Query 016113
Match_columns 395
No_of_seqs 131 out of 281
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0p_A TAP42, type 2A phosphat 100.0 1.1E-45 3.9E-50 349.0 19.8 185 9-211 2-222 (234)
2 3qc1_A Immunoglobulin-binding 100.0 3.6E-45 1.2E-49 346.4 19.0 187 7-214 29-235 (243)
3 1vcs_A Vesicle transport throu 23.6 2.3E+02 0.0078 22.2 6.8 61 87-155 33-94 (102)
4 3k2t_A LMO2511 protein; lister 21.4 39 0.0013 24.1 1.6 12 311-322 8-19 (57)
5 3ka5_A Ribosome-associated pro 20.1 49 0.0017 24.3 1.9 11 312-322 9-19 (65)
6 2ld7_B Paired amphipathic heli 19.4 81 0.0028 23.6 3.1 24 97-120 24-49 (75)
7 3lyv_A Ribosome-associated fac 17.3 56 0.0019 24.0 1.7 12 311-322 9-20 (66)
8 2dbo_A D-tyrosyl-tRNA(Tyr) dea 11.7 99 0.0034 26.4 1.9 70 42-113 42-118 (148)
9 4ham_A LMO2241 protein; struct 10.8 93 0.0032 25.2 1.4 19 298-316 23-41 (134)
10 1jke_A O145, D-Tyr-trnaTyr dea 9.6 81 0.0028 26.8 0.6 70 42-113 42-118 (145)
No 1
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-45 Score=349.05 Aligned_cols=185 Identities=23% Similarity=0.293 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHhh-h------hccCCCchHHHHHHHH-HHHHHHHHhhhhCCCCCCCCCcccccccchhhchhHHHhH
Q 016113 9 LPLPSLFERGRKIHQ-I------ATESGCDPDAVRKGCE-VLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGE 80 (395)
Q Consensus 9 ~sL~~lf~~~~~~~~-~------~~~s~~~Q~~v~~~i~-~l~~~~~~v~~l~LFS~NE~leDIsT~~L~yLllpy~lg~ 80 (395)
.||+++|..|+++|. . +.+|++||+.|+++|. .|+.|+.+|+++||||+||+||||+|++|+||+||||||.
T Consensus 2 ~~L~~lF~~a~~~~~~~le~~~~~~~s~~~Q~~v~~~i~~~le~~~~~v~~l~LFS~NE~leDIsT~~L~yLlvpy~Lg~ 81 (234)
T 2v0p_A 2 ASVTEQFNDIISLYSTKLEHTSLRQDSPEYQGLLLSTIKKLLNLKTAIFDRLALFSTNETIDDVSTASIKFLAVDYYLGL 81 (234)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCSSCTTCHHHHHHHHHHHHHHHHHHHHHHTTSCC-----CGGGSCGGGGGGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCcccccccchHHHhHHHHHHH
Confidence 589999999999887 4 4577889999999999 9999999999999999999999999999999999999999
Q ss_pred hhchhch---------hhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHhhhC-------------------CCcchHH
Q 016113 81 LIEKIAQ---------DDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQA-------------------KPTAFTD 132 (395)
Q Consensus 81 L~~k~~~---------~~R~~~L~~A~~~~~~FL~~l~~Y~il~~~~~~~~~~~-------------------~~~~~a~ 132 (395)
|++++.+ .+|+.+|+.|+.||.+||++|++|||+++++...+... .+.+|+.
T Consensus 82 L~~k~~~~~~~~~~~~~~R~~~L~~A~~~~~~FL~~l~~y~ll~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~ 161 (234)
T 2v0p_A 82 LISRRQSNDSDVAQRQSMKLIYLKKSVESFINFLTLLQDYKLLDPLVGEKLGNFKDRYNPQLSELYAQPKNNKDLSGAQL 161 (234)
T ss_dssp HHTTCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHTCSSTTSCCHHHHSCCCSSTTCHHHHHH
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhhccccchhhhhccccccccccccHHH
Confidence 9999865 68999999999999999999999999999887654431 1458999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016113 133 QRARKIARFKRQRAAESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKKEEDMLSA 211 (395)
Q Consensus 133 ~R~~KI~rfK~eKeL~~kL~~L~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~~E~elL~~ 211 (395)
+|+.||+|||++|+|+++|+.|+++ ++++.+ +++|||.+|++||++|++|+++.-.+|-++
T Consensus 162 ~R~~KI~rfK~eKel~~kL~~L~~~----------------~~~~~~--D~~deE~~Re~~l~~L~~~~~~s~~~Lesi 222 (234)
T 2v0p_A 162 KRKEKIELFQRNKEISTKLHCLELE----------------LKNNDE--DHDHDELLRELYLMRLHHFSLDTINNIEQN 222 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------C------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------Hhcccc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 223222 345789999999999999999844444333
No 2
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=100.00 E-value=3.6e-45 Score=346.37 Aligned_cols=187 Identities=30% Similarity=0.444 Sum_probs=154.9
Q ss_pred CCCCHHHHHHHHHHHhhh------hccCCCchHHHHHHHHHHHHHHHHhhhhCCCCCCCCCcccccccchhhchhHHHhH
Q 016113 7 EELPLPSLFERGRKIHQI------ATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGE 80 (395)
Q Consensus 7 ~~~sL~~lf~~~~~~~~~------~~~s~~~Q~~v~~~i~~l~~~~~~v~~l~LFS~NE~leDIsT~~L~yLllpy~lg~ 80 (395)
.+.+|+++|..|+++|.. +.+|++||++|+++|..|+.|+.+|++++|||+||+||||+|++|+||+||||||.
T Consensus 29 ~~~~L~~lF~~a~~~~~~le~~~~~~~S~~~Q~~v~~~i~~le~~~~~v~~l~LFS~NE~leDIsT~~LkyLlvpy~Lg~ 108 (243)
T 3qc1_A 29 LLPRLPELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTDLKYLMVPALQGA 108 (243)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSSCSTTSCTTTGGGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccccccchHhhHHHHHHH
Confidence 456999999999998863 56888999999999999999999999999999999999999999999999999999
Q ss_pred hhchhchh-hHHHHHHHHHHHHHHHHHHHHhcCCCChH----HHHHhhh---------CCCcchHHHHHHHHHHHHHHHH
Q 016113 81 LIEKIAQD-DRLQILKASQAKLKEFISFCEIMELVPEE----ELEAVAQ---------AKPTAFTDQRARKIARFKRQRA 146 (395)
Q Consensus 81 L~~k~~~~-~R~~~L~~A~~~~~~FL~~l~~Y~il~~~----~~~~~~~---------~~~~~~a~~R~~KI~rfK~eKe 146 (395)
|++|+.+. .|+.+|+.|+.||.+||++|++|||++++ ....... ..+.+|+.+|++||+|||++|+
T Consensus 109 L~~k~~~~~~Rl~~L~~A~~~~~~FL~~l~~Y~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~rR~~KI~rfK~eKe 188 (243)
T 3qc1_A 109 LTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKE 188 (243)
T ss_dssp HHTTCCCGGGHHHHHHHHHHHHHHHHTTCCCCC-----------------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccchhhhcccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 99998655 59999999999999999999999999652 1111111 0245899999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 016113 147 AESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKKEEDMLSAVKE 214 (395)
Q Consensus 147 L~~kL~~L~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~~E~elL~~~~~ 214 (395)
|++||+.|++..+ + +++|||.+|++||++|++|+++.-.+|-++..+
T Consensus 189 Le~kL~~L~~~~e----------------~-----~~~DeE~~Re~yL~~L~l~~~~s~~~Lesi~~E 235 (243)
T 3qc1_A 189 VEHRLSALKSAVE----------------S-----GQADDERVREYHLLHLRRWIAVSLEELESIDQE 235 (243)
T ss_dssp HHHHHHHHHHHHH----------------H-----TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------------c-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988543 2 234899999999999999999955555554444
No 3
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.62 E-value=2.3e+02 Score=22.16 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHhhhCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 016113 87 QDDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQAKPTAFTDQRARKIARFKRQ-RAAESKLQEIK 155 (395)
Q Consensus 87 ~~~R~~~L~~A~~~~~~FL~~l~~Y~il~~~~~~~~~~~~~~~~a~~R~~KI~rfK~e-KeL~~kL~~L~ 155 (395)
...|...|..+...+.+=-..+...++- .+..+...-..=+.||..||.+ ..|+..+..++
T Consensus 33 geerk~~i~~ie~~l~EA~ell~qMelE--------~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 33 PDEKKQMVANVEKQLEEARELLEQMDLE--------VREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHH--------HTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888777777766540 0111111122336899999986 34444444443
No 4
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.43 E-value=39 Score=24.11 Aligned_cols=12 Identities=42% Similarity=0.349 Sum_probs=8.1
Q ss_pred CCCCcccHHHHH
Q 016113 311 HRLPTMSIEEAG 322 (395)
Q Consensus 311 ~~LPTMTVdE~~ 322 (395)
+.+|+|||||..
T Consensus 8 ~~~kpmsveEAv 19 (57)
T 3k2t_A 8 FSLKPMDSEEAV 19 (57)
T ss_dssp ---CCBCHHHHH
T ss_pred ccCCCCCHHHHH
Confidence 379999999974
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=20.12 E-value=49 Score=24.28 Aligned_cols=11 Identities=45% Similarity=0.359 Sum_probs=9.7
Q ss_pred CCCcccHHHHH
Q 016113 312 RLPTMSIEEAG 322 (395)
Q Consensus 312 ~LPTMTVdE~~ 322 (395)
.+|+|||||..
T Consensus 9 ~~kpMsveEAv 19 (65)
T 3ka5_A 9 AIKPMSEEEAV 19 (65)
T ss_dssp CCSCBCHHHHH
T ss_pred cCCCCCHHHHH
Confidence 78999999974
No 6
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=19.40 E-value=81 Score=23.60 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhc--CCCChHHHH
Q 016113 97 SQAKLKEFISFCEIM--ELVPEEELE 120 (395)
Q Consensus 97 A~~~~~~FL~~l~~Y--~il~~~~~~ 120 (395)
.+.-|.+||+.|+.| ++|+..++-
T Consensus 24 ~~~~Y~eFLk~lnlf~q~~Id~~eLv 49 (75)
T 2ld7_B 24 SAEAYENFLRCLVIFNQEVISRAELV 49 (75)
T ss_dssp SHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CHHHHHHHHHHHHHhhhcCcCHHHHH
Confidence 357899999999999 889987754
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=17.34 E-value=56 Score=24.02 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=10.2
Q ss_pred CCCCcccHHHHH
Q 016113 311 HRLPTMSIEEAG 322 (395)
Q Consensus 311 ~~LPTMTVdE~~ 322 (395)
+.+|+|||||..
T Consensus 9 ~~~kpMsveEAv 20 (66)
T 3lyv_A 9 VTLKPMDVEEAR 20 (66)
T ss_dssp CCCCEECHHHHH
T ss_pred ccCCCCCHHHHH
Confidence 379999999973
No 8
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=11.75 E-value=99 Score=26.37 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=40.3
Q ss_pred HHHHHHHhhhhCCCCCCCCCcccccccc--hhhchhHHHhHhhchhchhhHHH-----HHHHHHHHHHHHHHHHHhcCC
Q 016113 42 LEKCEDMVGKLGLFSSNETKDDISTANL--KYILVPYFLGELIEKIAQDDRLQ-----ILKASQAKLKEFISFCEIMEL 113 (395)
Q Consensus 42 l~~~~~~v~~l~LFS~NE~leDIsT~~L--~yLllpy~lg~L~~k~~~~~R~~-----~L~~A~~~~~~FL~~l~~Y~i 113 (395)
...+.+-|-.|-||++.+.-=..|-.++ ..|+|+= -.|+......+|.. -=..|+.+|..|+..|+..++
T Consensus 42 ~~~l~~Kil~lRif~De~gkmn~Sv~d~~g~iL~VSQ--FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~g~ 118 (148)
T 2dbo_A 42 IEKLVNKILNLRIFEDERGKFQYSVLDIKGEILVVSQ--FTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESGL 118 (148)
T ss_dssp HHHHHHHHHHCCCBCCSSCSSCBCTTTTTCEEEEEEC--GGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcEEeccCCCCCcccCHHHcCCCEEEEEe--eecccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3445666777999987443222333333 3455553 34444322112222 227899999999999998764
No 9
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=10.76 E-value=93 Score=25.22 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCCCCCCCcc
Q 016113 298 ERERMAAQVFQPMHRLPTM 316 (395)
Q Consensus 298 ~R~~lq~~VFgpG~~LPTM 316 (395)
-|+.+..+.|.||..||+-
T Consensus 23 i~~~I~~G~l~pG~~LPse 41 (134)
T 4ham_A 23 IKEQVVKGVLQEGEKILSI 41 (134)
T ss_dssp HHHHHHHTSSCTTCEECCH
T ss_pred HHHHHHcCCCCCCCCCccH
Confidence 4999999999999999974
No 10
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=9.64 E-value=81 Score=26.84 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=40.0
Q ss_pred HHHHHHHhhhhCCCCCCCCCcccccccc--hhhchhHHHhHhhchhchhhHHH-----HHHHHHHHHHHHHHHHHhcCC
Q 016113 42 LEKCEDMVGKLGLFSSNETKDDISTANL--KYILVPYFLGELIEKIAQDDRLQ-----ILKASQAKLKEFISFCEIMEL 113 (395)
Q Consensus 42 l~~~~~~v~~l~LFS~NE~leDIsT~~L--~yLllpy~lg~L~~k~~~~~R~~-----~L~~A~~~~~~FL~~l~~Y~i 113 (395)
...+.+-|-.|-||++.+.-=..|-.++ ..|+|+= -.|+......+|.. -=..|+.+|..|+..|+..++
T Consensus 42 ~~~l~~Ki~~lRif~de~gkmn~Sv~d~~g~iL~VSQ--FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~~~ 118 (145)
T 1jke_A 42 ANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQ--FTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEM 118 (145)
T ss_dssp HHHHHHHHHHCCCEECTTSCEEECTTTTTCEEEEEEC--GGGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhEEeccCCCCCccCCHHHcCCCEEEEEc--cccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3445666777999987543222232222 3455553 23444332112222 227899999999999998764
Done!