = e-147, Method: Compositional matrix adjust.
Identities = 241/384 (62%), Positives = 304/384 (79%), Gaps = 1/384 (0%)
Query: 4 VKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKS 63
V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C+KS
Sbjct: 3 VSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKS 62
Query: 64 NVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQ 123
+K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ KS+
Sbjct: 63 MIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSK 122
Query: 124 ITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG 183
ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AENN G
Sbjct: 123 ITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKG 182
Query: 184 ARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSG 243
ARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++V
Sbjct: 183 ARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWT 241
Query: 244 AQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIV 303
AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+FWI
Sbjct: 242 AQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA 301
Query: 304 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 363
QPGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G TTG
Sbjct: 302 QPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG 361
Query: 364 EGLEWGVMFGIGAGVTVDTVVLRS 387
EGLEWGV+FG G G+T++TVVLRS
Sbjct: 362 EGLEWGVLFGFGPGLTIETVVLRS 385
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 516 bits (1329), Expect = e-147, Method: Compositional matrix adjust.
Identities = 241/387 (62%), Positives = 304/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/387 (62%), Positives = 304/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/387 (62%), Positives = 304/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/384 (62%), Positives = 303/384 (78%), Gaps = 1/384 (0%)
Query: 4 VKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKS 63
V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C+KS
Sbjct: 3 VSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKS 62
Query: 64 NVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQ 123
+K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ KS+
Sbjct: 63 MIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSK 122
Query: 124 ITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG 183
ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AENN G
Sbjct: 123 ITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKG 182
Query: 184 ARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSG 243
ARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++V
Sbjct: 183 ARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWT 241
Query: 244 AQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIV 303
AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+FWI
Sbjct: 242 AQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA 301
Query: 304 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 363
PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G TTG
Sbjct: 302 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG 361
Query: 364 EGLEWGVMFGIGAGVTVDTVVLRS 387
EGLEWGV+FG G G+T++TVVLRS
Sbjct: 362 EGLEWGVLFGFGPGLTIETVVLRS 385
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/387 (62%), Positives = 303/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDAHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 513 bits (1320), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/387 (62%), Positives = 303/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDVHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/387 (62%), Positives = 303/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDLHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/387 (62%), Positives = 303/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDFHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/387 (62%), Positives = 303/387 (78%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 60
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ
Sbjct: 61 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQP 120
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AEN
Sbjct: 121 KSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAEN 180
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQAL GDGAAALI+G++P + EKP+F++
Sbjct: 181 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEI-EKPIFEM 239
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+F
Sbjct: 240 VWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF 299
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRS 386
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 239/384 (62%), Positives = 302/384 (78%), Gaps = 1/384 (0%)
Query: 4 VKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKS 63
V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C+KS
Sbjct: 2 VSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKS 61
Query: 64 NVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQ 123
+K+RY ++TE+ILK+NPN+C Y SLD+RQD++V EVP+LG+EAA KAIKEWGQ KS+
Sbjct: 62 MIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSK 121
Query: 124 ITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPG 183
ITHLI C+ GVDMPGADYQLTK+LGL P VKR M+Y QG + G T +R+AKD AENN G
Sbjct: 122 ITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKG 181
Query: 184 ARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSG 243
ARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++V
Sbjct: 182 ARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWT 240
Query: 244 AQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIV 303
AQTI P S+ + G RE GLT HL K+V +VS+NI K L EAF P GI D+NS+FWI
Sbjct: 241 AQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIA 300
Query: 304 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 363
PGGPAI++Q+E KL LK +K++ATR VLSEYG M V FILDE+R+KS + G TTG
Sbjct: 301 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMRKKSTQNGLKTTG 360
Query: 364 EGLEWGVMFGIGAGVTVDTVVLRS 387
EGLEWGV+FG G G+T++TVVLRS
Sbjct: 361 EGLEWGVLFGFGPGLTIETVVLRS 384
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust.
Identities = 236/387 (60%), Positives = 298/387 (77%), Gaps = 1/387 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + + Q+ G ATILAIGTANP NC+ Q+ YPD+YF++TNS+H T LK+KF+R+C
Sbjct: 5 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMC 64
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+KS +K+RY ++TE+ILK+NPN+C Y SLD+RQ +L EVP+LG+EAA KAIKEWGQ
Sbjct: 65 DKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQAMLAMEVPRLGKEAAVKAIKEWGQP 124
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHLI CS D+PGADYQLTK+LGL P VKRV ++ GC+ G T +R+AKD AEN
Sbjct: 125 KSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAEN 184
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVCS+++ TFRGPSD +L L GQALFGDGAAALI+G++P + EKP+F++
Sbjct: 185 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEM 243
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
V AQTI P S+ + G RE GLT HL V +VS+NI K L EAF P GI D+NS+F
Sbjct: 244 VWTAQTIAPDSEGAIDGHLREAGLTFHLKGAVPDIVSKNITKALVEAFEPLGISDYNSIF 303
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGGPAI++Q+E KL LK +K++ATR VLSEYGNM V FILDE+R+KS + G
Sbjct: 304 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 363
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRS 387
TTGEGLEWGV+FG G G+T++TVVLRS
Sbjct: 364 TTGEGLEWGVLFGFGPGLTIETVVLRS 390
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 225/388 (57%), Positives = 298/388 (76%), Gaps = 1/388 (0%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
M V + Q+ G AT+LAIGTANPPNC+ Q+ Y DYYFRVTNS+HMT LK+KF+RIC
Sbjct: 2 MVSVSGIRKVQRAEGPATVLAIGTANPPNCVDQSTYADYYFRVTNSEHMTDLKKKFQRIC 61
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
E++ +K R+ ++TE+ILK+NPN+CAY SLD+R+D+++REVP++G+EAATKAIKEWGQ
Sbjct: 62 ERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQP 121
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
S+ITHLIFC+ GV +PG DY+L +LGL+PSVKR M+Y QGC+ G T +R+AKD AEN
Sbjct: 122 MSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAEN 181
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N ARVL+VCS+ + TFRGPS+ ++ L GQALF DGAAA+IIG++P + E PLF+I
Sbjct: 182 NKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEV-ENPLFEI 240
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF 300
VS Q ++P S + G RE+GLT +L+K+V ++S+NI L +AF P GI D+NS+F
Sbjct: 241 VSTDQQLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSIF 300
Query: 301 WIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKV 360
WI PGG AI++Q+E K+ LK +K+ ATR VLS YGNM VFFI+D +R+KS E G
Sbjct: 301 WIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKSLEAGLK 360
Query: 361 TTGEGLEWGVMFGIGAGVTVDTVVLRSF 388
TTGEGL+WGV+FG G G+T++TVVLRS
Sbjct: 361 TTGEGLDWGVLFGFGPGLTIETVVLRSM 388
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 226/373 (60%), Positives = 287/373 (76%), Gaps = 1/373 (0%)
Query: 15 GLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTE 74
GLATILAIGTA PPNC+ QADY DYYFRVT S+HM LK+KFKRICEK+ +KKRY +TE
Sbjct: 20 GLATILAIGTATPPNCVAQADYADYYFRVTKSEHMVDLKEKFKRICEKTAIKKRYLALTE 79
Query: 75 DILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVG 134
D L++NP +C + SL++RQD++V VP LG+EAA KAI EWG KS+ITHLIFC+ G
Sbjct: 80 DYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAIDEWGLPKSKITHLIFCTTAG 139
Query: 135 VDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLS 194
VDMPGADYQL K+LGL+PSVKR MLY QG G T +R+AKD AENN G+RVL+VCS+++
Sbjct: 140 VDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSEIT 199
Query: 195 LGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSD 254
F GP++ +L L QALFGDGAAALI+G+ P + E+P+F+IVS QTILP ++
Sbjct: 200 AILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAV-ERPIFEIVSTDQTILPDTEKA 258
Query: 255 VAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQI 314
+ RE GLT L ++V +V++NIE ++A SP GI DWNS+FW+V PGG AI++Q+
Sbjct: 259 MKLHLREGGLTFQLHRDVPLMVAKNIENAAEKALSPLGITDWNSVFWMVHPGGRAILDQV 318
Query: 315 EAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGI 374
E KL LK+ KL A+RHVLSEYGN+ V FI+DE+R++S EGK TTGEGL+ GV+FG
Sbjct: 319 ERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGF 378
Query: 375 GAGVTVDTVVLRS 387
G G+TV+TVVLRS
Sbjct: 379 GPGMTVETVVLRS 391
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 223/383 (58%), Positives = 290/383 (75%), Gaps = 2/383 (0%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ Q+ G A+ILAIGTANPPN + Q+ YPD+YFR+T ++H T LK KFKRICE+S +K+
Sbjct: 14 RKLQRADGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQ 73
Query: 68 RYFHVTEDILKKNPNICAY-DGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITH 126
RY ++TE+ILKKNP++CA+ + SLD+RQ +L EVP+L +EAA KAI+EWGQSKS ITH
Sbjct: 74 RYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITH 133
Query: 127 LIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARV 186
LIFCS D+PGAD+++ K+LGL+PSVKRV ++ GC+ G T +RMAKD AENN GARV
Sbjct: 134 LIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARV 193
Query: 187 LVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQT 246
LV+CS+ + TFRGPS+ +L L GQALFGDGA+ALI+GA+P + EK F+IV AQT
Sbjct: 194 LVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQV-EKACFEIVWTAQT 252
Query: 247 ILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPG 306
++P S+ + G+ RE+GLT L V ++S NIE C+ EAFS F I DWN LFW+V PG
Sbjct: 253 VVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQFKISDWNKLFWVVHPG 312
Query: 307 GPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGL 366
G AI++++EAKL L KL TRHV+SEYGNM V FILD+ R+ S + G TTGEGL
Sbjct: 313 GRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGL 372
Query: 367 EWGVMFGIGAGVTVDTVVLRSFP 389
E GV+FG G G+T++TVVL+S P
Sbjct: 373 EMGVLFGFGPGLTIETVVLKSVP 395
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust.
Identities = 223/383 (58%), Positives = 290/383 (75%), Gaps = 2/383 (0%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ Q+ G A+ILAIGTANPPN + Q+ YPD+YFR+T ++H T LK KFKRICE+S +K+
Sbjct: 30 RKLQRADGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQ 89
Query: 68 RYFHVTEDILKKNPNICAY-DGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITH 126
RY ++TE+ILKKNP++CA+ + SLD+RQ +L EVP+L +EAA KAI+EWGQSKS ITH
Sbjct: 90 RYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITH 149
Query: 127 LIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARV 186
LIFCS D+PGAD+++ K+LGL+PSVKRV ++ GC+ G T +RMAKD AENN GARV
Sbjct: 150 LIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARV 209
Query: 187 LVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQT 246
LV+CS+ + TFRGPS+ +L L GQALFGDGA+ALI+GA+P + EK F+IV AQT
Sbjct: 210 LVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQV-EKACFEIVWTAQT 268
Query: 247 ILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPG 306
++P S+ + G+ RE+GLT L V ++S NIE C+ EAFS F I DWN LFW+V PG
Sbjct: 269 VVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQFKISDWNKLFWVVHPG 328
Query: 307 GPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGL 366
G AI++++EAKL L KL TRHV+SEYGNM V FILD+ R+ S + G TTGEGL
Sbjct: 329 GRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGL 388
Query: 367 EWGVMFGIGAGVTVDTVVLRSFP 389
E GV+FG G G+T++TVVL+S P
Sbjct: 389 EMGVLFGFGPGLTIETVVLKSVP 411
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 215/373 (57%), Positives = 274/373 (73%), Gaps = 1/373 (0%)
Query: 15 GLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTE 74
G ATILAIGT+NP N Q+ YPD++F VTN + T LK+KF+RIC+KS +KKR+FH+T+
Sbjct: 28 GPATILAIGTSNPTNIFEQSTYPDFFFDVTNCNDKTELKKKFQRICDKSGIKKRHFHLTD 87
Query: 75 DILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVG 134
+IL+KNP+IC + +SLD RQDI V EVPKL +EAA AIK+WGQ KS+ITHL+F + G
Sbjct: 88 EILRKNPSICKFKEASLDPRQDIAVLEVPKLAKEAAISAIKQWGQPKSKITHLVFATTSG 147
Query: 135 VDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLS 194
VDMPGAD+QL K+LGL P+VKRVMLY QG Y GAT +R+AKD AENN GARVLV CS+++
Sbjct: 148 VDMPGADFQLAKLLGLRPTVKRVMLYQQGXYAGATVLRVAKDLAENNKGARVLVACSEVT 207
Query: 195 LGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSD 254
TFR PS+ +L L G ALFGDGAAALI+G++P EKPLF+I + +LP SD
Sbjct: 208 AVTFRAPSETHLDGLVGSALFGDGAAALIVGSDP-VPQEEKPLFEIHWAGEAVLPDSDGA 266
Query: 255 VAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQI 314
+ G RE GL HL K+V ++S+NI+K L E +N +FW V PGGPAI++QI
Sbjct: 267 INGHLREAGLIFHLLKDVPGLISKNIDKVLAEPLEYVHFPSYNDMFWAVHPGGPAILDQI 326
Query: 315 EAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGI 374
EAKLGL K+ A+R VL+ YGNM SV F+LD+IR+ S E TTGEG EWG + G
Sbjct: 327 EAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQIRKNSEELHLPTTGEGFEWGFVIGF 386
Query: 375 GAGVTVDTVVLRS 387
G G+TV+T++LRS
Sbjct: 387 GPGLTVETLLLRS 399
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 282/383 (73%), Gaps = 1/383 (0%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ +Q+ G ATI+AIGTA PPN Q+ +PD+YFRVTNSD LK+KF+R+CEK+ VKK
Sbjct: 8 RREQRAQGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKK 67
Query: 68 RYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHL 127
RY H+TE+ILK+ P +C+Y +S D RQDI+V E+P+L +EAA KAIKEWG+ KS+ITHL
Sbjct: 68 RYLHLTEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHL 127
Query: 128 IFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVL 187
+FCS+ G+DMPGADY+L +LGL +V R+M+Y Q C++GA +R+AKD AENN GARVL
Sbjct: 128 VFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVL 187
Query: 188 VVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTI 247
VV ++++ +FRGP++ + LAGQA FGDGA A+++GA+P + EKP+++I + Q
Sbjct: 188 VVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGI-EKPIYEIAAAMQET 246
Query: 248 LPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGG 307
+ S V G R G T + + ++++N+ + L+ A +P G+++WN +FW+ PG
Sbjct: 247 VAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVFWVAHPGN 306
Query: 308 PAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLE 367
AI++ IEAKL L KLS RHV +EYGNM +V+F++DE+R++SA EG+ TTG+GL+
Sbjct: 307 WAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQ 366
Query: 368 WGVMFGIGAGVTVDTVVLRSFPF 390
WGV+ G G G++++TVVLRS P
Sbjct: 367 WGVLLGFGPGLSIETVVLRSMPL 389
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 281/383 (73%), Gaps = 1/383 (0%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ +Q+ G ATI+AIGTA PPN Q+ +PD+YFRVTNSD LK+KF+R+CEK+ VKK
Sbjct: 8 RREQRAQGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKK 67
Query: 68 RYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHL 127
RY H+TE+ILK+ P +C+Y +S D RQDI+V E+P+L +EAA KAIKEWG+ KS+ITHL
Sbjct: 68 RYLHLTEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHL 127
Query: 128 IFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVL 187
+FCS+ G+DMPGADY+L +LGL +V R+M+Y Q C++GA +R+AKD AENN GARVL
Sbjct: 128 VFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVL 187
Query: 188 VVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTI 247
VV ++++ +FRGP++ + LA QA FGDGA A+++GA+P + EKP+++I + Q
Sbjct: 188 VVACEITVLSFRGPNEGDFEALAFQAGFGDGAGAVVVGADPLEGI-EKPIYEIAAAMQET 246
Query: 248 LPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGG 307
+ S V G R G T + + ++++N+ + L+ A +P G+++WN +FW+ PG
Sbjct: 247 VAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVFWVAHPGN 306
Query: 308 PAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLE 367
AI++ IEAKL L KLS RHV +EYGNM +V+F++DE+R++SA EG+ TTG+GL+
Sbjct: 307 WAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQ 366
Query: 368 WGVMFGIGAGVTVDTVVLRSFPF 390
WGV+ G G G++++TVVLRS P
Sbjct: 367 WGVLLGFGPGLSIETVVLRSMPL 389
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/393 (52%), Positives = 272/393 (69%), Gaps = 4/393 (1%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
ME V+ + Q+ G AT++AIGTA+PP+ Q Y D YFR TNS+H LK+KF IC
Sbjct: 14 MEDVQGIRKAQKADGTATVMAIGTAHPPHIFPQDTYADVYFRATNSEHKVELKKKFDHIC 73
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+K+ + KRYF+ E+ LKK PNI +YD SL+ RQDI V VP LG EAA KAI+EWG+
Sbjct: 74 KKTMIGKRYFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAVKAIEEWGRP 133
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHL+FC+ GVDMP AD+Q K+LGL+ +V + +Y QG Y G T +R AKD AEN
Sbjct: 134 KSEITHLVFCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAEN 193
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVC++L++ R P++ +L G +LFGDGAAALIIG++P + EKP+F+I
Sbjct: 194 NRGARVLVVCAELTIMMLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGV-EKPMFEI 252
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGI---KDWN 297
V QT++P ++ + RE G+ +LSK +S N+E CL + F GI +DWN
Sbjct: 253 VCTKQTVIPNTEDVIHLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSVGITPPEDWN 312
Query: 298 SLFWIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEE 357
SLFWI PGG AI++Q+EAKL L+ +K A R VL +YGNM SV +ILDE+RRKSA +
Sbjct: 313 SLFWIPHPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAK 372
Query: 358 GKVTTGEGLEWGVMFGIGAGVTVDTVVLRSFPF 390
G T GEGLEWGV+ G G G+TV+T++L S P
Sbjct: 373 GLETYGEGLEWGVLLGFGPGITVETILLHSLPL 405
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/393 (52%), Positives = 272/393 (69%), Gaps = 4/393 (1%)
Query: 1 MEKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRIC 60
ME V+ + Q+ G AT++AIGTA+PP+ Q Y D YFR TNS+H LK+KF IC
Sbjct: 14 MEDVQGIRKAQKADGTATVMAIGTAHPPHIFPQDTYADVYFRATNSEHKVELKKKFDHIC 73
Query: 61 EKSNVKKRYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQS 120
+K+ + KRYF+ E+ LKK PNI +YD SL+ RQDI V VP LG EAA KAI+EWG+
Sbjct: 74 KKTMIGKRYFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAVKAIEEWGRP 133
Query: 121 KSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAEN 180
KS+ITHL+FC+ GVDMP AD+Q K+LGL+ +V + +Y QG Y G T +R AKD AEN
Sbjct: 134 KSEITHLVFCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAEN 193
Query: 181 NPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQI 240
N GARVLVVC++L++ R P++ +L G +LFGDGAAALIIG++P + EKP+F+I
Sbjct: 194 NRGARVLVVCAELTIMGLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGV-EKPMFEI 252
Query: 241 VSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGI---KDWN 297
V QT++P ++ + RE G+ +LSK +S N+E CL + F GI +DWN
Sbjct: 253 VCTKQTVIPNTEDVIHLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSVGITPPEDWN 312
Query: 298 SLFWIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEE 357
SLFWI PGG AI++Q+EAKL L+ +K A R VL +YGNM SV +ILDE+RRKSA +
Sbjct: 313 SLFWIPHPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAK 372
Query: 358 GKVTTGEGLEWGVMFGIGAGVTVDTVVLRSFPF 390
G T GEGLEWGV+ G G G+TV+T++L S P
Sbjct: 373 GLETYGEGLEWGVLLGFGPGITVETILLHSLPL 405
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/379 (49%), Positives = 265/379 (69%), Gaps = 1/379 (0%)
Query: 12 QGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFH 71
Q G AT+LA+G A P N QA YPD++F +TNS+ LK KF+RIC+KS +KKR+F+
Sbjct: 30 QAVGPATVLAMGKAVPANVFEQATYPDFFFNITNSNDKPALKAKFQRICDKSGIKKRHFY 89
Query: 72 VTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCS 131
+ + IL+ NP +C Y +SL+ RQ+I V +VPKL +EA+ AIKEWG+ KS+ITH++ +
Sbjct: 90 LDQKILESNPAMCTYMETSLNCRQEIAVAQVPKLAKEASMNAIKEWGRPKSEITHIVMAT 149
Query: 132 LVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCS 191
GV+MPGA+ K+LGL P+V+RVM+Y QG + GAT +R+AKD AENN GARVL +CS
Sbjct: 150 TSGVNMPGAELATAKLLGLRPNVRRVMMYQQGXFAGATVLRVAKDLAENNAGARVLAICS 209
Query: 192 DLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGS 251
+++ TFR PS+ ++ L G ALFGDGAAA+I+G++P + E+P++++ + +LP S
Sbjct: 210 EVTAVTFRAPSETHIDGLVGSALFGDGAAAVIVGSDPRPGI-ERPIYEMHWAGEMVLPES 268
Query: 252 DSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIV 311
D + G E GL HL K+V ++++NI L + + G WN LFW V PGGPAI+
Sbjct: 269 DGAIDGHLTEAGLVFHLLKDVPGLITKNIGGFLKDTKNLVGASSWNELFWAVHPGGPAIL 328
Query: 312 NQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVM 371
+Q+EAKL L++ K A+R +LS+YGNM SV F+LD +R +S E K T GEG EWG +
Sbjct: 329 DQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKSTFGEGSEWGFL 388
Query: 372 FGIGAGVTVDTVVLRSFPF 390
G G G+TV+T++LR+ P
Sbjct: 389 IGFGPGLTVETLLLRALPL 407
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/384 (49%), Positives = 253/384 (65%), Gaps = 8/384 (2%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ Q+ GLA +LAIGTANPPNC+ Q + PD+YFRVTNSDH+T LK KFKRIC++ V++
Sbjct: 32 RRSQRADGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQR 91
Query: 68 RYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHL 127
RY H TE++L +P D SLD+R DI VP+L EAA KAI EWG+ + ITHL
Sbjct: 92 RYLHHTEEMLSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHL 151
Query: 128 IFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVL 187
+ + G +PG D++L +LGL PSV+R ML+ GC+ G A+R+AKD AEN+ GARVL
Sbjct: 152 VVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVL 211
Query: 188 VVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTI 247
VV ++L+L F GP + L Q LFGDGAAA+I+GA+ D E+PLF+IVS AQTI
Sbjct: 212 VVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDV--ERPLFEIVSAAQTI 269
Query: 248 LPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAF----SPFGIKDWNSLFWIV 303
+P SD + +F E L L + V ++ +N+E+CL + F G WN LFW V
Sbjct: 270 IPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDLFWAV 329
Query: 304 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 363
PG I++Q++A LGL+ KL+A+R VLS+YGNM G +V F LDE+RR+ E G
Sbjct: 330 HPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKE--AAAAG 387
Query: 364 EGLEWGVMFGIGAGVTVDTVVLRS 387
E E GVM G G+TVD ++L +
Sbjct: 388 EWPELGVMMAFGPGMTVDAMLLHA 411
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/384 (49%), Positives = 253/384 (65%), Gaps = 8/384 (2%)
Query: 8 KNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK 67
+ Q+ GLA +LAIGTANPPNC+ Q + PD+YFRVTNSDH+T LK KFKRIC++ V++
Sbjct: 2 RRSQRADGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQR 61
Query: 68 RYFHVTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHL 127
RY H TE++L +P D SLD+R DI VP+L EAA KAI EWG+ + ITHL
Sbjct: 62 RYLHHTEEMLSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHL 121
Query: 128 IFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVL 187
+ + G +PG D++L +LGL PSV+R ML+ GC+ G A+R+AKD AEN+ GARVL
Sbjct: 122 VVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVL 181
Query: 188 VVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTI 247
VV ++L+L F GP + L Q LFGDGAAA+I+GA+ D E+PLF+IVS AQTI
Sbjct: 182 VVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDV--ERPLFEIVSAAQTI 239
Query: 248 LPGSDSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAF----SPFGIKDWNSLFWIV 303
+P SD + +F E L L + V ++ +N+E+CL + F G WN LFW V
Sbjct: 240 IPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDLFWAV 299
Query: 304 QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTG 363
PG I++Q++A LGL+ KL+A+R VLS+YGNM G +V F LDE+RR+ E G
Sbjct: 300 HPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKE--AAAAG 357
Query: 364 EGLEWGVMFGIGAGVTVDTVVLRS 387
E E GVM G G+TVD ++L +
Sbjct: 358 EWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 166/342 (48%), Gaps = 13/342 (3%)
Query: 19 ILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTEDILK 78
+L IG + P I Q D + T +K KRI E+S +K R H+ D K
Sbjct: 16 VLGIGISVPGEPISQQSLKDSISNDFSDKAET--NEKVKRIFEQSQIKTR--HLVRDYTK 71
Query: 79 KNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMP 138
+I ++ + + VP L ++A +A+K+WG K ITH++ + G+ +P
Sbjct: 72 PENSIKFRHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIP 131
Query: 139 GADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTF 198
+++L +LGLN V+RV L GC G +++R A A+ +P R+LVVC+++ F
Sbjct: 132 DVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHF 191
Query: 199 RGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQ 258
+ + ++F DG+AA IIG NP + E PL++++ P +++ +
Sbjct: 192 SNTDGGDQ--MVASSIFADGSAAYIIGCNP--RIEETPLYEVMCSINRSFPNTENAMVWD 247
Query: 259 FREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLF-----WIVQPGGPAIVNQ 313
+ G + L ++ V+ IE +D ++ ++ +++ GG +I+
Sbjct: 248 LEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDCEFLIHTGGKSILMN 307
Query: 314 IEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSA 355
IE LG+ ++ T V YGNM SV F++D R+ +
Sbjct: 308 IENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHARKSKS 349
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 166/366 (45%), Gaps = 13/366 (3%)
Query: 16 LATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTED 75
+A I + T P + Q+D D RV +++ R+ +KS + R V D
Sbjct: 32 VAVIEGLATGTPRRVVNQSDAAD---RVAELFLDPGQRERIPRVYQKSRITTRRMAV--D 86
Query: 76 ILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGV 135
L ++ + +++ R + L + + +A+ ++I L+ + G
Sbjct: 87 PLDAKFDVFRREPATIRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGF 146
Query: 136 DMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSL 195
PG D + K LGL+PS+ RV++ F GC A+ A ++ +P + LVVC +L
Sbjct: 147 IAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCS 206
Query: 196 GTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDV 255
D N + +LFGDG AAL+IGA+ E + S +L ++ +
Sbjct: 207 VNAVFADDINDVVI--HSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGI 264
Query: 256 AGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQIE 315
G+T LS+N+ + + + E G++ + W + PGGP I+ Q
Sbjct: 265 VLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSV 324
Query: 316 AKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIG 375
LG+ + + + VL+ +GNM VS+ F+L+ + +++ ++T GV F G
Sbjct: 325 RSLGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAIST------GVAFAFG 378
Query: 376 AGVTVD 381
GVTV+
Sbjct: 379 PGVTVE 384
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 166/366 (45%), Gaps = 13/366 (3%)
Query: 16 LATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYFHVTED 75
+A I + T P + Q+D D RV +++ R+ +KS + R V D
Sbjct: 32 VAVIEGLATGTPRRVVNQSDAAD---RVAELFLDPGQRERIPRVYQKSRITTRRMAV--D 86
Query: 76 ILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGV 135
L ++ + +++ R + L + + +A+ ++I L+ + G
Sbjct: 87 PLDAKFDVFRREPATIRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGF 146
Query: 136 DMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSL 195
PG D + K LGL+PS+ RV++ F GC A+ A ++ +P + LVVC +L
Sbjct: 147 IAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELFS 206
Query: 196 GTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDV 255
D N + +LFGDG AAL+IGA+ E + S +L ++ +
Sbjct: 207 VNAVFADDINDVVI--HSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGI 264
Query: 256 AGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQIE 315
G+T LS+N+ + + + E G++ + W + PGGP I+ Q
Sbjct: 265 VLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSV 324
Query: 316 AKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIG 375
LG+ + + + VL+ +GNM VS+ F+L+ + +++ ++T GV F G
Sbjct: 325 RSLGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAIST------GVAFAFG 378
Query: 376 AGVTVD 381
GVTV+
Sbjct: 379 PGVTVE 384
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 168/387 (43%), Gaps = 38/387 (9%)
Query: 36 YPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK-----RYFHVTEDILKKNPN---ICAYD 87
YP Y D + +L +++ E +KK RY + + NP+ + +
Sbjct: 41 YPPYSL---GPDAIDILSKRYHP--ESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPN 95
Query: 88 GSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKM 147
++ ++ + + L EA+ KA+ E +QITH++ + PG D+ + K
Sbjct: 96 PPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKE 155
Query: 148 LGLNPSVKRVMLYFQGCYIGATAIRMAKDF-----AENNPGARVLVVCSDLSLGTFRG-- 200
LGL+ +++V+L+ GC G A+R A + A P AR+LV+ ++S R
Sbjct: 156 LGLSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKP-ARILVLALEVSTTMVRSEL 214
Query: 201 -PSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQF 259
DA G ALF D A+A+I+ + ++ ++ ++P S+ D+
Sbjct: 215 ESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDV 274
Query: 260 REMGLTVHLSKNVATVVSENIEKCLDEAFS------PFGIKDWNSLFWIVQPGGPAIVNQ 313
MG V LS V + +++ + S P + W + PGG I++
Sbjct: 275 DPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSG 334
Query: 314 IEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKS----AEEGKVTTGEGLEWG 369
E+ +GL + + A+ +GN ++F +L+ +R K A GKV E+
Sbjct: 335 AESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK-----EYV 389
Query: 370 VMFGIGAGVTVDTVVL-RSFPFPTVTT 395
V G G+ V+ +L R P TT
Sbjct: 390 VGCAFGPGINVEMCMLKRRMNAPARTT 416
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 37/377 (9%)
Query: 36 YPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK-----RYFHVTEDILKKNPN---ICAYD 87
YP Y D + +L +++ E +KK RY + + NP+ + +
Sbjct: 12 YPPYSL---GPDAIDILSKRYHP--ESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPN 66
Query: 88 GSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKM 147
++ ++ + + L EA+ KA+ E +QITH++ + PG D+ + K
Sbjct: 67 PPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKE 126
Query: 148 LGLNPSVKRVMLYFQGCYIGATAIRMAKDF-----AENNPGARVLVVCSDLSLGTFRG-- 200
LGL+ +++V+L+ G G A+R A + A P AR+LV+ ++S R
Sbjct: 127 LGLSDRLEKVLLHGIGXSGGLAALRTAANLCLGHTARGKP-ARILVLALEVSTTMVRSEL 185
Query: 201 -PSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQF 259
DA G ALF D A+A+I+ + ++ ++ ++P S+ D+ G
Sbjct: 186 ESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGGDV 245
Query: 260 REMGLTVHLSKNVATVVSENIEKCLDEAFS------PFGIKDWNSLFWIVQPGGPAIVNQ 313
MG V LS V + +++ + S P + W + PGG I++
Sbjct: 246 DPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSG 305
Query: 314 IEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKS----AEEGKVTTGEGLEWG 369
E+ +GL + + A+ +GN ++F +L+ +R K A GKV E+
Sbjct: 306 AESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK-----EYV 360
Query: 370 VMFGIGAGVTVDTVVLR 386
V G G+ V+ +L+
Sbjct: 361 VGCAFGPGINVEMCMLK 377
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 163/373 (43%), Gaps = 29/373 (7%)
Query: 36 YPDYYFRVTNSDHMTLLKQKFKRICEKSNVKK-----RYFHVTEDILKKNPN---ICAYD 87
YP Y D + +L +++ E +KK RY + + NP+ + +
Sbjct: 12 YPPYSL---GPDAIDILSKRYHP--ESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPN 66
Query: 88 GSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKM 147
++ ++ + + L EA+ KA+ E +QITH++ + PG D+ + K
Sbjct: 67 PPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKE 126
Query: 148 LGLNPSVKRVMLYFQGCYIGATAIRMAKDF-----AENNPGARVLVVCSDLSLGTFRG-- 200
LGL+ +++V+L+ G G A+R A + A P AR+LV+ ++S R
Sbjct: 127 LGLSDRLEKVLLHGIGXSGGLAALRTAANLCLGHTARGKP-ARILVLALEVSTTMVRSEL 185
Query: 201 -PSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQF 259
DA G ALF D A+A+I+ + ++ ++ ++P S+ D+
Sbjct: 186 ESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDV 245
Query: 260 REMGLTVHLSKNVATVVSENIEKCLDEAFS------PFGIKDWNSLFWIVQPGGPAIVNQ 313
MG V LS V + +++ + S P + W + PGG I++
Sbjct: 246 DPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSG 305
Query: 314 IEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFG 373
E+ +GL + + A+ +GN ++F +L+ +R K + G+ E+ V
Sbjct: 306 AESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDM-DALAPGGKVKEYVVGCA 364
Query: 374 IGAGVTVDTVVLR 386
G G+ V+ +L+
Sbjct: 365 FGPGINVEMCMLK 377
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 148/370 (40%), Gaps = 27/370 (7%)
Query: 13 GGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSNVKKRYF-H 71
G G L + + P + + R ++DH L R+ E + V+ R+
Sbjct: 5 GSGFMATLCRPSVSVPEHVITMEETLELARRRHTDHPQL--PLALRLIENTGVRTRHIVQ 62
Query: 72 VTEDILKKNPNICAYDGSSLDSRQDILVREVPKLGEEAATKAIKEWGQSKSQITHLIFCS 131
ED L+ + R + RE +A+ + + I +I+ S
Sbjct: 63 PIEDTLEH---------PGFEDRNKVYEREAKSRVPAVIQRALDDAELLATDIDVIIYVS 113
Query: 132 LVGVDMPGADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCS 191
G MP L +G + + +++ + GC G AI A DF P A L+V
Sbjct: 114 CTGFMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVAC 173
Query: 192 DLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGS 251
+ ++ P+D +G L LFGDG AA ++ T + ++ ++P +
Sbjct: 174 EFCSLCYQ-PTDLGVGSLLCNGLFGDGIAAAVVRGRGGTGV------RLERNGSYLIPKT 226
Query: 252 DSDVAGQFREMGLTVHLSKNVATVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIV 311
+ + + G L K V + E + L E G + F+IV GGP I+
Sbjct: 227 EDWIMYDVKATGFHFLLDKRVPATM-EPLAPALKELAGEHGWDASDLDFYIVHAGGPRIL 285
Query: 312 NQIEAKLGLKQQKLSATRHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVM 371
+ + L + +R L+EYGN+ V LD +RR +EG V G G++
Sbjct: 286 DDLSTFLEVDPHAFRFSRATLTEYGNIASAVV---LDALRRLF-DEGGVEEG---ARGLL 338
Query: 372 FGIGAGVTVD 381
G G G+T +
Sbjct: 339 AGFGPGITAE 348
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 117/282 (41%), Gaps = 35/282 (12%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVKRVM 158
V +G EAAT+AI+ G K QI ++ + P A Q+ MLG+ P+
Sbjct: 74 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAA 133
Query: 159 LYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDG 218
Y A+ +A + ++ LVV SD+ L P+D G + +FGDG
Sbjct: 134 AXAGFTY----ALSVADQYVKSGAVKYALVVGSDV-LARTCDPTDR--GTI---IIFGDG 183
Query: 219 AAALIIGANPDTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVS 277
A A ++ A+ + + L S G LP +D + LT+ ++ V+
Sbjct: 184 AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADR--VNPENSIHLTMAGNEVFKVAVT 241
Query: 278 ENIEKCLDEAFSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYG 336
E + +DE + + D + L W+V I++ KLG+ + T L +G
Sbjct: 242 E-LAHIVDETLAANNL-DRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVT---LDRHG 296
Query: 337 NMGGVSVFFILDEIRRKSAEEGKVTTGE---------GLEWG 369
N SV LDE R +G++ G+ G WG
Sbjct: 297 NTSAASVPCALDEAVR----DGRIKPGQLVLLEAFGGGFTWG 334
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 118/282 (41%), Gaps = 35/282 (12%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVKRVM 158
V +G EAAT+AI+ G K QI ++ + P A Q+ MLG+ P+
Sbjct: 51 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFD--- 107
Query: 159 LYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDG 218
C A+ +A + ++ LVV SD+ L P+D G + +FGDG
Sbjct: 108 -VAAACAGFTYALSVADQYVKSGAVKYALVVGSDV-LARTCDPTDR--GTI---IIFGDG 160
Query: 219 AAALIIGANPDTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVS 277
A A ++ A+ + + L S G LP ++D + LT+ ++ V+
Sbjct: 161 AGAAVLAASEEPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTMAGNEVFKVAVT 218
Query: 278 ENIEKCLDEAFSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYG 336
E + +DE + + D + L W+V I++ KLG+ + T L +G
Sbjct: 219 E-LAHIVDETLAANNL-DRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVT---LDRHG 273
Query: 337 NMGGVSVFFILDEIRRKSAEEGKVTTGE---------GLEWG 369
N SV LDE R +G++ G+ G WG
Sbjct: 274 NTSAASVPCALDEAVR----DGRIKPGQLVLLEAFGGGFTWG 311
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 18/282 (6%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRVMLYF 161
V GE AA A++ G + + LI + +PG D L L L +
Sbjct: 137 VQAYGERAARGALQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQ 196
Query: 162 QGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAA 221
C G ++ +A D +P VLVV S+ +L T P+D L L + LF D A A
Sbjct: 197 WACVAGTRSLALAADLVAADPDRVVLVVISE-ALSTTYQPADDTLESLIVRLLFADTAVA 255
Query: 222 LIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVSENIE 281
++ P + + ++ + LPG+ + R G + + V E +
Sbjct: 256 AVVTGRP----RPESVLRLDAAWHHTLPGTRDLHRLETRADGTHFVMDRRGPRAVQETVT 311
Query: 282 KCLDEAFSPF--GIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQK--LSATRHVLSEYGN 337
+ + W+ + PGG ++ +E + + LS +R + GN
Sbjct: 312 AMWEWLRVRYEDDPSSWHPDVLLAHPGGTRVLEYMEQTMPDEWPSGLLSYSRDSYTS-GN 370
Query: 338 MGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIGAGVT 379
GG +VF IL R++ + G+ T V++ G+T
Sbjct: 371 RGGAAVFDIL----RRAHDAGQKTGSR----AVLYAAAPGLT 404
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 117/282 (41%), Gaps = 35/282 (12%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVKRVM 158
V +G EAAT+AI+ G K QI ++ + P A Q+ MLG+ P+
Sbjct: 51 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAA 110
Query: 159 LYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDG 218
Y A+ +A + ++ LVV SD+ L P+D G + +FGDG
Sbjct: 111 AXAGFTY----ALSVADQYVKSGAVKYALVVGSDV-LARTCDPTDR--GTI---IIFGDG 160
Query: 219 AAALIIGANPDTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVS 277
A A ++ A+ + + L S G LP +D + LT+ ++ V+
Sbjct: 161 AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADR--VNPENSIHLTMAGNEVFKVAVT 218
Query: 278 ENIEKCLDEAFSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYG 336
E + +DE + + D + L W+V I++ KLG+ + T L +G
Sbjct: 219 E-LAHIVDETLAANNL-DRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVT---LDRHG 273
Query: 337 NMGGVSVFFILDEIRRKSAEEGKVTTGE---------GLEWG 369
N SV LDE R +G++ G+ G WG
Sbjct: 274 NTSAASVPCALDEAVR----DGRIKPGQLVLLEAFGGGFTWG 311
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 143 QLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPS 202
Q+ +LG+ P + + CY AI++AKD+ P +VLV+ +D +
Sbjct: 90 QIHNLLGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNS-- 147
Query: 203 DANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A++I NP
Sbjct: 148 -------GGEPTQGAGAVAMVIAHNP 166
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 143 QLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPS 202
Q+ +LG+ P + + CY AI++AKD+ P +VLV+ +D +
Sbjct: 90 QIHNLLGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNS-- 147
Query: 203 DANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A++I NP
Sbjct: 148 -------GGEPTQGAGAVAMVIAHNP 166
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 143 QLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPS 202
Q+ +LG+ P R + CY AI++AKD+ P +VLV+ +D +
Sbjct: 91 QIHNLLGIQP-FARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNS-- 147
Query: 203 DANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A++I NP
Sbjct: 148 -------GGEPTQGAGAVAMVIAHNP 166
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 114/282 (40%), Gaps = 35/282 (12%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVKRVM 158
V G EAAT+AI+ G K QI ++ + P A Q+ LG+ P+
Sbjct: 51 VSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKGCPAFDVAA 110
Query: 159 LYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDG 218
Y A+ +A + ++ LVV SD+ L P+D G + +FGDG
Sbjct: 111 AXAGFTY----ALSVADQYVKSGAVKYALVVGSDV-LARTCDPTD--RGTI---IIFGDG 160
Query: 219 AAALIIGANPDTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVS 277
A A ++ A+ + + L S G LP ++D + LT ++ V+
Sbjct: 161 AGAAVLAASEEPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTXAGNEVFKVAVT 218
Query: 278 ENIEKCLDEAFSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYG 336
E + +DE + + D + L W+V I++ KLG + T L +G
Sbjct: 219 E-LAHIVDETLAANNL-DRSQLDWLVPHQANLRIISATAKKLGXSXDNVVVT---LDRHG 273
Query: 337 NMGGVSVFFILDEIRRKSAEEGKVTTGE---------GLEWG 369
N SV LDE R +G++ G+ G WG
Sbjct: 274 NTSAASVPCALDEAVR----DGRIKPGQLVLLEAFGGGFTWG 311
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 113/282 (40%), Gaps = 35/282 (12%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD-MPGADYQLTKMLGLN--PSVKRVM 158
V G EAAT+AI+ G K QI ++ + P A Q+ LG+ P+
Sbjct: 51 VSTXGFEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKGCPAFD--- 107
Query: 159 LYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDG 218
C A+ +A + ++ LVV SD+ L P+D G + +FGDG
Sbjct: 108 -VAAACAGFTYALSVADQYVKSGAVKYALVVGSDV-LARTCDPTD--RGTI---IIFGDG 160
Query: 219 AAALIIGANPDTTLSEKPLFQIVS-GAQTILPGSDSDVAGQFREMGLTVHLSKNVATVVS 277
A A ++ A+ + + L S G LP ++D + LT ++ V+
Sbjct: 161 AGAAVLAASEEPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTXAGNEVFKVAVT 218
Query: 278 ENIEKCLDEAFSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSATRHVLSEYG 336
E + +DE + D + L W+V I++ KLG + T L +G
Sbjct: 219 E-LAHIVDETLAANN-NDRSQLDWLVPHQANLRIISATAKKLGXSXDNVVVT---LDRHG 273
Query: 337 NMGGVSVFFILDEIRRKSAEEGKVTTGE---------GLEWG 369
N SV LDE R +G++ G+ G WG
Sbjct: 274 NTSAASVPCALDEAVR----DGRIKPGQLVLLEAFGGGFTWG 311
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 118 GQSKSQITHLIFCSLVGVDMP--GADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAK 175
+ K +I +I + VD GA Y + +LG+ P + + CY A+ AK
Sbjct: 65 AEDKEKIDMVILATESSVDQSKAGAVY-VHSLLGIQPFARSFEMKEAXCYSATAALNYAK 123
Query: 176 DFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANP 228
E +P RVLV+ SD++ P G++ G G+ A+++ +P
Sbjct: 124 LHVEKHPDTRVLVLASDIAKYGIGTP---------GESTQGAGSIAMLVKKDP 167
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 214 LFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFREMGLTVHLSKNVA 273
LFGDGA A+++ + D + + +L +D G R G + +
Sbjct: 155 LFGDGAGAVVVTRSEDKSDILATRMYAEGSLEELL---HADNCGYIRMKG------RELF 205
Query: 274 TVVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLS 333
V ++E+ E G+K I I+N + KL + ++K+ +
Sbjct: 206 KVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINALAEKLNIPKEKVFVN---IQ 262
Query: 334 EYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIGAGVTVDTVVLR 386
+YGN S+ L E + +EGKV G+ + +M +G G+T V+LR
Sbjct: 263 KYGNTSAASIPIALHE----AIKEGKVKRGDLI---LMTAMGGGLTWGAVLLR 308
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 118 GQSKSQITHLIFCSLVGVDMP--GADYQLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAK 175
+ K +I +I + VD GA Y + +LG+ P + + + CY A+ AK
Sbjct: 99 AEDKEKIDMVILATESSVDQSKAGAVY-VHSLLGIQPFARSFEMK-EACYSATAALNYAK 156
Query: 176 DFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANP 228
E +P RVLV+ SD++ P G++ G G+ A+++ +P
Sbjct: 157 LHVEKHPDTRVLVLASDIAKYGIGTP---------GESTQGAGSIAMLVKKDP 200
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 143 QLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPS 202
Q+ +LG+ P R + Y AI++AKD+ P +VLV+ +D
Sbjct: 91 QIHNLLGIQP-FARCFEMKEAXYAATPAIQLAKDYLATRPNEKVLVIATDT--------- 140
Query: 203 DANLGCLA-GQALFGDGAAALIIGANP 228
A G + G+ G GA A++I NP
Sbjct: 141 -ARYGLNSGGEPTQGAGAVAMVIAHNP 166
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 143 QLTKMLGLNPSVKRVMLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPS 202
Q+ +LG+ P R + Y AI++AKD+ P +VLV+ +D
Sbjct: 91 QIHNLLGIQP-FARCFEMKEAXYAATPAIQLAKDYLATRPNEKVLVIATDT--------- 140
Query: 203 DANLGCLA-GQALFGDGAAALIIGANP 228
A G + G+ G GA A++I NP
Sbjct: 141 -ARYGLNSGGEPTQGAGAVAMVIAHNP 166
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query: 214 LFGDGAAALIIGANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFREMGLTVHLSKNVA 273
LFGDGA A+I+ A+ + + L G+ + + + +V G +H+
Sbjct: 171 LFGDGAGAVILQASDEPGVLASALH--ADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAV 228
Query: 274 TVVSENI-EKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLSATRHVL 332
++ N+ EK EA + + I I+ KLGL Q+++ T +
Sbjct: 229 FKLAVNVLEKVAVEALEKANLSAEQIDWLIPHQANIRIMQSTCRKLGLPQERMIVT---V 285
Query: 333 SEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIGAGVTVDTVVLR 386
E+GN S+ LD R +G++ G+ + ++ G+G G T V+R
Sbjct: 286 GEHGNTSAASIPLALDVAVR----DGRIKRGQNV---LIEGVGGGFTWGASVIR 332
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 144 LTKMLGLNPSVKRVMLYFQGCYIGATA-IRMAKDFAENNPGARVLVVCSDLS-LGTFRGP 201
L +++G+ P + + +GCY GATA +++AK+ +P +VLVV +D++ G G
Sbjct: 92 LHRLMGIQPFARSFEIK-EGCY-GATAGLQLAKNHVALHPDKKVLVVAADIAKYGLNSG- 148
Query: 202 SDANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A+++ + P
Sbjct: 149 ---------GEPTQGAGAVAMLVASEP 166
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 109/282 (38%), Gaps = 33/282 (11%)
Query: 100 REVPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVDMPGADYQLTKMLGLNPSVKRV-- 157
++ L EA+ KAI + G I +I + G DMP + ML +V
Sbjct: 49 QDTSDLAYEASVKAIADAGIQPEDIDMIIVATATG-DMPFP--TVANMLQERLGTGKVAS 105
Query: 158 MLYFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGD 217
M C ++ AK + ++ +LVV +D L +D + L FGD
Sbjct: 106 MDQLAACSGFMYSMITAKQYVQSGDYHNILVVGAD-KLSKITDLTDRSTAVL-----FGD 159
Query: 218 GAAALIIG--ANPDTTLSEKPLFQIVSGAQTILPGSDSDVAGQFREM-GLTVHLSKNVAT 274
GA A+IIG + +S + G L + RE+ V + + +T
Sbjct: 160 GAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDAST 219
Query: 275 VVSENIEKCLDEAFSPFGIKDWNSLFWIVQPGGPAIVNQIEAKLGLKQQKLSATRHVLSE 334
V E D+ LF I I+ +LG+ + K+S + +++
Sbjct: 220 RVVEKANLTSDDI----------DLF-IPHQANIRIMESARERLGISKDKMSVS---VNK 265
Query: 335 YGNMGGVSVFFILD-EIRRKSAEEGK----VTTGEGLEWGVM 371
YGN S+ +D E++ ++ V G GL WG M
Sbjct: 266 YGNTSAASIPLSIDQELKNGKLKDDDTIVLVGFGGGLTWGAM 307
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 144 LTKMLGLNPSVKRVMLYFQGCYIGATA-IRMAKDFAENNPGARVLVVCSDLS-LGTFRGP 201
L +++G+ P + + + C GATA +++AK+ +P +VLVV +D++ G G
Sbjct: 92 LHRLMGIQPFARSFEIK-EACXYGATAGLQLAKNHVALHPDKKVLVVAADIAKYGLNSG- 149
Query: 202 SDANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A+++ + P
Sbjct: 150 ---------GEPTQGAGAVAMLVASEP 167
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 144 LTKMLGLNPSVKRVMLYFQGCYIGATA-IRMAKDFAENNPGARVLVVCSDLS-LGTFRGP 201
L +++G+ P + + + CY GATA +++AK+ +P +VLVV +D++ G G
Sbjct: 92 LHRLMGIQPFARSFEIK-EACY-GATAGLQLAKNHVALHPDKKVLVVAADIAKYGLNSG- 148
Query: 202 SDANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A+++ + P
Sbjct: 149 ---------GEPTQGAGAVAMLVASEP 166
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 144 LTKMLGLNPSVKRVMLYFQGCYIGATA-IRMAKDFAENNPGARVLVVCSDLS-LGTFRGP 201
L +++G+ P + + + CY GATA +++AK+ +P +VLVV +D++ G G
Sbjct: 97 LHRLMGIQPFARSFEIK-EACY-GATAGLQLAKNHVALHPDKKVLVVAADIAKYGLNSG- 153
Query: 202 SDANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A+++ + P
Sbjct: 154 ---------GEPTQGAGAVAMLVSSEP 171
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 2 EKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYP-DYYFRVTNSDHMTLLKQKFKRIC 60
+KV + Q+Q A+ C Q DY DY+ R TN H ++K+ + ++
Sbjct: 60 QKVAEAAKQKQVSPYDFTTAVA-GEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLE 118
Query: 61 EKSNV 65
+K ++
Sbjct: 119 QKGDI 123
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 2 EKVKDGKNQQQGGGLATILAIGTANPPNCIYQADYP-DYYFRVTNSDHMTLLKQKFKRIC 60
+KV + Q+Q A+ C Q DY DY+ R TN H ++K+ + ++
Sbjct: 60 QKVAEAAKQKQVSPYDFTTAVA-GEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLE 118
Query: 61 EKSNV 65
+K ++
Sbjct: 119 QKGDI 123
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 144 LTKMLGLNPSVKRVMLYFQGCYIGATA-IRMAKDFAENNPGARVLVVCSDLS-LGTFRGP 201
L +++G+ P + + + GATA +++AK+ +P +VLVV +D++ G G
Sbjct: 111 LHRLMGIQPFARSFEI--KEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKYGLNSG- 167
Query: 202 SDANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A+++ + P
Sbjct: 168 ---------GEPTQGAGAVAMLVASEP 185
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 144 LTKMLGLNPSVKRVMLYFQGCYIGATA-IRMAKDFAENNPGARVLVVCSDLS-LGTFRGP 201
L +++G+ P + + + GATA +++AK+ +P +VLVV +D++ G G
Sbjct: 97 LHRLMGIQPFARSFEI--KEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKYGLNSG- 153
Query: 202 SDANLGCLAGQALFGDGAAALIIGANP 228
G+ G GA A+++ + P
Sbjct: 154 ---------GEPTQGAGAVAMLVSSEP 171
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSN 64
DG Q + G + ILA A + F +N +HMTLLK + C+ SN
Sbjct: 347 DGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISN 405
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSN 64
DG Q + G + ILA A + F +N +HMTLLK + C+ SN
Sbjct: 174 DGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISN 232
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSN 64
DG Q + G + ILA A + F +N +HMTLLK + C+ SN
Sbjct: 170 DGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISN 228
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSN 64
DG Q + G + ILA A + F +N +HMTLLK + C+ SN
Sbjct: 167 DGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISN 225
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 6 DGKNQQQGGGLATILAIGTANPPNCIYQADYPDYYFRVTNSDHMTLLKQKFKRICEKSN 64
DG Q + G + ILA A + F +N +HMTLLK + C+ SN
Sbjct: 167 DGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISN 225
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 117/298 (39%), Gaps = 46/298 (15%)
Query: 102 VPKLGEEAATKAIKEWGQSKSQITHLIFCSLVGVD--MPGADYQLTKMLGLNPSVKRVML 159
V +G EAA AI E Q Q LI + P A Q+ +L ++ ++ +
Sbjct: 58 VATMGFEAAKNAI-EAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNIDDAISFDLA 116
Query: 160 YFQGCYIGATAIRMAKDFAENNPGARVLVVCSDLSLGTFRGPSDANLGCLAGQALFGDGA 219
++ A+ +A F + LV+ SDL+ R + + + LFGDGA
Sbjct: 117 AAXTGFV--YALSVADQFIRAGKVKKALVIGSDLN---SRKLDETDRSTVV---LFGDGA 168
Query: 220 AALIIGANPDTTLSEKPLFQIVSGAQTIL---PGSDSDVAGQFREMG-----LTVHLSKN 271
A+I+ A+ + L ++ P + +G G L V N
Sbjct: 169 GAVILEASEQEGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSN 228
Query: 272 VA--TVVSENIEKCLDEAFSPFGIKDWNSLFWIV-QPGGPAIVNQIEAKLGLKQQKLSAT 328
V T+++ N++K KD L W+V I+ KL + ++ T
Sbjct: 229 VVEETLLANNLDK-----------KD---LDWLVPHQANLRIITATAKKLEMDMSQVVVT 274
Query: 329 RHVLSEYGNMGGVSVFFILDEIRRKSAEEGKVTTGEGLEWGVMFGIGAGVTVDTVVLR 386
L +Y N +V LDE R +G++ G+ L ++ G G T + ++R
Sbjct: 275 ---LDKYANNSAATVPVALDEAIR----DGRIQRGQLL---LLEAFGGGWTWGSALVR 322
>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From
Mycobacterium Marinum
Length = 298
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 174 AKDFAENNPGARVLVVCSD---LSLGTFRGPSDANLGCLAGQALFGDGAAALIIGANPD- 229
A D AE +PG RV+V+ G + G +DA G A D A ++G P
Sbjct: 65 AIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPH 124
Query: 230 -TTLSEKPLFQIVSG 243
T+ KP+ ++G
Sbjct: 125 FVTMLRKPVIAAING 139
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 33 QADYP-DYYFRVTNSDHMTLLKQKFKRICEKSNV 65
Q DY DY+ R TN H ++K+ + ++ +K ++
Sbjct: 90 QMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDI 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,221,242
Number of Sequences: 62578
Number of extensions: 502906
Number of successful extensions: 1315
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 86
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)