Query 016113
Match_columns 395
No_of_seqs 131 out of 281
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04177 TAP42: TAP42-like fam 100.0 9.7E-72 2.1E-76 555.8 15.8 313 10-383 1-340 (340)
2 KOG2830 Protein phosphatase 2A 100.0 2.9E-59 6.3E-64 449.0 23.8 309 1-393 1-324 (324)
3 PF12309 KBP_C: KIF-1 binding 43.7 1.1E+02 0.0024 31.4 8.3 78 31-113 261-344 (371)
4 PF13355 DUF4101: Protein of u 33.7 60 0.0013 27.5 3.9 40 297-340 6-45 (117)
5 TIGR00256 D-tyrosyl-tRNA(Tyr) 28.9 38 0.00082 30.1 1.9 68 41-113 41-118 (145)
6 PF08599 Nbs1_C: DNA damage re 26.7 1.1E+02 0.0023 23.4 3.7 11 317-327 37-47 (65)
7 KOG2830 Protein phosphatase 2A 21.3 3.7E+02 0.0081 27.1 7.4 30 127-156 121-150 (324)
8 PF04380 BMFP: Membrane fusoge 17.1 5.1E+02 0.011 20.3 7.1 54 88-155 24-77 (79)
9 PF00392 GntR: Bacterial regul 16.2 67 0.0015 23.7 0.8 19 298-316 9-27 (64)
10 COG2188 PhnF Transcriptional r 15.4 99 0.0021 29.2 1.9 18 298-315 16-33 (236)
No 1
>PF04177 TAP42: TAP42-like family; InterPro: IPR007304 The TOR signalling pathway activates a cell-growth program in response to nutrients []. TIP41 interacts with TAP42 and negatively regulates the TOR signalling pathway [].; GO: 0009966 regulation of signal transduction; PDB: 3QC1_A 2V0P_A.
Probab=100.00 E-value=9.7e-72 Score=555.81 Aligned_cols=313 Identities=36% Similarity=0.541 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHhh------hhccCCCchHHHHHHHHHHHHHHHHhhhhCCCCCCCCCcccccccchhhchhHHHhHhhc
Q 016113 10 PLPSLFERGRKIHQ------IATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIE 83 (395)
Q Consensus 10 sL~~lf~~~~~~~~------~~~~s~~~Q~~v~~~i~~l~~~~~~v~~l~LFS~NE~leDIsT~~L~yLllpy~lg~L~~ 83 (395)
||++||..|+++|. .+.+|++||+.|.++|..|++|+.+|+++||||+||+||||+|++|+|||||||||.|++
T Consensus 1 ~L~~lf~~~~~~~~~le~~~~~~~s~~~q~~v~~~i~~l~~~~~~v~~l~lFS~NE~ledIsT~~LkyLllpy~Lg~L~~ 80 (340)
T PF04177_consen 1 SLSELFDEALKLYDELENSSLPSSSPEYQEKVKSAIADLEKAQKMVSQLSLFSSNEELEDISTSDLKYLLLPYYLGELTL 80 (340)
T ss_dssp -HHHHHHHHHHHHHHCCC-SS-TTSHHHHHHHHHHHHHHHHHHHHHCCCTCCHCSSSCCCS-CCCHGGGGHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCcccccccchhHHHHHHHHHHHHH
Confidence 69999999999996 366788999999999999999999999999999999999999999999999999999999
Q ss_pred h-hchhhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHhhhC----------CCcchHHHHHHHHHHHHHHHHHHHHHH
Q 016113 84 K-IAQDDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQA----------KPTAFTDQRARKIARFKRQRAAESKLQ 152 (395)
Q Consensus 84 k-~~~~~R~~~L~~A~~~~~~FL~~l~~Y~il~~~~~~~~~~~----------~~~~~a~~R~~KI~rfK~eKeL~~kL~ 152 (395)
+ ....+|+.+|+.|+.||..||++|++|+|+++++...+... .+.+|+.+|+.||+|||++|+|+++|.
T Consensus 81 k~~~~~~R~~~L~~A~~~~~~FL~~~~~y~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~KI~r~K~eKel~~~L~ 160 (340)
T PF04177_consen 81 KLSNPEDRLEILKRAKEYYIEFLKRCEDYGLLDKDDPKLLESYQDNPSSSSSSSLSDPAARRNEKIARFKREKELEQKLK 160 (340)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHCCHHHTT-S-HHHHHHHHT-HHS---SSCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 56788999999999999999999999999999887655432 467999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHhhhcCCCch
Q 016113 153 EIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCK---------KEEDMLSAVKERQLKGGEEE 223 (395)
Q Consensus 153 ~L~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~---------~E~elL~~~~~~~~~~~~~~ 223 (395)
.|++.... +.+++|||++|++||++|++|+++ +|++||++++.+.......
T Consensus 161 ~l~~~~~~-------------------~~~~~DEE~~Re~~l~~L~~~~~~s~~~l~si~~El~mL~~~~~~~~~~~~~- 220 (340)
T PF04177_consen 161 ELEKRRES-------------------DDDDDDEEIEREYYLLLLKLWVLKSLEELESIEQELEMLEMRPKMKEAPESE- 220 (340)
T ss_dssp HHHHHHHT-------------------TTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----------
T ss_pred HHHHhhcc-------------------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCc-
Confidence 99986541 123568999999999999999988 7777777766543211100
Q ss_pred hhHHHHHHhhhhhhhhhhhHHhhhhcCCCCCCcccccchhhhhhh-cccccccccccCCCcccccccccCCCCchHHHHH
Q 016113 224 FSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCATFAQDVLEG-RAKVSQAHEHKHQPMIFGPASLVGGGLTSERERM 302 (395)
Q Consensus 224 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~~~p~~~~~~~it~~R~~l 302 (395)
...+.+. ......+++ +.+.. ..++. .. +.++ +++||| |++.|+++
T Consensus 221 ---~~~~~~~--------~~~~~~~~~-------------~~l~~~~~~pl--~~-~~~~-~l~pft-----i~~~R~~~ 267 (340)
T PF04177_consen 221 ---PSQDERD--------DEPDADGYS-------------DRLESPKPGPL--LS-KPGK-PLKPFT-----ITSTREQL 267 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---ccccccc--------ccccccccc-------------ccccccCCCCC--CC-CCCC-CCCCcc-----cHHHHHHH
Confidence 0000000 000000111 11110 00011 11 1122 458886 45579999
Q ss_pred HHhcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCcHHHHHHHHhcccCccCC
Q 016113 303 AAQVFQPMHRLPTMSIEEAGLKEMEMMNKWQEMNVKLMEEANSAWYKDNRKLGTSENDNEDDDDDAVQKARAFDDWKDDN 382 (395)
Q Consensus 303 q~~VFgpG~~LPTMTVdE~~~~E~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~eeddde~~~KaR~WDd~KD~n 382 (395)
|++||||||+||||||||||++|++ +|.++.++..............++++++.+|++++|+|+||||||+|
T Consensus 268 ~~~VFgpg~~LPTMTveE~~e~E~~--------~g~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~e~~k~R~WDdwKD~n 339 (340)
T PF04177_consen 268 QKKVFGPGHPLPTMTVEEFLEQEMR--------EGNIPQGGGAKAEAKEEEEEEDDEDDDEEDDEETLKAREWDDWKDDN 339 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCCCCCcCcHHHHHHHHHH--------hccCccccccccccccccccchhhhhhhhhcHHHHHHHhhhcccccC
Confidence 9999999999999999999999983 36666654322100011112234445566788899999999999999
Q ss_pred C
Q 016113 383 P 383 (395)
Q Consensus 383 p 383 (395)
|
T Consensus 340 p 340 (340)
T PF04177_consen 340 P 340 (340)
T ss_dssp -
T ss_pred C
Confidence 8
No 2
>KOG2830 consensus Protein phosphatase 2A-associated protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-59 Score=448.95 Aligned_cols=309 Identities=34% Similarity=0.484 Sum_probs=233.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHHHHHHhhhhCCCCCCCCCcccccccchhhchhHHHhH
Q 016113 1 MGEVSREELPLPSLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGE 80 (395)
Q Consensus 1 ~~~~~~~~~sL~~lf~~~~~~~~~~~~s~~~Q~~v~~~i~~l~~~~~~v~~l~LFS~NE~leDIsT~~L~yLllpy~lg~ 80 (395)
|+++++...+|..||+...........+..++..+...|..+..|+.||++|+|||+||+||||+|++||||+||||||.
T Consensus 1 Ma~~~e~~~~~~~L~d~~~~~~~~~~E~~~~~~~~~~~i~q~~~~t~m~~ql~lFSsNE~iedIsT~sLkyLlVpyflg~ 80 (324)
T KOG2830|consen 1 MASLDELELPLQKLYDLSLKGKQLRDESEVATEPVLKRIKQLKVATEMVNQLALFSSNETIEDISTNSLKYLLVPYFLGK 80 (324)
T ss_pred CcchhhhccchhhhHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhccccccchhhhHHHHHH
Confidence 77888888888888888777666667788899999999999999999999999999999999999999999999999999
Q ss_pred hhchhchhhHHHHHHHHHHHHHHHHHHHHhcCCCChHHH---------HHh----hhCCCcchHHHHHHHHHHHHHHHHH
Q 016113 81 LIEKIAQDDRLQILKASQAKLKEFISFCEIMELVPEEEL---------EAV----AQAKPTAFTDQRARKIARFKRQRAA 147 (395)
Q Consensus 81 L~~k~~~~~R~~~L~~A~~~~~~FL~~l~~Y~il~~~~~---------~~~----~~~~~~~~a~~R~~KI~rfK~eKeL 147 (395)
|+.++.+++|+++|+.|..||..||.+|..|+|.+.... ... .......++.+|..||+||+++|++
T Consensus 81 Lt~k~~~~~~~~~lk~a~~~f~~~ls~c~~y~L~~~~~~k~~~~~~~~~~~~s~~~~~~l~~~~~~r~~Kier~~r~kEl 160 (324)
T KOG2830|consen 81 LTEKQINEDRLDHLKLAEEHFINFLSRCQDYHLAPFELPKTKNNAADRALKISRMAEKSLVEAALKRQKKIERYKRKKEL 160 (324)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHhccCccchhhccccCchhHHHHHHhhhccchhHHHHHHHHhHHHHHHHHHHH
Confidence 999988788899999999999999999999999654321 111 2235678999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhhhcCCCchhhH
Q 016113 148 ESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISL-AVCKKEEDMLSAVKERQLKGGEEEFSE 226 (395)
Q Consensus 148 ~~kL~~L~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l-~~~~~E~elL~~~~~~~~~~~~~~~~~ 226 (395)
+.+|..++.. ++++ .+||+.+|++|+++|.. |+-....++-.+..+.
T Consensus 161 ~~~l~~~~~a----------------ve~~-----~~Dde~lrelyl~~l~~~~~d~~lee~E~i~~e~----------- 208 (324)
T KOG2830|consen 161 KHRLTRMQSA----------------VEDG-----QDDDEHLRELYLLQLQRGWIDISLEEEESIDQEE----------- 208 (324)
T ss_pred HHHHHHHHHh----------------hhcC-----CCchHHHHHHHHHHHHhhhhchhHHHHHHHHHHH-----------
Confidence 9999999862 4444 33667799999999999 6655333333322221
Q ss_pred HHHHHhhhhhhhhhhhHHhhhhcCCCCCCcccccchhhhhhhcccccccccccCCCcccccccccCCCCchHHHHHHHhc
Q 016113 227 VVLDERSKKAESWHRDAAIRAQYTKPAQPITCATFAQDVLEGRAKVSQAHEHKHQPMIFGPASLVGGGLTSERERMAAQV 306 (395)
Q Consensus 227 ~~~~~r~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~p~~~~~~~it~~R~~lq~~V 306 (395)
.++.++. +.+.+.+.. .+++ ..+| +..|||+ .|++.|++|
T Consensus 209 r~lkE~~----------------s~r~~st~~--------t~~~--------e~~p-~~~~fi~-------~r~~~q~kV 248 (324)
T KOG2830|consen 209 RLLKEGE----------------SSRDPSTSN--------TSRG--------ETRP-PLFPFII-------TRNETQKKV 248 (324)
T ss_pred HHHhccc----------------cccccccCc--------cccc--------cCCC-CcchHHH-------HHHHHhhhh
Confidence 1122110 111111000 0000 1256 6678863 399999999
Q ss_pred CCCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCcHHHHHHHHhcccCccCCCCC
Q 016113 307 FQPMH-RLPTMSIEEAGLKEMEMMNKWQEMNVKLMEEANSAWYKDNRKLGTSENDNEDDDDDAVQKARAFDDWKDDNPRG 385 (395)
Q Consensus 307 FgpG~-~LPTMTVdE~~~~E~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~eeddde~~~KaR~WDd~KD~npRG 385 (395)
||.|| .|||||||||++++|+. |.++.++..+.... .++++.+++++|++++|+|+||+|||+||||
T Consensus 249 fG~Gyp~lPtMsvdE~~~~~~~~--------g~a~~~~~~~~~a~----~ed~E~~e~ddd~~~~kar~wDe~Kd~~prG 316 (324)
T KOG2830|consen 249 FGLGYPGLPTMTVDEFLDQEFEE--------GIAKAEAEESRPAA----KEDQEEEEEDDDEATMKARRWDEFKDDHPRG 316 (324)
T ss_pred hhcCCCCCccccHHHHHHHHHHh--------hhcccCcccccccc----cchhhhhcccChHHHHHHhhhccccccCccc
Confidence 99999 59999999999988843 54444322222111 1222336778899999999999999999999
Q ss_pred CCCCCCCC
Q 016113 386 AGNKKLTP 393 (395)
Q Consensus 386 ~GNt~~~~ 393 (395)
||||++++
T Consensus 317 ~GN~~n~~ 324 (324)
T KOG2830|consen 317 SGNTMNTG 324 (324)
T ss_pred ccccccCC
Confidence 99999985
No 3
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=43.67 E-value=1.1e+02 Score=31.37 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhCCCCCC-CCCc-ccccccc-hhhchhHHHhHhhchhc---hhhHHHHHHHHHHHHHHH
Q 016113 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSN-ETKD-DISTANL-KYILVPYFLGELIEKIA---QDDRLQILKASQAKLKEF 104 (395)
Q Consensus 31 ~Q~~v~~~i~~l~~~~~~v~~l~LFS~N-E~le-DIsT~~L-~yLllpy~lg~L~~k~~---~~~R~~~L~~A~~~~~~F 104 (395)
+-..+.++|..|+....... +++ ..+. -+..+.+ +||..=|++|.|+.|+. +..++++|..|-.+|..+
T Consensus 261 in~l~~~ai~~y~~fl~s~~-----~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~v 335 (371)
T PF12309_consen 261 INQLCSKAIKYYQKFLDSYK-----SPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWV 335 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHH
Confidence 34456667777766554443 444 2222 2444544 46777788999999983 457999999999999999
Q ss_pred HHHHHhcCC
Q 016113 105 ISFCEIMEL 113 (395)
Q Consensus 105 L~~l~~Y~i 113 (395)
..-|+.+..
T Consensus 336 v~y~~~~~~ 344 (371)
T PF12309_consen 336 VDYCEKHPE 344 (371)
T ss_pred HHHHHhChh
Confidence 999999987
No 4
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=33.71 E-value=60 Score=27.48 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=25.9
Q ss_pred hHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 016113 297 SERERMAAQVFQPMHRLPTMSIEEAGLKEMEMMNKWQEMNVKLM 340 (395)
Q Consensus 297 ~~R~~lq~~VFgpG~~LPTMTVdE~~~~E~e~~~~~~~~~~~~~ 340 (395)
..-...|+.+|||.|. +=.+++++...| +..|+.+.....
T Consensus 6 ~~Wl~~Ka~alg~~~~--~~~L~~vl~g~l--l~~w~~~a~~~~ 45 (117)
T PF13355_consen 6 QRWLSAKAQALGPPHD--IDSLSEVLTGPL--LSQWQDRAQWLK 45 (117)
T ss_pred HHHHHHHHHHhCCCcc--hhHHHHHhhHHH--HHHHHHHHHHHH
Confidence 3466789999999996 234555555555 666766544433
No 5
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=28.87 E-value=38 Score=30.14 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhhCCCCCCC-----CCcccccccchhhchhHHHhHhhchhchhhHHHHH-----HHHHHHHHHHHHHHHh
Q 016113 41 VLEKCEDMVGKLGLFSSNE-----TKDDISTANLKYILVPYFLGELIEKIAQDDRLQIL-----KASQAKLKEFISFCEI 110 (395)
Q Consensus 41 ~l~~~~~~v~~l~LFS~NE-----~leDIsT~~L~yLllpy~lg~L~~k~~~~~R~~~L-----~~A~~~~~~FL~~l~~ 110 (395)
....+.+-|-.|-||++.+ ++.|+ .--.|+||=+ .|+......+|..+- +.|+.+|..|+..|+.
T Consensus 41 ~~~~~~~Kil~lRif~de~gk~~~Sv~d~---~geiL~VSQF--TL~a~~~KG~rPsF~~a~~~~~A~~ly~~fv~~l~~ 115 (145)
T TIGR00256 41 KADKLAEKVLNYRIFSDSEGKMNLNVQQA---GGEILSVSQF--TLAADTKKGMRPSFSKGASPDRAEELYEYFVELCRE 115 (145)
T ss_pred HHHHHHHHHhheEeccCCCCCccCCHHHC---CCCEEEEECC--cccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 3456677777899998844 44444 2344666654 555544323333333 7899999999999998
Q ss_pred cCC
Q 016113 111 MEL 113 (395)
Q Consensus 111 Y~i 113 (395)
++.
T Consensus 116 ~~~ 118 (145)
T TIGR00256 116 KGM 118 (145)
T ss_pred cCC
Confidence 863
No 6
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=26.74 E-value=1.1e+02 Score=23.39 Aligned_cols=11 Identities=45% Similarity=0.395 Sum_probs=9.5
Q ss_pred cHHHHHHHHHH
Q 016113 317 SIEEAGLKEME 327 (395)
Q Consensus 317 TVdE~~~~E~e 327 (395)
.++||+.+|||
T Consensus 37 eleeWl~~e~E 47 (65)
T PF08599_consen 37 ELEEWLRQEME 47 (65)
T ss_pred cHHHHHHHHHH
Confidence 78999998885
No 7
>KOG2830 consensus Protein phosphatase 2A-associated protein [Signal transduction mechanisms]
Probab=21.33 E-value=3.7e+02 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016113 127 PTAFTDQRARKIARFKRQRAAESKLQEIKE 156 (395)
Q Consensus 127 ~~~~a~~R~~KI~rfK~eKeL~~kL~~L~~ 156 (395)
...++..|..||++|+...-+...+....+
T Consensus 121 ~~~~~~~~~~~~s~~~~~~l~~~~~~r~~K 150 (324)
T KOG2830|consen 121 TKNNAADRALKISRMAEKSLVEAALKRQKK 150 (324)
T ss_pred ccCchhHHHHHHhhhccchhHHHHHHHHhH
Confidence 458899999999999999988888877665
No 8
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=17.11 E-value=5.1e+02 Score=20.27 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016113 88 DDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQAKPTAFTDQRARKIARFKRQRAAESKLQEIK 155 (395)
Q Consensus 88 ~~R~~~L~~A~~~~~~FL~~l~~Y~il~~~~~~~~~~~~~~~~a~~R~~KI~rfK~eKeL~~kL~~L~ 155 (395)
.-+-++-...+..+..+|.. +++++.++.+... ....+=..|| .+|+.+|..|.
T Consensus 24 ~~~~e~e~~~r~~l~~~l~k---ldlVtREEFd~q~-----~~L~~~r~kl------~~LEarl~~LE 77 (79)
T PF04380_consen 24 GPREEIEKNIRARLQSALSK---LDLVTREEFDAQK-----AVLARTREKL------EALEARLAALE 77 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHH---CCCCcHHHHHHHH-----HHHHHHHHHH------HHHHHHHHHHh
Confidence 33666666666666666655 8899998877543 1111112233 45677777665
No 9
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=16.25 E-value=67 Score=23.67 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCCCCCCCcc
Q 016113 298 ERERMAAQVFQPMHRLPTM 316 (395)
Q Consensus 298 ~R~~lq~~VFgpG~~LPTM 316 (395)
-++.++.+.|.||..|||.
T Consensus 9 l~~~I~~g~~~~g~~lps~ 27 (64)
T PF00392_consen 9 LRQAILSGRLPPGDRLPSE 27 (64)
T ss_dssp HHHHHHTTSS-TTSBE--H
T ss_pred HHHHHHcCCCCCCCEeCCH
Confidence 3899999999999999975
No 10
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=15.39 E-value=99 Score=29.21 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCCCCCCc
Q 016113 298 ERERMAAQVFQPMHRLPT 315 (395)
Q Consensus 298 ~R~~lq~~VFgpG~~LPT 315 (395)
-++++++++|.||+.||+
T Consensus 16 i~~~I~~G~~~~G~~LPs 33 (236)
T COG2188 16 IRQRIESGELPPGDKLPS 33 (236)
T ss_pred HHHHHHhCCCCCCCCCCC
Confidence 499999999999999998
Done!