Query 016113
Match_columns 395
No_of_seqs 131 out of 281
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 08:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016113.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016113hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bwga1 a.4.5.6 (A:5-82) Trans 19.8 25 0.0018 24.3 2.1 19 298-316 7-25 (78)
2 d1z84a1 d.13.1.2 (A:23-195) Ga 13.6 67 0.0049 25.7 3.6 16 306-321 106-123 (173)
3 d2pqrb1 a.118.8.1 (B:5-128) Mi 11.8 2.1E+02 0.015 21.4 6.0 72 7-107 31-102 (124)
4 d1hw1a1 a.4.5.6 (A:5-78) Fatty 10.7 54 0.004 22.4 1.8 18 299-316 13-30 (74)
5 d2h5na1 a.287.1.2 (A:1-132) Hy 10.7 40 0.0029 24.8 1.1 10 312-321 117-126 (132)
6 d1v4ra1 a.4.5.6 (A:1-100) Tran 10.6 39 0.0029 24.5 1.0 18 298-315 18-35 (100)
7 d3deoa1 b.34.13.2 (A:85-128) C 10.5 32 0.0023 21.5 0.4 9 376-384 20-28 (44)
8 d1jkea_ c.110.1.1 (A:) D-Tyr t 10.0 34 0.0024 27.1 0.4 71 41-113 41-118 (145)
9 d2ahob1 a.60.14.1 (B:85-175) E 9.4 1.7E+02 0.012 20.6 4.3 25 132-156 4-28 (91)
10 d1soxa2 d.120.1.1 (A:3-93) Sul 8.8 51 0.0037 23.4 1.0 10 312-321 1-10 (91)
No 1
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=19.77 E-value=25 Score=24.31 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCCCCCCcc
Q 016113 298 ERERMAAQVFQPMHRLPTM 316 (395)
Q Consensus 298 ~R~~lq~~VFgpG~~LPTM 316 (395)
-++.+..+.|.||..|||.
T Consensus 7 i~~~I~~g~l~~G~~LPse 25 (78)
T d3bwga1 7 IETYIEEHQLQQGDKLPVL 25 (78)
T ss_dssp HHHHHHHTTCCTTCBCCCH
T ss_pred HHHHHHcCCCCCcCCCcCH
Confidence 3889999999999999983
No 2
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.58 E-value=67 Score=25.66 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=14.5
Q ss_pred cCCCCC--CCCcccHHHH
Q 016113 306 VFQPMH--RLPTMSIEEA 321 (395)
Q Consensus 306 VFgpG~--~LPTMTVdE~ 321 (395)
||.|.| +|++||++++
T Consensus 106 i~sp~H~~~l~~~~~e~i 123 (173)
T d1z84a1 106 IESPVHSIQLSDIDPVGI 123 (173)
T ss_dssp ECCSSSSCCGGGSCHHHH
T ss_pred EeCccccCChhhCCHHHH
Confidence 689999 7999999987
No 3
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.78 E-value=2.1e+02 Score=21.37 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHHHHHHhhhhCCCCCCCCCcccccccchhhchhHHHhHhhchhc
Q 016113 7 EELPLPSLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIEKIA 86 (395)
Q Consensus 7 ~~~sL~~lf~~~~~~~~~~~~s~~~Q~~v~~~i~~l~~~~~~v~~l~LFS~NE~leDIsT~~L~yLllpy~lg~L~~k~~ 86 (395)
...|+...|.-||.+.. +.+.+.+..+|..|+.+.+.. .+-..+.| ||||-.+-++
T Consensus 31 ~~~s~qt~F~YAw~Lv~-----S~~~~d~~~gI~lLe~~~~~~------------p~~~rd~l------Y~Lav~yykl- 86 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIK-----STDVNDERLGVKILTDIYKEA------------ESRRRECL------YYLTIGCYKL- 86 (124)
T ss_dssp GGSCHHHHHHHHHHHHH-----SSCHHHHHHHHHHHHHHHHHC------------GGGHHHHH------HHHHHHHHHH-
T ss_pred CCCCcchHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHhcC------------chhHHHHH------HHHHHHHHHH-
Confidence 34677788888887643 246788899999997765421 11123344 4444444443
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 016113 87 QDDRLQILKASQAKLKEFISF 107 (395)
Q Consensus 87 ~~~R~~~L~~A~~~~~~FL~~ 107 (395)
.-...|..|+..+|..
T Consensus 87 -----gdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 87 -----GEYSMAKRYVDTLFEH 102 (124)
T ss_dssp -----TCHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHcc
Confidence 3357777777777764
No 4
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.74 E-value=54 Score=22.37 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCCCCCCcc
Q 016113 299 RERMAAQVFQPMHRLPTM 316 (395)
Q Consensus 299 R~~lq~~VFgpG~~LPTM 316 (395)
++.+..+.|.||..||+.
T Consensus 13 ~~~I~~g~~~~G~~LPs~ 30 (74)
T d1hw1a1 13 IESIWNNRFPPGTILPAE 30 (74)
T ss_dssp HHHHHTTSSCTTSBCCCH
T ss_pred HHHHHcCCCCCcCCCccH
Confidence 889999999999999984
No 5
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=10.73 E-value=40 Score=24.77 Aligned_cols=10 Identities=60% Similarity=0.866 Sum_probs=8.6
Q ss_pred CCCcccHHHH
Q 016113 312 RLPTMSIEEA 321 (395)
Q Consensus 312 ~LPTMTVdE~ 321 (395)
.||||||=|.
T Consensus 117 glptmtvmea 126 (132)
T d2h5na1 117 GLPTMTVMEA 126 (132)
T ss_dssp TCCCCCHHHH
T ss_pred CCchhHHHHH
Confidence 6999999875
No 6
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=10.58 E-value=39 Score=24.49 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCCCCCc
Q 016113 298 ERERMAAQVFQPMHRLPT 315 (395)
Q Consensus 298 ~R~~lq~~VFgpG~~LPT 315 (395)
-|+.+..+.|.||..||+
T Consensus 18 i~~~I~~g~l~~G~~LPs 35 (100)
T d1v4ra1 18 FRTLIKSGELAPGDTLPS 35 (100)
T ss_dssp HHHHTTTTSCCTTSBCCC
T ss_pred HHHHHHcCCCCCcCCCcc
Confidence 499999999999999996
No 7
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.49 E-value=32 Score=21.46 Aligned_cols=9 Identities=33% Similarity=0.808 Sum_probs=6.0
Q ss_pred ccCccCCCC
Q 016113 376 DDWKDDNPR 384 (395)
Q Consensus 376 Dd~KD~npR 384 (395)
=+|||.|+-
T Consensus 20 iEWkD~h~p 28 (44)
T d3deoa1 20 IEWKDGHSP 28 (44)
T ss_dssp EEETTCCCC
T ss_pred EEeccCCCC
Confidence 367887763
No 8
>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]}
Probab=9.99 E-value=34 Score=27.14 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhhCCCCCCCCCcccccccc--hhhchhHHHhHhhchhchhh-----HHHHHHHHHHHHHHHHHHHHhcCC
Q 016113 41 VLEKCEDMVGKLGLFSSNETKDDISTANL--KYILVPYFLGELIEKIAQDD-----RLQILKASQAKLKEFISFCEIMEL 113 (395)
Q Consensus 41 ~l~~~~~~v~~l~LFS~NE~leDIsT~~L--~yLllpy~lg~L~~k~~~~~-----R~~~L~~A~~~~~~FL~~l~~Y~i 113 (395)
....+.+-|-.+-||++.+.-=..|-.++ ..|+||=+ .|+......+ +..-=+.|+..|..|++.|+..++
T Consensus 41 ~~~~~~~Kil~lRiF~d~~gk~~~Sv~d~~geiLiVSQF--TL~a~~~KG~rPsF~~Aa~p~~A~~ly~~f~~~l~~~~~ 118 (145)
T d1jkea_ 41 KANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQF--TLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEM 118 (145)
T ss_dssp HHHHHHHHHHHCCCEECTTSCEEECTTTTTCEEEEEECG--GGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhheeecccccCCccCCHhHcCCcEEEeeee--eeeeeecCCCCceecccCCHHHHHHHHHHHHHHHHhcCC
Confidence 34455677778999998554433333333 45777755 4554322111 222347899999999999988764
No 9
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=9.44 E-value=1.7e+02 Score=20.59 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016113 132 DQRARKIARFKRQRAAESKLQEIKE 156 (395)
Q Consensus 132 ~~R~~KI~rfK~eKeL~~kL~~L~~ 156 (395)
.+|..||..||.++...+-|..+.+
T Consensus 4 ~qrr~k~~~~k~~qka~~il~~vAe 28 (91)
T d2ahob1 4 DERRKKNLQWKKIQRLDKILELVSQ 28 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999988866
No 10
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.75 E-value=51 Score=23.43 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=9.0
Q ss_pred CCCcccHHHH
Q 016113 312 RLPTMSIEEA 321 (395)
Q Consensus 312 ~LPTMTVdE~ 321 (395)
|||++|.+|.
T Consensus 1 slP~~T~~Ev 10 (91)
T d1soxa2 1 SYPEYTREEV 10 (91)
T ss_dssp CCCEECHHHH
T ss_pred CCCccCHHHH
Confidence 6999999986
Done!