Query 016112
Match_columns 395
No_of_seqs 195 out of 752
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:05:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x5b_A Signal transducing adap 100.0 7.1E-45 2.4E-49 326.7 17.0 149 39-189 8-157 (163)
2 3ldz_A STAM-1, signal transduc 100.0 3.2E-44 1.1E-48 314.9 15.4 137 45-183 3-140 (140)
3 1juq_A ADP-ribosylation factor 100.0 1.2E-43 4.1E-48 321.0 17.2 158 39-201 3-169 (171)
4 1elk_A Target of MYB1; superhe 100.0 7E-43 2.4E-47 311.9 15.7 146 39-184 5-157 (157)
5 1mhq_A ADP-ribosylation factor 100.0 2.4E-42 8.2E-47 305.6 15.0 138 47-187 1-143 (148)
6 3zyq_A Hepatocyte growth facto 100.0 2E-41 6.8E-46 319.2 16.9 147 40-187 1-148 (226)
7 3g2s_A C-terminal fragment of 100.0 3.5E-41 1.2E-45 298.3 16.3 134 45-181 9-147 (149)
8 3rru_A TOM1L1 protein; structu 100.0 2E-40 6.7E-45 294.3 13.2 135 45-179 14-152 (152)
9 1dvp_A HRS, hepatocyte growth 100.0 4.1E-38 1.4E-42 295.4 17.0 150 41-195 1-151 (220)
10 1oxz_A ADP-ribosylation factor 99.8 1.4E-20 4.7E-25 171.2 7.9 90 227-316 74-166 (186)
11 1wrd_A TOM1, target of MYB pro 99.8 8.7E-20 3E-24 151.5 9.9 89 226-315 10-100 (103)
12 1naf_A ADP-ribosylation factor 99.8 2.1E-19 7.2E-24 159.4 11.2 90 227-316 58-150 (158)
13 1wr6_A ADP-ribosylation factor 99.8 2.4E-19 8.1E-24 150.5 8.3 89 228-316 7-97 (111)
14 1o3x_A ADP-ribosylation factor 99.8 1.5E-18 5.1E-23 151.4 11.3 87 227-313 49-138 (140)
15 1vdy_A Hypothetical protein (R 98.0 3.9E-05 1.3E-09 66.6 10.5 105 49-155 13-128 (140)
16 1inz_A EPS15-interacting porte 98.0 2.5E-05 8.4E-10 68.5 8.9 121 34-155 10-138 (148)
17 1xgw_A Epsin 4; ENTH, enthopro 97.8 0.00041 1.4E-08 62.3 14.2 116 38-156 25-151 (176)
18 1eyh_A Epsin; superhelix of he 97.7 0.0002 6.9E-09 62.3 10.5 111 45-156 3-121 (144)
19 1sz9_A PCF11 protein; RNA poly 97.7 0.00046 1.6E-08 60.0 12.2 82 78-161 37-118 (144)
20 3onk_A Epsin-3, ENT3; helix, p 97.4 0.0011 3.6E-08 58.2 11.3 113 44-157 8-129 (150)
21 2pjw_V Vacuolar protein sortin 97.2 0.003 1E-07 50.7 9.8 72 236-310 9-83 (91)
22 2pjw_H Uncharacterized protein 96.6 0.0026 8.9E-08 50.7 5.0 73 236-311 10-86 (88)
23 3zyl_A Phosphatidylinositol-bi 95.9 0.036 1.2E-06 52.9 10.0 90 30-120 9-101 (271)
24 4flb_A Regulation of nuclear P 95.7 0.039 1.3E-06 46.5 8.4 91 67-158 23-113 (132)
25 3zym_A Phosphatidylinositol-bi 95.5 0.064 2.2E-06 52.1 10.2 88 32-120 11-101 (310)
26 1hx8_A Synapse-enriched clathr 95.2 0.11 3.7E-06 50.2 10.7 79 46-124 22-101 (299)
27 3d9j_A RNA-binding protein 16; 94.8 0.13 4.4E-06 44.4 8.9 95 60-157 21-119 (145)
28 4fu3_A Regulation of nuclear P 92.3 0.19 6.4E-06 42.3 5.5 102 47-158 8-114 (135)
29 2qk2_A LP04448P; mini spindles 92.0 1.4 4.6E-05 39.8 11.4 93 63-158 27-128 (242)
30 2qk1_A Protein STU2; STU2P, XM 90.0 3.6 0.00012 37.9 12.4 95 62-159 27-135 (249)
31 2qk1_A Protein STU2; STU2P, XM 88.6 2.6 9E-05 38.8 10.3 78 82-161 144-224 (249)
32 2km4_A Regulator of TY1 transp 88.2 1.6 5.3E-05 37.2 7.9 90 68-158 22-116 (142)
33 3f1i_H Hepatocyte growth facto 87.5 3.8 0.00013 32.7 8.9 69 230-301 5-75 (98)
34 2qk2_A LP04448P; mini spindles 87.3 6.3 0.00021 35.2 11.9 76 81-159 130-207 (242)
35 3b2a_A TON_1937, putative unch 85.6 4.4 0.00015 38.0 9.8 94 83-178 32-126 (265)
36 4ffb_C Protein STU2; tubulin f 83.1 3.7 0.00013 37.9 8.4 75 81-157 136-212 (278)
37 3dad_A FH1/FH2 domain-containi 82.1 27 0.00093 34.0 14.2 162 8-181 119-307 (339)
38 4ffb_C Protein STU2; tubulin f 78.5 4.1 0.00014 37.6 6.9 72 85-158 56-133 (278)
39 2of3_A ZYG-9; multifunctional 76.6 8 0.00027 36.5 8.3 96 62-159 57-163 (266)
40 4db8_A Armadillo-repeat protei 76.0 8.4 0.00029 34.0 8.0 70 85-156 97-166 (252)
41 4db6_A Armadillo repeat protei 75.5 8.7 0.0003 32.9 7.8 70 85-156 139-208 (210)
42 4hxt_A De novo protein OR329; 73.0 13 0.00043 32.4 8.4 71 84-157 44-115 (252)
43 3clj_A Protein NRD1; CTD-inter 72.9 5.1 0.00017 35.0 5.4 78 81-158 38-130 (157)
44 4hxt_A De novo protein OR329; 69.8 34 0.0012 29.5 10.5 72 85-158 171-242 (252)
45 4db6_A Armadillo repeat protei 68.8 20 0.00068 30.5 8.5 70 85-156 97-166 (210)
46 1xqr_A HSPBP1 protein; armadil 67.3 19 0.00066 33.9 8.7 70 84-156 167-237 (296)
47 4db8_A Armadillo-repeat protei 63.1 14 0.00049 32.4 6.6 70 85-156 139-208 (252)
48 2bpt_A Importin beta-1 subunit 56.9 62 0.0021 33.8 11.2 91 83-175 638-728 (861)
49 1hu3_A EIF4GII; heat repeat, t 55.3 43 0.0015 30.9 8.6 86 65-154 147-236 (260)
50 3f1i_S STAM-1, signal transduc 54.7 69 0.0024 24.5 9.4 64 243-309 12-76 (77)
51 3grl_A General vesicular trans 53.5 22 0.00075 37.7 6.8 106 69-180 111-222 (651)
52 2vgl_B AP-2 complex subunit be 53.5 71 0.0024 32.6 10.7 72 82-158 119-190 (591)
53 1ibr_B P95, importin beta-1 su 51.6 40 0.0014 32.1 8.0 75 83-158 127-204 (462)
54 2z6h_A Catenin beta-1, beta-ca 50.7 44 0.0015 34.4 8.7 72 84-157 98-169 (644)
55 1jdh_A Beta-catenin; beta-cate 49.6 58 0.002 31.8 9.0 72 84-157 101-172 (529)
56 2jdq_A Importin alpha-1 subuni 48.5 60 0.0021 30.8 8.8 70 85-156 235-304 (450)
57 1xqr_A HSPBP1 protein; armadil 48.1 21 0.00073 33.6 5.3 70 85-156 82-153 (296)
58 1qgr_A Protein (importin beta 46.4 1.1E+02 0.0039 31.8 11.2 77 83-160 648-725 (876)
59 1ibr_B P95, importin beta-1 su 46.2 81 0.0028 29.9 9.3 76 83-161 365-441 (462)
60 3ltm_A Alpha-REP4; protein eng 46.0 72 0.0024 27.1 8.1 97 39-155 12-108 (211)
61 2z6g_A B-catenin; FULL-length, 45.5 56 0.0019 34.8 8.7 71 85-157 235-305 (780)
62 1w63_A Adapter-related protein 43.3 69 0.0024 33.0 8.8 86 63-155 289-377 (618)
63 2jdq_A Importin alpha-1 subuni 43.2 82 0.0028 29.8 8.8 71 85-157 277-347 (450)
64 4b8j_A Importin subunit alpha- 43.1 97 0.0033 30.5 9.6 106 48-156 76-188 (528)
65 4b8j_A Importin subunit alpha- 42.5 79 0.0027 31.2 8.8 72 83-156 243-314 (528)
66 2vgl_A Adaptor protein complex 41.7 1.1E+02 0.0039 31.6 10.1 80 71-157 98-177 (621)
67 3ltj_A Alpharep-4; protein eng 40.4 1.3E+02 0.0045 25.1 8.9 26 84-109 76-101 (201)
68 1qgr_A Protein (importin beta 40.4 1.9E+02 0.0067 30.0 11.8 76 83-161 365-441 (876)
69 1wa5_B Importin alpha subunit; 40.0 54 0.0019 32.5 7.1 71 85-157 300-370 (530)
70 1b3u_A Protein (protein phosph 40.0 90 0.0031 30.7 8.7 73 83-160 440-512 (588)
71 1jdh_A Beta-catenin; beta-cate 39.1 57 0.002 31.8 7.1 73 83-155 265-337 (529)
72 1w63_A Adapter-related protein 38.4 64 0.0022 33.3 7.6 42 69-110 92-133 (618)
73 2bpt_A Importin beta-1 subunit 38.1 2.9E+02 0.0098 28.6 12.7 89 70-160 437-532 (861)
74 4fdd_A Transportin-1; heat rep 36.2 86 0.0029 33.2 8.3 89 83-172 669-759 (852)
75 3ul1_B Importin subunit alpha- 35.5 1.5E+02 0.005 29.5 9.5 71 83-155 231-301 (510)
76 3ibv_A Exportin-T; karyopherin 34.4 3.1E+02 0.01 30.1 12.6 105 47-154 7-116 (980)
77 1b3u_A Protein (protein phosph 34.4 79 0.0027 31.1 7.2 66 84-154 519-584 (588)
78 3ltm_A Alpha-REP4; protein eng 34.3 2.1E+02 0.0071 24.0 10.7 97 40-156 44-140 (211)
79 2vso_E Eukaryotic initiation f 34.2 2.2E+02 0.0076 26.3 10.0 84 66-153 175-275 (284)
80 1u6g_C TIP120 protein, CAND1; 34.0 1E+02 0.0035 34.2 8.8 73 85-158 435-507 (1230)
81 3dad_A FH1/FH2 domain-containi 33.5 1.4E+02 0.0049 28.9 8.6 59 88-146 258-325 (339)
82 1wa5_B Importin alpha subunit; 33.4 1.5E+02 0.0053 29.1 9.3 71 85-157 384-457 (530)
83 4fdd_A Transportin-1; heat rep 32.7 2.1E+02 0.007 30.2 10.6 76 83-160 399-474 (852)
84 3ltj_A Alpharep-4; protein eng 31.5 2.2E+02 0.0077 23.6 10.4 95 41-155 71-165 (201)
85 2vgl_A Adaptor protein complex 31.3 97 0.0033 32.1 7.6 68 83-155 328-396 (621)
86 2z6h_A Catenin beta-1, beta-ca 31.1 96 0.0033 31.8 7.5 70 84-155 14-84 (644)
87 1te4_A Conserved protein MTH18 30.8 1.7E+02 0.0059 22.9 7.6 74 63-151 54-127 (131)
88 3tpo_A Importin subunit alpha- 30.6 1.9E+02 0.0066 28.7 9.5 72 83-156 250-321 (529)
89 2of3_A ZYG-9; multifunctional 30.5 1.5E+02 0.005 27.7 7.9 69 81-156 164-235 (266)
90 3ul1_B Importin subunit alpha- 29.7 2E+02 0.0068 28.5 9.4 68 85-154 359-427 (510)
91 3fx7_A Putative uncharacterize 27.9 2.2E+02 0.0076 22.4 7.8 65 229-296 20-84 (94)
92 3tt9_A Plakophilin-2; cell adh 27.5 1.3E+02 0.0044 27.3 6.9 70 86-157 10-81 (233)
93 2x1g_F Cadmus; transport prote 27.1 1.4E+02 0.0048 32.1 8.1 83 71-157 533-615 (971)
94 3tt9_A Plakophilin-2; cell adh 26.3 1.4E+02 0.0049 27.0 6.9 70 85-156 53-123 (233)
95 3nmw_A APC variant protein; AR 26.3 1.4E+02 0.0048 28.6 7.3 70 85-155 128-198 (354)
96 3now_A UNC-45 protein, SD10334 25.5 5E+02 0.017 28.0 12.1 71 86-156 332-407 (810)
97 3tpo_A Importin subunit alpha- 25.5 2.6E+02 0.0089 27.7 9.4 68 85-154 378-446 (529)
98 1u6g_C TIP120 protein, CAND1; 25.2 5.3E+02 0.018 28.3 12.6 75 82-159 131-206 (1230)
99 1xm9_A Plakophilin 1; armadill 24.3 1.4E+02 0.0049 29.2 7.1 69 86-157 4-73 (457)
100 2dal_A Protein KIAA0794; FAS a 23.5 1.1E+02 0.0039 21.8 4.5 36 271-306 17-53 (62)
101 2vgl_B AP-2 complex subunit be 22.9 2.7E+02 0.0093 28.1 9.1 70 49-119 238-317 (591)
102 4e17_B Catenin alpha-1; four h 22.9 98 0.0034 20.6 3.6 25 256-280 11-35 (40)
103 3ayh_A DNA-directed RNA polyme 22.7 96 0.0033 25.9 4.6 52 69-120 57-120 (136)
104 3tjz_B Coatomer subunit gamma; 21.9 65 0.0022 31.4 3.8 30 86-115 178-207 (355)
105 2ii0_A SOS-1, SON of sevenless 21.4 5E+02 0.017 25.9 10.5 85 47-136 46-160 (490)
106 2z6g_A B-catenin; FULL-length, 20.3 1.2E+02 0.0042 32.1 6.0 74 82-155 397-470 (780)
107 3vld_A DNA mismatch repair pro 20.3 3.1E+02 0.011 28.0 8.5 90 19-109 17-141 (500)
108 3gjx_A Exportin-1; transport, 20.1 2.7E+02 0.0092 31.1 8.8 100 47-151 29-135 (1073)
No 1
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=7.1e-45 Score=326.68 Aligned_cols=149 Identities=30% Similarity=0.492 Sum_probs=141.3
Q ss_pred HhhcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch
Q 016112 39 KELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKA 118 (395)
Q Consensus 39 ~~~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~ 118 (395)
|+||+ ++|++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+|+||++|++||+|||+||+|||++
T Consensus 8 M~~~~-~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~ 86 (163)
T 1x5b_A 8 MPLFT-ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKI 86 (163)
T ss_dssp CCCCC-CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCcC-CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 45787 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hH-HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCCCCCCCCC
Q 016112 119 FS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNES 189 (395)
Q Consensus 119 F~-eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~FP~~~~~s 189 (395)
|| +|++++|+++|++++. +.+++.||+||+++|+.|+++|+.++++..|.++|+.||++||.||+.+..+
T Consensus 87 Fh~evas~~Fl~el~~l~~-~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~~ 157 (163)
T 1x5b_A 87 FHLEVCSRDFATEVRAVIK-NKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQT 157 (163)
T ss_dssp HHHHHTSHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTTCCCCCCSSCC
T ss_pred HHHHHhhHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 98 9999999999999997 4467899999999999999999999999999999999999999999987543
No 2
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=3.2e-44 Score=314.92 Aligned_cols=137 Identities=29% Similarity=0.527 Sum_probs=133.2
Q ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHh
Q 016112 45 PNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVA 123 (395)
Q Consensus 45 ~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eia 123 (395)
+||++++|++||++.+.++||++|++|||+||+++.+|++|+|+|+|||+|+||++|++||+|||+||+|||++|| +|+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~eva 82 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVC 82 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHS
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred hHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCCC
Q 016112 124 AERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 183 (395)
Q Consensus 124 s~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~FP 183 (395)
+++|+++|+++++. +++.||+|++++|+.|+.+|+++++++.|.++|++||++||.||
T Consensus 83 s~~Fl~el~~l~~~--~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 83 SRDFASEVSNVLNK--GHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp SHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHccCcCc
Confidence 99999999999964 56799999999999999999999999999999999999999998
No 3
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=1.2e-43 Score=320.95 Aligned_cols=158 Identities=22% Similarity=0.384 Sum_probs=134.4
Q ss_pred HhhcCC--CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 016112 39 KELFQG--PNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCE 116 (395)
Q Consensus 39 ~~~f~~--~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG 116 (395)
||+|.. +++++++|++||++.+.++||++|++|||+||+++.+|++|+|+|+|||+|+||++|++||+|||+||+|||
T Consensus 3 mg~~~~~~~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG 82 (171)
T 1juq_A 3 MGSMAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCG 82 (171)
T ss_dssp ---------CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH
T ss_pred cccCCCCCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC
Confidence 566665 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhH-HHhhHHHHHHHHhhhcC----CCcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCC--CCCCCCC
Q 016112 117 KAFS-EVAAERVLDEMVKLIDD----PQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRF--PGRDNES 189 (395)
Q Consensus 117 ~~F~-eias~~Fl~eLvkli~~----~~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~F--P~~~~~s 189 (395)
++|| +|++++|+++|++++++ +.++..||+|||++|+.|+.+|+. .+.|.++|+.||++||.| |..+.+
T Consensus 83 ~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~---~~~i~~~y~~Lk~~G~~f~~P~~~~~- 158 (171)
T 1juq_A 83 RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE---EAKIKDAYHMLKRQGIVQSDPPIPVD- 158 (171)
T ss_dssp HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTSCSSCCCBCCC-
T ss_pred HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHCCCCCCCCCCCcc-
Confidence 9998 99999999999999975 356789999999999999999976 467999999999999998 665533
Q ss_pred CCCccCCCCCCC
Q 016112 190 LAPIFTPPRSVS 201 (395)
Q Consensus 190 ~api~tP~~s~~ 201 (395)
+++|+||.+.+
T Consensus 159 -~~~f~~p~~~~ 169 (171)
T 1juq_A 159 -RTLIPSPPPRP 169 (171)
T ss_dssp -TTCC-------
T ss_pred -ccCCCCCCCCC
Confidence 57899887654
No 4
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=7e-43 Score=311.95 Aligned_cols=146 Identities=34% Similarity=0.595 Sum_probs=136.2
Q ss_pred HhhcCC-C--ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhc
Q 016112 39 KELFQG-P--NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKN 114 (395)
Q Consensus 39 ~~~f~~-~--s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~-~~n~~vq~~AL~LLe~~VkN 114 (395)
|+||++ | ++++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+ ++|+++|++||+|||+||+|
T Consensus 5 m~f~~~~p~~s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkN 84 (157)
T 1elk_A 5 SDFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKN 84 (157)
T ss_dssp CCCCCSCGGGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCcHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 467766 2 6899999999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred ccchhH-HHhhHHHHHH-HHhhhcCC-CcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCCCC
Q 016112 115 CEKAFS-EVAAERVLDE-MVKLIDDP-QTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPG 184 (395)
Q Consensus 115 cG~~F~-eias~~Fl~e-Lvkli~~~-~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~FP~ 184 (395)
||++|| +|++++|+++ |++++.++ .++..||+||+++|+.|+.+|+.++.++.|.++|+.||++||.||.
T Consensus 85 cG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 85 CGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp SCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCCC
T ss_pred hCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 999998 8999999999 89999654 3456899999999999999999999999999999999999999994
No 5
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=2.4e-42 Score=305.57 Aligned_cols=138 Identities=21% Similarity=0.365 Sum_probs=130.0
Q ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhhH
Q 016112 47 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAE 125 (395)
Q Consensus 47 ~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias~ 125 (395)
+++++|++||++.+.+|||++|++|||+||+++.+|++|+|+|+|||+|+||++|++||+|||+||+|||++|| +|+++
T Consensus 1 s~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~ 80 (148)
T 1mhq_A 1 SLELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF 80 (148)
T ss_dssp CHHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred CHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhhhcCC----CcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCCCCCCC
Q 016112 126 RVLDEMVKLIDDP----QTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDN 187 (395)
Q Consensus 126 ~Fl~eLvkli~~~----~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~FP~~~~ 187 (395)
+|+++|+++++++ .++..||+|||++|+.|+.+|+++ |.|.++|++|+++||.||+.+.
T Consensus 81 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~---p~i~~~y~~Lk~~G~~Fp~~~~ 143 (148)
T 1mhq_A 81 RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED---IKIRDAYQMLKKQGIIKQDPKL 143 (148)
T ss_dssp HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTSSCSCCCC
T ss_pred HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC---chHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999863 467899999999999999999764 5699999999999999997653
No 6
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=2e-41 Score=319.25 Aligned_cols=147 Identities=33% Similarity=0.564 Sum_probs=136.1
Q ss_pred hhcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh
Q 016112 40 ELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF 119 (395)
Q Consensus 40 ~~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F 119 (395)
+||.++++++++|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+++||++|++||+|||+||+|||++|
T Consensus 1 ~m~~~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 1 SMGRGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp ------CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCCCCCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCCCCCCC
Q 016112 120 S-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDN 187 (395)
Q Consensus 120 ~-eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~FP~~~~ 187 (395)
| +|++++|+++|++++. +.+++.||+|||++|+.|+++|++++.|+.|.++|+.||++||.||+.+.
T Consensus 81 ~~eias~~fl~~l~~l~~-~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~ 148 (226)
T 3zyq_A 81 HDEVANKQTMEELKDLLK-RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKE 148 (226)
T ss_dssp HHHHSSHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHTCCCCCCCG
T ss_pred HHhhccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCCcccchh
Confidence 8 9999999999999996 45678999999999999999999999999999999999999999998754
No 7
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=3.5e-41 Score=298.25 Aligned_cols=134 Identities=28% Similarity=0.423 Sum_probs=128.0
Q ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHh
Q 016112 45 PNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVA 123 (395)
Q Consensus 45 ~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eia 123 (395)
+++++++|++||++.+.+|||++|++|||+||+++.+|++|+|+|+|||+|+||++|++||+|||+||+|||++|| +|+
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia 88 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVG 88 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred hHHHHHHHHhhhcCC----CcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCC
Q 016112 124 AERVLDEMVKLIDDP----QTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIR 181 (395)
Q Consensus 124 s~~Fl~eLvkli~~~----~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~ 181 (395)
+++|+++|+++++++ +++..||+|||++|+.|+.+|+++ |.|.++|++||++||.
T Consensus 89 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~---p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 89 KFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE---VKIAEAYQMLKKQGIV 147 (149)
T ss_dssp SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC---chHHHHHHHHHHCcCc
Confidence 999999999999864 567899999999999999999764 6799999999999985
No 8
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=294.28 Aligned_cols=135 Identities=27% Similarity=0.485 Sum_probs=127.6
Q ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhH-HH
Q 016112 45 PNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIML-KSPRIQYLALVLLETVVKNCEKAFS-EV 122 (395)
Q Consensus 45 ~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~-~n~~vq~~AL~LLe~~VkNcG~~F~-ei 122 (395)
+|+++++|++||++.+.+|||++|++|||+||+++.+|++|+|+|+|||++ +|+++|++||+|||+||+|||++|| +|
T Consensus 14 ~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 14 ATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp GSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 489999999999999999999999999999999999999999999999995 6999999999999999999999998 99
Q ss_pred hhHHHHHH-HHhhhcCC-CcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcC
Q 016112 123 AAERVLDE-MVKLIDDP-QTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRG 179 (395)
Q Consensus 123 as~~Fl~e-Lvkli~~~-~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~G 179 (395)
++++|+++ |+++++++ .++..||+|||++|+.|+.+|++++.++.|.++|++|+++|
T Consensus 94 ask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 94 VKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDLVKKG 152 (152)
T ss_dssp SSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHHHHHHHC-
T ss_pred HhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHCc
Confidence 99999998 99999865 34558999999999999999999999999999999999998
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=4.1e-38 Score=295.35 Aligned_cols=150 Identities=27% Similarity=0.476 Sum_probs=138.1
Q ss_pred hcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH
Q 016112 41 LFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS 120 (395)
Q Consensus 41 ~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~ 120 (395)
||+ ++++++|++||++.+.+|||++|++|||+||+++++|++|+|+|+|||+++||++|++||+|||+||+|||++||
T Consensus 1 mf~--~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~ 78 (220)
T 1dvp_A 1 MFR--SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVH 78 (220)
T ss_dssp CCC--SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCc--chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHH
Confidence 465 469999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCCCCCCCCCCCCccC
Q 016112 121 -EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFT 195 (395)
Q Consensus 121 -eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~FP~~~~~s~api~t 195 (395)
+|++++|+++|++++.+ .++..||+|+|++|+.|+.+|++++.++.|.++|+.|+.+|+.||..... +++++
T Consensus 79 ~eva~~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~Lk~~G~~FP~~~e~--~a~f~ 151 (220)
T 1dvp_A 79 EEVFTKENCEMFSSFLES-TPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREA--DAMFT 151 (220)
T ss_dssp HHHSSHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHTTCCCCCCCC-----CCC
T ss_pred HHHHhHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCccccccccc--ccccc
Confidence 99999999999999976 34679999999999999999999999999999999999999999987432 34565
No 10
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.82 E-value=1.4e-20 Score=171.24 Aligned_cols=90 Identities=27% Similarity=0.430 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC--cc-hhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHH
Q 016112 227 TKEAFDVARNSIELLSTVLSSSPQQD--AL-QDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTK 303 (395)
Q Consensus 227 ~k~~l~~a~~n~~LL~emL~~~~~~e--~~-~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL~k 303 (395)
+..+|++|++|++||++||+++.+++ .. ++|++++||++||++|++|++||+.+++||+.|+++|++||+|+++|.+
T Consensus 74 ~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~k 153 (186)
T 1oxz_A 74 RVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINL 153 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHH
Confidence 34789999999999999999986643 34 7899999999999999999999999888999999999999999999999
Q ss_pred HHhhcCCCCCCCC
Q 016112 304 YEELKKPSGAPAE 316 (395)
Q Consensus 304 Ye~l~~~~~~~~~ 316 (395)
|+++++|+.....
T Consensus 154 Y~~~~~g~~~~~~ 166 (186)
T 1oxz_A 154 YKQLVRGEEVNGD 166 (186)
T ss_dssp HTTHHHHCC----
T ss_pred HHHHhcCCCCCcc
Confidence 9999999876553
No 11
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.81 E-value=8.7e-20 Score=151.49 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC--cchhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHH
Q 016112 226 QTKEAFDVARNSIELLSTVLSSSPQQD--ALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTK 303 (395)
Q Consensus 226 q~k~~l~~a~~n~~LL~emL~~~~~~e--~~~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL~k 303 (395)
++..+|++|++|++||++||+++.+++ ..++|++++||++||++||+|++||+.+ +||++|+++|++||+|+++|.+
T Consensus 10 k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~-~dee~l~~lL~~ND~L~~vl~r 88 (103)
T 1wrd_A 10 KLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQI-ANEQLTEELLIVNDNLNNVFLR 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHhhHHHHHHHHH
Confidence 356899999999999999999986543 4678999999999999999999999976 7899999999999999999999
Q ss_pred HHhhcCCCCCCC
Q 016112 304 YEELKKPSGAPA 315 (395)
Q Consensus 304 Ye~l~~~~~~~~ 315 (395)
|++++++..+..
T Consensus 89 y~~~~~~~~~~~ 100 (103)
T 1wrd_A 89 HERFERFRTGQT 100 (103)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHhcCCCCCC
Confidence 999998876654
No 12
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.80 E-value=2.1e-19 Score=159.37 Aligned_cols=90 Identities=27% Similarity=0.430 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCc--c-hhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHH
Q 016112 227 TKEAFDVARNSIELLSTVLSSSPQQDA--L-QDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTK 303 (395)
Q Consensus 227 ~k~~l~~a~~n~~LL~emL~~~~~~e~--~-~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL~k 303 (395)
+..+|++|++|++||++||+++++++. . ++|++++||++||++||+|++||+.+++||+.|+++|++||+|+++|.+
T Consensus 58 ~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~k 137 (158)
T 1naf_A 58 RVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINL 137 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHH
Confidence 457899999999999999999876543 3 7799999999999999999999999888899999999999999999999
Q ss_pred HHhhcCCCCCCCC
Q 016112 304 YEELKKPSGAPAE 316 (395)
Q Consensus 304 Ye~l~~~~~~~~~ 316 (395)
|+++++|...+..
T Consensus 138 Y~~~~~g~~~~~~ 150 (158)
T 1naf_A 138 YKQLVRGEEVNGD 150 (158)
T ss_dssp HHHHHC-------
T ss_pred HHHHhcCCCCCCc
Confidence 9999999876554
No 13
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.78 E-value=2.4e-19 Score=150.53 Aligned_cols=89 Identities=22% Similarity=0.376 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC--cchhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHH
Q 016112 228 KEAFDVARNSIELLSTVLSSSPQQD--ALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYE 305 (395)
Q Consensus 228 k~~l~~a~~n~~LL~emL~~~~~~e--~~~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL~kYe 305 (395)
..+|+++++|++||++||.++.+++ ..+.|+++|||.+|++|||+|++||+.+.+||+.|++||++||+|+++|.+|+
T Consensus 7 ~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi~rY~ 86 (111)
T 1wr6_A 7 LHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYK 86 (111)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHHHHHH
Confidence 3579999999999999999986543 34679999999999999999999999987788999999999999999999999
Q ss_pred hhcCCCCCCCC
Q 016112 306 ELKKPSGAPAE 316 (395)
Q Consensus 306 ~l~~~~~~~~~ 316 (395)
++++|+...+.
T Consensus 87 ~~~~g~~~~~~ 97 (111)
T 1wr6_A 87 TIIEGQVINGE 97 (111)
T ss_dssp HTTTCC-----
T ss_pred HHhcCCCCCCc
Confidence 99999887664
No 14
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.77 E-value=1.5e-18 Score=151.39 Aligned_cols=87 Identities=28% Similarity=0.436 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCc--c-hhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHH
Q 016112 227 TKEAFDVARNSIELLSTVLSSSPQQDA--L-QDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTK 303 (395)
Q Consensus 227 ~k~~l~~a~~n~~LL~emL~~~~~~e~--~-~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL~k 303 (395)
+..+|++|++|++||++||+++++++. . ++|++++||++|+++||+|++||+.+++||+.|+++|++||+|+++|.+
T Consensus 49 ~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~ln~vl~k 128 (140)
T 1o3x_A 49 RVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINL 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHH
Confidence 457899999999999999999876543 3 6799999999999999999999998888899999999999999999999
Q ss_pred HHhhcCCCCC
Q 016112 304 YEELKKPSGA 313 (395)
Q Consensus 304 Ye~l~~~~~~ 313 (395)
|+++++|...
T Consensus 129 Y~~~~~g~~~ 138 (140)
T 1o3x_A 129 YKQLVRGEEV 138 (140)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHhcCCCC
Confidence 9999998764
No 15
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=97.99 E-value=3.9e-05 Score=66.58 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=78.3
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHH
Q 016112 49 EKLVEDATSEALEEPDWAMNLDLCDMINTEKIS-SVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERV 127 (395)
Q Consensus 49 ~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~-~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~F 127 (395)
..+|.+||+..-..+--.+.-||+++....+.. ..+.+..|-|||+++++++.+-||.||+.|++|++..|..-+.+..
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~ 92 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS 92 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH
Confidence 567999999987766677888999999887544 5899999999999999999999999999999999999963333221
Q ss_pred HHHHHhhhcC---C-C------cccchHHHHHHHHHHH
Q 016112 128 LDEMVKLIDD---P-Q------TVVNNRNKALVMIEAW 155 (395)
Q Consensus 128 l~eLvkli~~---~-~------t~~~Vk~KiL~lI~~W 155 (395)
.. ++.+.. + . ....||+++-+++..-
T Consensus 93 -~~-Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 93 -VA-VRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp -HH-HHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 12 333321 1 1 1146888887776544
No 16
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.97 E-value=2.5e-05 Score=68.48 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=89.7
Q ss_pred hHHHHHhhcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 016112 34 MSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIML--KSPRIQYLALVLLETV 111 (395)
Q Consensus 34 ~~~~~~~~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~--~n~~vq~~AL~LLe~~ 111 (395)
+..+++-...+-|+++..|..||+...-.|.-..+-+|++.-.. ...-.+.+..|.|||.. ++-++.+-||.||+.|
T Consensus 10 ~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyL 88 (148)
T 1inz_A 10 LRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYL 88 (148)
T ss_dssp CCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTS-SHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHH
Confidence 33344455555699999999999999888888889999998776 35668999999999985 5889999999999999
Q ss_pred HhcccchhH-HHhhHH-HHHHHHhh--hcCC--CcccchHHHHHHHHHHH
Q 016112 112 VKNCEKAFS-EVAAER-VLDEMVKL--IDDP--QTVVNNRNKALVMIEAW 155 (395)
Q Consensus 112 VkNcG~~F~-eias~~-Fl~eLvkl--i~~~--~t~~~Vk~KiL~lI~~W 155 (395)
++|+..+|- ++-..- .+..|... +.+. ..-..||+|+-.++.--
T Consensus 89 l~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL 138 (148)
T 1inz_A 89 IKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALL 138 (148)
T ss_dssp HHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHh
Confidence 999988884 443332 35555552 3212 22347888877776544
No 17
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.80 E-value=0.00041 Score=62.30 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=84.3
Q ss_pred HHhhcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHhc
Q 016112 38 MKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRI-M--LKSPRIQYLALVLLETVVKN 114 (395)
Q Consensus 38 ~~~~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL-~--~~n~~vq~~AL~LLe~~VkN 114 (395)
++-..-+-|+++..|..||+...-.|.-..+-+||+.-... ..-.+.+..|.||| . .++-+..+-||+|||.|++|
T Consensus 25 ~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~-~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~n 103 (176)
T 1xgw_A 25 ATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY-EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRN 103 (176)
T ss_dssp ---CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT-TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 34444446899999999999988888888999999887654 56789999999997 4 47999999999999999999
Q ss_pred ccchhH-HHhhHHHHHHHHhhh-----cCCCcc--cchHHHHHHHHHHHH
Q 016112 115 CEKAFS-EVAAERVLDEMVKLI-----DDPQTV--VNNRNKALVMIEAWG 156 (395)
Q Consensus 115 cG~~F~-eias~~Fl~eLvkli-----~~~~t~--~~Vk~KiL~lI~~W~ 156 (395)
+..+|- ++ ++.+..+..|- .+...+ ..||+|+-+++.--.
T Consensus 104 Gse~vv~~~--r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 104 GSERVVTSA--REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp SCHHHHHHH--HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH--HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHC
Confidence 998884 44 23332332222 111222 369988887776554
No 18
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.72 E-value=0.0002 Score=62.34 Aligned_cols=111 Identities=22% Similarity=0.249 Sum_probs=82.5
Q ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccchhH-H
Q 016112 45 PNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIML--KSPRIQYLALVLLETVVKNCEKAFS-E 121 (395)
Q Consensus 45 ~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~--~n~~vq~~AL~LLe~~VkNcG~~F~-e 121 (395)
-|+++..|..||+...-.|.-..+-+|++.-.. ...-.+.+..|.|||.. ++-++.+-||+||+.|++|+..+|- .
T Consensus 3 ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~ 81 (144)
T 1eyh_A 3 YSEAEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQ 81 (144)
T ss_dssp CCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHH
Confidence 478999999999999888888899999988664 34567899999999986 4888999999999999999988884 4
Q ss_pred HhhHH-HHHHHHhh--hcCCCc--ccchHHHHHHHHHHHH
Q 016112 122 VAAER-VLDEMVKL--IDDPQT--VVNNRNKALVMIEAWG 156 (395)
Q Consensus 122 ias~~-Fl~eLvkl--i~~~~t--~~~Vk~KiL~lI~~W~ 156 (395)
+-+.- .+..|... +.+... -..||+|+-.++.--.
T Consensus 82 ~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 82 CKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHC
Confidence 43322 23334432 121111 2368888877776554
No 19
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=97.68 E-value=0.00046 Score=59.99 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 78 EKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 78 ~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
....++..+.+|.++|+.-+|..-+.+|-|+|..|+|||..|.......+.+.+...+.. .+..+|.|+..|+..|.+
T Consensus 37 ~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~--~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 37 NISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLL--VDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp TGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHT--SCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhC
Confidence 344789999999999999999999999999999999999999633333333333333322 356899999999999998
Q ss_pred hhcC
Q 016112 158 STSE 161 (395)
Q Consensus 158 ~f~~ 161 (395)
.++.
T Consensus 115 ~~~~ 118 (144)
T 1sz9_A 115 PNDT 118 (144)
T ss_dssp GGGC
T ss_pred cccC
Confidence 8653
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.45 E-value=0.0011 Score=58.17 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhcccchhH
Q 016112 44 GPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIML---KSPRIQYLALVLLETVVKNCEKAFS 120 (395)
Q Consensus 44 ~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~---~n~~vq~~AL~LLe~~VkNcG~~F~ 120 (395)
+-|+++..|..||+...-.|.-...-+|++.--. ...-.+.+..|.|||.. ++-+..+-||+|||.|++|+..+|-
T Consensus 8 ~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv 86 (150)
T 3onk_A 8 NYTEMEGKVREATNNEPWGASSTLMDQISQGTYN-FREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFI 86 (150)
T ss_dssp CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999999988778888888888877553 23457899999999963 4899999999999999999988884
Q ss_pred -HHhhHHHH-HHHHh--hhcCC--CcccchHHHHHHHHHHHHH
Q 016112 121 -EVAAERVL-DEMVK--LIDDP--QTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 121 -eias~~Fl-~eLvk--li~~~--~t~~~Vk~KiL~lI~~W~~ 157 (395)
++-...++ ..|.. .+.+. ..-..||+|+-+++.-..+
T Consensus 87 ~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 87 DDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp HHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcC
Confidence 54333322 22322 11111 1124789888888766653
No 21
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.003 Score=50.68 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=58.1
Q ss_pred HHHHHHHHHHh---cCCCCCcchhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHhhcCC
Q 016112 236 NSIELLSTVLS---SSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKKP 310 (395)
Q Consensus 236 ~n~~LL~emL~---~~~~~e~~~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL~kYe~l~~~ 310 (395)
.++.++...+. ..|+.+...++-+++||.++-.+|||+.+.+.... .-..+|+.+|+.|..+..-|+++...
T Consensus 9 d~I~lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~---~K~~~L~~mn~Kls~a~rlYD~lLE~ 83 (91)
T 2pjw_V 9 DSIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKA---QKYNTLIEMNGKISEIMNIYDRLLEQ 83 (91)
T ss_dssp HHHHHHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554443 34666778899999999999999999999999874 45779999999999999999998653
No 22
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0026 Score=50.71 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCC-C---CcchhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q 016112 236 NSIELLSTVLSSSPQ-Q---DALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKKPS 311 (395)
Q Consensus 236 ~n~~LL~emL~~~~~-~---e~~~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL~kYe~l~~~~ 311 (395)
.++.-|-++|...++ + +..+++-+++||.+|-.+||+|.++|...+ .--.+|+.+|+.|.++-.-|+++...+
T Consensus 10 ~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kys---qKk~eL~~Ln~kl~~a~~~Yd~lle~s 86 (88)
T 2pjw_H 10 TTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYA---KEKEDMLSLRQVLANAERSYNQLMDRA 86 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555567776543 3 456889999999999999999999999874 235589999999999999999987643
No 23
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=95.89 E-value=0.036 Score=52.86 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=73.4
Q ss_pred cccchHHHHHhh---cCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 016112 30 GMSQMSFKMKEL---FQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALV 106 (395)
Q Consensus 30 ~~~~~~~~~~~~---f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~ 106 (395)
.+.|+.+.+... +. .+.++..|-+||+.....|+-..+-+|.-.....+.+..+.+++|.+|+..+|..|.+-||.
T Consensus 9 ~~~~~~~~~~~~~~~~~-~s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLi 87 (271)
T 3zyl_A 9 SGQSLTDRITAAQHSVT-GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLI 87 (271)
T ss_dssp ---CHHHHHHHHHHHHH-HHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred ccccHHHHHHHHHhccc-chHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344566654443 33 26799999999999988899888888888777777778999999999999999999999999
Q ss_pred HHHHHHhcccchhH
Q 016112 107 LLETVVKNCEKAFS 120 (395)
Q Consensus 107 LLe~~VkNcG~~F~ 120 (395)
++.-|+..+.+.|.
T Consensus 88 vlH~llreG~~~~l 101 (271)
T 3zyl_A 88 TTHHLMVYGNERFI 101 (271)
T ss_dssp HHHHHHHHSCHHHH
T ss_pred HHHHHHhcCCHHHH
Confidence 99999999877663
No 24
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=95.69 E-value=0.039 Score=46.48 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHH
Q 016112 67 MNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRN 146 (395)
Q Consensus 67 ~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~ 146 (395)
.|-.+...+-.....+.+.+..|.++|+...+..-+..|-|++.+++||+.+........|-..|..++..- .++.+|.
T Consensus 23 sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~-~~~~~~~ 101 (132)
T 4flb_A 23 SIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALV-KDPSVSK 101 (132)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTT-CSTTTHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh-CCHHHHH
Confidence 344444444444457899999999999988899999999999999999987664222333444444444321 1356789
Q ss_pred HHHHHHHHHHHh
Q 016112 147 KALVMIEAWGES 158 (395)
Q Consensus 147 KiL~lI~~W~~~ 158 (395)
|+..++..|.+.
T Consensus 102 kl~~ll~iW~~r 113 (132)
T 4flb_A 102 SVERIFKIWEDR 113 (132)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccC
Confidence 999999999874
No 25
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=95.48 E-value=0.064 Score=52.10 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=72.5
Q ss_pred cchHHHHHhh---cCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 016112 32 SQMSFKMKEL---FQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLL 108 (395)
Q Consensus 32 ~~~~~~~~~~---f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LL 108 (395)
.|+.+++... +. .+.++..|-+||+.....|.-..+-+|.......+.+..+.+++|.+||..+|..|.+-||.++
T Consensus 11 ~~~~~~~~~~~~~~~-~s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivl 89 (310)
T 3zym_A 11 QSLTDRITAAQHSVT-GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITT 89 (310)
T ss_dssp -CHHHHHHHHHHCCH-HHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhccc-ccHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 4455554333 33 2679999999999998889998888888877777677789999999999999999999999999
Q ss_pred HHHHhcccchhH
Q 016112 109 ETVVKNCEKAFS 120 (395)
Q Consensus 109 e~~VkNcG~~F~ 120 (395)
..|+..+.+.|.
T Consensus 90 H~llreG~~~~l 101 (310)
T 3zym_A 90 HHLMVYGNERFI 101 (310)
T ss_dssp HHHHHHSCHHHH
T ss_pred HHHHhcCCHHHH
Confidence 999999877663
No 26
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=95.21 E-value=0.11 Score=50.15 Aligned_cols=79 Identities=19% Similarity=0.110 Sum_probs=70.3
Q ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhh
Q 016112 46 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAA 124 (395)
Q Consensus 46 s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias 124 (395)
+.++..|-+||+.....|+--.+-+|....+..+....+.+++|.+|.+..|..|.+-||.++.-|+.-+.+.|. ++++
T Consensus 22 ~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~~~~l~~ 101 (299)
T 1hx8_A 22 QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLAS 101 (299)
T ss_dssp CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 579999999999998889999999998888887777899999999999999999999999999999999888774 5543
No 27
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=94.76 E-value=0.13 Score=44.37 Aligned_cols=95 Identities=12% Similarity=0.248 Sum_probs=65.7
Q ss_pred CCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHH---HhhHHHHHHHHhhhc
Q 016112 60 LEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSE---VAAERVLDEMVKLID 136 (395)
Q Consensus 60 l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~e---ias~~Fl~eLvkli~ 136 (395)
+..+-+..+-.+|.- .....+..+..|.++|+.-.|..-+-+|-|+|..++|++..+.+ .....|...|..++.
T Consensus 21 ~S~~~I~~LT~~a~~---~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~ 97 (145)
T 3d9j_A 21 ISKAKMTQITKAAIK---AIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQ 97 (145)
T ss_dssp CCHHHHHHHHHHHHH---TGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHH
Confidence 444445555555542 22367899999999999888889999999999999999984320 112335555555543
Q ss_pred CC-CcccchHHHHHHHHHHHHH
Q 016112 137 DP-QTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 137 ~~-~t~~~Vk~KiL~lI~~W~~ 157 (395)
.- ..++.+|.|+..|+.-|.+
T Consensus 98 ~~~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 98 NLYRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp HHTSSCGGGHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhcC
Confidence 20 1236889999999999985
No 28
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=92.32 E-value=0.19 Score=42.30 Aligned_cols=102 Identities=11% Similarity=0.169 Sum_probs=65.2
Q ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc---chhHHHh
Q 016112 47 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCE---KAFSEVA 123 (395)
Q Consensus 47 ~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG---~~F~eia 123 (395)
.+.+.+...|. ..+ .|-.+...+-.....+.+.+.+|.++|+...+...+..|-|++.+++||. ..|..
T Consensus 8 ~l~~~L~~L~~---s~~---sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~-- 79 (135)
T 4fu3_A 8 ALEKKLSELSN---SQQ---SVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTR-- 79 (135)
T ss_dssp HHHHHHHHCCS---STT---HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHH--
T ss_pred HHHHHHHHccc---cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHH--
Confidence 45566666653 222 34444444444445789999999999987777778899999999999994 34431
Q ss_pred hHHHHHHHHhhhcC--CCcccchHHHHHHHHHHHHHh
Q 016112 124 AERVLDEMVKLIDD--PQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 124 s~~Fl~eLvkli~~--~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
.|-..|..++.. +..+..+|.|+..++..|.+.
T Consensus 80 --~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 80 --EFESVLVDAFSHVAREADEGCKKPLERLLNIWQER 114 (135)
T ss_dssp --HHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 122222222221 112346788999999999873
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.96 E-value=1.4 Score=39.76 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=73.9
Q ss_pred ccHH----HHHHHHHHHhcCC----CCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHh
Q 016112 63 PDWA----MNLDLCDMINTEK----ISSVDLIRGIKKRI-MLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVK 133 (395)
Q Consensus 63 ~Dw~----~ileIcD~Ins~~----~~~keA~raIrKrL-~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvk 133 (395)
.||. .+..|+.+++..+ ..-.+.+++|+++| +..|++|...|+..|..+.+..|..|... -..++..|.+
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-~~~ilp~ll~ 105 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-ASACVPSLLE 105 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHH
Confidence 4675 6777888887621 23368899999999 59999999999999999999999988643 3468888888
Q ss_pred hhcCCCcccchHHHHHHHHHHHHHh
Q 016112 134 LIDDPQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 134 li~~~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
.+.++. ..||..+...+..+...
T Consensus 106 ~l~d~~--~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 106 KFKEKK--PNVVTALREAIDAIYAS 128 (242)
T ss_dssp GGGCCC--HHHHHHHHHHHHHHHTT
T ss_pred HHcCCC--HHHHHHHHHHHHHHHHc
Confidence 887653 57999999999888764
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.05 E-value=3.6 Score=37.86 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=72.1
Q ss_pred CccHH----HHHHHHH-HHhcCC-----CCH-HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhccc-chhH-HHhhHHH
Q 016112 62 EPDWA----MNLDLCD-MINTEK-----ISS-VDLIRGIKKRI-MLKSPRIQYLALVLLETVVKNCE-KAFS-EVAAERV 127 (395)
Q Consensus 62 ~~Dw~----~ileIcD-~Ins~~-----~~~-keA~raIrKrL-~~~n~~vq~~AL~LLe~~VkNcG-~~F~-eias~~F 127 (395)
+.+|. ...+|.. +++..+ .+. .+.+++|++.| +..|+.++..|+..|..+.+..+ +.|. ... ..+
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~-~~l 105 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV-SLV 105 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH-HHH
Confidence 34677 4556666 664421 122 58899999999 79999999999999999999988 7886 553 356
Q ss_pred HHHHHhhhcCCCcccchHHHHHHHHHHHHHhh
Q 016112 128 LDEMVKLIDDPQTVVNNRNKALVMIEAWGEST 159 (395)
Q Consensus 128 l~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f 159 (395)
+..|...+.++. ..|++.+...+..|.+..
T Consensus 106 lp~ll~~l~dkk--~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 106 FTPLLDRTKEKK--PSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHGGGCCC--HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHHHc
Confidence 777777777654 478899999999998875
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=88.63 E-value=2.6 Score=38.79 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc---hhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHh
Q 016112 82 SVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEK---AFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 82 ~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~---~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
....+..|..-|+++|+.+...+|..|..|+.+++. .|.......++..|.+++.+. +..||..+.+.+-.-...
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIKI 221 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH
Confidence 456777777778899999999999999999999984 354333357888888888764 568999998888887776
Q ss_pred hcC
Q 016112 159 TSE 161 (395)
Q Consensus 159 f~~ 161 (395)
+.+
T Consensus 222 vG~ 224 (249)
T 2qk1_A 222 FGM 224 (249)
T ss_dssp HCS
T ss_pred hCH
Confidence 654
No 32
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=88.25 E-value=1.6 Score=37.22 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccchhH-HHhh--HHHHHHHHhhhcCCCccc
Q 016112 68 NLDLCDMINTEKISSVDLIRGIKKRIMLK--SPRIQYLALVLLETVVKNCEKAFS-EVAA--ERVLDEMVKLIDDPQTVV 142 (395)
Q Consensus 68 ileIcD~Ins~~~~~keA~raIrKrL~~~--n~~vq~~AL~LLe~~VkNcG~~F~-eias--~~Fl~eLvkli~~~~t~~ 142 (395)
|-.+..-+-.....+.+.+..+.++|... ++...+.-|-|++-++.||-.+.. ++.. .+.+-++...+.. ..++
T Consensus 22 Iq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~-~~~~ 100 (142)
T 2km4_A 22 ISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQ-EFPR 100 (142)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHH-HSCH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH-cCCH
Confidence 33333334444557899999999999865 788888889999999999965432 3211 1233333322221 1356
Q ss_pred chHHHHHHHHHHHHHh
Q 016112 143 NNRNKALVMIEAWGES 158 (395)
Q Consensus 143 ~Vk~KiL~lI~~W~~~ 158 (395)
.++.|+..++.-|.+.
T Consensus 101 ~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 101 DLKKKLSRVVNILKER 116 (142)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc
Confidence 7899999999999874
No 33
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=87.53 E-value=3.8 Score=32.75 Aligned_cols=69 Identities=9% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhc-CC-CCCcchhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHH
Q 016112 230 AFDVARNSIELLSTVLSS-SP-QQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVL 301 (395)
Q Consensus 230 ~l~~a~~n~~LL~emL~~-~~-~~e~~~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL 301 (395)
-++..++.++++-+=+.+ .. +.....|..++.||.+.-.|.|++++||+.. |+.-...=.+.|.|.++=
T Consensus 5 f~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~---ee~R~~yE~LQDkL~qi~ 75 (98)
T 3f1i_H 5 FLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQL---DERRLYYEGLQDKLAQIR 75 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456677788887665543 32 3345567899999999999999999999987 344444455567666543
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=87.32 E-value=6.3 Score=35.23 Aligned_cols=76 Identities=11% Similarity=0.148 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch--hHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHh
Q 016112 81 SSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKA--FSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 81 ~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~--F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
+....+..|...|+++|+.+...++..|..|+.++++. |.... ..++..|..++.++ ...||..+.+.|..-...
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999998753 34322 37888899988765 357898888777665544
Q ss_pred h
Q 016112 159 T 159 (395)
Q Consensus 159 f 159 (395)
+
T Consensus 207 v 207 (242)
T 2qk2_A 207 M 207 (242)
T ss_dssp H
T ss_pred c
Confidence 3
No 35
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=85.59 E-value=4.4 Score=38.02 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcC-
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSE- 161 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~- 161 (395)
++++..|.+-|..+++.++++||.+|+-+.|-........--+++++.+++++..+ +..|.-+++.++...=+..+-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~--dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE--NEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST--THHHHHHHHHHHHHHHTTCCBC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHcCCCCC
Confidence 56888899999999999999999999999999766665555678999999999654 345555666666655443321
Q ss_pred CCChhhHHHHHHHHhhc
Q 016112 162 LRYLPVYEETYKSLRSR 178 (395)
Q Consensus 162 ~~~l~~i~~~Y~~Lk~~ 178 (395)
...+..+.++...+-.+
T Consensus 110 ~~~y~Kl~~aL~dlik~ 126 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLES 126 (265)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 11244445555444433
No 36
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=83.13 E-value=3.7 Score=37.87 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH--HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 81 SSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS--EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 81 ~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~--eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
.....+..|..-++++||++..-++..|..|+.+.|.... .-.-..++..+.+++.++ +..||+-++.++-.-+.
T Consensus 136 ~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 136 SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHG--DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCS--SHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHH
Confidence 4456677888888999999999999999999999775431 111223555566666654 57899877777655443
No 37
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=82.14 E-value=27 Score=34.05 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=94.9
Q ss_pred HHHHhhhhhhccchhhhhhhhccccchHHHHHhhcCC-CCh---------HHHHHHHHcCCCCCCccHHHHHHHHHHHhc
Q 016112 8 KVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKELFQG-PNP---------VEKLVEDATSEALEEPDWAMNLDLCDMINT 77 (395)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~s~---------~~~lIekATs~~l~~~Dw~~ileIcD~Ins 77 (395)
++.++=|+|.-+..+.-|.. .|+++.+|+. .+= +..+|.-.... ...-.+.++.-.-.+-.
T Consensus 119 ra~~iiekL~~~~~~~lr~a-------LfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~ 189 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRS-------LFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLML 189 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHH-------HHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcHHHHHH-------HHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHh
Confidence 56677788886666666664 8999998874 332 33344433222 11112222221111111
Q ss_pred CCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH----HH---hhHH---HHHHHHhhhcCC-Cc
Q 016112 78 EKI------SSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS----EV---AAER---VLDEMVKLIDDP-QT 140 (395)
Q Consensus 78 ~~~------~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~----ei---as~~---Fl~eLvkli~~~-~t 140 (395)
... .-.+.++-|..-+.+..+.|+..||.||..+|.++...|. ++ +.++ .+..|++++... ..
T Consensus 190 ~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~ 269 (339)
T 3dad_A 190 FVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA 269 (339)
T ss_dssp SHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred ccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence 100 0245566666667789999999999999999999965553 22 1222 366778888632 34
Q ss_pred ccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCC
Q 016112 141 VVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIR 181 (395)
Q Consensus 141 ~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~ 181 (395)
+.+++..++.||..-=...+ .-..+.++-..|..+|++
T Consensus 270 D~elq~~amtLIN~lL~~ap---d~d~~~di~d~Le~~gi~ 307 (339)
T 3dad_A 270 DPELLVYTVTLINKTLAALP---DQDSFYDVTDALEQQGME 307 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHCS---SHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHccHH
Confidence 66777778888876543332 223356667777777764
No 38
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=78.49 E-value=4.1 Score=37.58 Aligned_cols=72 Identities=11% Similarity=-0.012 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-----HHhhHHHHHHHH-hhhcCCCcccchHHHHHHHHHHHHHh
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-----EVAAERVLDEMV-KLIDDPQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-----eias~~Fl~eLv-kli~~~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
....++|.++..|..++..||.+|..++.++|..+. ...-..++..|+ |.+.+. ...+|..+++.+..|...
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL 133 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999986541 122334566555 434433 346788888888888753
No 39
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=76.65 E-value=8 Score=36.46 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=65.1
Q ss_pred CccHHHHHHHHHHHhcC-CCCHHHHHHH-------HHHHhcCCCHHHHHHHHHHHHHHHhcc---cchhHHHhhHHHHHH
Q 016112 62 EPDWAMNLDLCDMINTE-KISSVDLIRG-------IKKRIMLKSPRIQYLALVLLETVVKNC---EKAFSEVAAERVLDE 130 (395)
Q Consensus 62 ~~Dw~~ileIcD~Ins~-~~~~keA~ra-------IrKrL~~~n~~vq~~AL~LLe~~VkNc---G~~F~eias~~Fl~e 130 (395)
..||...++-+|.+... +..+++++.. +.-|+..+|+++...+|.+|..++.-- |++|++.-..-|+-.
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~ 136 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY 136 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45888778777776654 2245554443 355888999999999999999987554 556754333457777
Q ss_pred HHhhhcCCCcccchHHHHHHHHHHHHHhh
Q 016112 131 MVKLIDDPQTVVNNRNKALVMIEAWGEST 159 (395)
Q Consensus 131 Lvkli~~~~t~~~Vk~KiL~lI~~W~~~f 159 (395)
|+.-+-++ ...||+++..++..-..-+
T Consensus 137 LveKlGd~--k~~vR~~~r~il~~l~~v~ 163 (266)
T 2of3_A 137 LLLKTGEA--KDNMRTSVRDIVNVLSDVV 163 (266)
T ss_dssp HHHGGGCS--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC--hHHHHHHHHHHHHHHHHHC
Confidence 76655433 3578988888877765543
No 40
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=75.96 E-value=8.4 Score=33.99 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
++..|.+-|.+.++.++..|+..|-.+..+.......+.....+..|++++.++ +..|+..++..|....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 677888888999999999999999999877655445666777999999999765 4578888877776554
No 41
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=75.53 E-value=8.7 Score=32.90 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
++..|.+-|.+.++.++..|+..|-.+..+....-..+.....+..|++++..+ +..||..++..|...+
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHh
Confidence 577888888999999999999999999886533324666667899999999854 4578888888876543
No 42
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=72.99 E-value=13 Score=32.40 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 84 DLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 84 eA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
.++..|.+-|++.++.++..|+..|-.+..+. ..+. .+.....+..|+.++.++ +..|+..++..|.....
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS 115 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 46888888999999999999999999998775 3343 666777899999999854 46788888888777663
No 43
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=72.86 E-value=5.1 Score=34.96 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHH-----------Hhh--HHHHHHHHhhhcC--CCcccchH
Q 016112 81 SSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSE-----------VAA--ERVLDEMVKLIDD--PQTVVNNR 145 (395)
Q Consensus 81 ~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~e-----------ias--~~Fl~eLvkli~~--~~t~~~Vk 145 (395)
..+-.+..|.+.++.-.|.-=+=+|-|+|+.|+||-..|.. ++. .+|-+-+..++.+ ...++..|
T Consensus 38 ~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k 117 (157)
T 3clj_A 38 IESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHK 117 (157)
T ss_dssp GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45667888889998777888889999999999997543310 110 1222222222222 11245788
Q ss_pred HHHHHHHHHHHHh
Q 016112 146 NKALVMIEAWGES 158 (395)
Q Consensus 146 ~KiL~lI~~W~~~ 158 (395)
.||..+|.-|...
T Consensus 118 ~Ki~klldiW~k~ 130 (157)
T 3clj_A 118 EKIRMLLDIWDRS 130 (157)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC
Confidence 9999999999743
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=69.77 E-value=34 Score=29.50 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHh
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
++..|..-|.+.++.++..|+..|..+..........+....++..|++++.++ +..||..++..|..-...
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST--DSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC--cHHHHHHHHHHHHHHHcC
Confidence 778888889999999999999999988874333234666778999999999764 357888888887766654
No 45
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=68.79 E-value=20 Score=30.52 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
++..|.+-|.+.++.++..|+..|..+..+.......+....++..|++++..+ +..|+..++..|....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 166 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 567888889999999999999999998876544444666777999999999864 4578888877776654
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=67.29 E-value=19 Score=33.95 Aligned_cols=70 Identities=9% Similarity=0.129 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-HHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 84 DLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 84 eA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F-~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
.++..|.+-|+++++.++..|..+|-.+..+. ... ..+....++..|+.++..+ +..|+..++..|..-.
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLV 237 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHH
Confidence 35667778888999999999999999988873 444 4677778999999999765 4578888888776554
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=63.07 E-value=14 Score=32.40 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
++..|.+-|.+.++.++..|+..|-.+..+.......+....++..|+.++..+ ++.|+..++..|..-.
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHh
Confidence 667788888899999999999999998876544334566677899999999865 4678888877776554
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=56.85 E-value=62 Score=33.77 Aligned_cols=91 Identities=9% Similarity=0.197 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcCC
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSEL 162 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~~ 162 (395)
...+..|.+.|.+.++.+...|+.++..+++.+|..|..+. ..++..+.+.+.++..+..||..++..+..-...+++.
T Consensus 638 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~ 716 (861)
T 2bpt_A 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh
Confidence 35666777788888999999999999999999998776443 46777777777765445688988888877766655432
Q ss_pred CChhhHHHHHHHH
Q 016112 163 RYLPVYEETYKSL 175 (395)
Q Consensus 163 ~~l~~i~~~Y~~L 175 (395)
..+.+..+...|
T Consensus 717 -~~~~l~~~l~~l 728 (861)
T 2bpt_A 717 -FIPYLNDIMALC 728 (861)
T ss_dssp -GHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 223334444443
No 49
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=55.31 E-value=43 Score=30.88 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHh---hHHHHHHHHhhhcCCCc
Q 016112 65 WAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVA---AERVLDEMVKLIDDPQT 140 (395)
Q Consensus 65 w~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eia---s~~Fl~eLvkli~~~~t 140 (395)
.+.+.=||++.+.+-...+-+...|++-|.+.+.. .+.+|=.++++||..+. .-+ -..+++.|..++..+..
T Consensus 147 lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~l 222 (260)
T 1hu3_A 147 IGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKT 222 (260)
T ss_dssp HHHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSS
T ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCC
Confidence 46677799999988777777777777777777665 45666677777898873 222 24577778888776666
Q ss_pred ccchHHHHHHHHHH
Q 016112 141 VVNNRNKALVMIEA 154 (395)
Q Consensus 141 ~~~Vk~KiL~lI~~ 154 (395)
+..+|-.|..++.-
T Consensus 223 s~Rirfmi~~l~dL 236 (260)
T 1hu3_A 223 SSRIRFMLQDVIDL 236 (260)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66677666666543
No 50
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=54.70 E-value=69 Score=24.46 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=47.9
Q ss_pred HHHhcCC-CCCcchhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHhhcC
Q 016112 243 TVLSSSP-QQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKK 309 (395)
Q Consensus 243 emL~~~~-~~e~~~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDeL~~aL~kYe~l~~ 309 (395)
.+|.... ..+..+-.-+-+|=..|-+|-+-|-.=++.+ +.--.+|=++|-.+..+|..|..++.
T Consensus 12 ~~l~~aDP~~~~~D~~el~~LE~~c~~MgplId~kLE~i---Drkh~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 12 QMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDI---DRKHSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHTCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566553 3444444556778999999999997777777 24567788999999999999998764
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=53.49 E-value=22 Score=37.72 Aligned_cols=106 Identities=10% Similarity=0.187 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhhH-HHHHHHHhhhcCCCcccchHH
Q 016112 69 LDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAE-RVLDEMVKLIDDPQTVVNNRN 146 (395)
Q Consensus 69 leIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias~-~Fl~eLvkli~~~~t~~~Vk~ 146 (395)
+.++|.+-.+ .+.+..|-.-|.+.+.++-++|+.+|..+..|.+.+.+ .|.+. .=+..|+.++.+++ ..+|+
T Consensus 111 ~~~~d~f~~~----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRn 184 (651)
T 3grl_A 111 SQFTEIFIKQ----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRN 184 (651)
T ss_dssp HHHHHHHHHS----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHH
T ss_pred HHHHHHHHcC----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHH
Confidence 4455665443 36677788888999999999999999999999998886 56543 57788999998765 57888
Q ss_pred HHHHHHHHHHHhhcCCCC----hhhHHHHHHHHhhcCC
Q 016112 147 KALVMIEAWGESTSELRY----LPVYEETYKSLRSRGI 180 (395)
Q Consensus 147 KiL~lI~~W~~~f~~~~~----l~~i~~~Y~~Lk~~Gi 180 (395)
.++.+|..-...-.+... ...|..+++-++.+|.
T Consensus 185 eallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 185 DGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC
Confidence 899888888764221111 1244555666666664
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=53.47 E-value=71 Score=32.59 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHh
Q 016112 82 SVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 82 ~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
....+..|++-|.+.+|.|...|...|-.+.+.+...+ -...|++.|..++.++ ++.|+.-++.++......
T Consensus 119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADS--NPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhh
Confidence 34445558888889999999888877777766543322 1246889999999764 357877777777776543
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=51.57 E-value=40 Score=32.10 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcc-cchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHh
Q 016112 83 VDLIRGIKKRIMLK--SPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 83 keA~raIrKrL~~~--n~~vq~~AL~LLe~~VkNc-G~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
.+.+..|...+.+. ++.+...||..|..+++.+ +..|..+. ..++..+...+.+..+...||..++..+..|...
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 47888888888888 9999999999999999987 33333222 2477777787876543568999999888887543
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=50.68 E-value=44 Score=34.35 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 84 DLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 84 eA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
.++..|.+-|++.++.++..|+..|-.+..+.......+.....+..|++++..+. ..++..++..|..|+.
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAY 169 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--HHHHHHHHHHHHHHHh
Confidence 36677888889999999999999999988876444456767778999999998653 3566667777777774
No 55
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=49.62 E-value=58 Score=31.80 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 84 DLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 84 eA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
.++..|.+-|++.++.++..|+..|-.+..+....-..+.....+..|++++..+ +..++..+...+..|+.
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY 172 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Confidence 3667788888999999999999999988876543333566667899999999864 35677777778888864
No 56
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=48.47 E-value=60 Score=30.79 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
++..|.+-|.+.++.++..|+..|-.+..++......+.....+..|+.++..+ +..||..++..|..-.
T Consensus 235 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNIT 304 (450)
T ss_dssp THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 566777788899999999999999999887654334555567888999999764 4578888887776654
No 57
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=48.11 E-value=21 Score=33.63 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=53.0
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 85 LIRGIKK-RIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 85 A~raIrK-rL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
++..|.+ -|.++++.++..|+..|-.++.|. +..+ .|.....+..|++++... ++..||.+++..|-...
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLV 153 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHH
Confidence 5666777 678999999999999999999985 4454 566667888899998743 23578888777666554
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=46.44 E-value=1.1e+02 Score=31.80 Aligned_cols=77 Identities=5% Similarity=0.037 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhc
Q 016112 83 VDLIRGIKKRIMLK-SPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTS 160 (395)
Q Consensus 83 keA~raIrKrL~~~-n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~ 160 (395)
...+..|.+-|.+. ++.+...|+.+|..+++.+|..|.... ..++..+...+.....+..+|.-++..+......++
T Consensus 648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhc
Confidence 45667777777765 888999999999999999998886543 478888888887643455788888877777766554
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=46.25 E-value=81 Score=29.87 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc-hhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcC
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEK-AFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSE 161 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~-~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~ 161 (395)
...+..|...|.+.+.++..-|+..|-.+...|.. .+.... ..++..|...+.++. +.||..+...|......+..
T Consensus 365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~--~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS--VVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSC--HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhccc
Confidence 45667788888899999999999999999998873 343221 457788888887654 68999888888888877654
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.04 E-value=72 Score=27.08 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=62.3
Q ss_pred HhhcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch
Q 016112 39 KELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKA 118 (395)
Q Consensus 39 ~~~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~ 118 (395)
+.+.+.+..+..++....+ +||..-...+..+..- +..+++..|.+.|.+.++.+...|+..|-.+
T Consensus 12 ~~~~~~~~~~~~L~~~L~~-----~~~~vR~~A~~~L~~~--~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~------- 77 (211)
T 3ltm_A 12 APLRADPEKVEMYIKNLQD-----DSYYVRRAAAYALGKI--GDERAVEPLIKALKDEDAWVRRAAADALGQI------- 77 (211)
T ss_dssp ----CCGGGHHHHHHHTTC-----SSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSCHHHHHHHHHHHHHH-------
T ss_pred hHhhcCHhHHHHHHHHHcC-----CCHHHHHHHHHHHHHh--CCccHHHHHHHHHcCCCHHHHHHHHHHHHhh-------
Confidence 3455566778888877543 4566655556555542 2356788888999999999999888776443
Q ss_pred hHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHH
Q 016112 119 FSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAW 155 (395)
Q Consensus 119 F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W 155 (395)
.....+..|++++.++ ++.||..++..+...
T Consensus 78 ----~~~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 78 ----GDERAVEPLIKALKDE--DGWVRQSAAVALGQI 108 (211)
T ss_dssp ----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 2344566677777654 357887777766544
No 61
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=45.48 E-value=56 Score=34.81 Aligned_cols=71 Identities=15% Similarity=0.091 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
++..|.+-|++.++.++..|+..|-.|..+....-..+.....+..|++++..+ ...|+..++..+..|..
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhc
Confidence 556666777888999999999999988877533223455566788899999763 35678888888888874
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=43.29 E-value=69 Score=33.02 Aligned_cols=86 Identities=22% Similarity=0.172 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCC
Q 016112 63 PDWAMNLDLCDMINTEKISS---VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQ 139 (395)
Q Consensus 63 ~Dw~~ileIcD~Ins~~~~~---keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~ 139 (395)
.+.+...+.+..|-.-...+ ..|+..|.+-|.++++++++.||.-|..++......|. +....+...+.++
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~- 362 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDL- 362 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSS-
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCC-
Confidence 34556666665554433233 24778888888999999999999999888876543332 1223334444332
Q ss_pred cccchHHHHHHHHHHH
Q 016112 140 TVVNNRNKALVMIEAW 155 (395)
Q Consensus 140 t~~~Vk~KiL~lI~~W 155 (395)
+..||.++++++...
T Consensus 363 -d~~Ir~~alelL~~l 377 (618)
T 1w63_A 363 -DVSIKRRAMELSFAL 377 (618)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -ChhHHHHHHHHHHHH
Confidence 234555555555444
No 63
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=43.24 E-value=82 Score=29.84 Aligned_cols=71 Identities=8% Similarity=0.127 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
++..|.+-|.+.++.++..|+..|-.+...+......+....++..|+.++.++ +..||..+...|.....
T Consensus 277 ~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 277 ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHc
Confidence 677788888899999999999999888876544344566667888888888754 35788877777766554
No 64
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=43.08 E-value=97 Score=30.51 Aligned_cols=106 Identities=11% Similarity=0.203 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcccchhH
Q 016112 48 VEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSV------DLIRGIKKRIMLKS-PRIQYLALVLLETVVKNCEKAFS 120 (395)
Q Consensus 48 ~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~k------eA~raIrKrL~~~n-~~vq~~AL~LLe~~VkNcG~~F~ 120 (395)
+..+|....++. .+.-......++.++......+. .++..|.+-|.+.+ +.++..|+..|-.+...+...-.
T Consensus 76 l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 566666665432 11111223334444444332222 35666777777776 99999999888888875432223
Q ss_pred HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 121 EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 121 eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
.+.....+..|+.++..+ +..|+..++..|..-.
T Consensus 155 ~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHh
Confidence 555667888899988764 4577777776665543
No 65
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=42.49 E-value=79 Score=31.17 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
..++..|.+-|.+.++.++..|+..|-.+..+.......+.....+..|+.++..+. ..|+..++..|..-.
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS--PSVLIPALRTVGNIV 314 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC--hhHHHHHHHHHHHHH
Confidence 357888889999999999999999999988766555556666678899999997653 578887777775544
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=41.69 E-value=1.1e+02 Score=31.58 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=48.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHH
Q 016112 71 LCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALV 150 (395)
Q Consensus 71 IcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~ 150 (395)
++-+.+..++-..-++..|+|=|+++||.+.-+||..|-.+ +.+ ++ .+.++..+.+++.....++.||+++..
T Consensus 98 l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i---~~~---e~-~~~l~~~v~~~l~~~d~~~~VRK~A~~ 170 (621)
T 2vgl_A 98 ISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV---GSR---EM-AEAFAGEIPKILVAGDTMDSVKQSAAL 170 (621)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH---CCH---HH-HHHHTTHHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc---CCH---HH-HHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 33333333333456788899999999999999998877544 112 22 234555666766323345678877666
Q ss_pred HHHHHHH
Q 016112 151 MIEAWGE 157 (395)
Q Consensus 151 lI~~W~~ 157 (395)
.+.....
T Consensus 171 al~kl~~ 177 (621)
T 2vgl_A 171 CLLRLYR 177 (621)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555444
No 67
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.44 E-value=1.3e+02 Score=25.07 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016112 84 DLIRGIKKRIMLKSPRIQYLALVLLE 109 (395)
Q Consensus 84 eA~raIrKrL~~~n~~vq~~AL~LLe 109 (395)
+++..|.+.|.+.++.+...|+..|.
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 68
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=40.43 E-value=1.9e+02 Score=29.96 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc-hhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcC
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEK-AFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSE 161 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~-~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~ 161 (395)
...+..|...|.+.++++...|+..|-.+...|++ .+... -..++..+...+.++. ..||..++..+..|...+..
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS--VVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhCch
Confidence 45667778888899999999999999999998884 34332 2346777777776543 57999999999888887653
No 69
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=40.05 E-value=54 Score=32.54 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
++..|..-|.+.++.++..|+..|-.++.+++.....+....++..|+.++..+ +..||..++..|..++.
T Consensus 300 ~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 300 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITA 370 (530)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 456677777889999999999999988877655445566667899999999865 45788888887777653
No 70
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=39.96 E-value=90 Score=30.67 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhc
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTS 160 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~ 160 (395)
...+..+.+.|...++.|...|+..|..++..+|..|. ...++..|..++.++ ...||..++..+......+.
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~~~--~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA---HATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH---HHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH---HHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHhcC
Confidence 45677777778888888988999999888888887653 345666777766543 34678778887777776553
No 71
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=39.14 E-value=57 Score=31.81 Aligned_cols=73 Identities=11% Similarity=0.038 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHH
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAW 155 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W 155 (395)
..++..|.+-|.+.++.++..|...|-.+..+....-..+.....+..|+.++........|+..++..|...
T Consensus 265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 5677888888889999999999999988877642222355555677888888865443457887777777654
No 72
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=38.41 E-value=64 Score=33.29 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016112 69 LDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLET 110 (395)
Q Consensus 69 leIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~ 110 (395)
+.++.+.+.+++-..-++..|+|-|+++|+.+..+||..|-.
T Consensus 92 l~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~ 133 (618)
T 1w63_A 92 LGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGC 133 (618)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHh
Confidence 344445444433344567777777777777777777765543
No 73
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=38.08 E-value=2.9e+02 Score=28.56 Aligned_cols=89 Identities=9% Similarity=0.129 Sum_probs=59.9
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc----hhHHHhhHHHHHHHHhhhcCCCccc
Q 016112 70 DLCDMINTE---KISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEK----AFSEVAAERVLDEMVKLIDDPQTVV 142 (395)
Q Consensus 70 eIcD~Ins~---~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~----~F~eias~~Fl~eLvkli~~~~t~~ 142 (395)
.+|+.+... ...-...+..|-+.|.+. +.++..|...|..++++|+. .+... -..++..|.+++.......
T Consensus 437 ~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~-~~~il~~L~~~l~~~d~~~ 514 (861)
T 2bpt_A 437 RIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF-YPALVDGLIGAANRIDNEF 514 (861)
T ss_dssp HHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG-HHHHHHHHHHHHTCSCCGG
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH-HHHHHHHHHHHHhCcCcch
Confidence 355554432 234567788888888775 99999999999999999872 23221 1456777888887554445
Q ss_pred chHHHHHHHHHHHHHhhc
Q 016112 143 NNRNKALVMIEAWGESTS 160 (395)
Q Consensus 143 ~Vk~KiL~lI~~W~~~f~ 160 (395)
.||.-+++.|.......+
T Consensus 515 ~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 515 NARASAFSALTTMVEYAT 532 (861)
T ss_dssp GHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 788777777766665543
No 74
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=36.18 E-value=86 Score=33.21 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcCC
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSEL 162 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~~ 162 (395)
.+.+..|.+-|....+.+...|+..+..++.+.|..|..+. ..++..|.+++.++.....|++.+..+|-.-+..+++.
T Consensus 669 ~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~ 747 (852)
T 4fdd_A 669 ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE 747 (852)
T ss_dssp HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHH
Confidence 45566677777777888888899889998899888886554 58999999999877666678888888877777654331
Q ss_pred --CChhhHHHHH
Q 016112 163 --RYLPVYEETY 172 (395)
Q Consensus 163 --~~l~~i~~~Y 172 (395)
++++.|...|
T Consensus 748 ~~~~l~~~~~~~ 759 (852)
T 4fdd_A 748 VAPMLQQFIRPW 759 (852)
T ss_dssp HGGGHHHHHHHH
T ss_pred hCccHHHHHHHH
Confidence 3455555444
No 75
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=35.46 E-value=1.5e+02 Score=29.51 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHH
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAW 155 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W 155 (395)
..++..|.+-|.+.++.++..|+..|-.|..++......+.....+..|+.++..+. ..|+..++..|..-
T Consensus 231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~al~aL~nl 301 (510)
T 3ul1_B 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE--LPIVTPALRAIGNI 301 (510)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC--hhhhhHHHHHHHHh
Confidence 567888999999999999999999999998876555556666678888999997643 46777777766544
No 76
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=34.38 E-value=3.1e+02 Score=30.13 Aligned_cols=105 Identities=11% Similarity=0.059 Sum_probs=62.9
Q ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccch--hH--H
Q 016112 47 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIML-KSPRIQYLALVLLETVVKNCEKA--FS--E 121 (395)
Q Consensus 47 ~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~-~n~~vq~~AL~LLe~~VkNcG~~--F~--e 121 (395)
.+.+.|+-+.++.-....-....+.++.++.++++..-|...|.. .. .++.+.+.|+.+|+..+++-... |. .
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~--~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~ 84 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSE--KTKYKPSTRLICLQTLSEKVREWNNESNLLELQ 84 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 466677777777655556677888999999887655555444421 11 17999999999999999932222 21 1
Q ss_pred HhhHHHHHHHHhhhcCCCcccchHHHHHHHHHH
Q 016112 122 VAAERVLDEMVKLIDDPQTVVNNRNKALVMIEA 154 (395)
Q Consensus 122 ias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~ 154 (395)
.-+...++-+.+ ..+......||+|+-.++-.
T Consensus 85 ~lr~~ll~~l~~-~~~~~~~~~IrnKL~~~la~ 116 (980)
T 3ibv_A 85 MIRDSVWSYIKE-LSFLDEPAYISNAVQHLLTL 116 (980)
T ss_dssp HHHHHHHHHHHH-CCSTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHH
Confidence 222333444443 22122344688776654433
No 77
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=34.36 E-value=79 Score=31.10 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHH
Q 016112 84 DLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEA 154 (395)
Q Consensus 84 eA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~ 154 (395)
..+..|.+.+...++.|...++..|..+++..|..|. ...++..|.++..++ +..||..+...+..
T Consensus 519 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~p~l~~l~~d~--d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKLTQDQ--DVDVKYFAQEALTV 584 (588)
T ss_dssp HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHHHHHHHHTTCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHHHHHHHHcCCC--chhHHHHHHHHHHH
Confidence 4556677777888999999999999999998887653 245666677765543 45788777666544
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.25 E-value=2.1e+02 Score=24.02 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=63.2
Q ss_pred hhcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh
Q 016112 40 ELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF 119 (395)
Q Consensus 40 ~~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F 119 (395)
+.++.+..+..++....+ +|+..-...+..+..- +..+++..|.+.|.+.++.+...|+..|..+
T Consensus 44 ~~~~~~~~~~~L~~~l~~-----~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~-------- 108 (211)
T 3ltm_A 44 GKIGDERAVEPLIKALKD-----EDAWVRRAAADALGQI--GDERAVEPLIKALKDEDGWVRQSAAVALGQI-------- 108 (211)
T ss_dssp HHHCCGGGHHHHHHHTTC-----SCHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH--------
T ss_pred HHhCCccHHHHHHHHHcC-----CCHHHHHHHHHHHHhh--CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------
Confidence 334445566667665543 3565555555554432 2346788899999999999999998877544
Q ss_pred HHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 120 SEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 120 ~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
+..+.+..|++++.++ ++.||..++..+..++
T Consensus 109 ---~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 109 ---GDERAVEPLIKALKDE--DWFVRIAAAFALGEIG 140 (211)
T ss_dssp ---CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC
T ss_pred ---CcHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC
Confidence 2335666777777654 4578887777766553
No 79
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=34.23 E-value=2.2e+02 Score=26.27 Aligned_cols=84 Identities=7% Similarity=0.097 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhcccchhH-HH------------hhHHHH
Q 016112 66 AMNLDLCDMINTEKISSVDLIRGIKKRIM----LKSPRIQYLALVLLETVVKNCEKAFS-EV------------AAERVL 128 (395)
Q Consensus 66 ~~ileIcD~Ins~~~~~keA~raIrKrL~----~~n~~vq~~AL~LLe~~VkNcG~~F~-ei------------as~~Fl 128 (395)
+.+.=|+++.+.+=...+-+...|++-|. ..+.. .+..|=.++++||..+. .- .-..++
T Consensus 175 g~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~----~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f 250 (284)
T 2vso_E 175 GLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEE----TLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLF 250 (284)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHH
Confidence 34566889998876666655555655554 44444 45666667777898873 21 223466
Q ss_pred HHHHhhhcCCCcccchHHHHHHHHH
Q 016112 129 DEMVKLIDDPQTVVNNRNKALVMIE 153 (395)
Q Consensus 129 ~eLvkli~~~~t~~~Vk~KiL~lI~ 153 (395)
+.|..++.++..+..||-.|..+|.
T Consensus 251 ~~l~~l~~~~~ls~RirFml~dlid 275 (284)
T 2vso_E 251 GILDNIIQTAKISSRIKFKLIDIKE 275 (284)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 7777777766666677766666654
No 80
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=33.98 E-value=1e+02 Score=34.18 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHh
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGES 158 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~ 158 (395)
.+..|.+.|++.++++...++.+|..++..|+..+.. .-..++..+..++.++.....|+..++..+..|...
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh
Confidence 4455667788999999999999999999998765532 135678888888877654457888888888888654
No 81
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=33.53 E-value=1.4e+02 Score=28.94 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=38.5
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHHhccc--chhHHHhhH----HHHHHHHhhhcCCCcccchHH
Q 016112 88 GIKKRIM---LKSPRIQYLALVLLETVVKNCE--KAFSEVAAE----RVLDEMVKLIDDPQTVVNNRN 146 (395)
Q Consensus 88 aIrKrL~---~~n~~vq~~AL~LLe~~VkNcG--~~F~eias~----~Fl~eLvkli~~~~t~~~Vk~ 146 (395)
.|.+.|+ ..+..+|.+|++|+..+..++. ..|..+++. .+-.-+.+.++...+++..+.
T Consensus 258 ~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 258 NLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 3447776 7899999999999999999986 236544321 122334444555556665554
No 82
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=33.42 E-value=1.5e+02 Score=29.13 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc--hh-HHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEK--AF-SEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~--~F-~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
++..|.+-|.+.++.++..|+..|..+...+++ .+ ..+.....+..|+.++..+ +..|+..++..|.....
T Consensus 384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA--DNRIIEVTLDALENILK 457 (530)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHH
Confidence 344566666778999999999999999888765 44 3555667888899888754 45788888887776654
No 83
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=32.67 E-value=2.1e+02 Score=30.21 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhc
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTS 160 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~ 160 (395)
..++..|.+.+.+.++.|...|...|..+...++..++...-..++..|.+.+.+. .+.||..+...|....+...
T Consensus 399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhh
Confidence 56788889999999999999999888877776654333222345677777777654 45788888888888776554
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=31.54 E-value=2.2e+02 Score=23.58 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=60.5
Q ss_pred hcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH
Q 016112 41 LFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS 120 (395)
Q Consensus 41 ~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~ 120 (395)
.++.+..+..++.-.. ++|+..-...+..+..- +..+++..|.+.|.+.++.|...|+..|..+
T Consensus 71 ~~~~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~--------- 134 (201)
T 3ltj_A 71 QIGDERAVEPLIKALK-----DEDGWVRQSAAVALGQI--GDERAVEPLIKALKDEDWFVRIAAAFALGEI--------- 134 (201)
T ss_dssp HHCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH---------
T ss_pred hhCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHh--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------
Confidence 3444445555555433 34555555555554432 2345778888889999999999998877554
Q ss_pred HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHH
Q 016112 121 EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAW 155 (395)
Q Consensus 121 eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W 155 (395)
.....+..|..++.++ +..||..++..+..+
T Consensus 135 --~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 135 --GDERAVEPLIKALKDE--DGWVRQSAADALGEI 165 (201)
T ss_dssp --TCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 2345666777777654 457887777776655
No 85
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=31.32 E-value=97 Score=32.10 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhc-CCCcccchHHHHHHHHHHH
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLID-DPQTVVNNRNKALVMIEAW 155 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~-~~~t~~~Vk~KiL~lI~~W 155 (395)
+.|+..|.+-|.++++++++.||..|..++...+. +.+. .++...+...+. ++ +..||.++|+++..-
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~-~~~~~~i~~~L~~d~--d~~Ir~~aL~lL~~l 396 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV-KTHIETVINALKTER--DVSVRQRAVDLLYAM 396 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH-HTTHHHHHHHHTTCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH-HHHHHHHHHHhccCC--CHhHHHHHHHHHHHH
Confidence 46778888888899999999999999988876531 1111 112223333333 22 345666666665544
No 86
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=31.10 E-value=96 Score=31.75 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHh-hHHHHHHHHhhhcCCCcccchHHHHHHHHHHH
Q 016112 84 DLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVA-AERVLDEMVKLIDDPQTVVNNRNKALVMIEAW 155 (395)
Q Consensus 84 eA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eia-s~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W 155 (395)
-++..|.+.|++.++.++..|+..|-.+..+...+ ..+. ....+..|++++.... +..++..++..|...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNL 84 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 35677777888899999999999999888876422 2333 3467777888776432 345665555555443
No 87
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=30.79 E-value=1.7e+02 Score=22.85 Aligned_cols=74 Identities=22% Similarity=0.156 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCccc
Q 016112 63 PDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVV 142 (395)
Q Consensus 63 ~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~ 142 (395)
+||..=...+..+-.- +...++..|.+.|.+.++.|...|+..|..+ +..+.+..|.+++.++ +.
T Consensus 54 ~~~~vR~~A~~aL~~~--~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~-----------~~~~a~~~L~~~l~d~--~~ 118 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNF--QDERAVEPLIKLLEDDSGFVRSGAARSLEQI-----------GGERVRAAMEKLAETG--TG 118 (131)
T ss_dssp SCHHHHHHHHHHHGGG--CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH-----------CSHHHHHHHHHHTTSC--CT
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHhCC--CH
Confidence 4566555555555443 3356778888888888888888777665432 2445667777777543 35
Q ss_pred chHHHHHHH
Q 016112 143 NNRNKALVM 151 (395)
Q Consensus 143 ~Vk~KiL~l 151 (395)
.||..+...
T Consensus 119 ~vr~~A~~a 127 (131)
T 1te4_A 119 FARKVAVNY 127 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677655543
No 88
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=30.58 E-value=1.9e+02 Score=28.69 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 83 VDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 83 keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
..++..|.+-|.+.++.++..|+..|-.|..++......+.....+..|+.++..+ +..|+..++..|....
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIV 321 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHHHHHHH
Confidence 56788899999999999999999999999987765555666777888899999754 3567777777766553
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=30.50 E-value=1.5e+02 Score=27.69 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHH---HHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 81 SSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVL---DEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 81 ~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl---~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
.|.-....|..-++|+|.++-.-+|.++..++.+.|..+ .+.+ ..+.+++.++ +..||+-++..+-.-+
T Consensus 164 ~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 164 GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACF 235 (266)
T ss_dssp CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 344455556666779999999999999999999999863 2345 8888888875 4589988887665433
No 90
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=29.67 E-value=2e+02 Score=28.53 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-HHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEA 154 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F-~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~ 154 (395)
++..|..-+.+.++.++..|...|-.+..++.... ..+.....+.-|..++..+ +..++..+|..|..
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISN 427 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 45556677788999999999988888887765544 3566667888889988754 34666666655443
No 91
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=27.92 E-value=2.2e+02 Score=22.42 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHhhHH
Q 016112 229 EAFDVARNSIELLSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDE 296 (395)
Q Consensus 229 ~~l~~a~~n~~LL~emL~~~~~~e~~~dEl~~eL~~~Cr~~q~rI~rlI~~~~ddEe~L~eLL~~NDe 296 (395)
.-.+.+++.+.-|+.-..+.. ...|+--..+.+..+....++.++++.+++.-.+|.+.|.++++
T Consensus 20 ~F~d~Lq~~~~~L~~~f~~L~---sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 20 RFKELLREEVNSLSNHFHNLE---SWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc---hHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 344666666666666666652 45677777777888888889999999876555789999998875
No 92
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=27.47 E-value=1.3e+02 Score=27.26 Aligned_cols=70 Identities=7% Similarity=-0.055 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 86 IRGIKKRIMLKSP--RIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 86 ~raIrKrL~~~n~--~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
+..+.+.|.+.++ .+|..|...|-.+..+....-..|....-+..|+.++..+ +..++..+...|..++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHh
Confidence 4566777888888 8887777666655544322223566666788899999764 45788888888888764
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=27.05 E-value=1.4e+02 Score=32.12 Aligned_cols=83 Identities=10% Similarity=0.156 Sum_probs=50.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHH
Q 016112 71 LCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALV 150 (395)
Q Consensus 71 IcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~ 150 (395)
+|+.+...+..-..++..|-+.| + +.|+..|-..+..++++|+..+..+. ..+++.|..++.++..+..++..+++
T Consensus 533 ~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ 608 (971)
T 2x1g_F 533 YCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMF 608 (971)
T ss_dssp THHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 33444444444556677777777 2 78888888888888899987654332 45777777777765444455555555
Q ss_pred HHHHHHH
Q 016112 151 MIEAWGE 157 (395)
Q Consensus 151 lI~~W~~ 157 (395)
.|-.-..
T Consensus 609 ai~~i~~ 615 (971)
T 2x1g_F 609 SIGKLMS 615 (971)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 94
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=26.32 E-value=1.4e+02 Score=26.96 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
++..|.+-|.+.++.+|..|...|..+...+ .... .|...--+..|++++.... +..+++.+...|...+
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 5778888889999999999999999998743 2333 5666678888999997422 3567777776654443
No 95
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=26.31 E-value=1.4e+02 Score=28.58 Aligned_cols=70 Identities=7% Similarity=0.066 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAW 155 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W 155 (395)
++..|.+-|.++++.+|..|...|..|..+.+.... .|.....+..|++++.... +..+++.++..|...
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 477788888999999999999999999876444443 5666677888999754322 346777777765433
No 96
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=25.53 E-value=5e+02 Score=28.01 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccc-----chhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHH
Q 016112 86 IRGIKKRIMLKSPRIQYLALVLLETVVKNCE-----KAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWG 156 (395)
Q Consensus 86 ~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG-----~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~ 156 (395)
+-.|.+-++++++.++.+|+.-|--|..+.+ +.|.+.+....+..+++++.++..+..++.-+++.|..-.
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS 407 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 3566677788999999999998887775443 4566656678889999999876435567776666655543
No 97
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=25.49 E-value=2.6e+02 Score=27.71 Aligned_cols=68 Identities=9% Similarity=-0.007 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-HHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHH
Q 016112 85 LIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEA 154 (395)
Q Consensus 85 A~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F-~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~ 154 (395)
++..|..-|.+.++.++..|...|-.+..++.... ..+.....+.-|+.++..+ +..++..+|..|..
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~n 446 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISN 446 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 44556666778899999888888877777665443 3566667888899998754 34566555554433
No 98
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=25.16 E-value=5.3e+02 Score=28.31 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhh
Q 016112 82 SVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGEST 159 (395)
Q Consensus 82 ~keA~raIrKrL~-~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f 159 (395)
..+.+..|.+-+. +.++.++..|+..|-.++..+|..|... -..++..|...+.++. ..||.+++..|.......
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~~--~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPR--LAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSS--HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhc
Confidence 3566677777777 5889999999999999998888766432 2567888888887643 478998888877776544
No 99
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=24.33 E-value=1.4e+02 Score=29.18 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHH
Q 016112 86 IRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGE 157 (395)
Q Consensus 86 ~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~ 157 (395)
+..|.+.|++.++.+|..|...|..+..+. .... .|.....+..|++++..+ ++.++..+...|..+..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhc
Confidence 456777788889999999998888876543 3333 677777888899998753 35677777777776653
No 100
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.52 E-value=1.1e+02 Score=21.83 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhH-HHHHHHHHHHh
Q 016112 271 FTVQRIIETAGDNEALLFEALNVND-EIQKVLTKYEE 306 (395)
Q Consensus 271 ~rI~rlI~~~~ddEe~L~eLL~~ND-eL~~aL~kYe~ 306 (395)
..|..++..++.+++.-..+|+.|+ +|..|+..|=.
T Consensus 17 e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3566777777767777778888665 89999999854
No 101
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=22.93 E-value=2.7e+02 Score=28.12 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=45.7
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHHHHHhc-------CCCCHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHhcccch
Q 016112 49 EKLVEDATSEALEEPDWAMNLDLCDMINT-------EKISSVDLIRGIKK---RIMLKSPRIQYLALVLLETVVKNCEKA 118 (395)
Q Consensus 49 ~~lIekATs~~l~~~Dw~~ileIcD~Ins-------~~~~~keA~raIrK---rL~~~n~~vq~~AL~LLe~~VkNcG~~ 118 (395)
..+++.. .+.+...+++...+.|..|.. .+...+.++..+.. .|.++++++++.||.-|..+++.....
T Consensus 238 ~~~l~~l-~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~ 316 (591)
T 2vgl_B 238 QSICERV-TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEI 316 (591)
T ss_dssp HHHHHHH-TTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHH-HHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHH
Confidence 3444443 345667788888888877655 22333333333322 466799999999999999988876554
Q ss_pred h
Q 016112 119 F 119 (395)
Q Consensus 119 F 119 (395)
|
T Consensus 317 ~ 317 (591)
T 2vgl_B 317 L 317 (591)
T ss_dssp T
T ss_pred H
Confidence 4
No 102
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=22.91 E-value=98 Score=20.64 Aligned_cols=25 Identities=20% Similarity=0.431 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHh
Q 016112 256 DDLTTTLVQQCRQSQFTVQRIIETA 280 (395)
Q Consensus 256 dEl~~eL~~~Cr~~q~rI~rlI~~~ 280 (395)
++--..++..|.+.|..+|.|+.+-
T Consensus 11 ~~rkerIv~eCnavrqALQdLlseY 35 (40)
T 4e17_B 11 DDRRERIVAECNAVRQALQDLLSEY 35 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567899999999999998764
No 103
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=22.66 E-value=96 Score=25.88 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCH---HHHHHHHHHHhcC----CCHHHHHH-----HHHHHHHHHhcccchhH
Q 016112 69 LDLCDMINTEKISS---VDLIRGIKKRIML----KSPRIQYL-----ALVLLETVVKNCEKAFS 120 (395)
Q Consensus 69 leIcD~Ins~~~~~---keA~raIrKrL~~----~n~~vq~~-----AL~LLe~~VkNcG~~F~ 120 (395)
.++.+.+++.+... .++++.+.++|+. +....|+. ++..|..+|..|..+|.
T Consensus 57 ~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfs 120 (136)
T 3ayh_A 57 FEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFK 120 (136)
T ss_dssp HHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHT
T ss_pred HHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCC
Confidence 46778888876555 8999999999862 33444443 33567788888888875
No 104
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=21.86 E-value=65 Score=31.38 Aligned_cols=30 Identities=30% Similarity=0.243 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 016112 86 IRGIKKRIMLKSPRIQYLALVLLETVVKNC 115 (395)
Q Consensus 86 ~raIrKrL~~~n~~vq~~AL~LLe~~VkNc 115 (395)
+..++.-+..+||-||+.|+.+|-.+-++-
T Consensus 178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 178 VNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 334445556788888888888887776654
No 105
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=21.36 E-value=5e+02 Score=25.92 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=52.7
Q ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCC-----------------------------
Q 016112 47 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKS----------------------------- 97 (395)
Q Consensus 47 ~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n----------------------------- 97 (395)
.+++||++.|+.... |-..+-.+-=.-+ .-..|.+.+..|..|.....
T Consensus 46 TL~~LVe~Lt~~~~~--D~~f~~~FLlTyR-sF~tp~eLL~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 122 (490)
T 2ii0_A 46 TVIKLIERLTYHMYA--DPNFVRTFLTTYR-SFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEY 122 (490)
T ss_dssp CHHHHHHHHTCSSSC--CHHHHHHHHHHGG-GTSCHHHHHHHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHHHHHHHHT
T ss_pred CHHHHHHHHccCCCC--CHHHHHHHHHHHH-hhCCHHHHHHHHHHHHhccCCCchhhhhhhhccCCccchHHHHHHHHhh
Confidence 589999999987654 3332222222222 34578888888888876421
Q ss_pred -HHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhc
Q 016112 98 -PRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLID 136 (395)
Q Consensus 98 -~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~ 136 (395)
..+|++-+.+|..-|.+|...|.. +.+++..|...+.
T Consensus 123 ~~~iq~rV~~vl~~Wv~~~~~DF~~--d~~ll~~L~~F~~ 160 (490)
T 2ii0_A 123 IQPVQLRVLNVCRHWVEHHFYDFER--DAYLLQRMEEFIG 160 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHCTHHHHH--CHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHhCcccccc--CHHHHHHHHHHHH
Confidence 246778888888888888776732 2234444444443
No 106
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=20.33 E-value=1.2e+02 Score=32.13 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhHHHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHH
Q 016112 82 SVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAW 155 (395)
Q Consensus 82 ~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W 155 (395)
-..++..|.+-|.+.++.++..|+..|-.+..+....-..+.....+..|++++........|+..++..|...
T Consensus 397 ~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470 (780)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 45788888888999999999999999998877643222355566678888888865333346887777776654
No 107
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=20.29 E-value=3.1e+02 Score=28.02 Aligned_cols=90 Identities=12% Similarity=0.206 Sum_probs=38.3
Q ss_pred cchhhhhhhhccccchHHHHHhhcCC---CChHHHHHHHHc--------------------------CC-CCCCccHHHH
Q 016112 19 GGAEVGRKMSEGMSQMSFKMKELFQG---PNPVEKLVEDAT--------------------------SE-ALEEPDWAMN 68 (395)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~f~~---~s~~~~lIekAT--------------------------s~-~l~~~Dw~~i 68 (395)
.|..|.-+...-|..+.......+.. |..+.++|++|+ ++ .+.+-||...
T Consensus 17 ~~~~~~~~~~~~i~~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~~~~~ll~~Ik~iL~~~~~~~~lD~~~L 96 (500)
T 3vld_A 17 RGSHMSEKETNYVENLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDMDVKPLLATIKRFLTSNVSYDSLNYDYL 96 (500)
T ss_dssp ------------CHHHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSCCCHHHHHHHHHHHHCSSCCTTCCHHHH
T ss_pred CCcchhhhhhhHHHHHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcccHHHHHHHHHHHHcCCccccccCHHHH
Confidence 35555555555556666555555543 234566666652 22 3334455555
Q ss_pred HHHHHHHhcCCCCHH-----HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016112 69 LDLCDMINTEKISSV-----DLIRGIKKRIMLKSPRIQYLALVLLE 109 (395)
Q Consensus 69 leIcD~Ins~~~~~k-----eA~raIrKrL~~~n~~vq~~AL~LLe 109 (395)
+++-|.|=... .-. .-+..|.+-|+++++.....|+.++.
T Consensus 97 i~Ll~~il~~~-~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~ 141 (500)
T 3vld_A 97 LDVVDKLVPMA-DFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE 141 (500)
T ss_dssp HHHHHHHHHHS-CHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc
Confidence 55444433211 111 11334555566666666666666665
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=20.09 E-value=2.7e+02 Score=31.13 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=56.7
Q ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH--H--H
Q 016112 47 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS--E--V 122 (395)
Q Consensus 47 ~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~--e--i 122 (395)
.++++|..+.++. .+.-....+....+..++.+..-+...|. .+.++.+.+.|+.+|+..+++.-..+. + -
T Consensus 29 ~Le~lv~~ly~p~--~~~r~qA~~~L~q~q~sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 29 LLDNVVNCLYHGE--GAQQRMAQEVLTHLKEHPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp HHHHHHHTTTCSS--HHHHHHHHHHHHTSSCCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence 4666666655553 22344556666777776655444444332 257999999999999999997544441 1 1
Q ss_pred hhHHHHHHHHhhhcCC---CcccchHHHHHHH
Q 016112 123 AAERVLDEMVKLIDDP---QTVVNNRNKALVM 151 (395)
Q Consensus 123 as~~Fl~eLvkli~~~---~t~~~Vk~KiL~l 151 (395)
-+...++-+.+...++ ..++.++.|+-.+
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~ 135 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI 135 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHH
Confidence 2333455555554433 1234555554443
Done!