Query 016114
Match_columns 395
No_of_seqs 1188 out of 1843
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 03:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 100.0 1.3E-36 2.9E-41 255.2 38.8 313 5-320 187-499 (508)
2 KOG1840 Kinesin light chain [C 100.0 2.4E-36 5.2E-41 253.7 39.2 328 35-366 175-502 (508)
3 KOG4626 O-linked N-acetylgluco 100.0 2.5E-39 5.4E-44 266.4 18.4 322 12-392 145-492 (966)
4 KOG4626 O-linked N-acetylgluco 100.0 6.9E-38 1.5E-42 257.9 20.5 323 11-392 110-458 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-29 2.4E-34 229.1 33.6 322 18-391 161-577 (615)
6 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-28 2.5E-33 222.5 35.0 321 16-389 126-541 (615)
7 PRK15174 Vi polysaccharide exp 100.0 8.5E-27 1.8E-31 209.6 31.9 313 10-389 69-385 (656)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3.3E-25 7.2E-30 211.9 31.1 311 13-383 563-898 (899)
9 PRK11447 cellulose synthase su 99.9 6.8E-25 1.5E-29 210.5 31.8 325 13-386 299-701 (1157)
10 KOG1130 Predicted G-alpha GTPa 99.9 4.1E-25 8.8E-30 174.6 24.5 332 22-374 22-373 (639)
11 PRK15174 Vi polysaccharide exp 99.9 1.6E-24 3.4E-29 195.0 30.9 303 20-389 45-351 (656)
12 PRK11788 tetratricopeptide rep 99.9 8.5E-24 1.8E-28 181.9 33.6 307 20-384 38-346 (389)
13 PRK11447 cellulose synthase su 99.9 4.3E-24 9.3E-29 205.0 33.5 319 22-387 274-668 (1157)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-24 4.3E-29 206.5 31.0 316 12-388 528-869 (899)
15 KOG1130 Predicted G-alpha GTPa 99.9 8.6E-24 1.9E-28 167.1 23.7 312 3-330 41-372 (639)
16 KOG0547 Translocase of outer m 99.9 8.5E-23 1.8E-27 164.7 27.0 338 14-394 112-575 (606)
17 KOG1126 DNA-binding cell divis 99.9 1E-23 2.2E-28 176.4 21.0 308 15-390 315-625 (638)
18 PRK11788 tetratricopeptide rep 99.9 4.6E-22 1E-26 171.2 30.4 279 60-389 36-315 (389)
19 PRK10049 pgaA outer membrane p 99.9 1.5E-21 3.2E-26 179.7 31.7 327 17-392 83-463 (765)
20 KOG1126 DNA-binding cell divis 99.9 3.8E-23 8.2E-28 173.0 19.0 276 9-343 345-620 (638)
21 PRK10049 pgaA outer membrane p 99.9 2.4E-21 5.1E-26 178.3 31.4 332 12-389 44-426 (765)
22 KOG2002 TPR-containing nuclear 99.9 2.7E-21 5.9E-26 168.4 29.3 340 8-389 155-529 (1018)
23 KOG2002 TPR-containing nuclear 99.9 1.1E-20 2.3E-25 164.7 31.1 344 14-385 267-675 (1018)
24 KOG1155 Anaphase-promoting com 99.9 1.2E-20 2.5E-25 151.6 28.4 305 22-385 232-536 (559)
25 PRK09782 bacteriophage N4 rece 99.9 7.9E-21 1.7E-25 175.3 30.2 311 14-389 373-710 (987)
26 PRK09782 bacteriophage N4 rece 99.9 9.3E-21 2E-25 174.9 28.6 295 9-375 467-763 (987)
27 KOG1155 Anaphase-promoting com 99.9 7.3E-20 1.6E-24 147.0 27.0 276 15-342 260-535 (559)
28 KOG1173 Anaphase-promoting com 99.9 4.8E-19 1E-23 145.9 26.0 275 17-343 244-518 (611)
29 KOG2076 RNA polymerase III tra 99.9 5.2E-18 1.1E-22 147.2 30.1 315 17-382 139-509 (895)
30 KOG1941 Acetylcholine receptor 99.8 3.1E-17 6.8E-22 128.2 30.6 349 20-389 9-364 (518)
31 PLN03218 maturation of RBCL 1; 99.8 1.8E-17 4E-22 154.4 34.5 309 18-383 438-746 (1060)
32 KOG0624 dsRNA-activated protei 99.8 6.9E-18 1.5E-22 130.9 26.3 322 12-391 33-376 (504)
33 PLN03218 maturation of RBCL 1; 99.8 2.2E-17 4.8E-22 153.9 34.9 311 17-384 472-782 (1060)
34 KOG0548 Molecular co-chaperone 99.8 3.6E-18 7.7E-23 140.2 25.5 329 20-393 5-463 (539)
35 KOG1173 Anaphase-promoting com 99.8 1.3E-18 2.8E-23 143.4 22.4 277 61-389 246-522 (611)
36 KOG2003 TPR repeat-containing 99.8 5.7E-19 1.2E-23 142.1 19.9 319 19-383 239-687 (840)
37 PF13429 TPR_15: Tetratricopep 99.8 4.6E-20 1E-24 150.5 12.8 265 64-385 13-277 (280)
38 PRK04841 transcriptional regul 99.8 1.8E-16 4E-21 151.1 39.2 352 20-390 412-765 (903)
39 COG2956 Predicted N-acetylgluc 99.8 6.8E-17 1.5E-21 124.4 28.8 304 22-383 40-345 (389)
40 PF13429 TPR_15: Tetratricopep 99.8 7.9E-20 1.7E-24 149.1 13.2 266 21-343 12-277 (280)
41 PRK12370 invasion protein regu 99.8 2.8E-17 6.1E-22 146.2 30.3 252 29-341 273-533 (553)
42 KOG1129 TPR repeat-containing 99.8 1.6E-18 3.6E-23 133.4 18.6 286 55-391 177-464 (478)
43 KOG2003 TPR repeat-containing 99.8 3.9E-17 8.4E-22 131.7 27.1 285 21-371 423-709 (840)
44 KOG1129 TPR repeat-containing 99.8 1.8E-19 3.9E-24 138.7 13.0 234 20-301 226-459 (478)
45 KOG0547 Translocase of outer m 99.8 3.3E-18 7.2E-23 138.6 20.9 246 15-304 324-570 (606)
46 COG3063 PilF Tfp pilus assembl 99.8 2.2E-17 4.7E-22 121.2 23.1 206 55-300 31-236 (250)
47 TIGR00540 hemY_coli hemY prote 99.8 1.4E-16 3.1E-21 136.6 32.1 319 17-389 84-403 (409)
48 cd05804 StaR_like StaR_like; a 99.8 1.5E-16 3.3E-21 135.3 32.0 339 13-392 2-343 (355)
49 PRK12370 invasion protein regu 99.8 6.4E-17 1.4E-21 143.9 29.9 253 73-386 275-536 (553)
50 PLN03081 pentatricopeptide (PP 99.8 2.4E-17 5.2E-22 151.6 25.6 308 18-385 190-557 (697)
51 TIGR02521 type_IV_pilW type IV 99.8 5.4E-17 1.2E-21 129.8 24.5 204 56-299 28-231 (234)
52 TIGR02521 type_IV_pilW type IV 99.8 5.9E-17 1.3E-21 129.5 24.0 206 12-257 26-231 (234)
53 KOG1174 Anaphase-promoting com 99.8 1.3E-16 2.8E-21 126.9 24.1 316 9-392 190-507 (564)
54 PRK11189 lipoprotein NlpI; Pro 99.8 6E-17 1.3E-21 132.3 23.3 214 5-258 52-265 (296)
55 COG3063 PilF Tfp pilus assembl 99.8 9.3E-17 2E-21 117.9 21.2 203 98-341 32-234 (250)
56 COG2956 Predicted N-acetylgluc 99.8 8.4E-16 1.8E-20 118.5 27.3 272 65-388 41-314 (389)
57 PRK11189 lipoprotein NlpI; Pro 99.8 3.8E-16 8.2E-21 127.6 26.6 228 29-300 38-265 (296)
58 KOG2076 RNA polymerase III tra 99.8 6.7E-16 1.5E-20 134.4 28.9 328 8-379 164-549 (895)
59 PRK04841 transcriptional regul 99.8 5E-15 1.1E-19 141.4 38.1 312 16-346 451-763 (903)
60 PRK10747 putative protoheme IX 99.8 2.6E-15 5.5E-20 128.2 31.1 304 17-387 84-392 (398)
61 KOG1941 Acetylcholine receptor 99.8 4.6E-15 1E-19 116.3 28.9 308 19-341 45-358 (518)
62 PLN03081 pentatricopeptide (PP 99.8 1.5E-16 3.2E-21 146.4 23.1 299 17-381 158-487 (697)
63 PRK14574 hmsH outer membrane p 99.8 2.8E-15 6.1E-20 136.3 28.9 183 191-392 331-520 (822)
64 KOG0548 Molecular co-chaperone 99.8 8.4E-15 1.8E-19 120.7 28.2 242 103-381 226-485 (539)
65 PRK14574 hmsH outer membrane p 99.7 7.3E-15 1.6E-19 133.6 30.3 333 13-390 30-450 (822)
66 KOG4162 Predicted calmodulin-b 99.7 1.9E-14 4.1E-19 123.5 29.8 331 15-388 392-786 (799)
67 KOG1125 TPR repeat-containing 99.7 3.8E-16 8.3E-21 129.5 19.1 266 21-330 289-559 (579)
68 KOG0624 dsRNA-activated protei 99.7 1.7E-14 3.7E-19 112.4 26.8 283 11-343 66-370 (504)
69 KOG1174 Anaphase-promoting com 99.7 8.4E-15 1.8E-19 116.8 24.6 270 14-343 229-500 (564)
70 PLN03077 Protein ECB2; Provisi 99.7 1.3E-14 2.7E-19 137.0 29.4 163 190-384 557-719 (857)
71 TIGR00540 hemY_coli hemY prote 99.7 1.5E-14 3.3E-19 124.1 27.3 282 17-346 118-402 (409)
72 KOG1125 TPR repeat-containing 99.7 1.8E-15 3.9E-20 125.6 18.9 269 64-375 290-561 (579)
73 PLN03077 Protein ECB2; Provisi 99.7 3.4E-14 7.4E-19 134.1 30.2 165 189-382 426-651 (857)
74 KOG0550 Molecular chaperone (D 99.7 3.9E-15 8.4E-20 118.6 19.3 293 13-344 45-351 (486)
75 cd05804 StaR_like StaR_like; a 99.7 6.2E-14 1.3E-18 119.3 27.8 298 16-349 42-342 (355)
76 PRK10747 putative protoheme IX 99.7 1.8E-13 3.8E-18 117.0 30.3 266 21-345 122-392 (398)
77 TIGR03302 OM_YfiO outer membra 99.7 2.5E-14 5.5E-19 113.9 21.9 182 12-215 28-231 (235)
78 TIGR03302 OM_YfiO outer membra 99.7 5.7E-14 1.2E-18 111.9 22.7 182 96-299 28-231 (235)
79 KOG0550 Molecular chaperone (D 99.7 1.1E-14 2.4E-19 116.0 18.1 290 57-388 47-353 (486)
80 KOG1156 N-terminal acetyltrans 99.7 1.7E-12 3.8E-17 109.6 29.9 324 12-387 36-436 (700)
81 KOG0495 HAT repeat protein [RN 99.6 8.9E-13 1.9E-17 111.5 27.1 324 9-392 508-853 (913)
82 PF14938 SNAP: Soluble NSF att 99.6 4.8E-13 1E-17 108.6 24.0 229 100-347 34-263 (282)
83 PF14938 SNAP: Soluble NSF att 99.6 5.7E-13 1.2E-17 108.2 22.9 227 57-296 33-262 (282)
84 KOG2376 Signal recognition par 99.6 7.3E-11 1.6E-15 99.0 34.0 365 2-391 95-493 (652)
85 KOG4162 Predicted calmodulin-b 99.6 2.6E-12 5.7E-17 110.6 25.3 289 18-346 479-786 (799)
86 KOG0495 HAT repeat protein [RN 99.6 3.5E-12 7.6E-17 108.0 22.7 317 14-390 547-885 (913)
87 PLN02789 farnesyltranstransfer 99.5 2E-11 4.3E-16 99.7 25.8 221 14-284 34-268 (320)
88 PF12569 NARP1: NMDA receptor- 99.5 6.7E-11 1.4E-15 102.3 29.0 317 17-391 4-340 (517)
89 KOG1127 TPR repeat-containing 99.5 6E-12 1.3E-16 111.4 21.7 330 12-386 487-914 (1238)
90 PLN02789 farnesyltranstransfer 99.5 9E-11 1.9E-15 95.9 26.5 212 65-326 43-268 (320)
91 KOG1156 N-terminal acetyltrans 99.5 1.2E-09 2.6E-14 92.9 31.5 319 12-381 70-464 (700)
92 KOG1127 TPR repeat-containing 99.5 2E-10 4.4E-15 102.0 27.4 235 72-348 471-705 (1238)
93 PRK15179 Vi polysaccharide bio 99.5 2.6E-11 5.6E-16 108.8 22.5 170 17-217 49-218 (694)
94 PF13424 TPR_12: Tetratricopep 99.5 1.3E-12 2.8E-17 83.9 10.6 77 13-90 1-77 (78)
95 COG3071 HemY Uncharacterized e 99.5 3.8E-09 8.3E-14 84.8 31.8 303 20-386 87-391 (400)
96 KOG3785 Uncharacterized conser 99.5 2.4E-10 5.2E-15 90.1 24.4 135 17-167 57-209 (557)
97 PF13424 TPR_12: Tetratricopep 99.4 1.1E-12 2.4E-17 84.2 8.5 78 309-388 1-78 (78)
98 PRK15179 Vi polysaccharide bio 99.4 1.1E-10 2.4E-15 104.8 23.3 133 187-344 86-218 (694)
99 KOG3785 Uncharacterized conser 99.4 1.9E-10 4.1E-15 90.7 19.5 159 27-211 32-209 (557)
100 KOG4340 Uncharacterized conser 99.4 8.4E-09 1.8E-13 79.7 27.5 333 9-389 36-447 (459)
101 PRK15359 type III secretion sy 99.4 1.4E-11 2.9E-16 89.0 11.9 110 20-153 27-136 (144)
102 PRK15359 type III secretion sy 99.4 3E-11 6.6E-16 87.2 13.6 110 37-173 13-122 (144)
103 KOG2047 mRNA splicing factor [ 99.4 1.4E-08 3E-13 86.6 30.5 337 13-383 244-613 (835)
104 KOG1839 Uncharacterized protei 99.3 1.7E-10 3.8E-15 105.8 19.8 361 24-389 672-1132(1236)
105 KOG2376 Signal recognition par 99.3 8.5E-08 1.8E-12 81.1 33.8 331 9-378 167-513 (652)
106 PF12569 NARP1: NMDA receptor- 99.3 7.2E-09 1.6E-13 90.0 27.8 263 13-305 34-339 (517)
107 PRK14720 transcript cleavage f 99.3 1.1E-09 2.4E-14 99.5 23.5 250 9-300 23-283 (906)
108 PRK10370 formate-dependent nit 99.3 2.2E-10 4.7E-15 87.4 16.4 102 56-173 70-174 (198)
109 COG5010 TadD Flp pilus assembl 99.3 1.9E-10 4.1E-15 87.2 15.1 164 56-254 64-227 (257)
110 COG3071 HemY Uncharacterized e 99.3 4E-08 8.6E-13 79.1 28.2 274 14-346 115-393 (400)
111 COG5010 TadD Flp pilus assembl 99.3 3.4E-10 7.3E-15 85.8 15.5 165 13-212 63-227 (257)
112 PRK14720 transcript cleavage f 99.3 3.2E-09 6.8E-14 96.7 24.3 250 95-385 25-283 (906)
113 PRK15363 pathogenicity island 99.3 4.7E-10 1E-14 79.3 15.0 107 9-131 26-133 (157)
114 PF13525 YfiO: Outer membrane 99.3 6.5E-09 1.4E-13 80.1 22.8 167 142-330 4-195 (203)
115 PRK10370 formate-dependent nit 99.3 2.7E-09 5.9E-14 81.4 20.0 150 23-217 22-174 (198)
116 KOG3617 WD40 and TPR repeat-co 99.3 5E-08 1.1E-12 85.8 29.7 260 96-389 853-1178(1416)
117 KOG1839 Uncharacterized protei 99.3 2.9E-09 6.2E-14 98.1 23.0 209 147-359 936-1144(1236)
118 CHL00033 ycf3 photosystem I as 99.3 6.1E-10 1.3E-14 83.4 15.9 117 13-142 31-154 (168)
119 PF13525 YfiO: Outer membrane 99.3 4E-09 8.7E-14 81.2 20.6 169 187-376 5-198 (203)
120 KOG1128 Uncharacterized conser 99.2 8.2E-10 1.8E-14 95.2 17.5 227 14-305 395-621 (777)
121 PRK10866 outer membrane biogen 99.2 1.6E-08 3.4E-13 79.8 23.4 188 16-253 31-236 (243)
122 PRK15363 pathogenicity island 99.2 6.4E-10 1.4E-14 78.6 13.8 103 56-174 32-134 (157)
123 PRK10866 outer membrane biogen 99.2 2.9E-08 6.3E-13 78.3 24.7 187 100-337 31-235 (243)
124 CHL00033 ycf3 photosystem I as 99.2 1.7E-09 3.7E-14 80.9 16.2 117 140-271 32-155 (168)
125 KOG1585 Protein required for f 99.2 1.6E-07 3.5E-12 70.5 25.9 226 53-294 25-250 (308)
126 KOG2047 mRNA splicing factor [ 99.2 1.2E-07 2.6E-12 81.1 27.5 317 26-386 356-688 (835)
127 KOG1128 Uncharacterized conser 99.2 4.2E-09 9.1E-14 91.0 19.2 226 57-348 396-621 (777)
128 TIGR02552 LcrH_SycD type III s 99.2 1.8E-09 3.8E-14 77.9 14.5 103 55-173 13-115 (135)
129 PF09976 TPR_21: Tetratricopep 99.2 7.7E-09 1.7E-13 75.1 17.9 123 113-256 23-145 (145)
130 TIGR02552 LcrH_SycD type III s 99.2 1.6E-09 3.5E-14 78.1 14.1 108 7-130 7-114 (135)
131 PF09976 TPR_21: Tetratricopep 99.2 9.1E-09 2E-13 74.8 17.7 132 20-170 14-145 (145)
132 PRK02603 photosystem I assembl 99.2 4.1E-09 8.8E-14 79.1 16.1 112 12-136 30-148 (172)
133 KOG1585 Protein required for f 99.2 1.3E-07 2.8E-12 71.1 23.3 228 9-252 23-250 (308)
134 KOG2300 Uncharacterized conser 99.2 1.2E-06 2.7E-11 72.6 30.7 354 17-391 46-520 (629)
135 KOG0553 TPR repeat-containing 99.2 9E-10 1.9E-14 85.2 12.1 102 13-130 77-178 (304)
136 KOG4340 Uncharacterized conser 99.1 1.8E-08 3.9E-13 77.9 18.8 223 70-337 21-264 (459)
137 KOG3060 Uncharacterized conser 99.1 2.9E-07 6.3E-12 69.7 24.5 192 74-301 27-221 (289)
138 KOG3060 Uncharacterized conser 99.1 2.5E-07 5.4E-12 70.0 24.1 194 29-258 24-220 (289)
139 TIGR02795 tol_pal_ybgF tol-pal 99.1 5.1E-09 1.1E-13 73.7 13.4 103 18-130 3-105 (119)
140 PF04733 Coatomer_E: Coatomer 99.1 1.8E-08 3.9E-13 81.5 18.0 261 26-356 10-273 (290)
141 KOG1915 Cell cycle control pro 99.1 3.4E-06 7.4E-11 70.0 31.9 323 20-389 76-437 (677)
142 KOG1915 Cell cycle control pro 99.1 3.7E-06 8E-11 69.8 30.8 221 139-390 318-541 (677)
143 TIGR02795 tol_pal_ybgF tol-pal 99.1 7.3E-09 1.6E-13 72.9 13.5 104 60-173 3-106 (119)
144 PRK02603 photosystem I assembl 99.1 2.1E-08 4.4E-13 75.4 16.4 115 182-309 30-151 (172)
145 COG2909 MalT ATP-dependent tra 99.1 4.2E-06 9E-11 75.0 31.9 341 13-382 343-685 (894)
146 KOG0553 TPR repeat-containing 99.1 1.1E-08 2.4E-13 79.3 14.3 101 56-172 78-178 (304)
147 KOG3617 WD40 and TPR repeat-co 99.0 5.7E-07 1.2E-11 79.4 25.9 258 66-384 807-1108(1416)
148 PF04733 Coatomer_E: Coatomer 99.0 1.1E-08 2.3E-13 82.8 14.4 241 11-312 29-272 (290)
149 KOG2300 Uncharacterized conser 99.0 1.4E-06 3E-11 72.3 25.7 255 29-296 287-552 (629)
150 PF12688 TPR_5: Tetratrico pep 99.0 2.1E-08 4.5E-13 68.7 12.9 102 102-215 2-103 (120)
151 PF10345 Cohesin_load: Cohesin 99.0 2.2E-05 4.8E-10 71.5 39.4 319 53-382 53-430 (608)
152 PF12688 TPR_5: Tetratrico pep 99.0 3.9E-08 8.5E-13 67.4 12.4 102 18-129 2-103 (120)
153 PLN03088 SGT1, suppressor of 98.9 2.2E-08 4.8E-13 84.1 13.2 95 20-130 5-99 (356)
154 PF10345 Cohesin_load: Cohesin 98.9 3.7E-05 8E-10 70.1 39.9 357 8-374 50-467 (608)
155 PF12895 Apc3: Anaphase-promot 98.9 1.1E-08 2.4E-13 66.5 8.8 83 30-127 2-84 (84)
156 COG4783 Putative Zn-dependent 98.9 1.3E-07 2.7E-12 78.5 16.3 128 187-339 306-433 (484)
157 PLN03088 SGT1, suppressor of 98.9 4.9E-08 1.1E-12 82.1 13.9 95 62-172 5-99 (356)
158 KOG0543 FKBP-type peptidyl-pro 98.9 1.2E-07 2.6E-12 77.1 14.9 142 16-173 207-356 (397)
159 PF12895 Apc3: Anaphase-promot 98.9 1.5E-08 3.3E-13 65.8 8.2 83 72-169 2-84 (84)
160 KOG1586 Protein required for f 98.9 2.7E-06 5.8E-11 63.8 19.8 177 66-256 41-222 (288)
161 PF13414 TPR_11: TPR repeat; P 98.9 3E-08 6.4E-13 61.8 8.4 64 101-172 3-67 (69)
162 PRK10803 tol-pal system protei 98.8 5.1E-08 1.1E-12 77.4 11.3 107 272-389 143-250 (263)
163 PRK10803 tol-pal system protei 98.8 1.6E-07 3.4E-12 74.7 14.0 104 230-344 143-247 (263)
164 PF13414 TPR_11: TPR repeat; P 98.8 4E-08 8.6E-13 61.2 8.3 64 59-130 3-67 (69)
165 COG4783 Putative Zn-dependent 98.8 4.8E-05 1E-09 63.7 31.1 152 140-343 303-454 (484)
166 KOG3616 Selective LIM binding 98.8 1.7E-05 3.6E-10 69.8 25.6 210 18-257 662-910 (1636)
167 KOG1586 Protein required for f 98.8 2.3E-06 4.9E-11 64.1 17.6 203 152-391 23-230 (288)
168 COG4785 NlpI Lipoprotein NlpI, 98.8 7.4E-06 1.6E-10 60.8 20.0 208 10-257 58-265 (297)
169 cd00189 TPR Tetratricopeptide 98.8 2.3E-07 4.9E-12 62.3 11.5 96 189-300 2-97 (100)
170 KOG1070 rRNA processing protei 98.8 1.7E-05 3.7E-10 74.4 26.0 210 56-301 1455-1664(1710)
171 KOG1070 rRNA processing protei 98.8 1.3E-05 2.8E-10 75.2 25.2 250 97-389 1454-1704(1710)
172 KOG0543 FKBP-type peptidyl-pro 98.8 4.8E-07 1.1E-11 73.6 14.5 138 191-344 212-356 (397)
173 COG4785 NlpI Lipoprotein NlpI, 98.8 5.5E-06 1.2E-10 61.4 18.4 206 54-300 60-266 (297)
174 PF13432 TPR_16: Tetratricopep 98.7 7.7E-08 1.7E-12 59.0 7.6 60 234-301 2-61 (65)
175 COG4105 ComL DNA uptake lipopr 98.7 1.7E-05 3.7E-10 61.0 21.5 170 143-335 34-225 (254)
176 cd00189 TPR Tetratricopeptide 98.7 1.3E-07 2.9E-12 63.5 9.5 96 61-172 2-97 (100)
177 COG2909 MalT ATP-dependent tra 98.7 7.1E-05 1.5E-09 67.4 27.7 265 62-339 418-684 (894)
178 KOG4555 TPR repeat-containing 98.7 3.7E-06 8E-11 56.7 14.2 99 104-216 46-144 (175)
179 PF08631 SPO22: Meiosis protei 98.7 0.0001 2.2E-09 60.0 25.7 255 112-383 4-273 (278)
180 PF13432 TPR_16: Tetratricopep 98.7 1.5E-07 3.3E-12 57.7 7.0 59 64-130 2-60 (65)
181 PRK15331 chaperone protein Sic 98.6 6.7E-07 1.4E-11 63.8 10.7 105 9-129 29-133 (165)
182 COG1729 Uncharacterized protei 98.6 1.2E-06 2.6E-11 67.9 12.5 102 232-344 144-245 (262)
183 KOG4555 TPR repeat-containing 98.6 1.3E-06 2.7E-11 59.0 10.9 104 274-390 46-149 (175)
184 COG4105 ComL DNA uptake lipopr 98.6 3.4E-05 7.3E-10 59.5 20.0 174 187-378 34-226 (254)
185 KOG1464 COP9 signalosome, subu 98.6 2.4E-05 5.1E-10 60.3 18.6 242 72-327 40-286 (440)
186 COG1729 Uncharacterized protei 98.6 2.7E-07 6E-12 71.3 8.2 105 274-389 144-248 (262)
187 PRK10153 DNA-binding transcrip 98.6 9.4E-06 2E-10 71.5 18.0 136 20-172 342-482 (517)
188 PRK15331 chaperone protein Sic 98.5 1.3E-06 2.9E-11 62.4 9.9 101 55-171 33-133 (165)
189 KOG1464 COP9 signalosome, subu 98.5 0.0001 2.2E-09 57.0 19.2 242 114-370 40-286 (440)
190 PRK10153 DNA-binding transcrip 98.5 1.1E-05 2.4E-10 71.0 16.3 132 60-216 340-482 (517)
191 COG4700 Uncharacterized protei 98.5 7.3E-05 1.6E-09 54.3 17.0 132 229-383 89-220 (251)
192 COG4235 Cytochrome c biogenesi 98.5 2.1E-05 4.5E-10 62.0 15.5 103 55-173 152-257 (287)
193 PF08631 SPO22: Meiosis protei 98.5 0.0005 1.1E-08 56.1 28.3 255 27-299 3-274 (278)
194 COG4235 Cytochrome c biogenesi 98.5 9.9E-06 2.1E-10 63.8 13.5 115 12-146 151-268 (287)
195 PRK11906 transcriptional regul 98.5 1.6E-05 3.6E-10 66.7 15.5 161 21-212 259-432 (458)
196 KOG3616 Selective LIM binding 98.4 0.00098 2.1E-08 59.2 31.5 211 146-387 664-913 (1636)
197 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.1E-05 2.4E-10 67.8 14.6 119 192-338 174-292 (395)
198 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.2E-05 2.6E-10 67.7 14.3 120 23-169 175-294 (395)
199 COG5159 RPN6 26S proteasome re 98.4 0.0003 6.5E-09 54.9 20.1 229 64-303 8-238 (421)
200 COG4700 Uncharacterized protei 98.4 0.00012 2.7E-09 53.1 16.5 136 59-218 89-224 (251)
201 PF13512 TPR_18: Tetratricopep 98.4 2.7E-05 5.9E-10 54.5 12.9 104 188-301 11-129 (142)
202 PF13512 TPR_18: Tetratricopep 98.4 1.7E-05 3.6E-10 55.5 11.7 90 229-328 10-99 (142)
203 KOG3081 Vesicle coat complex C 98.4 0.00055 1.2E-08 53.0 23.6 243 27-337 18-264 (299)
204 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 3.8E-06 8.2E-11 70.3 10.0 72 96-172 70-141 (453)
205 KOG3081 Vesicle coat complex C 98.4 0.00056 1.2E-08 52.9 20.9 153 102-295 109-265 (299)
206 KOG2796 Uncharacterized conser 98.4 0.00018 3.9E-09 55.4 17.9 140 59-217 177-316 (366)
207 PF13374 TPR_10: Tetratricopep 98.3 1.3E-06 2.8E-11 48.0 4.7 41 271-311 2-42 (42)
208 KOG4234 TPR repeat-containing 98.3 2.4E-05 5.2E-10 57.3 12.1 103 17-130 95-197 (271)
209 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 4.7E-06 1E-10 69.7 9.7 72 138-216 70-141 (453)
210 KOG2471 TPR repeat-containing 98.3 0.00012 2.6E-09 61.4 17.5 320 20-368 20-381 (696)
211 KOG2796 Uncharacterized conser 98.3 0.00074 1.6E-08 52.2 21.9 139 144-301 178-316 (366)
212 KOG4234 TPR repeat-containing 98.3 4.3E-05 9.3E-10 56.1 12.5 100 145-257 97-196 (271)
213 COG0457 NrfG FOG: TPR repeat [ 98.3 0.0012 2.6E-08 52.9 22.7 206 17-258 59-265 (291)
214 PF13374 TPR_10: Tetratricopep 98.2 3.2E-06 7E-11 46.4 4.7 41 229-269 2-42 (42)
215 COG3898 Uncharacterized membra 98.2 0.0019 4.1E-08 53.0 29.8 299 23-384 90-391 (531)
216 PF14559 TPR_19: Tetratricopep 98.2 7.4E-06 1.6E-10 50.7 6.5 53 70-130 2-54 (68)
217 PF14559 TPR_19: Tetratricopep 98.2 7.6E-06 1.7E-10 50.6 6.4 54 240-301 2-55 (68)
218 PRK11906 transcriptional regul 98.2 6.9E-05 1.5E-09 63.1 13.5 133 11-168 289-432 (458)
219 PF10300 DUF3808: Protein of u 98.2 0.0038 8.2E-08 55.0 30.4 178 155-358 200-391 (468)
220 PF13371 TPR_9: Tetratricopept 98.2 1.6E-05 3.5E-10 49.9 7.9 59 235-301 1-59 (73)
221 PF13371 TPR_9: Tetratricopept 98.2 1.9E-05 4.1E-10 49.6 8.0 57 66-130 2-58 (73)
222 PF10300 DUF3808: Protein of u 98.2 0.00097 2.1E-08 58.6 20.9 175 29-228 200-388 (468)
223 KOG2610 Uncharacterized conser 98.1 0.0016 3.5E-08 52.3 19.2 166 65-256 109-274 (491)
224 PF12968 DUF3856: Domain of Un 98.1 0.00094 2E-08 44.5 14.2 122 101-222 7-135 (144)
225 PF02259 FAT: FAT domain; Int 98.1 0.0053 1.1E-07 52.4 27.0 285 66-388 5-341 (352)
226 KOG2610 Uncharacterized conser 98.0 0.0042 9.2E-08 50.0 20.0 165 108-298 110-274 (491)
227 COG0457 NrfG FOG: TPR repeat [ 98.0 0.0041 8.8E-08 49.8 26.5 230 30-301 36-266 (291)
228 COG3898 Uncharacterized membra 98.0 0.0051 1.1E-07 50.6 27.0 279 7-343 112-392 (531)
229 KOG2471 TPR repeat-containing 98.0 0.00051 1.1E-08 57.8 14.8 245 59-325 100-381 (696)
230 PF12968 DUF3856: Domain of Un 98.0 0.0016 3.6E-08 43.4 16.3 118 58-176 6-133 (144)
231 KOG4648 Uncharacterized conser 98.0 8.4E-05 1.8E-09 59.4 9.4 94 63-172 101-194 (536)
232 KOG4648 Uncharacterized conser 98.0 4.2E-05 9.2E-10 61.1 7.8 95 20-130 100-194 (536)
233 KOG4642 Chaperone-dependent E3 98.0 0.0001 2.2E-09 55.8 9.2 103 16-134 9-111 (284)
234 PF03704 BTAD: Bacterial trans 97.9 0.0017 3.8E-08 47.2 15.3 111 20-138 9-133 (146)
235 PF04184 ST7: ST7 protein; In 97.9 0.005 1.1E-07 52.5 18.5 142 111-297 178-321 (539)
236 PF03704 BTAD: Bacterial trans 97.8 0.0019 4.1E-08 47.1 14.4 109 193-309 12-134 (146)
237 PF09986 DUF2225: Uncharacteri 97.8 0.00028 6.2E-09 54.4 10.3 102 283-386 89-195 (214)
238 PF09986 DUF2225: Uncharacteri 97.8 0.0015 3.2E-08 50.5 14.0 102 153-257 87-193 (214)
239 KOG0545 Aryl-hydrocarbon recep 97.8 0.00073 1.6E-08 51.6 11.7 107 16-130 177-293 (329)
240 COG2976 Uncharacterized protei 97.8 0.0041 8.9E-08 46.0 15.1 100 188-301 90-189 (207)
241 KOG4642 Chaperone-dependent E3 97.8 0.00017 3.7E-09 54.6 8.2 99 62-176 13-111 (284)
242 COG5159 RPN6 26S proteasome re 97.8 0.011 2.5E-07 46.4 25.4 228 21-259 7-236 (421)
243 COG2976 Uncharacterized protei 97.8 0.0069 1.5E-07 44.8 15.7 137 22-172 36-188 (207)
244 PF13176 TPR_7: Tetratricopept 97.8 4E-05 8.7E-10 40.1 3.3 33 358-390 1-33 (36)
245 PF13281 DUF4071: Domain of un 97.8 0.018 4E-07 48.2 22.3 207 30-258 112-334 (374)
246 KOG2041 WD40 repeat protein [G 97.7 0.029 6.2E-07 50.1 22.5 125 18-169 693-822 (1189)
247 PF04184 ST7: ST7 protein; In 97.7 0.024 5.2E-07 48.5 21.7 128 68-213 177-321 (539)
248 PF13281 DUF4071: Domain of un 97.7 0.023 4.9E-07 47.7 23.0 205 116-343 114-334 (374)
249 PF10602 RPN7: 26S proteasome 97.7 0.0068 1.5E-07 45.4 15.3 110 139-257 32-141 (177)
250 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00085 1.8E-08 53.6 10.6 107 13-131 77-183 (390)
251 PF10602 RPN7: 26S proteasome 97.7 0.0087 1.9E-07 44.9 15.6 111 97-216 32-142 (177)
252 PF00515 TPR_1: Tetratricopept 97.6 5E-05 1.1E-09 39.2 2.6 32 357-388 2-33 (34)
253 KOG0545 Aryl-hydrocarbon recep 97.6 0.00069 1.5E-08 51.7 9.0 113 272-393 179-301 (329)
254 KOG1463 26S proteasome regulat 97.6 0.025 5.4E-07 45.8 28.4 299 22-348 9-314 (411)
255 PF12862 Apc5: Anaphase-promot 97.6 0.0025 5.5E-08 42.1 10.7 81 111-195 8-89 (94)
256 PF13176 TPR_7: Tetratricopept 97.6 0.00031 6.7E-09 36.7 5.0 31 145-175 1-31 (36)
257 KOG2053 Mitochondrial inherita 97.6 0.063 1.4E-06 49.4 23.1 191 113-339 21-215 (932)
258 PF12862 Apc5: Anaphase-promot 97.6 0.0018 3.9E-08 42.8 9.7 82 239-322 8-90 (94)
259 KOG0551 Hsp90 co-chaperone CNS 97.5 0.0026 5.7E-08 51.0 11.3 105 141-259 79-183 (390)
260 KOG1550 Extracellular protein 97.5 0.066 1.4E-06 48.6 21.6 283 32-386 227-539 (552)
261 PF02259 FAT: FAT domain; Int 97.5 0.052 1.1E-06 46.4 27.9 131 139-283 142-304 (352)
262 PF00515 TPR_1: Tetratricopept 97.5 0.00036 7.9E-09 35.9 4.5 30 17-46 1-30 (34)
263 PF07719 TPR_2: Tetratricopept 97.4 0.00011 2.3E-09 37.9 2.1 32 357-388 2-33 (34)
264 PF05843 Suf: Suppressor of fo 97.4 0.0088 1.9E-07 48.9 14.0 136 231-388 3-139 (280)
265 PF07719 TPR_2: Tetratricopept 97.4 0.00055 1.2E-08 35.2 4.5 31 17-47 1-31 (34)
266 PF13428 TPR_14: Tetratricopep 97.4 0.00062 1.3E-08 37.5 4.8 42 60-109 2-43 (44)
267 PF13428 TPR_14: Tetratricopep 97.4 0.00054 1.2E-08 37.7 4.5 42 102-151 2-43 (44)
268 KOG2041 WD40 repeat protein [G 97.3 0.048 1E-06 48.8 17.9 63 102-169 693-760 (1189)
269 KOG0985 Vesicle coat protein c 97.3 0.15 3.2E-06 48.0 26.5 90 232-330 1223-1329(1666)
270 PF13431 TPR_17: Tetratricopep 97.3 0.00028 6.1E-09 36.1 2.7 32 124-163 2-33 (34)
271 PF05843 Suf: Suppressor of fo 97.2 0.0041 8.9E-08 50.8 10.2 135 189-345 3-138 (280)
272 PF06552 TOM20_plant: Plant sp 97.2 0.013 2.7E-07 43.0 11.2 79 225-304 21-106 (186)
273 PF13181 TPR_8: Tetratricopept 97.2 0.00045 9.8E-09 35.5 3.0 31 357-387 2-32 (34)
274 KOG3783 Uncharacterized conser 97.2 0.12 2.7E-06 44.8 23.0 258 21-301 235-521 (546)
275 PF13431 TPR_17: Tetratricopep 97.2 0.00041 8.9E-09 35.5 2.6 32 82-121 2-33 (34)
276 KOG4507 Uncharacterized conser 97.1 0.035 7.5E-07 48.5 14.6 95 278-388 614-708 (886)
277 PF13181 TPR_8: Tetratricopept 97.1 0.0017 3.6E-08 33.3 4.4 31 17-47 1-31 (34)
278 KOG0985 Vesicle coat protein c 97.1 0.27 5.9E-06 46.4 23.2 187 102-343 1105-1308(1666)
279 PF06552 TOM20_plant: Plant sp 97.1 0.0077 1.7E-07 44.1 9.0 78 97-175 21-105 (186)
280 KOG1463 26S proteasome regulat 97.0 0.15 3.3E-06 41.5 27.8 283 18-326 49-334 (411)
281 KOG1550 Extracellular protein 96.7 0.44 9.6E-06 43.4 24.6 263 18-342 245-537 (552)
282 KOG2053 Mitochondrial inherita 96.7 0.5 1.1E-05 43.9 30.3 231 28-299 20-254 (932)
283 PF10579 Rapsyn_N: Rapsyn N-te 96.6 0.07 1.5E-06 33.0 9.8 70 19-93 8-77 (80)
284 KOG1538 Uncharacterized conser 96.6 0.48 1E-05 42.4 20.2 149 106-295 637-797 (1081)
285 PF10516 SHNi-TPR: SHNi-TPR; 96.6 0.0074 1.6E-07 31.6 4.3 35 18-52 2-36 (38)
286 COG3118 Thioredoxin domain-con 96.5 0.31 6.8E-06 39.1 14.9 152 147-330 138-289 (304)
287 PF13174 TPR_6: Tetratricopept 96.4 0.0027 5.8E-08 32.2 2.1 31 357-387 1-31 (33)
288 PF10579 Rapsyn_N: Rapsyn N-te 96.4 0.11 2.4E-06 32.2 9.5 66 149-221 12-77 (80)
289 PRK14707 hypothetical protein; 96.4 1.5 3.3E-05 45.3 21.8 297 22-329 836-1141(2710)
290 KOG1538 Uncharacterized conser 96.3 0.76 1.6E-05 41.2 17.2 115 108-255 710-830 (1081)
291 PF10516 SHNi-TPR: SHNi-TPR; 96.3 0.019 4.2E-07 30.0 4.8 36 272-307 2-37 (38)
292 PF13174 TPR_6: Tetratricopept 96.2 0.008 1.7E-07 30.4 3.2 30 18-47 1-30 (33)
293 KOG3783 Uncharacterized conser 96.2 0.78 1.7E-05 40.2 24.1 252 107-386 237-521 (546)
294 PF04910 Tcf25: Transcriptiona 96.1 0.62 1.3E-05 39.7 15.2 154 11-173 34-223 (360)
295 COG3118 Thioredoxin domain-con 96.1 0.6 1.3E-05 37.6 16.3 127 105-257 138-264 (304)
296 PF08424 NRDE-2: NRDE-2, neces 96.0 0.76 1.6E-05 38.6 18.9 149 224-386 14-184 (321)
297 PF11207 DUF2989: Protein of u 96.0 0.46 1E-05 36.0 13.3 99 258-376 100-198 (203)
298 KOG0376 Serine-threonine phosp 96.0 0.025 5.5E-07 48.1 6.7 93 64-172 9-101 (476)
299 PF00244 14-3-3: 14-3-3 protei 96.0 0.62 1.3E-05 37.0 17.2 182 191-387 5-200 (236)
300 KOG4322 Anaphase-promoting com 95.9 0.88 1.9E-05 38.6 22.3 195 96-299 268-470 (482)
301 PF11817 Foie-gras_1: Foie gra 95.8 0.78 1.7E-05 36.8 21.8 91 158-254 153-243 (247)
302 PF04781 DUF627: Protein of un 95.8 0.21 4.5E-06 33.5 8.9 102 65-172 2-107 (111)
303 PF09613 HrpB1_HrpK: Bacterial 95.7 0.45 9.8E-06 34.6 10.9 87 186-288 9-95 (160)
304 KOG0376 Serine-threonine phosp 95.6 0.024 5.3E-07 48.2 5.2 95 20-130 7-101 (476)
305 PRK14707 hypothetical protein; 95.6 3.4 7.4E-05 43.0 23.0 299 64-377 836-1146(2710)
306 KOG1308 Hsp70-interacting prot 95.6 0.0065 1.4E-07 49.1 1.6 91 66-172 121-211 (377)
307 PF04910 Tcf25: Transcriptiona 95.4 1.4 3.1E-05 37.5 19.6 154 139-301 36-223 (360)
308 KOG0687 26S proteasome regulat 95.3 1.3 2.9E-05 36.2 13.8 129 163-302 84-212 (393)
309 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.021 4.6E-07 32.6 2.5 37 357-393 2-38 (53)
310 COG0790 FOG: TPR repeat, SEL1 95.1 1.6 3.4E-05 36.2 20.6 166 28-243 52-236 (292)
311 PF09613 HrpB1_HrpK: Bacterial 95.0 0.81 1.7E-05 33.3 10.5 89 56-160 7-95 (160)
312 KOG1308 Hsp70-interacting prot 94.9 0.017 3.7E-07 46.8 2.2 94 21-130 118-211 (377)
313 KOG4507 Uncharacterized conser 94.9 0.1 2.2E-06 45.8 6.7 96 20-130 610-705 (886)
314 COG5187 RPN7 26S proteasome re 94.9 1.6 3.6E-05 35.0 14.1 135 157-302 89-223 (412)
315 smart00028 TPR Tetratricopepti 94.8 0.048 1E-06 26.9 3.2 29 18-46 2-30 (34)
316 KOG4322 Anaphase-promoting com 94.7 2.4 5.2E-05 36.2 24.0 196 138-342 268-470 (482)
317 smart00028 TPR Tetratricopepti 94.7 0.018 3.9E-07 28.6 1.3 31 357-387 2-32 (34)
318 PF11207 DUF2989: Protein of u 94.5 1.6 3.4E-05 33.2 14.7 77 117-207 122-198 (203)
319 PF07721 TPR_4: Tetratricopept 94.5 0.034 7.4E-07 26.3 1.8 25 357-381 2-26 (26)
320 PF11817 Foie-gras_1: Foie gra 94.5 2.1 4.5E-05 34.4 22.9 186 21-212 14-243 (247)
321 PF07721 TPR_4: Tetratricopept 94.5 0.067 1.5E-06 25.3 2.8 24 272-295 2-25 (26)
322 PF14853 Fis1_TPR_C: Fis1 C-te 94.5 0.49 1.1E-05 27.1 7.0 30 272-301 2-31 (53)
323 KOG3364 Membrane protein invol 94.4 0.16 3.4E-06 35.3 5.3 75 313-392 32-107 (149)
324 COG4649 Uncharacterized protei 94.3 1.5 3.3E-05 32.2 13.7 123 242-384 71-195 (221)
325 PF12739 TRAPPC-Trs85: ER-Golg 93.9 4.1 8.8E-05 35.8 18.2 178 189-388 210-402 (414)
326 PF08424 NRDE-2: NRDE-2, neces 93.7 3.7 8E-05 34.6 19.6 148 96-258 14-183 (321)
327 TIGR02561 HrpB1_HrpK type III 93.7 1.9 4E-05 31.0 9.6 85 188-288 11-95 (153)
328 KOG0686 COP9 signalosome, subu 93.6 0.78 1.7E-05 38.6 8.9 107 15-128 148-256 (466)
329 KOG4814 Uncharacterized conser 93.6 5.6 0.00012 36.1 32.9 106 17-132 354-459 (872)
330 PF12739 TRAPPC-Trs85: ER-Golg 93.5 4.9 0.00011 35.3 18.3 179 144-346 209-402 (414)
331 PF10952 DUF2753: Protein of u 93.5 1.7 3.7E-05 29.8 10.2 73 20-92 4-83 (140)
332 KOG0686 COP9 signalosome, subu 93.3 3.1 6.6E-05 35.3 11.8 106 141-255 148-255 (466)
333 KOG1497 COP9 signalosome, subu 93.3 3.9 8.4E-05 33.5 15.3 111 269-383 101-211 (399)
334 KOG0508 Ankyrin repeat protein 93.2 0.21 4.6E-06 42.6 5.2 137 187-326 245-392 (615)
335 PF10952 DUF2753: Protein of u 93.2 1.9 4.1E-05 29.6 9.4 74 274-348 4-84 (140)
336 KOG1497 COP9 signalosome, subu 93.1 4.2 9E-05 33.3 16.0 108 227-337 101-208 (399)
337 COG4649 Uncharacterized protei 93.0 2.8 6.1E-05 31.0 16.7 149 67-257 47-195 (221)
338 PF14561 TPR_20: Tetratricopep 92.9 1.7 3.7E-05 28.3 9.5 72 267-366 18-89 (90)
339 COG0790 FOG: TPR repeat, SEL1 92.9 4.8 0.0001 33.4 22.2 167 111-327 51-236 (292)
340 PF15015 NYD-SP12_N: Spermatog 92.9 3.6 7.7E-05 35.2 11.6 102 22-131 181-292 (569)
341 KOG2114 Vacuolar assembly/sort 92.6 8.2 0.00018 36.3 14.3 49 39-88 349-397 (933)
342 PRK10941 hypothetical protein; 92.5 3.5 7.5E-05 33.5 11.1 79 228-319 180-258 (269)
343 PRK13184 pknD serine/threonine 92.5 3.9 8.5E-05 39.6 13.0 103 206-315 487-591 (932)
344 PF04190 DUF410: Protein of un 92.5 4.9 0.00011 32.6 25.9 207 150-371 17-243 (260)
345 KOG1914 mRNA cleavage and poly 92.4 7.5 0.00016 34.6 21.8 212 104-345 289-503 (656)
346 PF10255 Paf67: RNA polymerase 92.4 0.31 6.8E-06 41.6 5.4 73 61-133 124-196 (404)
347 COG3629 DnrI DNA-binding trans 92.3 5.2 0.00011 32.5 12.8 77 228-312 152-228 (280)
348 PF14561 TPR_20: Tetratricopep 92.2 2.2 4.7E-05 27.8 9.5 33 225-257 18-50 (90)
349 KOG0508 Ankyrin repeat protein 92.0 0.13 2.7E-06 43.8 2.6 138 143-283 245-391 (615)
350 PF04781 DUF627: Protein of un 91.9 2.8 6E-05 28.4 10.4 101 277-384 2-106 (111)
351 KOG1914 mRNA cleavage and poly 91.8 9 0.00019 34.1 28.3 68 11-87 14-81 (656)
352 PF15015 NYD-SP12_N: Spermatog 91.8 5 0.00011 34.3 11.3 107 187-301 176-292 (569)
353 TIGR02561 HrpB1_HrpK type III 91.5 3.9 8.5E-05 29.4 9.9 87 58-160 9-95 (153)
354 PF00244 14-3-3: 14-3-3 protei 91.4 6.2 0.00014 31.4 24.8 186 62-262 4-202 (236)
355 cd02682 MIT_AAA_Arch MIT: doma 91.3 2.3 5.1E-05 26.4 7.4 43 143-185 6-48 (75)
356 PRK10941 hypothetical protein; 91.1 7 0.00015 31.8 11.4 76 57-145 179-254 (269)
357 PF08626 TRAPPC9-Trs120: Trans 90.8 21 0.00045 36.5 19.3 156 142-303 241-477 (1185)
358 PF10255 Paf67: RNA polymerase 90.8 0.85 1.8E-05 39.1 6.3 73 190-262 125-197 (404)
359 KOG0890 Protein kinase of the 90.6 27 0.0006 37.4 31.1 110 267-387 1666-1786(2382)
360 PF04053 Coatomer_WDAD: Coatom 90.3 9.5 0.00021 33.8 12.3 83 100-213 346-428 (443)
361 TIGR03504 FimV_Cterm FimV C-te 90.3 1.8 3.8E-05 23.6 5.1 25 147-171 3-27 (44)
362 COG3629 DnrI DNA-binding trans 90.2 9 0.00019 31.2 12.5 76 57-140 151-226 (280)
363 KOG3824 Huntingtin interacting 90.1 1.3 2.8E-05 35.9 6.3 60 63-130 120-179 (472)
364 TIGR03504 FimV_Cterm FimV C-te 90.0 1.7 3.7E-05 23.7 4.9 25 21-45 3-27 (44)
365 KOG4814 Uncharacterized conser 89.8 16 0.00034 33.5 29.8 106 101-218 354-459 (872)
366 COG5187 RPN7 26S proteasome re 89.7 9.7 0.00021 30.9 14.2 131 35-174 93-223 (412)
367 KOG3824 Huntingtin interacting 89.7 0.47 1E-05 38.3 3.6 65 319-392 122-186 (472)
368 PF12854 PPR_1: PPR repeat 89.6 0.93 2E-05 23.0 3.6 26 229-254 7-32 (34)
369 KOG4563 Cell cycle-regulated h 89.4 2.1 4.7E-05 35.6 7.1 65 16-80 40-104 (400)
370 PF07079 DUF1347: Protein of u 89.3 14 0.0003 32.2 31.2 71 16-89 78-158 (549)
371 KOG3364 Membrane protein invol 89.2 6.1 0.00013 27.9 9.7 67 228-301 31-101 (149)
372 KOG0687 26S proteasome regulat 89.0 12 0.00026 31.0 15.6 131 77-218 82-212 (393)
373 PF12854 PPR_1: PPR repeat 88.9 1.4 3.1E-05 22.3 4.0 27 143-169 7-33 (34)
374 PF13041 PPR_2: PPR repeat fam 88.9 2.7 5.9E-05 23.5 6.2 28 230-257 4-31 (50)
375 COG3947 Response regulator con 88.9 8.3 0.00018 31.3 9.7 73 60-140 280-352 (361)
376 PF04053 Coatomer_WDAD: Coatom 88.7 17 0.00036 32.3 13.8 100 146-295 298-397 (443)
377 COG3947 Response regulator con 87.9 11 0.00023 30.8 9.7 73 231-311 281-353 (361)
378 KOG2561 Adaptor protein NUB1, 87.8 17 0.00038 31.4 11.7 147 231-380 165-339 (568)
379 KOG4014 Uncharacterized conser 87.5 10 0.00022 28.4 12.6 133 57-221 66-238 (248)
380 COG4976 Predicted methyltransf 87.4 1.4 3.1E-05 34.1 4.7 55 68-130 4-58 (287)
381 KOG1258 mRNA processing protei 87.0 23 0.00051 32.0 33.0 177 187-390 297-475 (577)
382 KOG2561 Adaptor protein NUB1, 86.8 20 0.00043 31.1 12.5 116 19-134 165-300 (568)
383 KOG2114 Vacuolar assembly/sort 86.8 29 0.00063 33.0 18.7 50 165-217 349-398 (933)
384 PF13041 PPR_2: PPR repeat fam 86.6 3.7 8.1E-05 22.9 5.3 28 272-299 4-31 (50)
385 cd02679 MIT_spastin MIT: domai 86.6 3.6 7.8E-05 25.9 5.5 59 317-387 12-70 (79)
386 KOG4563 Cell cycle-regulated h 86.4 3.2 6.9E-05 34.6 6.4 67 58-124 40-106 (400)
387 KOG0890 Protein kinase of the 86.4 53 0.0011 35.6 29.0 111 225-345 1666-1786(2382)
388 PF01535 PPR: PPR repeat; Int 86.2 1.7 3.7E-05 21.0 3.3 27 145-171 2-28 (31)
389 PHA02537 M terminase endonucle 85.9 2.6 5.6E-05 33.1 5.6 108 279-389 91-211 (230)
390 COG4976 Predicted methyltransf 85.7 2 4.4E-05 33.3 4.8 55 26-88 4-58 (287)
391 PF07720 TPR_3: Tetratricopept 85.5 1.3 2.7E-05 23.0 2.6 30 357-386 2-33 (36)
392 PF09670 Cas_Cas02710: CRISPR- 85.1 25 0.00053 30.6 16.5 65 18-88 132-198 (379)
393 PRK09169 hypothetical protein; 83.7 70 0.0015 34.7 20.0 16 354-369 794-809 (2316)
394 PRK09169 hypothetical protein; 83.2 74 0.0016 34.6 21.3 27 362-388 753-779 (2316)
395 TIGR00756 PPR pentatricopeptid 83.0 3.8 8.2E-05 20.3 4.0 27 145-171 2-28 (35)
396 KOG2908 26S proteasome regulat 82.8 27 0.00058 29.2 16.1 94 152-250 84-178 (380)
397 PF07163 Pex26: Pex26 protein; 82.2 25 0.00055 28.5 14.3 138 16-167 34-182 (309)
398 KOG1310 WD40 repeat protein [G 82.0 12 0.00027 33.2 8.4 100 14-129 371-473 (758)
399 cd02683 MIT_1 MIT: domain cont 81.9 10 0.00022 23.8 7.7 31 146-176 9-39 (77)
400 PF04190 DUF410: Protein of un 81.0 28 0.00062 28.3 24.6 219 12-242 5-241 (260)
401 KOG0276 Vesicle coat complex C 80.5 18 0.00039 32.9 8.9 50 69-131 647-696 (794)
402 PF09670 Cas_Cas02710: CRISPR- 80.3 39 0.00084 29.4 17.3 139 145-303 133-273 (379)
403 cd02682 MIT_AAA_Arch MIT: doma 79.4 13 0.00027 23.3 6.3 32 190-221 9-40 (75)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 78.9 20 0.00043 25.2 10.8 86 73-170 40-126 (126)
405 PF13812 PPR_3: Pentatricopept 77.6 6.9 0.00015 19.3 4.3 27 145-171 3-29 (34)
406 KOG2422 Uncharacterized conser 77.3 57 0.0012 29.7 17.0 177 114-301 251-449 (665)
407 PF04212 MIT: MIT (microtubule 77.1 14 0.0003 22.5 7.4 31 146-176 8-38 (69)
408 cd02681 MIT_calpain7_1 MIT: do 75.5 17 0.00037 22.8 7.9 29 191-219 10-38 (76)
409 COG3914 Spy Predicted O-linked 74.8 26 0.00057 31.7 8.4 113 264-392 61-178 (620)
410 KOG0276 Vesicle coat complex C 74.2 16 0.00036 33.1 7.0 50 196-258 646-695 (794)
411 smart00745 MIT Microtubule Int 73.9 19 0.00041 22.5 8.1 29 148-176 13-41 (77)
412 COG2178 Predicted RNA-binding 73.8 37 0.00081 25.9 12.7 114 191-310 33-160 (204)
413 PF10373 EST1_DNA_bind: Est1 D 73.6 49 0.0011 27.1 12.9 62 78-155 1-62 (278)
414 cd02679 MIT_spastin MIT: domai 73.4 20 0.00044 22.6 7.1 32 191-222 12-43 (79)
415 KOG1310 WD40 repeat protein [G 73.0 32 0.00069 30.9 8.3 90 66-171 381-473 (758)
416 cd02681 MIT_calpain7_1 MIT: do 72.9 20 0.00044 22.4 7.4 30 316-346 9-38 (76)
417 smart00101 14_3_3 14-3-3 homol 72.6 48 0.001 26.6 24.9 183 105-302 5-202 (244)
418 PF04097 Nic96: Nup93/Nic96; 72.4 87 0.0019 29.5 20.3 18 25-42 266-283 (613)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 71.3 33 0.00072 24.1 12.2 86 201-298 40-126 (126)
420 PF10373 EST1_DNA_bind: Est1 D 70.8 57 0.0012 26.7 11.8 62 120-199 1-62 (278)
421 PF07163 Pex26: Pex26 protein; 70.6 58 0.0013 26.6 13.9 137 145-295 37-182 (309)
422 KOG4014 Uncharacterized conser 70.5 44 0.00096 25.3 13.2 149 123-305 50-238 (248)
423 PRK15180 Vi polysaccharide bio 70.5 13 0.00027 32.7 5.5 52 240-299 300-351 (831)
424 PF08626 TRAPPC9-Trs120: Trans 70.5 1.4E+02 0.003 31.0 23.1 155 101-259 242-475 (1185)
425 PF10858 DUF2659: Protein of u 70.4 41 0.00088 24.8 13.4 102 234-342 98-199 (220)
426 PF09311 Rab5-bind: Rabaptin-l 69.6 19 0.00041 27.3 5.8 48 265-312 134-181 (181)
427 KOG4521 Nuclear pore complex, 68.1 1.4E+02 0.003 30.1 18.9 185 102-301 921-1133(1480)
428 KOG3807 Predicted membrane pro 68.0 72 0.0016 26.8 15.7 29 187-215 275-303 (556)
429 PF04212 MIT: MIT (microtubule 67.4 25 0.00055 21.3 7.4 34 17-50 5-38 (69)
430 KOG2422 Uncharacterized conser 67.4 1E+02 0.0022 28.3 15.4 175 30-217 251-449 (665)
431 KOG1258 mRNA processing protei 67.2 1E+02 0.0022 28.2 31.1 318 31-387 55-397 (577)
432 smart00101 14_3_3 14-3-3 homol 67.2 65 0.0014 25.9 23.7 182 147-344 5-201 (244)
433 KOG2758 Translation initiation 67.2 74 0.0016 26.6 15.9 74 97-175 125-199 (432)
434 PF05053 Menin: Menin; InterP 66.7 1E+02 0.0022 28.1 14.0 76 100-178 276-353 (618)
435 PF07079 DUF1347: Protein of u 65.9 97 0.0021 27.5 33.4 140 19-174 8-159 (549)
436 cd02683 MIT_1 MIT: domain cont 65.8 31 0.00067 21.7 7.1 43 316-359 9-52 (77)
437 PF10938 YfdX: YfdX protein; 65.5 48 0.001 24.4 7.0 109 191-299 6-145 (155)
438 KOG3024 Uncharacterized conser 65.3 76 0.0016 26.0 13.6 133 31-169 20-153 (312)
439 PRK15180 Vi polysaccharide bio 65.3 70 0.0015 28.4 8.7 121 154-300 300-420 (831)
440 PF10938 YfdX: YfdX protein; 64.8 54 0.0012 24.2 7.2 111 147-257 6-145 (155)
441 KOG2581 26S proteasome regulat 64.2 98 0.0021 26.9 20.8 142 153-301 136-277 (493)
442 cd02678 MIT_VPS4 MIT: domain c 63.6 33 0.00072 21.3 7.7 29 148-176 11-39 (75)
443 PRK13184 pknD serine/threonine 62.4 1.7E+02 0.0037 29.2 30.2 104 21-131 479-582 (932)
444 KOG4521 Nuclear pore complex, 62.0 1.9E+02 0.004 29.4 20.2 189 145-346 922-1135(1480)
445 PHA02537 M terminase endonucle 61.4 81 0.0018 25.1 9.4 105 152-258 92-207 (230)
446 PF09311 Rab5-bind: Rabaptin-l 60.5 35 0.00076 25.9 5.8 48 307-355 134-181 (181)
447 smart00671 SEL1 Sel1-like repe 60.2 21 0.00045 17.8 3.5 28 18-45 2-33 (36)
448 KOG2581 26S proteasome regulat 59.7 1.2E+02 0.0026 26.5 21.2 138 112-258 137-276 (493)
449 cd02680 MIT_calpain7_2 MIT: do 59.2 36 0.00077 21.3 4.6 23 153-175 16-38 (75)
450 cd02656 MIT MIT: domain contai 58.8 41 0.0009 20.9 8.0 29 148-176 11-39 (75)
451 cd02678 MIT_VPS4 MIT: domain c 57.4 45 0.00097 20.8 7.8 34 17-50 6-39 (75)
452 PF14689 SPOB_a: Sensor_kinase 56.5 36 0.00078 20.3 4.2 35 359-393 26-60 (62)
453 PF05053 Menin: Menin; InterP 56.2 1.6E+02 0.0036 27.0 13.0 70 187-259 277-348 (618)
454 PF09205 DUF1955: Domain of un 55.1 24 0.00053 25.0 3.7 44 2-45 105-148 (161)
455 KOG3807 Predicted membrane pro 54.7 1.3E+02 0.0028 25.4 16.1 30 228-257 274-303 (556)
456 KOG2758 Translation initiation 54.3 1.3E+02 0.0028 25.3 15.3 75 12-90 124-198 (432)
457 cd02677 MIT_SNX15 MIT: domain 52.9 55 0.0012 20.5 7.6 26 151-176 14-39 (75)
458 KOG2396 HAT (Half-A-TPR) repea 52.7 1.8E+02 0.0039 26.3 10.7 76 61-149 107-183 (568)
459 KOG2582 COP9 signalosome, subu 52.3 65 0.0014 27.5 6.3 111 58-172 101-212 (422)
460 cd02684 MIT_2 MIT: domain cont 51.7 58 0.0013 20.4 7.8 28 149-176 12-39 (75)
461 smart00777 Mad3_BUB1_I Mad3/BU 50.6 86 0.0019 22.1 8.0 80 77-168 44-124 (125)
462 PF08238 Sel1: Sel1 repeat; I 49.6 35 0.00077 17.3 4.2 28 18-45 2-36 (39)
463 KOG2709 Uncharacterized conser 49.5 53 0.0012 28.4 5.5 31 315-346 24-54 (560)
464 smart00745 MIT Microtubule Int 48.9 64 0.0014 20.1 7.8 31 318-349 13-43 (77)
465 PF03635 Vps35: Vacuolar prote 48.5 2.7E+02 0.0059 27.2 16.8 117 57-176 590-718 (762)
466 COG2912 Uncharacterized conser 48.4 1.5E+02 0.0033 24.2 9.0 73 229-314 181-253 (269)
467 cd02680 MIT_calpain7_2 MIT: do 47.1 70 0.0015 20.0 6.2 32 18-49 7-38 (75)
468 KOG2063 Vacuolar assembly/sort 44.4 3.3E+02 0.0071 27.0 12.6 186 19-215 506-712 (877)
469 KOG2582 COP9 signalosome, subu 43.2 1.2E+02 0.0026 26.0 6.5 108 144-257 103-211 (422)
470 COG5107 RNA14 Pre-mRNA 3'-end 42.6 2.5E+02 0.0054 25.1 21.4 86 239-339 442-527 (660)
471 PF12753 Nro1: Nuclear pore co 42.4 1.2E+02 0.0026 26.4 6.5 54 248-304 330-388 (404)
472 cd02684 MIT_2 MIT: domain cont 41.7 87 0.0019 19.6 7.8 39 320-359 13-52 (75)
473 TIGR02710 CRISPR-associated pr 41.5 2.4E+02 0.0052 24.6 14.0 69 12-83 123-195 (380)
474 COG5191 Uncharacterized conser 41.3 1.7E+02 0.0036 24.6 6.9 80 62-154 110-190 (435)
475 PF10858 DUF2659: Protein of u 40.8 1.5E+02 0.0033 22.1 16.0 129 115-257 71-199 (220)
476 KOG2063 Vacuolar assembly/sort 40.4 3.8E+02 0.0083 26.6 12.3 95 197-299 601-712 (877)
477 cd02656 MIT MIT: domain contai 40.2 90 0.002 19.3 7.8 31 318-349 11-41 (75)
478 PF12753 Nro1: Nuclear pore co 39.7 1.6E+02 0.0035 25.6 6.9 55 36-92 330-388 (404)
479 PF12309 KBP_C: KIF-1 binding 38.8 2.7E+02 0.0058 24.3 22.4 149 243-391 138-344 (371)
480 KOG2709 Uncharacterized conser 38.5 2E+02 0.0043 25.2 7.1 31 189-219 24-54 (560)
481 TIGR02710 CRISPR-associated pr 38.3 2.7E+02 0.0059 24.3 14.6 59 148-211 135-195 (380)
482 KOG2396 HAT (Half-A-TPR) repea 38.1 3.1E+02 0.0068 24.9 11.5 75 231-318 107-182 (568)
483 TIGR00985 3a0801s04tom mitocho 37.7 1.6E+02 0.0034 21.6 5.7 34 359-392 93-127 (148)
484 KOG4279 Serine/threonine prote 37.7 3.7E+02 0.008 26.0 9.1 128 142-293 200-343 (1226)
485 PF09205 DUF1955: Domain of un 37.1 1.6E+02 0.0034 21.2 7.3 52 240-299 97-148 (161)
486 PF02184 HAT: HAT (Half-A-TPR) 37.1 10 0.00022 19.0 -0.2 23 371-393 2-24 (32)
487 PF10366 Vps39_1: Vacuolar sor 36.6 56 0.0012 22.3 3.3 27 19-45 41-67 (108)
488 KOG0128 RNA-binding protein SA 36.5 4.2E+02 0.009 25.9 30.4 147 17-171 113-259 (881)
489 PF02064 MAS20: MAS20 protein 36.3 40 0.00086 23.5 2.5 33 359-391 66-98 (121)
490 KOG0546 HSP90 co-chaperone CPR 35.5 1.4E+02 0.0031 25.5 5.8 103 62-172 225-338 (372)
491 KOG2908 26S proteasome regulat 35.0 2.9E+02 0.0063 23.6 20.8 99 196-297 84-183 (380)
492 COG4455 ImpE Protein of avirul 34.7 2.3E+02 0.0051 22.5 8.1 55 238-300 10-64 (273)
493 COG4259 Uncharacterized protei 34.4 1.4E+02 0.0031 19.9 4.6 34 357-390 73-106 (121)
494 cd02677 MIT_SNX15 MIT: domain 34.3 1.2E+02 0.0026 19.0 8.2 35 16-50 5-39 (75)
495 COG5600 Transcription-associat 33.6 3.2E+02 0.007 23.7 9.1 67 63-133 181-252 (413)
496 PF11846 DUF3366: Domain of un 33.4 2E+02 0.0042 22.1 6.3 31 271-301 144-174 (193)
497 PF03745 DUF309: Domain of unk 33.2 1.1E+02 0.0024 18.3 4.1 55 149-209 5-61 (62)
498 KOG4279 Serine/threonine prote 33.1 2.9E+02 0.0062 26.6 7.8 122 99-244 199-335 (1226)
499 KOG3677 RNA polymerase I-assoc 32.0 3.2E+02 0.0069 24.2 7.3 67 232-303 238-304 (525)
500 KOG3677 RNA polymerase I-assoc 31.6 1E+02 0.0022 26.9 4.6 67 62-133 238-304 (525)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-36 Score=255.24 Aligned_cols=313 Identities=28% Similarity=0.385 Sum_probs=295.2
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114 5 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 84 (395)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (395)
..+.++..+|....+...++..|..+|+|++|+..+++++++..+..+..++.....+..+|.+|..++++.+|+..|++
T Consensus 187 ~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~ 266 (508)
T KOG1840|consen 187 QAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE 266 (508)
T ss_pred HHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114 85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 164 (395)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 164 (395)
|+.+.+...|+++|.++.++.+||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++...+++++|..
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc
Q 016114 165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244 (395)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 244 (395)
++++++++.... ++++++.+..++.++|.+|..+|++++|.+++++|+.+.++..+..++.....++++|..|.+.++
T Consensus 347 l~q~al~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 347 LLQKALKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 999999999865 788888999999999999999999999999999999999999888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 320 (395)
+.+|...|.++..+. +..|+++|++...+.+|+.+|..+|+++.|+++.+.++...+..++..++.....-..++
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 999999999999999 889999999999999999999999999999999999999999988887776654443333
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=2.4e-36 Score=253.69 Aligned_cols=328 Identities=23% Similarity=0.286 Sum_probs=303.5
Q ss_pred HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc
Q 016114 35 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 114 (395)
Q Consensus 35 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (395)
...........+..+..+..+|....+...++..|...|+|++|+..+++++++..+..|.+++.+......+|.+|..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~ 254 (508)
T KOG1840|consen 175 SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL 254 (508)
T ss_pred ccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh
Confidence 45555555556666666778888899999999999999999999999999999999988889999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHH
Q 016114 115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 194 (395)
Q Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la 194 (395)
+++.+|+.+|++|+.+.+..+|+++|.++.++.+||.+|...|++++|..++++|+++.++. .+..++.+...+.+++
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVAAQLSELA 332 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 6778899999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH
Q 016114 195 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 274 (395)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 274 (395)
.++..++++++|..++++++++.....+++++.....+.+||.+|..+|++++|.+++++++.+.++..+..++.+...+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH
Q 016114 275 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 354 (395)
Q Consensus 275 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 354 (395)
..+|..|.+.+++.+|...|.++..+. ..+|+++|++...+.+|+.+|..+|+++ +|+++.++++...+...+..+|.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e-~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYE-AAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999 8899999999999999999999999999 99999999999999988888877
Q ss_pred HHHHHHHHHHHH
Q 016114 355 VMLTLKKVVSYL 366 (395)
Q Consensus 355 ~~~~~~~la~~~ 366 (395)
....-..++...
T Consensus 491 ~~~~~~~~~~~~ 502 (508)
T KOG1840|consen 491 VEDEKLRLADLS 502 (508)
T ss_pred hhHHHHhhhHHH
Confidence 665554444443
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-39 Score=266.39 Aligned_cols=322 Identities=17% Similarity=0.216 Sum_probs=259.4
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC--------------------------cChHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--------------------------KTSILLVTSLLGM 65 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~~~l 65 (395)
..|...++|.++|.++...|+.+.|...|.+++++.+.... ...|..+.+|.+|
T Consensus 145 l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnL 224 (966)
T KOG4626|consen 145 LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNL 224 (966)
T ss_pred cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhc
Confidence 34555666666666666666666666666666554211000 0123444566677
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 145 (395)
|.++...|+...|+..|++|+.+ +|....+|.+||.+|...+.|++|+..|.+|+.+ .|..+.+
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a 288 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVA 288 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhh
Confidence 77777777777777777777765 6788888899999999999999999999888875 5777788
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 225 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (395)
+.++|.+|..+|..+-|+..|++++++ .| ....+++|+|..+-..|+..+|+.+|++++.+.
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~-------~P---~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-------- 350 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALEL-------QP---NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-------- 350 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhc-------CC---CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------
Confidence 889999999999999999999998874 22 235578999999999999999999999999863
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 305 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 305 (395)
|..+.++++||.+|.++|.+++|..+|.++++. .|..+.+..+||.+|..+|++++|+.+|++++++.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~---- 418 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK---- 418 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC----
Confidence 455678899999999999999999999999984 57788889999999999999999999999999865
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114 306 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 385 (395)
|..+.++.++|..|..+|+.. .|+..|.+|+.+ +|..++++.+||.+|...|+..+|+..|+.++.+
T Consensus 419 ----P~fAda~~NmGnt~ke~g~v~-~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 419 ----PTFADALSNMGNTYKEMGDVS-AAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred ----chHHHHHHhcchHHHHhhhHH-HHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 778889999999999999999 999999999974 6888999999999999999999999999999999
Q ss_pred HHHHHhh
Q 016114 386 RMKYKQK 392 (395)
Q Consensus 386 ~~~~~~~ 392 (395)
.+++.+.
T Consensus 486 kPDfpdA 492 (966)
T KOG4626|consen 486 KPDFPDA 492 (966)
T ss_pred CCCCchh
Confidence 8877653
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-38 Score=257.94 Aligned_cols=323 Identities=18% Similarity=0.190 Sum_probs=263.6
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
...|..+++|.++|+++...|++++|+.+|+.++++ .|..++++.++|.++...|+.+.|...|.+++++..
T Consensus 110 r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--------~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 356888999999999999999999999999999986 356777888888888888888888877777776521
Q ss_pred Hhc-------------C-------------CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 016114 91 LNR-------------G-------------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 144 (395)
Q Consensus 91 ~~~-------------~-------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 144 (395)
... | ...|..+.+|.+||.++..+|+...|+..|++|+.+ +|....
T Consensus 182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~d 253 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLD 253 (966)
T ss_pred chhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchH
Confidence 000 0 013445556666777777777777777777777665 677778
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (395)
+|.+||.+|...+.+++|+..|.+|+.+. | ..+.++.|+|.+|..+|..+-|+..|++++++
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-------p---n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-------- 315 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLR-------P---NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-------- 315 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcC-------C---cchhhccceEEEEeccccHHHHHHHHHHHHhc--------
Confidence 88889999999999999999888888742 2 23566788899999999999999999998875
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 304 (395)
.|....++++||..+...|+..+|+.+|.+++.+ .|..+.++.+||.+|.++|.+++|..+|+++++..
T Consensus 316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--- 384 (966)
T KOG4626|consen 316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--- 384 (966)
T ss_pred CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---
Confidence 4667788999999999999999999999999884 45667788999999999999999999999998865
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114 305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 384 (395)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 384 (395)
|+.+.+..+||.+|.++|+.+ +|+.+|++++.+ .|..++++.++|.+|..+|+.+.|+..|.+|+.
T Consensus 385 -----p~~aaa~nNLa~i~kqqgnl~-~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 385 -----PEFAAAHNNLASIYKQQGNLD-DAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred -----hhhhhhhhhHHHHHHhcccHH-HHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 777888999999999999999 999999999975 577889999999999999999999999999999
Q ss_pred HHHHHHhh
Q 016114 385 LRMKYKQK 392 (395)
Q Consensus 385 ~~~~~~~~ 392 (395)
+.+.+.+.
T Consensus 451 ~nPt~AeA 458 (966)
T KOG4626|consen 451 INPTFAEA 458 (966)
T ss_pred cCcHHHHH
Confidence 88877553
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-29 Score=229.06 Aligned_cols=322 Identities=16% Similarity=0.149 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH----------
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT---------- 87 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------- 87 (395)
..+.++|.+|...|++++|+..+.+++++ .|....++..+|.++...|++++|+..+..+..
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~ 232 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA 232 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 35677777777778888888877777765 244567788888888889998888765543321
Q ss_pred --------------------------------------------------------------------------------
Q 016114 88 -------------------------------------------------------------------------------- 87 (395)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (395)
T Consensus 233 ~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~ 312 (615)
T TIGR00990 233 QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEE 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred ---HHHHhcC--CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 016114 88 ---ILELNRG--TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA 162 (395)
Q Consensus 88 ---~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 162 (395)
.++.... ...|....++..+|.++..+|++++|+..+++++.+ +|....++..+|.++...|++++|
T Consensus 313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 1111110 113445566778888888899999999999998875 455667888899999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q 016114 163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 242 (395)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 242 (395)
+..++++++. .++. ..++..+|.++...|++++|+..|++++.+ .|.....+.++|.++...
T Consensus 385 ~~~~~~al~~-------~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 385 EEDFDKALKL-------NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHC
Confidence 9999999875 2333 346688999999999999999999999875 345566788999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 016114 243 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 322 (395)
Q Consensus 243 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 322 (395)
|++++|+..+++++.. .|....++..+|.++...|++++|+..|++++.+.... .+.+......+...+..
T Consensus 447 g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 447 GSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALAL 517 (615)
T ss_pred CCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHH
Confidence 9999999999999873 46667788999999999999999999999999875321 11112222222333344
Q ss_pred HHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114 323 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 323 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
+...|+++ +|..++++++.+ +|+...++..+|.++..+|++++|+.+|++++++.+..++
T Consensus 518 ~~~~~~~~-eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 518 FQWKQDFI-EAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHhhhHH-HHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 45578999 999999999875 2334557889999999999999999999999999886544
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=1.1e-28 Score=222.51 Aligned_cols=321 Identities=14% Similarity=0.132 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+..+..+|..++..|+|++|+..|++++.+. ++ ...+.++|.+|...|++++|+..+.+++++
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-----p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------- 189 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-----PD----PVYYSNRAACHNALGDWEKVVEDTTAALEL------- 189 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----Cc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence 45668899999999999999999999999863 22 236889999999999999999999999986
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH-----------------------------------------------
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL----------------------------------------------- 128 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------------------------- 128 (395)
.|....++..+|.+|..+|++++|+..+..+.
T Consensus 190 -~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 190 -DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 56778899999999999999999976554332
Q ss_pred ----------------------------------------------HHHHHHhC--CCChhHHHHHHHHHHHHHHCCCHH
Q 016114 129 ----------------------------------------------KIYTKVYG--ENDGRVGMAMCSLAHAKCANGNAE 160 (395)
Q Consensus 129 ----------------------------------------------~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~ 160 (395)
..+++... ...|....++..+|.++...|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 11111111 113455567788888999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114 161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240 (395)
Q Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 240 (395)
+|+..+++++++. |. ....+..+|.++...|++++|+..++++++. +|....++..+|.++.
T Consensus 349 eA~~~~~kal~l~-------P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 349 EALADLSKSIELD-------PR---VTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHcC-------CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence 9999999988742 22 2456688999999999999999999998875 2444567889999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320 (395)
Q Consensus 241 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 320 (395)
..|++++|+..|++++.+ .|.....+..+|.++...|++++|+..+++++... |....++..+|
T Consensus 411 ~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg 474 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYG 474 (615)
T ss_pred HcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHH
Confidence 999999999999999873 46667788899999999999999999999998753 33345688899
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
.++...|+++ +|+..|++++.+.... .+........+...+.++...|++++|+.++++++.+.++.
T Consensus 475 ~~~~~~g~~~-~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 475 ELLLDQNKFD-EAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred HHHHHccCHH-HHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 9999999999 9999999999875431 11112222233333444555799999999999998876543
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=8.5e-27 Score=209.63 Aligned_cols=313 Identities=13% Similarity=0.011 Sum_probs=252.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114 10 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 89 (395)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 89 (395)
....|....++..+|......|++++|+..+++++... |....++..+|.++...|++++|+..+++++.+
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l- 139 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA- 139 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34456667778889999999999999999999998862 334567888999999999999999999999986
Q ss_pred HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114 90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 169 (395)
.|....++..++.++...|++++|+..+.+++.. .++++ ..+..++ .+...|++++|+..++++
T Consensus 140 -------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----~P~~~---~a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 140 -------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----VPPRG---DMIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred -------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 4666778889999999999999999999977665 22233 2333443 478899999999999988
Q ss_pred HHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHH--
Q 016114 170 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-- 247 (395)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-- 247 (395)
+... ..+.. .....++.++...|++++|+..+++++.. +|....++.++|.++...|++++
T Consensus 204 l~~~------~~~~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 204 LPFF------ALERQ---ESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HhcC------CCcch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhH
Confidence 7642 11111 12245688899999999999999999874 34456788899999999999986
Q ss_pred --HHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114 248 --AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 325 (395)
Q Consensus 248 --A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (395)
|+..+++++.+ .|....++..+|.++...|++++|+..+++++... |++ ..++..+|.++..
T Consensus 267 ~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~~---~~a~~~La~~l~~ 330 (656)
T PRK15174 267 LQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PDL---PYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHH
Confidence 78899988873 46677889999999999999999999999998753 443 4467789999999
Q ss_pred cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 326 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 326 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
.|+++ +|+..|++++.. +|........+|.++...|++++|+..|++++++.++.
T Consensus 331 ~G~~~-eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 331 VGQYT-AASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCCHH-HHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 99999 999999998864 23334456667899999999999999999999987664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=3.3e-25 Score=211.88 Aligned_cols=311 Identities=18% Similarity=0.141 Sum_probs=160.3
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+|.....+..++..+...|++++|+..++++++.. |.....+..+|.++...|++++|+..|++++..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 630 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL---- 630 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34444556677777777788888877777766531 122345667777777777777777777777654
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.|....++..+|.++...|++++|...+++++.. .|....++..++.++...|++++|...++.+.+.
T Consensus 631 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 631 ----QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2344456667777777777777777777777654 2222334445555555555555555555544332
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh-------------------------CCCChh
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-------------------------GKEHPS 227 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------~~~~~~ 227 (395)
. +.. ...+..+|.++...|++++|+..|++++....... -...|.
T Consensus 699 ~-------~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 699 H-------PKA---ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred C-------cCC---hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 1 111 11223445555555555555555555444210000 000122
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
...++..+|.++...|++++|+..|+++++. .|....++..++.++...|+ .+|+.++++++... +
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-----~ 834 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-----P 834 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-----C
Confidence 2334444555555555555555555554441 22333444445555555555 44555555544431 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114 308 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 383 (395)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 383 (395)
+++. .+..+|.++...|+++ +|+.+++++++.. +. ...++..++.++...|++++|+..+++++
T Consensus 835 ~~~~---~~~~~~~~~~~~g~~~-~A~~~~~~a~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 835 NIPA---ILDTLGWLLVEKGEAD-RALPLLRKAVNIA-----PE---AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCcH---HHHHHHHHHHHcCCHH-HHHHHHHHHHhhC-----CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2222 2344555555555555 5555555555421 11 23344455555555555555555555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=6.8e-25 Score=210.49 Aligned_cols=325 Identities=14% Similarity=0.103 Sum_probs=232.4
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH------HHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 86 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 86 (395)
+|....++..+|.++...|++++|+.+|+++++..+........ ........+|.++...|++++|+..|++++
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45556788999999999999999999999999864321100000 012233456888999999999999999999
Q ss_pred HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH------------------------
Q 016114 87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV------------------------ 142 (395)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------------------------ 142 (395)
.. .|....++..+|.++...|++++|+..|++++++.. +++..
T Consensus 379 ~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-----~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 379 QV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-----GNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred Hh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 87 455667888999999999999999999999987621 11110
Q ss_pred ---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHH
Q 016114 143 ---------------GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 207 (395)
Q Consensus 143 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (395)
...+..+|.++...|++++|+..|+++++. .|+.+ .++..+|.+|...|++++|+
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-------~P~~~---~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-------DPGSV---WLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHcCCHHHHH
Confidence 112345677788899999999999999885 34443 35688999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH---------------------H-------
Q 016114 208 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI---------------------M------- 259 (395)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------------~------- 259 (395)
..+++++... |.....+..++..+...+++++|+..++++... .
T Consensus 516 ~~l~~al~~~--------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 516 ALMRRLAQQK--------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred HHHHHHHHcC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999988642 223334455555556666666666655432100 0
Q ss_pred -----HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114 260 -----TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 334 (395)
Q Consensus 260 -----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 334 (395)
...+. .+|.....+..+|.++...|++++|+..|+++++.. |+ ...++..++.++...|+++ +|+
T Consensus 588 ~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-----P~---~~~a~~~la~~~~~~g~~~-eA~ 657 (1157)
T PRK11447 588 KEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-----PG---NADARLGLIEVDIAQGDLA-AAR 657 (1157)
T ss_pred CHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHCCCHH-HHH
Confidence 00000 234445567889999999999999999999998753 33 3456778888888888888 888
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 335 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 335 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
..++++++. .|+...++..+|.++...|++++|..+|++++...
T Consensus 658 ~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888876642 22334556677888888888888888888877654
No 10
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.95 E-value=4.1e-25 Score=174.55 Aligned_cols=332 Identities=16% Similarity=0.107 Sum_probs=270.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114 22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 101 (395)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (395)
.-|.-+++.|++...+.+|+.|++.... +-.....+|..+|..|+..++|.+|+++...-+.+.+.+. +....+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEA 95 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEA 95 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccc
Confidence 3477788999999999999999987422 2234566788999999999999999999888777766654 445567
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC--------------------HHH
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN--------------------AEE 161 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~ 161 (395)
.+..+||.++...|.|++|+.+..+-+.+.+... +......+++++|.+|...|+ ++.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 7888999999999999999999999999988763 445567899999999988775 345
Q ss_pred HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh
Q 016114 162 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 241 (395)
Q Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 241 (395)
|.++|..-+++.++. .+......++.+||..|+..|+|+.|+..-+.-+.+.++.. +....-.++.++|.++.-
T Consensus 174 Av~fy~eNL~l~~~l----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 174 AVKFYMENLELSEKL----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHh----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhh
Confidence 667777777776653 45556678889999999999999999999999999988765 344556788999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114 242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS 321 (395)
Q Consensus 242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 321 (395)
.|+++.|+++|+..+.+..+. .+....+...+.||..|.-..++++|+.++.+-+.+.++. .+......+++.||.
T Consensus 248 lg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgn 323 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGN 323 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHH
Confidence 999999999999999988777 3444556778899999999999999999999999998876 445556788999999
Q ss_pred HHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhh
Q 016114 322 IQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 374 (395)
Q Consensus 322 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 374 (395)
.+...|..+ +|+.+.++.+++..++-.+. ....+..+|...-...|..+.
T Consensus 324 a~~alg~h~-kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 324 AFNALGEHR-KALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHhhhhHH-HHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCcc
Confidence 999999999 99999999999888764322 234556677777666666543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.6e-24 Score=195.04 Aligned_cols=303 Identities=10% Similarity=0.018 Sum_probs=246.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
+...+......|++++|...++..+.. .|....++..+|.+....|++++|+..+++++.. .|.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~ 108 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVC 108 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCC
Confidence 345566778899999999999998875 2344567888899999999999999999999986 566
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
...++..+|.++...|++++|+..+++++.+ .|....++..++.++...|++++|+..+++++..
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~------- 173 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE------- 173 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-------
Confidence 7788999999999999999999999999986 4555667889999999999999999999987664
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
.++++. .+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..+++++..
T Consensus 174 ~P~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~- 241 (656)
T PRK15174 174 VPPRGD---MIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR- 241 (656)
T ss_pred CCCCHH---HHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 233333 223333 4788999999999999876642 1111223356688899999999999999999873
Q ss_pred HHhhCCCCcchHHHHHHHHHHHHhcCChHH----HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114 260 TKTVGPDDQSISFPMLHLGITLYHLNRDKE----AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 335 (395)
Q Consensus 260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 335 (395)
+|....++..+|.++...|++++ |+..+++++... |....++..+|.++...|+++ +|+.
T Consensus 242 -------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~-eA~~ 305 (656)
T PRK15174 242 -------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNE-KAIP 305 (656)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHH-HHHH
Confidence 46667888999999999999986 788999888754 444567889999999999999 9999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 336 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 336 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
.+++++.. +|+...++..+|.++...|++++|+..|++++...+..
T Consensus 306 ~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 306 LLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99999975 23345667889999999999999999999998776543
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=8.5e-24 Score=181.94 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=239.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
.+..|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++.. .......
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~ 105 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR----PDLTREQ 105 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC----CCCCHHH
Confidence 456788899999999999999999985 2344677889999999999999999999988753 1111123
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
...++..+|.+|...|++++|+..|.++++. +|....++..++.++...|++++|+..++++++...
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----- 172 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG----- 172 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----
Confidence 3467889999999999999999999998864 344557788999999999999999999999877421
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
.+........+..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|...+++++..
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 243 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ- 243 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 11222344556789999999999999999999998752 334567888999999999999999999999873
Q ss_pred HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114 260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 339 (395)
+......++..++.+|...|++++|...++++++.. ++. ..+..++.++...|+++ +|...+++
T Consensus 244 ------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~-~A~~~l~~ 307 (389)
T PRK11788 244 ------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPE-AAQALLRE 307 (389)
T ss_pred ------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence 112234567889999999999999999999988752 332 22478999999999999 99999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHH--hcchhhhchhhHHHHH
Q 016114 340 VLRIQEREFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKRLSN 384 (395)
Q Consensus 340 al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~ 384 (395)
+++. .|+.......++..+.. .|+..+|+..+++.+.
T Consensus 308 ~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 308 QLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9875 23333333233333322 5689999999998875
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=4.3e-24 Score=205.04 Aligned_cols=319 Identities=16% Similarity=0.132 Sum_probs=238.4
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh--
Q 016114 22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD-- 99 (395)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 99 (395)
.+|..+...|++++|+..|+++++.. |....++..+|.++...|++++|+..|+++++.. ++.+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~ 340 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRD 340 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchh
Confidence 45888999999999999999999862 3335678899999999999999999999999863 22211
Q ss_pred ---------hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 100 ---------LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 100 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
.......+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1123345688899999999999999999987 34445678899999999999999999999999
Q ss_pred HHHHhcc---------cCCCC-----------------------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 171 RVIKDSN---------YMSLD-----------------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 171 ~~~~~~~---------~~~~~-----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
++..... ..... .......+..+|.++...|++++|+..|++++++
T Consensus 413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-- 490 (1157)
T PRK11447 413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-- 490 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 7532100 00000 0000122345677788899999999999999875
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114 219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 298 (395)
Q Consensus 219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 298 (395)
.|....++..+|.+|...|++++|+..+++++.. .|.....++.++..+...|++++|+..++++.
T Consensus 491 ------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 491 ------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 3445567889999999999999999999998862 34445566667777777777777777665431
Q ss_pred HH---------------------H------------HHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114 299 YI---------------------R------------EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 345 (395)
Q Consensus 299 ~~---------------------~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 345 (395)
.. . ...+. .+|.....+..+|.++...|+++ +|+..|+++++.
T Consensus 557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~-~A~~~y~~al~~-- 632 (1157)
T PRK11447 557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYA-AARAAYQRVLTR-- 632 (1157)
T ss_pred chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--
Confidence 10 0 00000 12233345678999999999999 999999999975
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 346 REFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 346 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
.|+...++..++.+|...|++++|+..+++++...+
T Consensus 633 ------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 633 ------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 244467889999999999999999999998876543
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2e-24 Score=206.55 Aligned_cols=316 Identities=19% Similarity=0.199 Sum_probs=233.8
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
..|....++..++.++...|++++|+.++.+++... |.....+..++..+...|++++|+..+++++..
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 596 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKALAILNEAADA--- 596 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc---
Confidence 345566778899999999999999999999998752 233456778999999999999999999998764
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
.|.....+..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|...++++++
T Consensus 597 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 597 -----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455678899999999999999999999999875 234446788999999999999999999999987
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251 (395)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 251 (395)
. .++. ..++..++.++...|++++|+.+++..... .|.....+..+|.++...|++++|+..
T Consensus 664 ~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 664 L-------KPDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred c-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 4 2333 345678999999999999999999887653 233334556677777777777777777
Q ss_pred HHHHHHHH--------------------------HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114 252 LRICLDIM--------------------------TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 305 (395)
Q Consensus 252 ~~~a~~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 305 (395)
|++++... .+.. ...|....++..+|.++...|++++|...|+++++..
T Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---- 800 (899)
T TIGR02917 726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA---- 800 (899)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----
Confidence 77665421 0000 0133444556666666666777777777766666532
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114 306 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 385 (395)
|....++..++.++...|+ . +|+.++++++.. .+++ ...+..+|.++...|++++|..+++++++.
T Consensus 801 ----p~~~~~~~~l~~~~~~~~~-~-~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 801 ----PDNAVVLNNLAWLYLELKD-P-RALEYAEKALKL-----APNI---PAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred ----CCCHHHHHHHHHHHHhcCc-H-HHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2233456667777777776 5 677777777654 2233 345667888999999999999999999887
Q ss_pred HHH
Q 016114 386 RMK 388 (395)
Q Consensus 386 ~~~ 388 (395)
.+.
T Consensus 867 ~~~ 869 (899)
T TIGR02917 867 APE 869 (899)
T ss_pred CCC
Confidence 654
No 15
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.93 E-value=8.6e-24 Score=167.14 Aligned_cols=312 Identities=17% Similarity=0.151 Sum_probs=251.9
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHH
Q 016114 3 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82 (395)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (395)
+.+++.-.++-.....+|..||+.|+..++|++|+++...-+.+.+.. .+...-+.+..++|..+...|.|++|+.++
T Consensus 41 ~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNtlKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 41 KAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNTLKVKGAFDEALTCC 118 (639)
T ss_pred HHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccchhhhhcccchHHHHH
Confidence 334444445556677889999999999999999999988777765543 223345667788999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC--------------------hHHHHHHHHHHHHHHHHHhCCCChhH
Q 016114 83 HRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------------AVDAESVFSRILKIYTKVYGENDGRV 142 (395)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~ 142 (395)
.+-+.+.++.. +......+++++|.+|...|+ ++.|.++|..-+++.++.. +....
T Consensus 119 ~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aq 194 (639)
T KOG1130|consen 119 FRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQ 194 (639)
T ss_pred HHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhh
Confidence 99999988875 455667899999999998875 4556677777777666542 34446
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 222 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (395)
..++.+||..|+-+|+|+.|+...+.-+.+.++. .+....-.++.++|.++.-.|+++.|+++|+.++.+..+..
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg- 269 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG- 269 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-
Confidence 6789999999999999999999999999998863 45555667889999999999999999999999999888775
Q ss_pred CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114 223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 302 (395)
+....+...+.||..|.-..++++|+.++++-+.|.++. .+......+++.||..+...|..++|+.+.++.+++..
T Consensus 270 -~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 270 -NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred -chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 445567788899999999999999999999999998887 44556778899999999999999999999999999988
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCch
Q 016114 303 IAFGKDSLPVGEALDCLVSIQTRLGEDD 330 (395)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (395)
++- +......+..+|.......|..+
T Consensus 347 ev~--D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 347 EVN--DTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HhC--CcchhhhhhhhhHHHHHHhCCCc
Confidence 863 22323445567777777777654
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.5e-23 Score=164.72 Aligned_cols=338 Identities=14% Similarity=0.112 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
...+..+-+.|+-++..|+|++|+.+|.+|+++++ +. ...+.+++-+|...|+|++.++...+++++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p-----~e---piFYsNraAcY~~lgd~~~Vied~TkALEl----- 178 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP-----DE---PIFYSNRAACYESLGDWEKVIEDCTKALEL----- 178 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC-----CC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhc-----
Confidence 45677788999999999999999999999999852 22 345788999999999999999999999997
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHH------------------HHHHH-----HHHHhCC-------------
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFS------------------RILKI-----YTKVYGE------------- 137 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~------------- 137 (395)
.|+...+++..+..+..+|++++|+.-.. +.+.. ....+..
T Consensus 179 ---~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 179 ---NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred ---CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 78889999999999999999998874332 11111 0000000
Q ss_pred ---------------------------------------------------------------C--ChhHHHHHHHHHHH
Q 016114 138 ---------------------------------------------------------------N--DGRVGMAMCSLAHA 152 (395)
Q Consensus 138 ---------------------------------------------------------------~--~~~~~~~~~~la~~ 152 (395)
+ -...+.++...|..
T Consensus 256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0 00123445556666
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhccc---------CC---------------CCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114 153 KCANGNAEEAVELYKKALRVIKDSNY---------MS---------------LDDSIMENMRIDLAELLHIVGRGQEGRE 208 (395)
Q Consensus 153 ~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (395)
++-.|++-.|...++.++++....+. .. .-++....+|+..|.++.-.+++++|+.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 77778888888888777765322100 00 0000111233444444444455555555
Q ss_pred HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChH
Q 016114 209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 288 (395)
Q Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 288 (395)
-|++++.+ +|..+..+..++.+..++++++++...|+.+.. .-|....++...|.++..+++++
T Consensus 416 DF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--------kFP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 416 DFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--------KFPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCCchHHHHHHHHHhhHHhHH
Confidence 55555443 244444555555555555555555555555544 23444555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 016114 289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT-RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD 367 (395)
Q Consensus 289 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 367 (395)
+|.+.|..++++.... ...+.. +..+..-|.+.. -.+++. .|+.++++|+++ +|..-.++..||.+..
T Consensus 480 ~A~k~YD~ai~LE~~~-~~~~v~-~~plV~Ka~l~~qwk~d~~-~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPRE-HLIIVN-AAPLVHKALLVLQWKEDIN-QAENLLRKAIEL--------DPKCEQAYETLAQFEL 548 (606)
T ss_pred HHHHHHHHHHhhcccc-cccccc-chhhhhhhHhhhchhhhHH-HHHHHHHHHHcc--------CchHHHHHHHHHHHHH
Confidence 6666666665543110 000101 111111111111 124444 566666666543 4555678889999999
Q ss_pred HhcchhhhchhhHHHHHHHHHHHhhhc
Q 016114 368 KLGRKEEKFPLKKRLSNLRMKYKQKVQ 394 (395)
Q Consensus 368 ~~g~~~~A~~~~~~a~~~~~~~~~~~~ 394 (395)
++|+.++|+++|+++..+.+...+.++
T Consensus 549 Q~~~i~eAielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQLARTESEMVH 575 (606)
T ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999998877664
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1e-23 Score=176.41 Aligned_cols=308 Identities=16% Similarity=0.143 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 15 LLDAILLHMGSMYSTL--ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
.....+..+|..|... -+..+|+..|.+ + ...++.+.+++..+|..|+.+++|++|..+|+.+-+.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~---- 382 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI---- 382 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 4566677777777644 344667766666 2 2234455688999999999999999999999988765
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVF-SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
.|....-.-....+++...+-- ++.++ +..++ .+|....+|..+|.+|..+++++.|+++|++|++
T Consensus 383 ----~p~rv~~meiyST~LWHLq~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ 449 (638)
T KOG1126|consen 383 ----EPYRVKGMEIYSTTLWHLQDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ 449 (638)
T ss_pred ----ccccccchhHHHHHHHHHHhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc
Confidence 3333333333444555544422 22222 22222 3455567889999999999999999999999988
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251 (395)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 251 (395)
+- +..+.+|..+|.-+.....+++|..+|+.|+.+ +|..-.+|+.+|.+|.++++++.|+-+
T Consensus 450 ld----------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 450 LD----------PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred cC----------CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHH
Confidence 52 223456677888888899999999999999875 456678899999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114 252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 331 (395)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (395)
|++|+++ +|........+|.++.+.|+.++|+.++++|+.+. +.+| -..+..+.++...++++
T Consensus 512 fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~---l~~~~~~~il~~~~~~~- 574 (638)
T KOG1126|consen 512 FQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNP---LCKYHRASILFSLGRYV- 574 (638)
T ss_pred HHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCc---hhHHHHHHHHHhhcchH-
Confidence 9999984 67777788899999999999999999999998754 3333 34678889999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 332 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 332 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
+|+..+++..++ .|+...++..+|.+|.+.|+.+.|+..|.-|.++.++-.
T Consensus 575 eal~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 575 EALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 899888887654 466678899999999999999999999999888876643
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=4.6e-22 Score=171.21 Aligned_cols=279 Identities=16% Similarity=0.122 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
...+..|..+...|++++|+..|+++++. .|....++..+|.++...|++++|...+++++.. +...
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~ 102 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-----PDLT 102 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-----CCCC
Confidence 34556688889999999999999999985 4556778999999999999999999999988753 1111
Q ss_pred -hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 140 -GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 140 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
.....++..+|.+|...|++++|...|+++++. .+ ....++..++.++...|++++|+..+++++....
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-------~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-------GD---FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------Cc---chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 223467889999999999999999999998763 11 2235668899999999999999999999876421
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114 219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 298 (395)
Q Consensus 219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 298 (395)
. +........+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|...+++++
T Consensus 173 ~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 173 D---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred C---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 111223445678999999999999999999999873 34556788899999999999999999999998
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchh
Q 016114 299 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL 378 (395)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 378 (395)
... + .....++..++.++...|+.+ +|...++++++.. ++. .....++.++...|++++|...
T Consensus 242 ~~~-----p--~~~~~~~~~l~~~~~~~g~~~-~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 242 EQD-----P--EYLSEVLPKLMECYQALGDEA-EGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred HHC-----h--hhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHHHHHHH
Confidence 642 1 223456778999999999999 9999999988752 322 2337899999999999999999
Q ss_pred hHHHHHHHHHH
Q 016114 379 KKRLSNLRMKY 389 (395)
Q Consensus 379 ~~~a~~~~~~~ 389 (395)
++++++..++.
T Consensus 305 l~~~l~~~P~~ 315 (389)
T PRK11788 305 LREQLRRHPSL 315 (389)
T ss_pred HHHHHHhCcCH
Confidence 99999886654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.5e-21 Score=179.66 Aligned_cols=327 Identities=11% Similarity=-0.017 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
..++..++.++...|++++|+..++++++. .|.... +..+|.++...|++++|+..+++++..
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-------- 145 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-------- 145 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 344456666666677777777777666654 122233 667788888888888888888888876
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHH---------------------------------------HHHHHHHHhC-
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSR---------------------------------------ILKIYTKVYG- 136 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------------------------------al~~~~~~~~- 136 (395)
.|....++..++.++...+..++|+..+++ ++..++....
T Consensus 146 ~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 146 APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 455566666778888777777776655552 2222222210
Q ss_pred -CCC----hhHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114 137 -END----GRVGMAMCS-LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 210 (395)
Q Consensus 137 -~~~----~~~~~~~~~-la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (395)
+.+ +....+... ++ .+...|++++|+..|+++++. ++..|.... ..+|.+|...|++++|+..|
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-------~~~~P~~a~--~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-------GQIIPPWAQ--RWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred cccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-------CCCCCHHHH--HHHHHHHHhcCCcHHHHHHH
Confidence 111 222223332 34 346779999999999998763 222232222 33688999999999999999
Q ss_pred HHHHHHHHhhhCCCC-hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh---h--CCCCcc--hHHHHHHHHHHHH
Q 016114 211 EECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT---V--GPDDQS--ISFPMLHLGITLY 282 (395)
Q Consensus 211 ~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~--~~~~~~--~~~~~~~la~~~~ 282 (395)
++++... +.. .........++.++...|++++|...++++....... . ....|. ...++..++.++.
T Consensus 296 ~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 296 TELFYHP-----ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHhhcC-----CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 9987531 111 1113455677778899999999999999887632100 0 011122 3456778999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 016114 283 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKV 362 (395)
Q Consensus 283 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 362 (395)
..|++++|++.+++++... |++ ...+..+|.++...|+++ +|+..+++++.+ .|+...++..+
T Consensus 371 ~~g~~~eA~~~l~~al~~~-----P~n---~~l~~~lA~l~~~~g~~~-~A~~~l~~al~l--------~Pd~~~l~~~~ 433 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-----PGN---QGLRIDYASVLQARGWPR-AAENELKKAEVL--------EPRNINLEVEQ 433 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHhcCCHH-HHHHHHHHHHhh--------CCCChHHHHHH
Confidence 9999999999999998754 333 457889999999999999 999999999975 34455688899
Q ss_pred HHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 363 VSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 363 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
|.++...|++++|...++++++..++...+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999887765544
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.8e-23 Score=173.05 Aligned_cols=276 Identities=19% Similarity=0.171 Sum_probs=224.2
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
+...++....++..+|..|+..++|++|..+|+.+-++. |..+.-+-....+++...+-- ++.++-+-+
T Consensus 345 lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~--------p~rv~~meiyST~LWHLq~~v-~Ls~Laq~L-- 413 (638)
T KOG1126|consen 345 LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE--------PYRVKGMEIYSTTLWHLQDEV-ALSYLAQDL-- 413 (638)
T ss_pred hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cccccchhHHHHHHHHHHhhH-HHHHHHHHH--
Confidence 555667777889999999999999999999999887652 333333333444444443322 222222211
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 168 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 168 (395)
-..+|..+.+|..+|.+|..+++++.|+++|++|+++ +|..+.+|..+|.-+....++|.|..+|+.
T Consensus 414 -----i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 414 -----IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred -----HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 1246777889999999999999999999999999987 677788899999999999999999999999
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114 169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248 (395)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 248 (395)
|+.+.. .--.+|+.+|.+|.++++++.|+-+|++|+++ +|........+|.++.+.|+.++|
T Consensus 481 Al~~~~----------rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 481 ALGVDP----------RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred hhcCCc----------hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHH
Confidence 987532 22567899999999999999999999999986 466677788899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114 249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 328 (395)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (395)
+.++++|+.+ +|....+.+..|.++...+++++|+..+++..++. |+...++..+|.+|.+.|+
T Consensus 543 L~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 543 LQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHcc
Confidence 9999999873 45555677889999999999999999999887655 6667789999999999999
Q ss_pred chhHHHHHHHHHHHH
Q 016114 329 DDTKLLELLKRVLRI 343 (395)
Q Consensus 329 ~~~~A~~~~~~al~~ 343 (395)
.+ .|+..|.-|.++
T Consensus 607 ~~-~Al~~f~~A~~l 620 (638)
T KOG1126|consen 607 TD-LALLHFSWALDL 620 (638)
T ss_pred ch-HHHHhhHHHhcC
Confidence 99 999999888865
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.4e-21 Score=178.33 Aligned_cols=332 Identities=13% Similarity=0.057 Sum_probs=240.7
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
.+|..+.++..+|.++...|++++|+..++++++.. +++ ..+...++.++...|++++|+..+++++..
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--- 112 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-----PQN---DDYQRGLILTLADAGQYDEALVKAKQLVSG--- 112 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 345556678899999999999999999999999862 222 445678999999999999999999999886
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA-- 169 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-- 169 (395)
.|.... +..+|.++...|++++|+..++++++. .|....++..++.++...|..++|+..++++
T Consensus 113 -----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 113 -----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred -----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 455556 888999999999999999999999987 3444455666788888888877777555521
Q ss_pred -------------------------------------HHHHHhcc---cCCCC-chHHHHHHHHHHHHHHHcCChHHHHH
Q 016114 170 -------------------------------------LRVIKDSN---YMSLD-DSIMENMRIDLAELLHIVGRGQEGRE 208 (395)
Q Consensus 170 -------------------------------------~~~~~~~~---~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (395)
++..+... ...++ .+....+.......+...|++++|+.
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 11111110 00111 12222333332234467799999999
Q ss_pred HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHHHhcCCh
Q 016114 209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRD 287 (395)
Q Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 287 (395)
.|++++.. ++..|..... .+|.+|...|++++|+..|++++.. .+..+ ........++.++...|++
T Consensus 259 ~~~~ll~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 259 EYQRLKAE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYH-----PETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHHhhcc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHHHHHHhcccH
Confidence 99987764 1223444333 3688999999999999999998752 11121 1234556778888999999
Q ss_pred HHHHHHHHHHHHHHHHH---cC--CCCh--HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 016114 288 KEAEKLVLEALYIREIA---FG--KDSL--PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360 (395)
Q Consensus 288 ~~A~~~~~~al~~~~~~---~~--~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 360 (395)
++|...++++....... ++ ...| ....+...++.++...|+.+ +|+..+++++.. .|....++.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~-eA~~~l~~al~~--------~P~n~~l~~ 397 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP-QAEMRARELAYN--------APGNQGLRI 397 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHH
Confidence 99999999887643100 00 0111 23456778999999999999 999999999865 344457889
Q ss_pred HHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 361 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
.+|.++...|++++|+..+++++.+.|+.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999987664
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.7e-21 Score=168.36 Aligned_cols=340 Identities=18% Similarity=0.155 Sum_probs=234.0
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114 8 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 87 (395)
Q Consensus 8 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 87 (395)
.+...+|...-.+...|.+.+..|+|..|+.+|.+++.+.+... +.....+|.|+..+|+.+.|+..|+++++
T Consensus 155 ~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-------aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 155 FVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-------ADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-------CCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 34455677777778888889999999999999999988754421 22344567888888888888888888877
Q ss_pred HHHHhc-----------------------------CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 88 ILELNR-----------------------------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 88 ~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
+-.... -...+..+.+++.|+.-++..|+|..+..+...++... ..
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~ 302 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----EN 302 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hh
Confidence 511100 01123344556666666666777777666666666542 12
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
.+..+..++.+|.+|..+|++++|..+|.+++... ++. ..-.+..+|..|...|+++.|..+|++.+..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-------~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-- 371 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-------NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-- 371 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-------CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHh--
Confidence 34456667777777777777777777777776531 222 2223456777777777777777777776664
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 016114 219 KYKGKEHPSFVTHLLNLAASYSRSK----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 294 (395)
Q Consensus 219 ~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 294 (395)
.|....++..||.+|...+ ..+.|..+..+++. ..|....+|..++.++....-+ .++..|
T Consensus 372 ------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--------~~~~d~~a~l~laql~e~~d~~-~sL~~~ 436 (1018)
T KOG2002|consen 372 ------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--------QTPVDSEAWLELAQLLEQTDPW-ASLDAY 436 (1018)
T ss_pred ------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHhcChH-HHHHHH
Confidence 3444555666777776664 34555555555544 2366677888999887665544 449999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHHHhcch
Q 016114 295 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES--EEVMLTLKKVVSYLDKLGRK 372 (395)
Q Consensus 295 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~ 372 (395)
..|+.+......+-. ...++++|..++..|+++ +|...|.+|+.........+. .......+++|.++...+++
T Consensus 437 ~~A~d~L~~~~~~ip---~E~LNNvaslhf~~g~~~-~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 437 GNALDILESKGKQIP---PEVLNNVASLHFRLGNIE-KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHcCCCCC---HHHHHhHHHHHHHhcChH-HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 999998887654432 357899999999999999 999999999988553322222 12355689999999999999
Q ss_pred hhhchhhHHHHHHHHHH
Q 016114 373 EEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 373 ~~A~~~~~~a~~~~~~~ 389 (395)
+.|...|..++...+.+
T Consensus 513 ~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEHPGY 529 (1018)
T ss_pred hHHHHHHHHHHHHCchh
Confidence 99999999998776654
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-20 Score=164.71 Aligned_cols=344 Identities=18% Similarity=0.211 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
+..+.+++.|+..|+..|+|..+..+...++... ...+..++.++++|.+|..+|+|++|..+|.+++..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----- 336 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA----- 336 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----
Confidence 4444567788888888899999988888888753 234567788888999999999999999999888765
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh------------------------------CCCChhHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY------------------------------GENDGRVG 143 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~~~~~~~ 143 (395)
++....-.+..+|.+|...|+++.|..+|++.+...+... ....|...
T Consensus 337 --~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 337 --DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred --CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 2222456677888888888888888888888776532110 00123344
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
.++..++.++... +...++.+|..|+.++... ..+-+ ..+++++|..++..|++.+|...+..|+.........
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~--~~~ip---~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESK--GKQIP---PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHc--CCCCC---HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 5677777766554 4444599999999887764 22222 3456999999999999999999999999885533322
Q ss_pred CC--hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 224 EH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 224 ~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
+. .......+|+|.++...++++.|.+.|...+. .+|....++..+|......++..+|...+..++.+.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 22 12355688999999999999999999998887 578888888888877777888888888888877652
Q ss_pred HHH------cC----------C------------CChHHHHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHHHHhcc
Q 016114 302 EIA------FG----------K------------DSLPVGEALDCLVSIQTRL-----GEDDTKLLELLKRVLRIQEREF 348 (395)
Q Consensus 302 ~~~------~~----------~------------~~~~~~~~~~~l~~~~~~~-----~~~~~~A~~~~~~al~~~~~~~ 348 (395)
... +| + .....+-++..||.++... .+.+ ++...+.+|++++.+++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e-k~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE-KEKKHQEKALQLYGKVL 639 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH-HHHHHHHHHHHHHHHHH
Confidence 110 11 0 0001123455677766543 2334 67777777777776655
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114 349 GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 349 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 385 (395)
. .+|.+..+-+.+|.++...|++.+|...|.++.+-
T Consensus 640 ~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 640 R-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred h-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 4 33444445555555555555555555555555443
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-20 Score=151.57 Aligned_cols=305 Identities=15% Similarity=0.115 Sum_probs=228.8
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114 22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 101 (395)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (395)
.++.++....+.++++.-++..... .-|.....-...|.+.....++++|+..|+....- +|...
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl 296 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRL 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcc
Confidence 3445555555666665555544433 11222233445677888888999999888887652 44444
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
.-.-..+++++-..+-.+-.-+.+.+..+ +.-...+...+|+.|...++.++|+.+|++|+++.+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp------- 361 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP------- 361 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-------
Confidence 44444455555444433322333333333 222334567789999999999999999999999632
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 261 (395)
....++..+|.-|..+.+...|+..|++|+++ .|..-.+|+.||..|.-++-+.=|+-+|++|...
T Consensus 362 ---~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--- 427 (559)
T KOG1155|consen 362 ---KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--- 427 (559)
T ss_pred ---chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---
Confidence 23567788999999999999999999999997 4566789999999999999999999999999883
Q ss_pred hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 016114 262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 341 (395)
Q Consensus 262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al 341 (395)
.|.....|..||.||.+.++.++|+++|.+++... +. ...++..||.+|...++.+ +|..+|++.+
T Consensus 428 -----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------dt--e~~~l~~LakLye~l~d~~-eAa~~yek~v 493 (559)
T KOG1155|consen 428 -----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------DT--EGSALVRLAKLYEELKDLN-EAAQYYEKYV 493 (559)
T ss_pred -----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------cc--chHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Confidence 45666788999999999999999999999998743 11 2357899999999999999 9999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114 342 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 385 (395)
+.. ...|...+.+..+...|+..+.+.+++++|..+..+++.-
T Consensus 494 ~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 494 EVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 876 3456677888899999999999999999999877666543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=7.9e-21 Score=175.34 Aligned_cols=311 Identities=11% Similarity=-0.038 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCc---hhHH------------
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR---AKKA------------ 78 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A------------ 78 (395)
|.....+..++......|++++|..+++++...... ..........++.+|...+. ..++
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD-----ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc-----cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 555667788889999999999999999998874111 10112233466666666654 2333
Q ss_pred ----------HHHHHHHHHHHHHhcCCCChh--hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114 79 ----------VEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 146 (395)
Q Consensus 79 ----------~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 146 (395)
...+..+... . +..|. ...++.++|.++.. +++.+|+..+.+++... |.. ...
T Consensus 448 ~~~~~~~~~~~~~~~~~~~a----l-~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~ 512 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRL----L-GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQH 512 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHh----c-ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHH
Confidence 2222222222 2 23455 77899999999987 89999999999998762 222 235
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (395)
..+|.++...|++++|+..++++... .+.++ .+..+|.++...|++++|+.++++++.. .|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~-------~p~~~----a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P 573 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH-------DMSNE----DLLAAANTAQAAGNGAARDRWLQQAEQR--------GL 573 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc-------CCCcH----HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 56677778999999999999987542 12222 2467899999999999999999999874 23
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 306 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 306 (395)
........++......|++++|+..+++++.+ .|. ...+.++|.++...|++++|+..+++++...
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~----- 639 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE----- 639 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 33344445666666779999999999999973 344 6788999999999999999999999999864
Q ss_pred CCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 307 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
|....++.++|.++...|+++ +|+..|+++++. +|+...++.++|.++..+|++++|+..|++++++.
T Consensus 640 ---Pd~~~a~~nLG~aL~~~G~~e-eAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 640 ---PNNSNYQAALGYALWDSGDIA-QSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 444467899999999999999 999999999975 34446789999999999999999999999999887
Q ss_pred HHH
Q 016114 387 MKY 389 (395)
Q Consensus 387 ~~~ 389 (395)
++.
T Consensus 708 P~~ 710 (987)
T PRK09782 708 DNQ 710 (987)
T ss_pred CCC
Confidence 654
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=9.3e-21 Score=174.85 Aligned_cols=295 Identities=9% Similarity=-0.036 Sum_probs=227.7
Q ss_pred cCCCcHH--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114 9 LKDDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 86 (395)
Q Consensus 9 l~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 86 (395)
..+..|. .+.+++.+|.++.. +++.+|+..+.+++... ++. .....+|..+...|++++|+..|+++.
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PDA----WQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cch----HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3344455 77889999999987 89999999999988753 221 135566777789999999999999864
Q ss_pred HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 016114 87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 166 (395)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 166 (395)
.. .+. ...+..+|.++...|++++|..++++++.. .|........++......|++++|+..+
T Consensus 537 ~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 537 LH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred cc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 42 111 234678899999999999999999999875 2333344555666667789999999999
Q ss_pred HHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHH
Q 016114 167 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 246 (395)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 246 (395)
+++++. .|+ ...+.++|.++...|++++|+..+++++.+ .|....++.++|.++...|+++
T Consensus 600 ~~AL~l-------~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 600 TRSLNI-------APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHHh-------CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHH
Confidence 999975 232 356789999999999999999999999986 4556678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114 247 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 326 (395)
Q Consensus 247 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (395)
+|+..+++++++ .|....++.++|.++...|++++|+..++++++.. |..+.+....|.+....
T Consensus 661 eAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 661 QSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--------DNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCchhhhhhhHHHHHH
Confidence 999999999983 56777889999999999999999999999999754 45555666777777777
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhh
Q 016114 327 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK 375 (395)
Q Consensus 327 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 375 (395)
.+++ .|.+.+.++..+- +... +....|.++...+++-.+
T Consensus 725 ~~~~-~a~~~~~r~~~~~--------~~~~-a~~~~g~~~~~~~~~~~~ 763 (987)
T PRK09782 725 FNFR-RLHEEVGRRWTFS--------FDSS-IGLRSGAMSTANNNVGGA 763 (987)
T ss_pred HHHH-HHHHHHHHHhhcC--------ccch-hccccchHhhhcccccCC
Confidence 7777 7777777766531 2222 555666666666665433
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.3e-20 Score=147.05 Aligned_cols=276 Identities=13% Similarity=0.087 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 94 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 94 (395)
...-.-...|.+...+.++++|+..|+...+. +|....-+...+++++...+-.+---+.+.+..+
T Consensus 260 ~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i------ 325 (559)
T KOG1155|consen 260 NSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI------ 325 (559)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh------
Confidence 33334456788899999999999999987652 4444444555566666555433333333333333
Q ss_pred CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
+.-.+.+...+|+.|...++.++|+.+|++|+++ +|....++..+|.-|..+++...|+..|++|+++.+
T Consensus 326 --dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 326 --DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred --ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 3344567778899999999999999999999987 677888999999999999999999999999999753
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114 175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 254 (395)
. --++|+.||..|..++-..=|+-+|++|... .|.....|..||.+|.+.++.++|+.+|.+
T Consensus 396 ~----------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 396 R----------DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred h----------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2 2567899999999999999999999999885 344556788999999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 334 (395)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 334 (395)
++.. . .....++..||.+|.+.++..+|..+|++.++.. ...|...+.+..+...|+.-+.+.++++ +|.
T Consensus 458 ai~~------~--dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~-~As 527 (559)
T KOG1155|consen 458 AILL------G--DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFD-EAS 527 (559)
T ss_pred HHhc------c--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchH-HHH
Confidence 9883 1 1245688999999999999999999999999976 3445666778888888999999999999 888
Q ss_pred HHHHHHHH
Q 016114 335 ELLKRVLR 342 (395)
Q Consensus 335 ~~~~~al~ 342 (395)
.+..+++.
T Consensus 528 ~Ya~~~~~ 535 (559)
T KOG1155|consen 528 YYATLVLK 535 (559)
T ss_pred HHHHHHhc
Confidence 88777764
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.8e-19 Score=145.90 Aligned_cols=275 Identities=17% Similarity=0.230 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
..++...+..++..++|.+....++..++.. +-++... -..+| ++...|+..+-..+-.+.++ .
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-----pfh~~~~--~~~ia-~l~el~~~n~Lf~lsh~LV~--------~ 307 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-----PFHLPCL--PLHIA-CLYELGKSNKLFLLSHKLVD--------L 307 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-----CCCcchH--HHHHH-HHHHhcccchHHHHHHHHHH--------h
Confidence 3455667888888999999888888877752 2233222 23445 77777776554444444333 3
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.|..+.+|+.+|..|...|++.+|..+|.++..+ ++..+.+|...|..+...|..++|+..|..|-++...
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G- 378 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG- 378 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-
Confidence 7888899999999999999999999999999876 6777889999999999999999999999999998743
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
..-|. ..+|.-|...++++-|..+|.+|+.+. |.....++.+|.+....+.|.+|..+|+.++
T Consensus 379 ----~hlP~-----LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 379 ----CHLPS-----LYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred ----CcchH-----HHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 23333 458999999999999999999999874 4445678899999999999999999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHH
Q 016114 257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 336 (395)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 336 (395)
...+... +..+....++.+||.++.+++.+++|+.++++++.+. |....++..+|-+|..+|+.+ .|+++
T Consensus 442 ~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld-~Aid~ 511 (611)
T KOG1173|consen 442 EVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLD-KAIDH 511 (611)
T ss_pred HHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChH-HHHHH
Confidence 6555543 3334566778999999999999999999999999865 444567889999999999999 99999
Q ss_pred HHHHHHH
Q 016114 337 LKRVLRI 343 (395)
Q Consensus 337 ~~~al~~ 343 (395)
|.+++.+
T Consensus 512 fhKaL~l 518 (611)
T KOG1173|consen 512 FHKALAL 518 (611)
T ss_pred HHHHHhc
Confidence 9999975
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=5.2e-18 Score=147.18 Aligned_cols=315 Identities=15% Similarity=0.104 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
...+...|+..+..|++++|...+.+++.. .|....++..||.+|..+|+.+++...+-.|-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------- 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------- 202 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence 445677888889999999999999999885 3566778999999999999999999888776554
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.|.....|..++.....+|++.+|.-+|.+|++. .|.........+.+|.+.|+...|...|.+++....
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-- 272 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-- 272 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--
Confidence 3444478889999999999999999999999987 455567788899999999999999999999988642
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
+.+...........+..+...++-+.|.+.++.++..... ......++.++.++.....++.|........
T Consensus 273 ---~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~------~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 273 ---PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD------EASLEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred ---chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc------cccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 1122223333345577778888888899888888773221 1122334456777777777777766554433
Q ss_pred H----------------------HHH----------------------------------HhhCCCCcchHHHHHHHHHH
Q 016114 257 D----------------------IMT----------------------------------KTVGPDDQSISFPMLHLGIT 280 (395)
Q Consensus 257 ~----------------------~~~----------------------------------~~~~~~~~~~~~~~~~la~~ 280 (395)
. ++. ........+....+..++..
T Consensus 344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA 423 (895)
T ss_pred ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence 2 000 00000012334567788999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 016114 281 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360 (395)
Q Consensus 281 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 360 (395)
+...|++.+|+.++...... .....+..|..+|.+|..+|.++ +|+++|++++.. .|+..++..
T Consensus 424 l~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e-~A~e~y~kvl~~--------~p~~~D~Ri 487 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYE-EAIEFYEKVLIL--------APDNLDARI 487 (895)
T ss_pred HHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CCCchhhhh
Confidence 99999999999998877552 22223567899999999999999 999999999974 455677889
Q ss_pred HHHHHHHHhcchhhhchhhHHH
Q 016114 361 KVVSYLDKLGRKEEKFPLKKRL 382 (395)
Q Consensus 361 ~la~~~~~~g~~~~A~~~~~~a 382 (395)
.|+.++..+|++++|.+.+++.
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcc
Confidence 9999999999999999888774
No 30
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.85 E-value=3.1e-17 Score=128.18 Aligned_cols=349 Identities=16% Similarity=0.092 Sum_probs=271.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
...-|.-++...++++|+..+.+.+..... .......+..+..+...+|.|++++.+--..++.+.... +...
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~--ds~~ 81 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD-----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE--DSDF 81 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHH-----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 455677788889999999999998876543 234556677778889999999999988777666665543 4556
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND-GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 178 (395)
...++.+++..+....++.+++.+-...+.+- +... ..-......++..+..++.++++++.|+.|+++....
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~-- 155 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN-- 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--
Confidence 67889999999999999999988887776541 1111 1123455668999999999999999999999998754
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC--ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
.|+..-..++..||..+....++++|.-+..+|.++.....-.+ ......+++.++..+..+|+...|.++.+++.
T Consensus 156 --~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 156 --DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred --CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 45555567778999999999999999999999999987654222 12345577889999999999999999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCch----hH
Q 016114 257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD----TK 332 (395)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~ 332 (395)
++.-.. .+.+....++..+|.+|...|+.+.|..-|++|....... .+......++...+.++....-.. -.
T Consensus 234 klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Cr 309 (518)
T KOG1941|consen 234 KLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCR 309 (518)
T ss_pred HHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 987665 5667788899999999999999999999999999988765 344555666777777776554333 04
Q ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 333 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 333 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
|+++-++++++..++ | ........+..++.+|...|.-++=...+.++-+..+..
T Consensus 310 ale~n~r~levA~~I-G-~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 310 ALEFNTRLLEVASSI-G-AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET 364 (518)
T ss_pred hhHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 999999999998875 3 234567888999999999999888888888776665543
No 31
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=1.8e-17 Score=154.40 Aligned_cols=309 Identities=11% Similarity=0.044 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
.+|..+-..+...|+++.|..++.++.+. +. .| ...++..+...|...|+.++|...|++.... ..
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-----Gl-~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-------Gv 503 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEA-----GL-KA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-------GV 503 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-------CC
Confidence 34566667777888888888888776553 11 11 1234666777788888888888888776542 11
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
.....++..+...|.+.|++++|...|.+.... .-.|+ ..+++.+...|.+.|++++|...+.++......
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-- 574 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP-- 574 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC--
Confidence 223456777777888888888888887776542 11222 346677777777777777777777776542110
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
..|+ ..++..+...|.+.|++++|.++|++..+. +.+....+++.+...|.+.|++++|..+|.+...
T Consensus 575 -i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 575 -IDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred -CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1122 234455666777777777777777665442 1112234556666666667777777666666543
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
. .-.|+ ..++..+...+...|++++|.++++++.+. .......++..+...|.+.|+.+ +|..+|
T Consensus 643 ~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~e-eA~~lf 707 (1060)
T PLN03218 643 K------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWK-KALELY 707 (1060)
T ss_pred c------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 1 11222 334555556666666666666666554431 11111234555555555556555 555555
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114 338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 383 (395)
Q Consensus 338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 383 (395)
++.... + ..|+ ..++..+...|.+.|++++|.++|+++.
T Consensus 708 ~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 708 EDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 554321 0 1111 2345555555555555555555555443
No 32
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.85 E-value=6.9e-18 Score=130.91 Aligned_cols=322 Identities=14% Similarity=0.137 Sum_probs=245.6
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
.+|..+.-.+.+|..++..|++..|+..|..|++. +|....+++..|.+|..+|+-.-|+.-+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 45666667889999999999999999999999874 4667778999999999999999999999999987
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH------------HHHHHHHHHHHHCCCH
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG------------MAMCSLAHAKCANGNA 159 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------~~~~~la~~~~~~g~~ 159 (395)
.|+...+....|.++.++|++++|+.-|.+++..-. ...... ..+......+...|++
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~-----s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP-----SNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 678888889999999999999999999999986421 111111 1233344556778999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHH
Q 016114 160 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 239 (395)
Q Consensus 160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 239 (395)
..|+.+....+++. ++-+..+...+.+|...|++..|+.-++.+-++. .+....++.++.++
T Consensus 172 ~~ai~~i~~llEi~----------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ----------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLL 233 (504)
T ss_pred hhHHHHHHHHHhcC----------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHH
Confidence 99999999998863 2334556778999999999999999998876652 23456788899999
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH---------HHHHHhcCChHHHHHHHHHHHHHHHHHcCCC-C
Q 016114 240 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL---------GITLYHLNRDKEAEKLVLEALYIREIAFGKD-S 309 (395)
Q Consensus 240 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~ 309 (395)
...|+.+.++...++++.+ .++|......|-.+ +.-....++|.++++..++.++.- |. .
T Consensus 234 Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-----p~~~ 303 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-----PEET 303 (504)
T ss_pred HhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----Cccc
Confidence 9999999999999888873 34443332222222 223344566666666666555421 22 1
Q ss_pred hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 310 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
+-.......+..|+...|++. +|+....+++++ .|+.+.++..-|..|.....|++|+.-|++|.++.++.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~-eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFG-EAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred ceeeeeeheeeecccccCCHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 222344556778888889888 899888888864 57778999999999999999999999999999887765
Q ss_pred Hh
Q 016114 390 KQ 391 (395)
Q Consensus 390 ~~ 391 (395)
..
T Consensus 375 ~~ 376 (504)
T KOG0624|consen 375 TR 376 (504)
T ss_pred HH
Confidence 43
No 33
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=2.2e-17 Score=153.85 Aligned_cols=311 Identities=13% Similarity=0.069 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
..++..+...|...|++++|..+|.++.+. +. .|+ ..++..+...|.+.|++++|...|.+.... + -
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-----Gv-~Pd-vvTynaLI~gy~k~G~~eeAl~lf~~M~~~-----G-v 538 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNA-----GV-EAN-VHTFGALIDGCARAGQVAKAFGAYGIMRSK-----N-V 538 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-----C-C
Confidence 345778889999999999999999988653 11 122 356788899999999999999999887653 1 1
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.| ...++..+...|.+.|++++|.+.+.+...... .-.|+ ..++..+...|.+.|++++|.++|+++.+..
T Consensus 539 ~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g--- 609 (1060)
T PLN03218 539 KP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN--- 609 (1060)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---
Confidence 23 256788999999999999999999998865311 11233 3578888899999999999999999887631
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
..++ ..+++.+...|.+.|++++|..+|++.... | -.|+ ..++..+...+.+.|++++|.++++++.
T Consensus 610 --i~p~----~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 610 --IKGT----PEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred --CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1122 345678899999999999999999987653 1 1233 4577888999999999999999999877
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHH
Q 016114 257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 336 (395)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 336 (395)
+. ..+....++..+...|.+.|++++|.++|++.... ...|+ ..++..+...|.+.|+.+ +|.++
T Consensus 677 k~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~Pd-vvtyN~LI~gy~k~G~~e-eAlel 741 (1060)
T PLN03218 677 KQ-------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRPT-VSTMNALITALCEGNQLP-KALEV 741 (1060)
T ss_pred Hc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHH-HHHHH
Confidence 51 22334567889999999999999999999876542 12233 356889999999999999 99999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114 337 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 384 (395)
Q Consensus 337 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 384 (395)
|++.... .-.|+ ..++..+...+.+.|++++|..++.++.+
T Consensus 742 f~eM~~~------Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 742 LSEMKRL------GLCPN-TITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9987642 12233 34667777899999999999999998865
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.6e-18 Score=140.16 Aligned_cols=329 Identities=14% Similarity=0.120 Sum_probs=249.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
+...|+..+..|+|+.|+.+|..++.+. |.....+.+...+|...|+|++|+.--.+..++ .|.
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~--------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------~p~ 68 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLS--------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--------NPD 68 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccC--------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--------CCc
Confidence 3456888889999999999999998863 223345667777888888888888877777765 677
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH---------------------------------------------
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--------------------------------------------- 134 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------------- 134 (395)
++..|..+|..+...|+|++|+..|.+.++.-...
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 78888888888888888888888887765431000
Q ss_pred ------------------------------h----------------CCCCh---------------h------HHHHHH
Q 016114 135 ------------------------------Y----------------GENDG---------------R------VGMAMC 147 (395)
Q Consensus 135 ------------------------------~----------------~~~~~---------------~------~~~~~~ 147 (395)
. ....| . .+....
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 0 00000 0 123356
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh
Q 016114 148 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 227 (395)
Q Consensus 148 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (395)
.+|.......+++.|+..|..++++... ...+.+.+.+|...|.+.+.+.....+++....... +...
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~-----------it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~kl 296 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATD-----------ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKL 296 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhh-----------hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHH
Confidence 7788888999999999999999987521 344578899999999999999888888776443321 1122
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH--hh----------------CCCCcchHHHHHHHHHHHHhcCChHH
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK--TV----------------GPDDQSISFPMLHLGITLYHLNRDKE 289 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~ 289 (395)
...++..+|..|...++++.|+.+|++++.-.+. .. .--.|..+.-...-|..++..|+|..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 4556666888999999999999999998764322 00 01123444445566899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 016114 290 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL 369 (395)
Q Consensus 290 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 369 (395)
|+..|.+++... |+.+..+.+.|-+|.++|.+. .|+...++++++ +|.....+..-|.++..+
T Consensus 377 Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~-~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 377 AVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYP-EALKDAKKCIEL--------DPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHH
Confidence 999999988732 677788999999999999999 999999999875 688889999999999999
Q ss_pred cchhhhchhhHHHHHHHHHHHhhh
Q 016114 370 GRKEEKFPLKKRLSNLRMKYKQKV 393 (395)
Q Consensus 370 g~~~~A~~~~~~a~~~~~~~~~~~ 393 (395)
.+|++|.+.|+++++..++..+.+
T Consensus 440 k~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHH
Confidence 999999999999999988776654
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-18 Score=143.37 Aligned_cols=277 Identities=16% Similarity=0.141 Sum_probs=216.4
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
.+...+..++..++|.+..+.....++. +++.....-..+| ++...|+.. .+|.-+.++.+ ..|
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~-------dpfh~~~~~~~ia-~l~el~~~n---~Lf~lsh~LV~-----~yP 309 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEK-------DPFHLPCLPLHIA-CLYELGKSN---KLFLLSHKLVD-----LYP 309 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhh-------CCCCcchHHHHHH-HHHHhcccc---hHHHHHHHHHH-----hCC
Confidence 3444556666777777777777776665 3333333445566 677777654 44444444432 367
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 220 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (395)
..+..|+.+|..|...|++.+|.++|.++..+- +..+.+|...|..+...|..++|+..|..|-++....
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD----------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD----------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC----------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 777889999999999999999999999997752 3345677889999999999999999999998876432
Q ss_pred hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 221 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
. .....+|.-|...+++.-|..+|.+|+.+. |.....+..+|.+.+..+.+.+|..+|+.++..
T Consensus 380 h--------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 380 H--------LPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred c--------chHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 1 234568888999999999999999999863 444556789999999999999999999999976
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhH
Q 016114 301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK 380 (395)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 380 (395)
.+... +..+.....+.+||.++.+++.++ +|+.+|++++.+ .|..+.++..+|-+|..+|+++.|+++|.
T Consensus 444 ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~-eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 444 IKSVL-NEKIFWEPTLNNLGHAYRKLNKYE-EAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred hhhcc-ccccchhHHHHhHHHHHHHHhhHH-HHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 66654 333455667899999999999999 999999999975 34457788999999999999999999999
Q ss_pred HHHHHHHHH
Q 016114 381 RLSNLRMKY 389 (395)
Q Consensus 381 ~a~~~~~~~ 389 (395)
+++.+.+..
T Consensus 514 KaL~l~p~n 522 (611)
T KOG1173|consen 514 KALALKPDN 522 (611)
T ss_pred HHHhcCCcc
Confidence 999887653
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=5.7e-19 Score=142.09 Aligned_cols=319 Identities=14% Similarity=0.151 Sum_probs=202.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH--------
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE-------- 90 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------- 90 (395)
.-.++|++++...+|.+|+.+|+-+++..+.+ +....+..+.++|..+.+.|.|+.|+..|..+.+...
T Consensus 239 lkmnigni~~kkr~fskaikfyrmaldqvpsi---nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl 315 (840)
T KOG2003|consen 239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSI---NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNL 315 (840)
T ss_pred eeeeecceeeehhhHHHHHHHHHHHHhhcccc---chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhh
Confidence 34578999999999999999999998865443 3446677888889888899999998888877654210
Q ss_pred ------------------Hh---c----------CCCChh----------------------------------------
Q 016114 91 ------------------LN---R----------GTESAD---------------------------------------- 99 (395)
Q Consensus 91 ------------------~~---~----------~~~~~~---------------------------------------- 99 (395)
+. . ..++|+
T Consensus 316 ~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~ 395 (840)
T KOG2003|consen 316 IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIA 395 (840)
T ss_pred hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccc
Confidence 00 0 001110
Q ss_pred ----------------------hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH--------------Hh-CCC----
Q 016114 100 ----------------------LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK--------------VY-GEN---- 138 (395)
Q Consensus 100 ----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~-~~~---- 138 (395)
....-.+-+..+.+.|+++.|++.+.-.-..-.+ .. |.+
T Consensus 396 ~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~a 475 (840)
T KOG2003|consen 396 PDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADA 475 (840)
T ss_pred cchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHH
Confidence 0011123345678889999998876432111000 00 000
Q ss_pred ----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114 139 ----------DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 208 (395)
Q Consensus 139 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (395)
+...+.++.+-|.+-+..|++++|.+.|++++. ++.....+++++|..+..+|+.++|++
T Consensus 476 qqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~----------ndasc~ealfniglt~e~~~~ldeald 545 (840)
T KOG2003|consen 476 QQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN----------NDASCTEALFNIGLTAEALGNLDEALD 545 (840)
T ss_pred HHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc----------CchHHHHHHHHhcccHHHhcCHHHHHH
Confidence 111122344445555667777777777777765 223335566778888888888888888
Q ss_pred HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChH
Q 016114 209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 288 (395)
Q Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 288 (395)
+|-+.-.+.. ..+.++..++.+|....+..+|++++.++..+ -|....++..||.+|-+.|+-.
T Consensus 546 ~f~klh~il~--------nn~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 546 CFLKLHAILL--------NNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred HHHHHHHHHH--------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchh
Confidence 8777665542 23456777788888888888888877776552 2333445667777777777777
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 016114 289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK 368 (395)
Q Consensus 289 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 368 (395)
+|..++-.....+ |...++..+|+..|....-.+ +|+.+|+++.-+ .|........++.|+.+
T Consensus 610 qafq~~ydsyryf--------p~nie~iewl~ayyidtqf~e-kai~y~ekaali--------qp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 610 QAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSE-KAINYFEKAALI--------QPNQSKWQLMIASCFRR 672 (840)
T ss_pred hhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHH-HHHHHHHHHHhc--------CccHHHHHHHHHHHHHh
Confidence 7777665554433 333445556676666665555 777777777533 34445556677888888
Q ss_pred hcchhhhchhhHHHH
Q 016114 369 LGRKEEKFPLKKRLS 383 (395)
Q Consensus 369 ~g~~~~A~~~~~~a~ 383 (395)
.|+|.+|..+|+..-
T Consensus 673 sgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIH 687 (840)
T ss_pred cccHHHHHHHHHHHH
Confidence 888888888877654
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=4.6e-20 Score=150.52 Aligned_cols=265 Identities=23% Similarity=0.235 Sum_probs=108.5
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
.+|.++...|++++|++.+.+.+... .+|.....+..+|.+....++++.|+..|++.+..- +...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~ 78 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANP 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------cccc
Confidence 56999999999999999997655431 134455777788999999999999999999998752 2233
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
..+..++.+ ...+++++|..+++++.+.. +++ ..+.....++...++++++...++++....
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------ 140 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDP----RYLLSALQLYYRLGDYDEAEELLEKLEELP------ 140 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T------
T ss_pred ccccccccc-cccccccccccccccccccc-------ccc----chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------
Confidence 445666666 68999999999998877632 121 223446677889999999999999876421
Q ss_pred CChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114 224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 224 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 303 (395)
..+.....+..+|.++...|++++|+..++++++. .|....+...++.++...|+.+++.+.+.......
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-- 210 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-- 210 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence 23445677889999999999999999999999984 45566677889999999999999888877766543
Q ss_pred HcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114 304 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 383 (395)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 383 (395)
+.+|. .+..+|.++...|+++ +|+.+|++++.. +|..+.++..+|.++...|+.++|..++++++
T Consensus 211 ---~~~~~---~~~~la~~~~~lg~~~-~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 ---PDDPD---LWDALAAAYLQLGRYE-EALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---HTSCC---HCHHHHHHHHHHT-HH-HHHHHHHHHHHH--------STT-HHHHHHHHHHHT----------------
T ss_pred ---cCHHH---HHHHHHHHhccccccc-cccccccccccc--------cccccccccccccccccccccccccccccccc
Confidence 23333 4668899999999999 999999998864 34456778899999999999999999999987
Q ss_pred HH
Q 016114 384 NL 385 (395)
Q Consensus 384 ~~ 385 (395)
..
T Consensus 276 ~~ 277 (280)
T PF13429_consen 276 RL 277 (280)
T ss_dssp --
T ss_pred cc
Confidence 64
No 38
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.83 E-value=1.8e-16 Score=151.14 Aligned_cols=352 Identities=15% Similarity=0.047 Sum_probs=255.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc-ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCCh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 98 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 98 (395)
....+.++...|++++|..++.++.......... +..........++.++...|++++|...+++++.... ..+..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~ 488 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYY 488 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHH
Confidence 3456777888999999999999887664332101 1122445556678899999999999999999987521 11222
Q ss_pred hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114 99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178 (395)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 178 (395)
....+...+|.++...|++++|...+.+++...+.. + .......++.++|.++...|++++|...+++++.+....
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-- 564 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ-- 564 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--
Confidence 244567789999999999999999999999987764 2 223345577899999999999999999999999988764
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
..+..+....++..+|.++...|++++|...+.+++.+..... ......++..++.++...|++++|...+.++..+
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1222233344456789999999999999999999998876432 2234566778999999999999999999999886
Q ss_pred HHHhhCCCCcch-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 259 MTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
.... ...... ..........+...|+.+.|..++....... . ............++.++...|+++ +|...+
T Consensus 642 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~-~~~~~~~~~~~~~a~~~~~~g~~~-~A~~~l 714 (903)
T PRK04841 642 LGNG--RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---F-ANNHFLQGQWRNIARAQILLGQFD-EAEIIL 714 (903)
T ss_pred Hhcc--cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---C-ccchhHHHHHHHHHHHHHHcCCHH-HHHHHH
Confidence 5442 111111 1111112244556889999988876644311 0 111112233567899999999999 999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
++++...+.. ........++..+|.++...|+.++|...+.+++++....+
T Consensus 715 ~~al~~~~~~--g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 715 EELNENARSL--RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHh--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 9999986553 23356678889999999999999999999999998876543
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=6.8e-17 Score=124.37 Aligned_cols=304 Identities=16% Similarity=0.147 Sum_probs=223.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114 22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 101 (395)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (395)
..|.-+.-..+.++|++.|...++. +|...++...||..+...|..+.|+.+.+..+.. .+-......
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~ 107 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRL 107 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHH
Confidence 4455566678899999999888763 5678899999999999999999999988766542 111223445
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
.+...||.-|+..|-++.|+..|....+. ......++..|..+|....+|++|++..++..++. ..+
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-----~q~ 174 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-----GQT 174 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-----Ccc
Confidence 68889999999999999999999987753 22234578889999999999999999999887764 234
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 261 (395)
....++..+..+|..+....+.+.|...+.+|++. +|..+.+-..+|.++...|+++.|++.++.+++
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e---- 242 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE---- 242 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH----
Confidence 56778888999999999999999999999999884 566667778899999999999999999999887
Q ss_pred hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 016114 262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 341 (395)
Q Consensus 262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al 341 (395)
.++.....+...|..+|..+|+.++....+.++.+... .+. ....++..-....-.+ .|..++.+-+
T Consensus 243 ---Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~~---~~l~l~~lie~~~G~~-~Aq~~l~~Ql 309 (389)
T COG2956 243 ---QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GAD---AELMLADLIELQEGID-AAQAYLTRQL 309 (389)
T ss_pred ---hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Ccc---HHHHHHHHHHHhhChH-HHHHHHHHHH
Confidence 35556677888999999999999999999998877541 122 1233444444433344 6666655554
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHH--hcchhhhchhhHHHH
Q 016114 342 RIQEREFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKRLS 383 (395)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~ 383 (395)
. .+|.....+..+..-... -|+..+....++..+
T Consensus 310 ~--------r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 310 R--------RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred h--------hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3 345544433333222221 233455555555543
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=7.9e-20 Score=149.14 Aligned_cols=266 Identities=20% Similarity=0.186 Sum_probs=106.7
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 100 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (395)
..+|.+++..|++++|+..+.+.+... .+|.....+..+|.+....+++++|+..|++.+.. ++..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc--------cccc
Confidence 367999999999999999997665432 12344466777899999999999999999998875 2234
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 180 (395)
...+..++.+ ...+++++|..+++++.+.. .++ ..+.....++...++++++...++++....
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------- 140 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP------- 140 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred cccccccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc-------
Confidence 4456666766 68999999999998876542 122 334556678899999999999999977421
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 260 (395)
..+.-...+..+|.++...|++++|+..++++++. .|....+...++.++...|+.+++.+.+.......
T Consensus 141 -~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~- 210 (280)
T PF13429_consen 141 -AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA- 210 (280)
T ss_dssp ----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 11122445678999999999999999999999986 35555677789999999999999888877766532
Q ss_pred HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 340 (395)
Q Consensus 261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 340 (395)
+.+|. .+..+|.++...|++++|+.++++++... |....++..+|.++...|+.+ +|..+++++
T Consensus 211 ----~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~--------p~d~~~~~~~a~~l~~~g~~~-~A~~~~~~~ 274 (280)
T PF13429_consen 211 ----PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLN--------PDDPLWLLAYADALEQAGRKD-EALRLRRQA 274 (280)
T ss_dssp ----HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS--------TT-HHHHHHHHHHHT----------------
T ss_pred ----cCHHH---HHHHHHHHhcccccccccccccccccccc--------ccccccccccccccccccccc-ccccccccc
Confidence 23333 45678999999999999999999988743 334456789999999999999 999999988
Q ss_pred HHH
Q 016114 341 LRI 343 (395)
Q Consensus 341 l~~ 343 (395)
+..
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 754
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=2.8e-17 Score=146.17 Aligned_cols=252 Identities=12% Similarity=-0.001 Sum_probs=190.9
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh---------CchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
..+++++|+.+|++++++ +|....++..+|.++... +++++|...+++++++ +|.
T Consensus 273 ~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~ 336 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHN 336 (553)
T ss_pred CHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCC
Confidence 345678999999999876 244456677778776543 3478999999999886 567
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
...++..+|.++...|++++|+..|++++++ +|....++..+|.++...|++++|+..+++++++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l------- 401 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKL------- 401 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 7788999999999999999999999999987 4555678899999999999999999999999985
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
.|.++.. ...++.++...|++++|+..+++++.. ..|.....+..+|.++...|++++|...+.+...
T Consensus 402 ~P~~~~~---~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-- 469 (553)
T PRK12370 402 DPTRAAA---GITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-- 469 (553)
T ss_pred CCCChhh---HHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--
Confidence 3343322 234555677789999999999998764 2344455778899999999999999999987654
Q ss_pred HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114 260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 339 (395)
..|........++..|...|+ +|...+++.++..... +.++ ..+..++.-.|+.+ .+... ++
T Consensus 470 ------~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~-~~~~~-~~ 531 (553)
T PRK12370 470 ------QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAI-AEKMW-NK 531 (553)
T ss_pred ------ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhH-HHHHH-HH
Confidence 345556677788888888884 8888888876655432 2222 23666777778776 55444 44
Q ss_pred HH
Q 016114 340 VL 341 (395)
Q Consensus 340 al 341 (395)
+.
T Consensus 532 ~~ 533 (553)
T PRK12370 532 FK 533 (553)
T ss_pred hh
Confidence 43
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=1.6e-18 Score=133.44 Aligned_cols=286 Identities=14% Similarity=0.103 Sum_probs=225.7
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh--hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 132 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 132 (395)
.|....+++. .+++...+...|-......+++-.......+... ...-..+|.||...|-+.+|.+.++.++...
T Consensus 177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~- 253 (478)
T KOG1129|consen 177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF- 253 (478)
T ss_pred ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-
Confidence 3455555554 3566777888887777766665433222222222 2344579999999999999999999998752
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
.++ .++..|+.+|.+..++..|+..+.+.++.. |.+ ...+..+++++..++++++|.++|+.
T Consensus 254 -----~~~---dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~---VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 254 -----PHP---DTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFD---VTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred -----Cch---hHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------Cch---hhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 233 567789999999999999999999998753 121 33457789999999999999999999
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114 213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 292 (395)
Q Consensus 213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 292 (395)
+++. ++..+.+...+|.-|.-.++++-|..+|++.+.+ |..+ ...+.++|.|+...++++-++.
T Consensus 316 vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~s---peLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 316 VLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQS---PELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCC---hHHHhhHHHHHHhhcchhhhHH
Confidence 9874 4555666677888899999999999999999984 3333 4567899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcch
Q 016114 293 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK 372 (395)
Q Consensus 293 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 372 (395)
.|++++.... .....+.+|++||.+....|++. -|...|+-++. .+++..+++.+||.+-.+.|+.
T Consensus 380 sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~n-lA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 380 SFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFN-LAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHhhcc-----CcchhhhhhhccceeEEeccchH-HHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCch
Confidence 9999998763 33456788999999999999999 99999998884 4567789999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHh
Q 016114 373 EEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 373 ~~A~~~~~~a~~~~~~~~~ 391 (395)
++|..++..+-...+.+-+
T Consensus 446 ~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHHHHHHHhhhhCccccc
Confidence 9999999999877766543
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=3.9e-17 Score=131.70 Aligned_cols=285 Identities=16% Similarity=0.132 Sum_probs=223.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC--chhHHHHHHHHHHHHHHHhcCCCCh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESA 98 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 98 (395)
.+.+-.++..|+++.|++.+.- +.+ .++.....+-.++...++.+| ++.+|..+...++.+ +.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv----~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dr 487 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKV----FEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DR 487 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHH----HHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cc
Confidence 4556678889999999877642 222 233334445566776666654 788898888888876 34
Q ss_pred hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114 99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178 (395)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 178 (395)
..+.++.+-|.+-+..|++++|.+.|.+++. ++.....+++++|..+..+|+.++|+.+|-+.-.++...
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn-- 557 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-- 557 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--
Confidence 5567788899999999999999999999985 456677899999999999999999999999988887643
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
+.++..++.+|....+..+|++++.++..+. |....++..||.+|-+.|+-.+|.+++-....
T Consensus 558 --------~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyr- 620 (840)
T KOG2003|consen 558 --------AEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR- 620 (840)
T ss_pred --------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhccc-
Confidence 5677899999999999999999999887652 33445678899999999999999998876655
Q ss_pred HHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 016114 259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 338 (395)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 338 (395)
..|....+...||..|....-+++|+.+|+++--+. |.....-..++.|+.+.|++. +|.+.|+
T Consensus 621 -------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc~rrsgnyq-ka~d~yk 684 (840)
T KOG2003|consen 621 -------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASCFRRSGNYQ-KAFDLYK 684 (840)
T ss_pred -------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHhcccHH-HHHHHHH
Confidence 345666777889999999999999999999986543 555556677899999999999 9999888
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Q 016114 339 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 371 (395)
Q Consensus 339 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 371 (395)
..-.- .|...+.+.-|.++.-..|-
T Consensus 685 ~~hrk--------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 685 DIHRK--------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHh--------CccchHHHHHHHHHhccccc
Confidence 76543 35556666667777666654
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.8e-19 Score=138.67 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=201.9
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
-..+|.||+..|.+.+|...++.++... .+ .+++..++.+|....+...|+..+.+.++. .|.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~------~~---~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~ 288 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF------PH---PDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPF 288 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC------Cc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCc
Confidence 3689999999999999999999998743 22 345677899999999999999999998875 566
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
....+..++.++..++++++|.++|+.+++. ++...++...+|..|+-.++++-|+.+|++.+.+.
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG------ 354 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG------ 354 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc------
Confidence 7778889999999999999999999999976 55556677788999999999999999999999863
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
..++. .+.|+|.+...-++++-++..|++|+.... .....+.+|+|+|.+....|++.-|..+|+-++.
T Consensus 355 -~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-- 423 (478)
T KOG1129|consen 355 -AQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-- 423 (478)
T ss_pred -CCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--
Confidence 33333 458999999999999999999999998753 2345678999999999999999999999998886
Q ss_pred HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
.++....++.+||.+-.+.|+.++|..++..+-...
T Consensus 424 ------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 424 ------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 567888999999999999999999999998886654
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.3e-18 Score=138.58 Aligned_cols=246 Identities=12% Similarity=0.098 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 94 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 94 (395)
..+.++...|..++-.|++-.|...|+.++.+.+ .....+..+|.+|....+..+....|.+|.++
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~--------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------ 389 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP--------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------ 389 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc--------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhc------
Confidence 3577888999999999999999999999998743 22334888999999999999999999999987
Q ss_pred CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
+|..+.+|+..|.+++-++++++|..-|++++.+ +|..+..+..++...+++++++++...|+.+...+.
T Consensus 390 --dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP 459 (606)
T KOG0547|consen 390 --DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP 459 (606)
T ss_pred --CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6777889999999999999999999999999987 677788899999999999999999999999988643
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHH-HHhhhcHHHHHHHHH
Q 016114 175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKNFVEAERLLR 253 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~ 253 (395)
. ...+++..|.++..++++++|++.|..++++-....+. +. .+..+.+.|.+ ..-.+++..|+.+++
T Consensus 460 ~----------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 460 N----------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred C----------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 2 24566778999999999999999999999985432110 00 11122222222 223489999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 304 (395)
+|+++ +|..-.++..||.+..++|+.++|+++|+++..+.+..
T Consensus 528 KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 528 KAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 99983 67777889999999999999999999999998877543
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=2.2e-17 Score=121.21 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
......+...+|.-|...|++..|...++++++. +|....++..++.+|...|+.+.|.+.|++|+.+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---- 98 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----
Confidence 3456778889999999999999999999999997 7888899999999999999999999999999987
Q ss_pred hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 214 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (395)
+|....+++|.|..++.+|++++|...|++|+. .|.-+....++.|+|.|..+.|+++.|..+|++++
T Consensus 99 ----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~--------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 99 ----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA--------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred ----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh--------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 677788999999999999999999999999987 35556667788999999999999999999999999
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 016114 215 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 294 (395)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 294 (395)
++ +|........++..+...|++..|..+++.... ..+..+..+.....+-...|+-+.+-++-
T Consensus 167 ~~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~--------~~~~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 167 EL--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQ--------RGGAQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred Hh--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh--------cccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 86 344455677899999999999999999887654 22345566666667777889988887776
Q ss_pred HHHHHH
Q 016114 295 LEALYI 300 (395)
Q Consensus 295 ~~al~~ 300 (395)
.+....
T Consensus 231 ~qL~r~ 236 (250)
T COG3063 231 AQLQRL 236 (250)
T ss_pred HHHHHh
Confidence 555443
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.82 E-value=1.4e-16 Score=136.56 Aligned_cols=319 Identities=15% Similarity=0.117 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
+.....-|......|+++.|...+.++.+.. |.....+...|.+....|+++.|..++.++.+.
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------- 147 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-------- 147 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 3334566778888999999999998876541 222334556789999999999999999998754
Q ss_pred Chhh-hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 97 SADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 97 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|.. ..+....+.++...|++++|...+++..+. .|....++..++.++...|++++|.+.+.+..+..
T Consensus 148 ~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-- 217 (409)
T TIGR00540 148 AGNDNILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-- 217 (409)
T ss_pred CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--
Confidence 1222 123444589999999999999999988876 34444678889999999999999999998887741
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
..++............-....+..+++.+.+..+...... ..+........++..+...|++++|.+.++++
T Consensus 218 ----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 218 ----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1222222222122222223334444445555555443211 11234567788999999999999999999999
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114 256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 335 (395)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 335 (395)
++.. ++++..... ..........++.+.+.+.++++++.. |++|. ...+..+|.++.+.|+++ +|.+
T Consensus 290 l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~~~~~~~-~A~~ 356 (409)
T TIGR00540 290 LKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLMKHGEFI-EAAD 356 (409)
T ss_pred HhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHHHcccHH-HHHH
Confidence 8831 222211101 112223344578888888888887643 45553 356789999999999999 9999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 336 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 336 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
+|+++..... +|+... +..+|.++.+.|+.++|..++++++...-..
T Consensus 357 ~le~a~a~~~------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 357 AFKNVAACKE------QLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHhHHhhc------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 9995433211 232222 4588999999999999999999998765443
No 48
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.82 E-value=1.5e-16 Score=135.26 Aligned_cols=339 Identities=13% Similarity=0.007 Sum_probs=233.5
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+|+.+..+..+|.++...|+++.+...+.++....... ..........+..+...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDD---- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence 57888889999999999999999988888877765432 223344556788999999999999999999876
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.|....++.. +..+...|++..+.....+++.. ..+.+|........+|.++...|++++|+..++++++.
T Consensus 73 ----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 73 ----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred ----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2333344443 55666666666665555555543 24567777788889999999999999999999999986
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 252 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 252 (395)
. |+. ..++..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|...+
T Consensus 144 ~-------p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 144 N-------PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred C-------CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3 333 345678999999999999999999999876421 11223456778999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCch
Q 016114 253 RICLDIMTKTVGPDDQSISFP--MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 330 (395)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (395)
++++... +..+..... ...+...+...|....+..+ +.+........ +.+. ....-...+.++...|+.+
T Consensus 210 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 210 DTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHG-LAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cccc-chHHHHHHHHHHhcCCCHH
Confidence 9985421 111111111 11223334445544433333 22222222211 1111 1122235778888899888
Q ss_pred hHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 331 TKLLELLKRVLRIQEREF-GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 331 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
+|...++.......... ..............+.++...|++++|...+..++.+...++.|
T Consensus 282 -~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 282 -ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred -HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 89999888877655410 01123345667778899999999999999999999999877654
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=6.4e-17 Score=143.88 Aligned_cols=253 Identities=14% Similarity=0.106 Sum_probs=192.1
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc---------CChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 73 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 73 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
+.+++|+..|++++++ +|....++..+|.++... +++++|...+++++++ +|...
T Consensus 275 ~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~ 338 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNP 338 (553)
T ss_pred HHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCH
Confidence 5678999999999876 566777888888877643 3478999999999886 45566
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
.++..+|.++...|++++|+..+++++++ .|++ ..++..+|.++...|++++|+..+++++++.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------ 402 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLL-------SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD------ 402 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 78889999999999999999999999986 3343 3456889999999999999999999999862
Q ss_pred CChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114 224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 224 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 303 (395)
|........++.++...|++++|+..+++++.. ..|.....+..+|.++...|++++|...+.+...
T Consensus 403 --P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---- 469 (553)
T PRK12370 403 --PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---- 469 (553)
T ss_pred --CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh----
Confidence 222233344555677789999999999998762 2355666788999999999999999999877543
Q ss_pred HcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114 304 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 383 (395)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 383 (395)
..|........++..+...| + +|...+++.++..... +.++ ..++.++.-.|+.+.+..+ +++.
T Consensus 470 ----~~~~~~~~~~~l~~~~~~~g--~-~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 470 ----QEITGLIAVNLLYAEYCQNS--E-RALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred ----ccchhHHHHHHHHHHHhccH--H-HHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHHHH-HHhh
Confidence 33444556777888888888 3 7888788866654431 2222 2267788888888888777 6665
Q ss_pred HHH
Q 016114 384 NLR 386 (395)
Q Consensus 384 ~~~ 386 (395)
+-+
T Consensus 534 ~~~ 536 (553)
T PRK12370 534 NED 536 (553)
T ss_pred ccc
Confidence 443
No 50
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=2.4e-17 Score=151.57 Aligned_cols=308 Identities=10% Similarity=0.029 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH-------------------------------HHHHHHHHHH
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------------------------------LLVTSLLGMA 66 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~~l~ 66 (395)
.+|+.+...|...|++++|+.+|+++..... .++.. ....++..+.
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 4577788888888999999999888764210 01100 0112345567
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114 67 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 146 (395)
Q Consensus 67 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 146 (395)
..|.+.|++++|...|++.. +....+|+.+...|...|++++|..+|.+.... + -.|+ ..++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~ 328 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTF 328 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHH
Confidence 77888888888888876531 123457788888888888888888888876542 1 1222 2356
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (395)
..+...+...|++++|...+..+++.. ..++ ..+++.+...|.+.|++++|...|++..+ +
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g-----~~~d----~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~ 389 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTG-----FPLD----IVANTALVDLYSKWGRMEDARNVFDRMPR----------K 389 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhC-----CCCC----eeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C
Confidence 666666777777777777766665431 1111 12234455566666666666655554321 1
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----
Q 016114 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR----- 301 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 301 (395)
...+|+.+...|...|+.++|.++|++.... .-.|+ ..++..+...+...|..++|.++|+...+..
T Consensus 390 -d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 390 -NLISWNALIAGYGNHGRGTKAVEMFERMIAE------GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred -CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 1234555555555555555555555554331 11111 2233334444444444444444444433211
Q ss_pred ------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114 302 ------------------------EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 357 (395)
Q Consensus 302 ------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 357 (395)
.+. +..|+ ..++..|...+...|+.+ .|...+++.+++ .|....
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~--~~~p~-~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~--------~p~~~~ 529 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRA--PFKPT-VNMWAALLTACRIHKNLE-LGRLAAEKLYGM--------GPEKLN 529 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHC--CCCCC-HHHHHHHHHHHHHcCCcH-HHHHHHHHHhCC--------CCCCCc
Confidence 000 11122 223555555566666665 555555554422 233345
Q ss_pred HHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114 358 TLKKVVSYLDKLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 385 (395)
.+..++.+|...|++++|.++++...+.
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 6778888999999999999988876543
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=5.4e-17 Score=129.78 Aligned_cols=204 Identities=16% Similarity=0.113 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
+.....+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|...+++++..
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 355778899999999999999999999999875 4556678889999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
.|.....+.++|.++...|++++|...+++++... ..+.....+.++|.++...|++++|...+.+++.
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23334578899999999999999999999998732 1122234567899999999999999999999987
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114 216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 295 (395)
.. |.....+..+|.++...|++++|...+++++.. .+.....+..++.++...|+.++|..+.+
T Consensus 164 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 ID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred hC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 52 233456788999999999999999999999874 13344556678899999999999998877
Q ss_pred HHHH
Q 016114 296 EALY 299 (395)
Q Consensus 296 ~al~ 299 (395)
....
T Consensus 228 ~~~~ 231 (234)
T TIGR02521 228 QLQK 231 (234)
T ss_pred HHHh
Confidence 6544
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=5.9e-17 Score=129.54 Aligned_cols=206 Identities=16% Similarity=0.136 Sum_probs=168.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
+.+..+..+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++..
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 94 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--- 94 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 34456788899999999999999999999999875 2344567888999999999999999999999886
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
.|.....+..+|.++...|++++|...+.+++... ..+.....+..+|.++...|++++|...+.+++.
T Consensus 95 -----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 -----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred -----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445688899999999999999999999998641 2344456788899999999999999999999988
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251 (395)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 251 (395)
.. ++. ...+..+|.++...|++++|..++++++... +. ....+..++.++...|+.++|..+
T Consensus 164 ~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 164 ID-------PQR---PESLLELAELYYLRGQYKDARAYLERYQQTY-----NQ---TAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred hC-------cCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHhhHHHHHHH
Confidence 52 222 3356789999999999999999999998761 12 234455778899999999999988
Q ss_pred HHHHHH
Q 016114 252 LRICLD 257 (395)
Q Consensus 252 ~~~a~~ 257 (395)
.+....
T Consensus 226 ~~~~~~ 231 (234)
T TIGR02521 226 GAQLQK 231 (234)
T ss_pred HHHHHh
Confidence 776544
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-16 Score=126.94 Aligned_cols=316 Identities=14% Similarity=0.139 Sum_probs=234.6
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
+.+..|.........+.++.....+..+..++-.-... -+.....+..+|.+++..|++.+|+..|+++..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~--------lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT--------LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc--------CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 34445554444445555554333333333333322221 2445667888999999999999999999998875
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 168 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 168 (395)
+|......-..|.++...|++++-..+-...+.+. ...+.-++.-+...+..+++..|+.+-++
T Consensus 262 --------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 262 --------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--------KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred --------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--------hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 67778888888999999999998877776666542 12333455567778889999999999999
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114 169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248 (395)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 248 (395)
+++.-. .+ ...+...|.++...|+.++|+-.|+.|..+. |....+|..|..+|...|++.+|
T Consensus 326 ~I~~~~-------r~---~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 326 CIDSEP-------RN---HEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HhccCc-------cc---chHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHH
Confidence 988532 11 3345678999999999999999999988763 56678899999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcchHHHHHHHH-HHHHh-cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114 249 ERLLRICLDIMTKTVGPDDQSISFPMLHLG-ITLYH-LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 326 (395)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (395)
.-..+.++..+ +..+.++..+| .++.. -.--++|.+++++++.+. |....+-..++.++...
T Consensus 388 ~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--------P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 388 NALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--------PIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--------CccHHHHHHHHHHHHhh
Confidence 99988888754 33455555564 33332 334578999999988753 66667778899999999
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 327 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 327 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
|.++ .++.++++.+..+.. ...+..||.++...+.+.+|+.+|..|+.+.|+.+.+
T Consensus 452 g~~~-D~i~LLe~~L~~~~D---------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 452 GPTK-DIIKLLEKHLIIFPD---------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred Cccc-hHHHHHHHHHhhccc---------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 9999 999999999976422 3567889999999999999999999999998876544
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=6e-17 Score=132.25 Aligned_cols=214 Identities=14% Similarity=0.105 Sum_probs=157.3
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114 5 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 84 (395)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (395)
++....-+++..+..++.+|.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+..|++
T Consensus 52 ~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 123 (296)
T PRK11189 52 ILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDS 123 (296)
T ss_pred HHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333334455667888999999999999999999999999986 234467889999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114 85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 164 (395)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 164 (395)
++++ .|....++.++|.++...|++++|+..+++++.. .++++.. ..+ ..+....+++++|+.
T Consensus 124 Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 124 VLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKE 186 (296)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHH
Confidence 9987 5667788999999999999999999999999986 3334421 111 223456789999999
Q ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc
Q 016114 165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244 (395)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 244 (395)
.+.++.... .++ .. ..+.+....|+..++ ..+..+.+..+... .-.+....+++++|.++...|+
T Consensus 187 ~l~~~~~~~------~~~--~~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 187 NLKQRYEKL------DKE--QW-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred HHHHHHhhC------Ccc--cc-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHCCC
Confidence 998766421 111 11 134555567777554 24444332211100 0124456789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 016114 245 FVEAERLLRICLDI 258 (395)
Q Consensus 245 ~~~A~~~~~~a~~~ 258 (395)
+++|+.+|++++..
T Consensus 252 ~~~A~~~~~~Al~~ 265 (296)
T PRK11189 252 LDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999973
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=9.3e-17 Score=117.95 Aligned_cols=203 Identities=20% Similarity=0.193 Sum_probs=168.3
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
.....+...||.-|...|++..|..-++++++. +|....++..+|.+|...|+.+.|.+.|++|+.+..
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--- 100 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP--- 100 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC---
Confidence 345677889999999999999999999999987 677788999999999999999999999999999642
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
+. ..+++|.|..++.+|++++|...|++|+.. +..+....++.|+|.|..+.|+++.|..+|+++++
T Consensus 101 ----~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 101 ----NN---GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred ----Cc---cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 22 556799999999999999999999999873 45667778999999999999999999999999998
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
+ +|........++..+...|++..|..++++..... +..+.++.....+-...|+.. .+-.+-
T Consensus 168 ~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~-~a~~Y~ 230 (250)
T COG3063 168 L--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRA-AAQRYQ 230 (250)
T ss_pred h--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHH-HHHHHH
Confidence 4 56666677899999999999999999988765422 244556666667777788776 555444
Q ss_pred HHHH
Q 016114 338 KRVL 341 (395)
Q Consensus 338 ~~al 341 (395)
.+..
T Consensus 231 ~qL~ 234 (250)
T COG3063 231 AQLQ 234 (250)
T ss_pred HHHH
Confidence 4433
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=8.4e-16 Score=118.46 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=211.7
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC--hhH
Q 016114 65 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRV 142 (395)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~ 142 (395)
-|.-+.-..+.++|+..|...++. +|...++...||.+|...|..+.|+...+..++. ++- ...
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr 106 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQR 106 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHH
Confidence 355566778899999999988874 6788899999999999999999999988776642 222 235
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 222 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (395)
..+...||.-|...|-++.|...|....+. +.....++..|..+|....+|++|++..++...+..+
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q--- 173 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE----------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ--- 173 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---
Confidence 567889999999999999999999987652 2333556788999999999999999998877665322
Q ss_pred CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114 223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 302 (395)
+.....+..+..++..+....+++.|...+.++++ .+|....+-..+|.+....|++..|++.++.+++
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq--------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--- 242 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQ--------ADKKCVRASIILGRVELAKGDYQKAVEALERVLE--- 242 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--------hCccceehhhhhhHHHHhccchHHHHHHHHHHHH---
Confidence 23456778888999999999999999999999998 3567777888999999999999999999998877
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHH
Q 016114 303 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 382 (395)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 382 (395)
.++..+..+...|..+|.+.|+.+ +...++.++.+.... + .....++..-....-.+.|..+..+-
T Consensus 243 ----Qn~~yl~evl~~L~~~Y~~lg~~~-~~~~fL~~~~~~~~g------~---~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 243 ----QNPEYLSEVLEMLYECYAQLGKPA-EGLNFLRRAMETNTG------A---DAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred ----hChHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHccCC------c---cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 455567788889999999999999 999999998875321 1 22333444444455556666665555
Q ss_pred HHHHHH
Q 016114 383 SNLRMK 388 (395)
Q Consensus 383 ~~~~~~ 388 (395)
+.-.|.
T Consensus 309 l~r~Pt 314 (389)
T COG2956 309 LRRKPT 314 (389)
T ss_pred HhhCCc
Confidence 544433
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=3.8e-16 Score=127.58 Aligned_cols=228 Identities=14% Similarity=0.036 Sum_probs=165.8
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114 29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 108 (395)
Q Consensus 29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 108 (395)
..+..+.++..+.+++...+ .+++..+..++.+|.++...|++++|+..|++++++ .|....+++.+|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg 105 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLG 105 (296)
T ss_pred CchHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHH
Confidence 34566778888888775321 233466788999999999999999999999999986 567788999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Q 016114 109 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 188 (395)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (395)
.++...|++++|+..|++++++ +|....++.++|.++...|++++|+..++++++. .|+++.. .
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~~~~~-~ 169 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPNDPYR-A 169 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH-H
Confidence 9999999999999999999987 4555678999999999999999999999999985 3444421 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114 189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 268 (395)
Q Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 268 (395)
. ...+....+++++|+..+.++.... ++.. + ..+.+....|+..++ ..++.+........ ...+
T Consensus 170 ~---~~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~ 233 (296)
T PRK11189 170 L---WLYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAE 233 (296)
T ss_pred H---HHHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHH
Confidence 1 1223456788999999998765321 1111 1 123444455665443 23333332111000 0123
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
....++.++|.++...|++++|+.+|+++++.
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999974
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=6.7e-16 Score=134.35 Aligned_cols=328 Identities=19% Similarity=0.169 Sum_probs=230.9
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114 8 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 87 (395)
Q Consensus 8 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 87 (395)
.+-..+|....+|+.||.+|..+|+.+++...+-.|-.+ .+.++ ..|..++.....+|++.+|.-+|.+|+.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 333456888889999999999999999999988777654 23232 5688889999999999999999999998
Q ss_pred HHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHH
Q 016114 88 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELY 166 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~ 166 (395)
. .|......+..+.+|.++|+...|...|.+.+.... +.+.. ........+..+...++-+.|++.+
T Consensus 236 ~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 236 A--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP----PVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred c--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7 455677888899999999999999999999988742 11112 2333445577777888888888888
Q ss_pred HHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------------HH-------
Q 016114 167 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL----------------------IT------- 217 (395)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------~~------- 217 (395)
+.++...... ... ..++.++.++.....++.|......-.. +.
T Consensus 304 e~~~s~~~~~----~~~----ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 304 EGALSKEKDE----ASL----EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHhhcccc----ccc----cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 8887732111 111 1123455555555555555554433222 00
Q ss_pred ---------------------------HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch
Q 016114 218 ---------------------------EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 270 (395)
Q Consensus 218 ---------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 270 (395)
.........+....+..++..+...|++.+|+.++..+.. ......
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-------~~~~~~ 448 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-------REGYQN 448 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-------Cccccc
Confidence 0000001234456678899999999999999999988765 223344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-HhccC
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ-EREFG 349 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~ 349 (395)
...|..+|.||..+|.+++|+++|++++... |+...+...|+.++..+|+++ +|.+.++....-- +..-+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------p~~~D~Ri~Lasl~~~~g~~E-kalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA--------PDNLDARITLASLYQQLGNHE-KALETLEQIINPDGRNAEA 519 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCchhhhhhHHHHHHhcCCHH-HHHHHHhcccCCCccchhh
Confidence 6789999999999999999999999999854 444557889999999999999 8887776643100 00000
Q ss_pred CCCHHHHHHHHHHHHHHHHhcchhhhchhh
Q 016114 350 SESEEVMLTLKKVVSYLDKLGRKEEKFPLK 379 (395)
Q Consensus 350 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 379 (395)
...+...........++...|+.++=+..-
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 112334566788899999999998844433
No 59
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.79 E-value=5e-15 Score=141.38 Aligned_cols=312 Identities=11% Similarity=0.029 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
...+...+|.++...|++++|..++++++.... ..+......+...+|.++...|++++|...+++++.......
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-- 525 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-- 525 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--
Confidence 344556678899999999999999999987522 122223455677899999999999999999999999877643
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.......++..+|.++...|++++|...+.+++.+.....+...+.....+..+|.++...|++++|...+.+++.+...
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 22334557788999999999999999999999999877643333444455678899999999999999999999998764
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH-HHHHHHHhhhcHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL-NLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~la~~~~~~~~~~~A~~~~~~ 254 (395)
. + +.....++..++.++...|++++|...+.++..+..... .......... .....+...|+.+.|..++..
T Consensus 606 ~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 678 (903)
T PRK04841 606 Y---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--YHSDWIANADKVRLIYWQMTGDKEAAANWLRQ 678 (903)
T ss_pred c---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 2 1 223345667899999999999999999999988754421 1111111111 122445567888998888665
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 334 (395)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 334 (395)
.... .. ............++.++...|++++|...+++++...... ........++..+|.++...|+.+ +|.
T Consensus 679 ~~~~---~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~~~~~a~~~~~la~a~~~~G~~~-~A~ 751 (903)
T PRK04841 679 APKP---EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RLMSDLNRNLILLNQLYWQQGRKS-EAQ 751 (903)
T ss_pred cCCC---CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHcCCHH-HHH
Confidence 4320 00 0111122235678999999999999999999999986553 233466778889999999999999 999
Q ss_pred HHHHHHHHHHHh
Q 016114 335 ELLKRVLRIQER 346 (395)
Q Consensus 335 ~~~~~al~~~~~ 346 (395)
..+.+++++...
T Consensus 752 ~~L~~Al~la~~ 763 (903)
T PRK04841 752 RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHhCc
Confidence 999999998755
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=2.6e-15 Score=128.18 Aligned_cols=304 Identities=12% Similarity=0.081 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
+...+.-|......|+|++|.....++-+. .+.|.. .+...+......|+++.|..++.++.+.
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~-------- 147 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAEL-------- 147 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 344456777778889999999766654332 122222 2344466668999999999999999764
Q ss_pred Chhh-hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 97 SADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 97 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|+. .......+.++...|++++|...+++..+. .|....++..++.+|...|++++|...+.+..+...
T Consensus 148 ~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~- 218 (398)
T PRK10747 148 ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV- 218 (398)
T ss_pred CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-
Confidence 2222 223334489999999999999999998875 344456778889999999999999999998876421
Q ss_pred cccCCCCchHHH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114 176 SNYMSLDDSIME----NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251 (395)
Q Consensus 176 ~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 251 (395)
.++.... .++..+........+ .+.+.+..+...+ ..+........++..+...|+.++|...
T Consensus 219 -----~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~----~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 219 -----GDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSR----KTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCH----HHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1222222 122222211112222 2223222222111 1233456677899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114 252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 331 (395)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (395)
++++++. +.++... ...+ ....++.+++++..++.++. +|+....+..+|.++...++++
T Consensus 286 L~~~l~~------~~~~~l~---~l~~--~l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~- 345 (398)
T PRK10747 286 ILDGLKR------QYDERLV---LLIP--RLKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQ- 345 (398)
T ss_pred HHHHHhc------CCCHHHH---HHHh--hccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHH-
Confidence 9988761 2233222 1222 23458999999888887753 3455557889999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 332 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 332 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
+|.++|+++++. .|+. ..+..++.++..+|+.++|..+|++++.+..
T Consensus 346 ~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 346 EASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 999999999975 2322 3456799999999999999999999987653
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.77 E-value=4.6e-15 Score=116.27 Aligned_cols=308 Identities=16% Similarity=0.093 Sum_probs=236.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC-
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES- 97 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 97 (395)
.+-.+..+...+|.|++++.+--..++..... .+......++.+++..+....++.+++.+....+.+- +...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~ 118 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAG 118 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcc
Confidence 34455667778889988888777666666553 3445677889999999999999999998887776642 2111
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
..-......+|..+..++.|+++++.|+.|+.+..... +......++..||.++....++++|..+..+|.++.+...
T Consensus 119 ~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 119 QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 22235666789999999999999999999999976641 2223456788999999999999999999999999987753
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
..+-+......+++.++..+..+|+.-.|.++.+++.++.-... +.+.....+..+|.+|...|+.+.|..-|++|+.
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 22333444566778899999999999999999999999987765 5677788899999999999999999999999998
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114 258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332 (395)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (395)
+.... .+......++...+.++....-..+ |++.-++.+++..++ .....+......++.+|..+|..+ +
T Consensus 275 ~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I--G~K~~vlK~hcrla~iYrs~gl~d-~ 349 (518)
T KOG1941|consen 275 TMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI--GAKLSVLKLHCRLASIYRSKGLQD-E 349 (518)
T ss_pred HHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccchh-H
Confidence 77665 3444556677777777766544444 999999999998776 344556778888999999998766 5
Q ss_pred HHHHHHHHH
Q 016114 333 LLELLKRVL 341 (395)
Q Consensus 333 A~~~~~~al 341 (395)
-...+.++-
T Consensus 350 ~~~h~~ra~ 358 (518)
T KOG1941|consen 350 LRAHVVRAH 358 (518)
T ss_pred HHHHHHHHH
Confidence 555555443
No 62
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.77 E-value=1.5e-16 Score=146.41 Aligned_cols=299 Identities=13% Similarity=0.087 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
..+++.+...|...|++++|..+|++..+ | ...+++.+...|...|++++|+..|++....- ..++
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~ 223 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPE----------R-NLASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAE 223 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----------C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCC
Confidence 34566777888888888888888876532 1 13457788889999999999999999876421 0000
Q ss_pred -------------------------------ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114 97 -------------------------------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145 (395)
Q Consensus 97 -------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 145 (395)
......+++.+...|.+.|++++|...|++.. +....+
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt 292 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTTVA 292 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCChhH
Confidence 01122345667888999999999998887642 123457
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 225 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (395)
|+.+...|...|++++|..+|++..+.. ..++. .++..+...+...|++++|...+...++. ..
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g-----~~pd~----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~ 356 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSG-----VSIDQ----FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GF 356 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCH----HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CC
Confidence 8899999999999999999999876521 22232 35677888999999999999999887764 11
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 305 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 305 (395)
+....+++.+...|.+.|++++|...|++..+ + ...+|..+...|...|+.++|.++|++..+.-
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---- 421 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG---- 421 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 22345677899999999999999999987532 2 23578899999999999999999999876521
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHH
Q 016114 306 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 381 (395)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 381 (395)
-.|+ ..++..+...+.+.|..+ +|..+|+...+.. + ..|+ ...+..+..+|.+.|++++|.+++++
T Consensus 422 --~~Pd-~~T~~~ll~a~~~~g~~~-~a~~~f~~m~~~~----g-~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 422 --VAPN-HVTFLAVLSACRYSGLSE-QGWEIFQSMSENH----R-IKPR-AMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred --CCCC-HHHHHHHHHHHhcCCcHH-HHHHHHHHHHHhc----C-CCCC-ccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 1222 334666777778888887 7888777765421 1 1111 23455666666667777776666554
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2.8e-15 Score=136.31 Aligned_cols=183 Identities=12% Similarity=-0.069 Sum_probs=138.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH-Hh--h----
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT-KT--V---- 263 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~--~---- 263 (395)
...|..|...+++++|+.+|..++.-..... ..+........|...|...+++++|..++++..+... .. .
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 4578888888888888888887765321100 1122233345678889999999999999998876211 00 1
Q ss_pred CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
...+|+.......++.++...|++.+|++.+++.+... |........+|.++...|.+. +|...++.+..+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~p~-~A~~~~k~a~~l 479 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDLPR-KAEQELKAVESL 479 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhh
Confidence 12456777888899999999999999999999987644 444456789999999999999 999999777653
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 344 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
+|+...+....+.++..+|++.+|......+++..|+...+
T Consensus 480 --------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 480 --------APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred --------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 45567788899999999999999999999888877766544
No 64
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.4e-15 Score=120.68 Aligned_cols=242 Identities=14% Similarity=0.068 Sum_probs=190.5
Q ss_pred hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC
Q 016114 103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 182 (395)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 182 (395)
..-.+|.......++..|+..|..++++. .....+.+.+.+|...|.+.+.+.....+++..... ..+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~---rad 293 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL---RAD 293 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH---HHH
Confidence 45578888899999999999999999883 334567889999999999999999999988865542 223
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--hh----------------CCCChhHHHHHHHHHHHHHhhhc
Q 016114 183 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK--YK----------------GKEHPSFVTHLLNLAASYSRSKN 244 (395)
Q Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~~~ 244 (395)
...++.+...+|..|...++++.|+.+|++++.-.+. .. .-..|....-...-|..+...|+
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence 3445666667888999999999999999998765432 00 00133344444556889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 016114 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT 324 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (395)
|..|+..|.+++. ..|.....|.+.|.||..+|.+..|+...+.++++ +|.....+..-|.++.
T Consensus 374 y~~Av~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 374 YPEAVKHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHH
Confidence 9999999999987 35888999999999999999999999999999875 4777888999999999
Q ss_pred HcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHH
Q 016114 325 RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 381 (395)
Q Consensus 325 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 381 (395)
.+.+++ +|.+.|+++++. +|....+...+.+++..+.......+..++
T Consensus 438 ~mk~yd-kAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 438 AMKEYD-KALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHH-HHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999 999999999964 466777777888888765444444444444
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=7.3e-15 Score=133.65 Aligned_cols=333 Identities=9% Similarity=0.016 Sum_probs=205.7
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
.|..+...+..+.+....|+++.|+..|+++++.. +.++. ....+..++...|+.++|+.++++++.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~---av~dll~l~~~~G~~~~A~~~~eka~~----- 96 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSG---QVDDWLQIAGWAGRDQEVIDVYERYQS----- 96 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchh---hHHHHHHHHHHcCCcHHHHHHHHHhcc-----
Confidence 44555667888899999999999999999998763 22211 111556666677888888888887761
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
..+.....+..+|.++...|++++|++.|+++++. +|....++..++.++...++.++|+..++++...
T Consensus 97 ---p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 97 ---SMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 12333344555577888888888888888888765 2332344556677777777777777777776553
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----------------------------------
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE---------------------------------- 218 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------------------------- 218 (395)
. +. ...+..++.++...++..+|+..++++++...
T Consensus 166 d-------p~----~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~ 234 (822)
T PRK14574 166 D-------PT----VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS 234 (822)
T ss_pred C-------cc----hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC
Confidence 1 11 11112234444444555456666655544311
Q ss_pred -----------------------------------------hhhC------CCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114 219 -----------------------------------------KYKG------KEHPSFVTHLLNLAASYSRSKNFVEAERL 251 (395)
Q Consensus 219 -----------------------------------------~~~~------~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 251 (395)
.... +.++....+..-.-.++...|++.+++..
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~ 314 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKE 314 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1000 00111112222222334444555555555
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114 252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 331 (395)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (395)
|+.... ...+.-..+....|..|...+++++|+.+|++++.-..... ..+........|...+...++++
T Consensus 315 y~~l~~-------~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~- 384 (822)
T PRK14574 315 YEAMEA-------EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLD- 384 (822)
T ss_pred HHHhhh-------cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHH-
Confidence 554332 22222234567789999999999999999998866331110 11222233457888899999999
Q ss_pred HHHHHHHHHHHHHH-hc--c----CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 332 KLLELLKRVLRIQE-RE--F----GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 332 ~A~~~~~~al~~~~-~~--~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
+|..++++..+... .. + ...+|+.......++.++...|++.+|.+.+++.+...|...
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999876322 00 1 134677778888889999999999999999999887766543
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-14 Score=123.48 Aligned_cols=331 Identities=19% Similarity=0.147 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh----Cc-------hhHHHHHHH
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GR-------AKKAVEIYH 83 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~ 83 (395)
+....+..-..+....+..++++++..++++..... .......++..+|.+|..+ .. ..+++..++
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 333434444455667899999999999999976332 2334456677777777543 22 334445555
Q ss_pred HHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 016114 84 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163 (395)
Q Consensus 84 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 163 (395)
++++. +|....+.+.++.-|..+++.+.|..+..+++++ +..+.+.++..++.++...+++.+|+
T Consensus 469 ~av~~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-------~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 469 EAVQF--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-------NRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHhc--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-------cCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 55443 3334478889999999999999999999999987 23345678899999999999999999
Q ss_pred HHHHHHHHHHHhcccCC----------CCchH-HHHHHHHH----------------------HHHHHHcCChHHHHHHH
Q 016114 164 ELYKKALRVIKDSNYMS----------LDDSI-MENMRIDL----------------------AELLHIVGRGQEGRELL 210 (395)
Q Consensus 164 ~~~~~a~~~~~~~~~~~----------~~~~~-~~~~~~~l----------------------a~~~~~~g~~~~A~~~~ 210 (395)
...+.+++-...+...- .+... +..+...+ +......++..+|....
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 99999988654320000 00000 00000000 00111122334444444
Q ss_pred HHHHHHHHhhh----------------CCCCh--hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH
Q 016114 211 EECLLITEKYK----------------GKEHP--SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 272 (395)
Q Consensus 211 ~~al~~~~~~~----------------~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 272 (395)
.++........ +++++ .....+...+..+...++.++|..++.++-.+ .|....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~ 685 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSAS 685 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHH
Confidence 44444332110 11111 11234556678888889999999888888764 467788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH--HHHHHHHHHHhccCC
Q 016114 273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE--LLKRVLRIQEREFGS 350 (395)
Q Consensus 273 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~al~~~~~~~~~ 350 (395)
.++..|.++..+|++.+|...|..++.+. |+|+. +...+|.++...|+.. -|.. ++..++++
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ld-----P~hv~---s~~Ala~~lle~G~~~-la~~~~~L~dalr~------- 749 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALALD-----PDHVP---SMTALAELLLELGSPR-LAEKRSLLSDALRL------- 749 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhcC-----CCCcH---HHHHHHHHHHHhCCcc-hHHHHHHHHHHHhh-------
Confidence 89999999999999999999999998854 66654 5778999999999877 6766 88888875
Q ss_pred CCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 351 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 351 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
+|...++|+.+|.++..+|+.++|.++|.-++++.+.
T Consensus 750 -dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 750 -DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred -CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 4555689999999999999999999999999988664
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=3.8e-16 Score=129.55 Aligned_cols=266 Identities=15% Similarity=0.161 Sum_probs=194.7
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 100 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (395)
+..|..+++.|+..+|.-.|+.++.- +|..+++|..||.+....++-..|+..+++++++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 46788899999999999999999873 5788999999999999999999999999999997 7888
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh--CCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--GEND-GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
..++..||..|...|.-.+|..++.+-+....+-. .... ..... ...-......+..-.+.|-.+... .
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~---~- 424 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQ---L- 424 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHh---C-
Confidence 89999999999999999999999998876421100 0000 00000 000000000111122223332221 1
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
....+ ..++..||.+|...|+|++|+++|+.|+.. .|.....|+.||-.+....+.++|+..|++|++
T Consensus 425 -~~~~D---pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 425 -PTKID---PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred -CCCCC---hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 11122 345577999999999999999999999984 577788999999999999999999999999998
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHHcCCch
Q 016114 258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP--VGEALDCLVSIQTRLGEDD 330 (395)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 330 (395)
+ .|...++.++||..+..+|.|++|.++|-.|+.+.....+..... .-.++..|-.++...++.+
T Consensus 493 L--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 493 L--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred c--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 5 588889999999999999999999999999999987643322211 1123444445555555554
No 68
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.74 E-value=1.7e-14 Score=112.37 Aligned_cols=283 Identities=16% Similarity=0.131 Sum_probs=215.8
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
+.+|....+++..|.+|+..|+..-|+.-+.+++++ .|+...+....|.++..+|++++|+.-|..++..-
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~- 136 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE- 136 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-
Confidence 457888888999999999999999999999999986 36677788889999999999999999999988741
Q ss_pred HhcCCCChhh------------hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC
Q 016114 91 LNRGTESADL------------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 158 (395)
Q Consensus 91 ~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 158 (395)
++.... ...+......+...|+...|+.+....+++ .|..+..+...+.+|...|+
T Consensus 137 ----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 137 ----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred ----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCc
Confidence 111111 122333445566789999999999998887 57777788889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH---
Q 016114 159 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL--- 235 (395)
Q Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--- 235 (395)
+..|+.-++.+-++.. ++ ...++.++.+++..|+.+.++...++++++ .++|......|..+
T Consensus 205 ~k~AI~Dlk~askLs~-------Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQ-------DN---TEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHHHHHhccc-------cc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHH
Confidence 9999999998877542 22 345578999999999999999999999886 33443333333322
Q ss_pred ------HHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114 236 ------AASYSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 308 (395)
Q Consensus 236 ------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 308 (395)
+.-....++|.++++-.++.+.. .+. .+........+..|+..-|++.+|+..+.+++++.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~-----ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d------- 337 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKN-----EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID------- 337 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc-----CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-------
Confidence 23334556666666666666551 111 22334455667889999999999999999888743
Q ss_pred ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 309 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
|+...++..-+.+|.....++ .|+.-|++|.++
T Consensus 338 -~~dv~~l~dRAeA~l~dE~YD-~AI~dye~A~e~ 370 (504)
T KOG0624|consen 338 -PDDVQVLCDRAEAYLGDEMYD-DAIHDYEKALEL 370 (504)
T ss_pred -chHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHhc
Confidence 666788999999999999999 999999999875
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.4e-15 Score=116.76 Aligned_cols=270 Identities=14% Similarity=0.085 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|.....+..+|.+++..|++++|+..|+++..+ +|..+..+-..|..+...|+++.-...-...+.+.+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--- 297 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--- 297 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence 455667788999999999999999999998765 577888888889999999999988877776666522
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
....-++--+...+...++..|+.+-+++++. ++....++..-|.++...|+.++|+-.|+.|..+.
T Consensus 298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 22333445567778889999999999999976 34445678888999999999999999999998764
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH-HHHH-hhhcHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA-ASYS-RSKNFVEAERL 251 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~ 251 (395)
|....+|..|-.+|...|++.+|....+.++... +..+.++..+| .++. .-.--++|..+
T Consensus 365 ----------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 365 ----------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred ----------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHH
Confidence 2336788899999999999999999999988765 33445555554 3332 23334789999
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114 252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 331 (395)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (395)
+++++.+ .|....+...+|.++...|.+..++.++++.+..+ ++. .....||.++...+.++
T Consensus 427 ~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-----~D~----~LH~~Lgd~~~A~Ne~Q- 488 (564)
T KOG1174|consen 427 AEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-----PDV----NLHNHLGDIMRAQNEPQ- 488 (564)
T ss_pred HHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-----ccc----HHHHHHHHHHHHhhhHH-
Confidence 9999873 67788888999999999999999999999999865 221 34678999999999999
Q ss_pred HHHHHHHHHHHH
Q 016114 332 KLLELLKRVLRI 343 (395)
Q Consensus 332 ~A~~~~~~al~~ 343 (395)
+|.++|..|+.+
T Consensus 489 ~am~~y~~ALr~ 500 (564)
T KOG1174|consen 489 KAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 70
>PLN03077 Protein ECB2; Provisional
Probab=99.72 E-value=1.3e-14 Score=137.02 Aligned_cols=163 Identities=11% Similarity=0.031 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc
Q 016114 190 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 269 (395)
Q Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 269 (395)
|+.+...|...|+.++|+.+|++..+. | -.|+ ..++..+...+.+.|++++|..+|+...+.. +-.|.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~ 624 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVES-----G-VNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN 624 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc
Confidence 344555555555555555555544321 0 0111 1223333344555555555555555544211 11122
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114 270 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 349 (395)
Q Consensus 270 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 349 (395)
...+..+..++.+.|++++|.+.+++. +..|+ ..+|..|-..+...|+.+ .+....++.+++
T Consensus 625 -~~~y~~lv~~l~r~G~~~eA~~~~~~m---------~~~pd-~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l------ 686 (857)
T PLN03077 625 -LKHYACVVDLLGRAGKLTEAYNFINKM---------PITPD-PAVWGALLNACRIHRHVE-LGELAAQHIFEL------ 686 (857)
T ss_pred -hHHHHHHHHHHHhCCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCChH-HHHHHHHHHHhh------
Confidence 234455555555555555555555432 01111 123334444444455554 454444444432
Q ss_pred CCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114 350 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 384 (395)
Q Consensus 350 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 384 (395)
.|+....+..++.+|...|++++|.+..+...+
T Consensus 687 --~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 687 --DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred --CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 233345677888999999999998888776654
No 71
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.5e-14 Score=124.14 Aligned_cols=282 Identities=11% Similarity=0.036 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
...+...|.+...+|+++.|..++.++.+.. ++.. ..+....+.++...|++++|...+++.++.
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 3445577899999999999999999987642 1111 122334588999999999999999988875
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|....++..++.++...|++++|.+.+.+..+.. ..++... ........-....+..+++...+.++.....
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p- 256 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP- 256 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC-
Confidence 46666788899999999999999999998887651 1223222 1222222222333444444555555554321
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
...+.....+..++..+...|++++|.+.++++++.. ++++..... ..........++.+.+.+.++++
T Consensus 257 -----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 257 -----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred -----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence 1111124456778999999999999999999998853 122211101 11223334457888888888887
Q ss_pred HHHHHHhhCCCCcchH--HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH
Q 016114 256 LDIMTKTVGPDDQSIS--FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL 333 (395)
Q Consensus 256 ~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 333 (395)
++ .+|+.. ..+..+|.++...|++++|.++|+++.... ..|+... +..+|.++.+.|+.+ +|
T Consensus 326 lk--------~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~-~A 389 (409)
T TIGR00540 326 AK--------NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK------EQLDAND-LAMAADAFDQAGDKA-EA 389 (409)
T ss_pred HH--------hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHH-HH
Confidence 76 244445 678899999999999999999999543322 1133222 458999999999999 99
Q ss_pred HHHHHHHHHHHHh
Q 016114 334 LELLKRVLRIQER 346 (395)
Q Consensus 334 ~~~~~~al~~~~~ 346 (395)
.+++++++...-.
T Consensus 390 ~~~~~~~l~~~~~ 402 (409)
T TIGR00540 390 AAMRQDSLGLMLA 402 (409)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876543
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.8e-15 Score=125.60 Aligned_cols=269 Identities=16% Similarity=0.059 Sum_probs=194.0
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
..|..+++.|+..+|.-.|+.++.- +|..+.+|..||.+....++-..|+..+++++++ +|...
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nl 353 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNL 353 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccH
Confidence 3577888899999999999988764 7888999999999999999999999999999987 67777
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 222 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (395)
.++..||..|...|.-.+|..++.+-+....+....... ...... ...-......+..-.++|-.+.. ....
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~---~~~~ 426 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAAR---QLPT 426 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHH---hCCC
Confidence 889999999999999999999998876642110000000 000000 00000000001111222222221 1111
Q ss_pred CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114 223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 302 (395)
.....+...||.+|...|+|++|+++|+.|+. ..|.....|..||..+....+.++|+..|.+|+++.
T Consensus 427 ---~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq- 494 (579)
T KOG1125|consen 427 ---KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ- 494 (579)
T ss_pred ---CCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-
Confidence 13345677899999999999999999999998 467888899999999999999999999999999976
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH--HHHHHHHHHHHHHHhcchhhh
Q 016114 303 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE--VMLTLKKVVSYLDKLGRKEEK 375 (395)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A 375 (395)
|...++.++||..+..+|.+. +|..+|-.|+.+.++........ .-.++..|-.++..+++.+-+
T Consensus 495 -------P~yVR~RyNlgIS~mNlG~yk-EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 495 -------PGYVRVRYNLGISCMNLGAYK-EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred -------CCeeeeehhhhhhhhhhhhHH-HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 677788999999999999999 99999999999987733222110 123455555677777777633
No 73
>PLN03077 Protein ECB2; Provisional
Probab=99.71 E-value=3.4e-14 Score=134.09 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC-
Q 016114 189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD- 267 (395)
Q Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~- 267 (395)
+++.+...|.+.|++++|.+.|++..+ + ...+|+.+...|...|++++|+.+|++.... ..++.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~ 490 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----------K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSV 490 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHh
Confidence 345666777777777777777765321 1 1235677778888888888888888776521 00110
Q ss_pred ------------------------------------------------------------cchHHHHHHHHHHHHhcCCh
Q 016114 268 ------------------------------------------------------------QSISFPMLHLGITLYHLNRD 287 (395)
Q Consensus 268 ------------------------------------------------------------~~~~~~~~~la~~~~~~g~~ 287 (395)
.....+|..+...|...|+.
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCH
Confidence 11123455666667777777
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 016114 288 KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD 367 (395)
Q Consensus 288 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 367 (395)
++|+++|++..+.- ..|+ ..++..+-..+.+.|..+ +|..+|+...+.+ ...|+ ...+..+..++.
T Consensus 571 ~~A~~lf~~M~~~g---~~Pd----~~T~~~ll~a~~~~g~v~-ea~~~f~~M~~~~-----gi~P~-~~~y~~lv~~l~ 636 (857)
T PLN03077 571 SMAVELFNRMVESG---VNPD----EVTFISLLCACSRSGMVT-QGLEYFHSMEEKY-----SITPN-LKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHHHcC---CCCC----cccHHHHHHHHhhcChHH-HHHHHHHHHHHHh-----CCCCc-hHHHHHHHHHHH
Confidence 77777777655321 1122 223555666777888888 8888887766332 11232 367788899999
Q ss_pred HhcchhhhchhhHHH
Q 016114 368 KLGRKEEKFPLKKRL 382 (395)
Q Consensus 368 ~~g~~~~A~~~~~~a 382 (395)
+.|++++|.+++++.
T Consensus 637 r~G~~~eA~~~~~~m 651 (857)
T PLN03077 637 RAGKLTEAYNFINKM 651 (857)
T ss_pred hCCCHHHHHHHHHHC
Confidence 999999999988875
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.9e-15 Score=118.59 Aligned_cols=293 Identities=13% Similarity=0.053 Sum_probs=223.7
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
....+.-....|..++...+|.+|+..+..|++++ |..+..|.+.+.++...|+|++|....++.+++
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~---- 112 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL---- 112 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheec----
Confidence 34456667889999999999999999999999985 333677888999999999999999999888776
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH--------HHHHHHhCC--CChhHHHHHHHHHHHHHHCCCHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL--------KIYTKVYGE--NDGRVGMAMCSLAHAKCANGNAEEA 162 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A 162 (395)
.+.........+.++...++..+|...++..- ...+++... ..|....+...-+.++...|++++|
T Consensus 113 ----kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 113 ----KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred ----CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 44555577777888888888887776665221 111111111 1244555566678899999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC----CCChhHHHHHHHHHHH
Q 016114 163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAAS 238 (395)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~ 238 (395)
...--..+++. +.-..++...|.++...++.+.|+..|++++.+...... ...+.....+..-|.-
T Consensus 189 ~~ea~~ilkld----------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 189 QSEAIDILKLD----------ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred HHHHHHHHhcc----------cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 88776666642 122445566788999999999999999999986432210 0123445556677888
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 016114 239 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC 318 (395)
Q Consensus 239 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 318 (395)
..+.|++.+|.+.|..++.+-. .+....+..|.+.+.+..+.|+..+|+.-.+.++.+. +....++..
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP----~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syikall~ 326 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDP----SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIKALLR 326 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCc----cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHHHHHH
Confidence 8999999999999999998521 1233567789999999999999999999999998864 667888999
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114 319 LVSIQTRLGEDDTKLLELLKRVLRIQ 344 (395)
Q Consensus 319 l~~~~~~~~~~~~~A~~~~~~al~~~ 344 (395)
-|.++...++++ +|.+.|+++++.-
T Consensus 327 ra~c~l~le~~e-~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 327 RANCHLALEKWE-EAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence 999999999999 9999999999754
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=6.2e-14 Score=119.27 Aligned_cols=298 Identities=15% Similarity=0.054 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
........+..+...|++++|...++++++.. ++++ .++.. +..+...|++..+.....+++.. ..+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~ 108 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDY-----PRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAP 108 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCc
Confidence 34445667888999999999999999998752 2222 23332 55566666665555555555543 234
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.+|........+|.++...|++++|+..+++++++ .|.....+..+|.++...|++++|+.++++++....
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~- 179 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD- 179 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC-
Confidence 67777788889999999999999999999999987 233356788899999999999999999999987532
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH--HHHHHHHhhhcHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL--NLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~~~~~~A~~~~~ 253 (395)
.++......+..+|.++...|++++|+..+++++... +..+....... .+...+...|....+..+ +
T Consensus 180 -----~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~ 248 (355)
T cd05804 180 -----CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-E 248 (355)
T ss_pred -----CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-H
Confidence 1223334556789999999999999999999985431 11111111101 222223333432222222 2
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF-GKDSLPVGEALDCLVSIQTRLGEDDTK 332 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (395)
.+........ +. +.....-...+.++...|+.++|...++.......... ..............+.++...|++. +
T Consensus 249 ~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~-~ 325 (355)
T cd05804 249 DLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA-T 325 (355)
T ss_pred HHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH-H
Confidence 2222111110 11 22222334678888999999999999988877665410 0112234455677888999999999 9
Q ss_pred HHHHHHHHHHHHHhccC
Q 016114 333 LLELLKRVLRIQEREFG 349 (395)
Q Consensus 333 A~~~~~~al~~~~~~~~ 349 (395)
|.+.+..++.....+-|
T Consensus 326 A~~~L~~al~~a~~~gg 342 (355)
T cd05804 326 ALELLGPVRDDLARIGG 342 (355)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999998866533
No 76
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=1.8e-13 Score=117.00 Aligned_cols=266 Identities=13% Similarity=0.090 Sum_probs=185.9
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 100 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (395)
...+......|+++.|..++.++.+.. ++. ... .....+.++...|++++|...+++..+. .|..
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~ 186 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAELA-----DND-QLP-VEITRVRIQLARNENHAARHGVDKLLEV--------APRH 186 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-hHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCC
Confidence 344666699999999999999997642 111 112 2233488999999999999999998775 5666
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM-----AMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
..++..++.+|...|++++|...+.+..+.. ..++.... ++..+........+- ..+.+..+...+
T Consensus 187 ~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~l~~~~~~~~~~----~~l~~~w~~lp~ 257 (398)
T PRK10747 187 PEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----VGDEEHRAMLEQQAWIGLMDQAMADQGS----EGLKRWWKNQSR 257 (398)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHhCCH
Confidence 7888899999999999999999998877642 11222111 222222212222222 223332222111
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
..++. ..+...++..+...|+.++|...++++++. +.++..... .+ ....++++++....++.
T Consensus 258 ---~~~~~---~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l---~~--~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 258 ---KTRHQ---VALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLL---IP--RLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred ---HHhCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH---Hh--hccCCChHHHHHHHHHH
Confidence 01222 344577899999999999999999988762 123332222 22 23458999999988887
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114 256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 335 (395)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 335 (395)
++ .+|+....+..+|.++...|++++|.++|+++++.. |+. ..+..++.++.+.|+.+ +|..
T Consensus 321 lk--------~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~-~A~~ 382 (398)
T PRK10747 321 IK--------QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPE-EAAA 382 (398)
T ss_pred Hh--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHH-HHHH
Confidence 76 467778888999999999999999999999998853 222 23568999999999999 9999
Q ss_pred HHHHHHHHHH
Q 016114 336 LLKRVLRIQE 345 (395)
Q Consensus 336 ~~~~al~~~~ 345 (395)
+|++++.+..
T Consensus 383 ~~~~~l~~~~ 392 (398)
T PRK10747 383 MRRDGLMLTL 392 (398)
T ss_pred HHHHHHhhhc
Confidence 9999987653
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=2.5e-14 Score=113.88 Aligned_cols=182 Identities=14% Similarity=0.089 Sum_probs=147.4
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
.++..+..++.+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..++++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--- 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--- 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence 345567788999999999999999999999998763 455666778899999999999999999999999986
Q ss_pred hcCCCChhhhhhHHhHHHHHHHc--------CChHHHHHHHHHHHHHHHHHhCCCChhHHHH--------------HHHH
Q 016114 92 NRGTESADLVLPLFSLGSLFIKE--------GKAVDAESVFSRILKIYTKVYGENDGRVGMA--------------MCSL 149 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~l 149 (395)
.++++....+++.+|.++... |++++|...+++++... ++++....+ ...+
T Consensus 100 --~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 100 --HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred --CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666888999999876 78999999999998763 233322111 2467
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
|.++...|++.+|+..++++++.. ++.+....++..+|.++...|++++|..+++....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-------PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999999853 34455577889999999999999999998876543
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=5.7e-14 Score=111.85 Aligned_cols=182 Identities=14% Similarity=0.024 Sum_probs=146.7
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
..+..+..++.+|..+...|++++|...+++++.. .++++....++..+|.++...|++++|+..++++++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-- 100 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-- 100 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--
Confidence 34566788999999999999999999999999876 34556666788999999999999999999999999853
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHhhhCCCChhHHH--------------HHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVT--------------HLL 233 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~ 233 (395)
|+++....++..+|.++... |++++|+..+++++.... +++.... ...
T Consensus 101 -----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 101 -----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-----NSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred -----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHHHHHHHH
Confidence 44454455678889998876 789999999999887532 2222111 123
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
.+|.++...|++.+|+..++++++.. +++|....++..+|.++...|++++|..+++....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67889999999999999999998742 44577788999999999999999999998876543
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-14 Score=116.01 Aligned_cols=290 Identities=13% Similarity=0.056 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
..+.-....|..++...+|.+|+..+..|+++ .|+.+..|.+.+.+++..|+|++|.-..++.+++
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------ 112 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRL------ 112 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheec------
Confidence 34555667788899999999999999999997 3555788889999999999999999999888876
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL--------RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 208 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~--------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (395)
.+.........+.++...++..+|...++..- .............|........-+.++...|++++|..
T Consensus 113 --kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 113 --KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred --CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 23334466667777777777777776665221 11111111122234444555667889999999999987
Q ss_pred HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC---------cchHHHHHHHHH
Q 016114 209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD---------QSISFPMLHLGI 279 (395)
Q Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~la~ 279 (395)
.--..+++ ++....++..-|.++...++.+.|+..|++++.+ ++++ +.....+..-|.
T Consensus 191 ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 191 EAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred HHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 66555543 3456677778889999999999999999999974 2333 334445566788
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 016114 280 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL 359 (395)
Q Consensus 280 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 359 (395)
-.++.|++..|.++|..++.+... +....+..|.+.+.+..++|+.. +|+.-...++.+ ++..+.++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~-eaisdc~~Al~i--------D~syikal 324 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLR-EAISDCNEALKI--------DSSYIKAL 324 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCch-hhhhhhhhhhhc--------CHHHHHHH
Confidence 889999999999999999987522 23445778999999999999999 999999999975 67888999
Q ss_pred HHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 360 KKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 360 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
..-|.++...++|++|.+.|+++.+....
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999886554
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.65 E-value=1.7e-12 Score=109.56 Aligned_cols=324 Identities=14% Similarity=0.052 Sum_probs=208.5
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
..|..+.++-..|..+...|+-++|..+.+.++.. ++....+|..+|.++....+|++|+++|+.|+.+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--- 104 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--- 104 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc---
Confidence 45555666667777777888888888777777652 2233456777888888888888888888888876
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
.++....+..++.+..++++++.....-.+.++. .|.....|...+..+...|++..|....+....
T Consensus 105 -----~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 105 -----EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred -----CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888887777666666654 455556788889999999999999998888777
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251 (395)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 251 (395)
..... +++.......+......+....|.+++|.+.+..--.- -.+........+.++...+++++|...
T Consensus 172 t~~~~--~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 172 TQNTS--PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred hhccC--CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 65421 22222222333444556666777777776665432111 112223344557777777777777777
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-c----------------------------------------------
Q 016114 252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYH-L---------------------------------------------- 284 (395)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~---------------------------------------------- 284 (395)
+...+.. .|+....+..+-.++.. .
T Consensus 242 y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 242 YRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred HHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 7665541 22222222111111110 0
Q ss_pred -----------------CChHHHHHHHHHHHHHHHHHcCCC------------Ch-HHHHHHHHHHHHHHHcCCchhHHH
Q 016114 285 -----------------NRDKEAEKLVLEALYIREIAFGKD------------SL-PVGEALDCLVSIQTRLGEDDTKLL 334 (395)
Q Consensus 285 -----------------g~~~~A~~~~~~al~~~~~~~~~~------------~~-~~~~~~~~l~~~~~~~~~~~~~A~ 334 (395)
.+..+ ....++.+..+...+++. .| ....+++.++.-+...|+++ .|.
T Consensus 314 ~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~-~A~ 391 (700)
T KOG1156|consen 314 LLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE-VAL 391 (700)
T ss_pred HhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH-HHH
Confidence 00110 112233332232222221 12 23455677889999999999 999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 335 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 335 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
.+...|++ ..|..++.+..-|+++...|+.++|..++.++.++..
T Consensus 392 ~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 392 EYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99999984 5688899999999999999999999999999987653
No 81
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=8.9e-13 Score=111.47 Aligned_cols=324 Identities=14% Similarity=0.049 Sum_probs=239.2
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
++-...+.-..+..-+..+...+.++-|+..|..+++.+. ..-..+...+..-...|..++-..++++++..
T Consensus 508 igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp--------~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 508 IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP--------CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc--------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 3445556666777888888888999999999999888752 22334555566666778888888899998876
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 168 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 168 (395)
+ |.....+...+..+...|+...|...+.++++. +|..-.++..--.+.....+++.|..+|.+
T Consensus 580 ~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 580 C--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred C--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3 344455666778888889999999999998876 344445566666777888899999999998
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114 169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248 (395)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 248 (395)
+.... +. ..++..-+.+...+++.++|+.+++++++.+ |.....+..+|.++..+++.+.|
T Consensus 644 ar~~s-------gT----eRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 644 ARSIS-------GT----ERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred HhccC-------Cc----chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHH
Confidence 87632 11 3445666777888899999999999998853 56667888899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114 249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 328 (395)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (395)
...|...+. .-|.....|..|+.+-...|+...|...++++.- .+|.....+.....+-.+.|+
T Consensus 705 R~aY~~G~k--------~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 705 REAYLQGTK--------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHHHhccc--------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCC
Confidence 988887765 2456666788888888889999999888888753 224444455556666777888
Q ss_pred chhHHHHHHHHHHHHHHhc----------c--CCCC----------HHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 329 DDTKLLELLKRVLRIQERE----------F--GSES----------EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 329 ~~~~A~~~~~~al~~~~~~----------~--~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
.+ .|.....+|++-+... . +... .....++..+|.++....++++|..+|.+++.++
T Consensus 769 ~~-~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 769 KE-QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HH-HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 88 8888888877643221 0 0000 0113467788999999999999999999999999
Q ss_pred HHHHhh
Q 016114 387 MKYKQK 392 (395)
Q Consensus 387 ~~~~~~ 392 (395)
++++..
T Consensus 848 ~d~GD~ 853 (913)
T KOG0495|consen 848 PDNGDA 853 (913)
T ss_pred CccchH
Confidence 887754
No 82
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.63 E-value=4.8e-13 Score=108.61 Aligned_cols=229 Identities=15% Similarity=0.072 Sum_probs=164.2
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
.+..+...|..|...+++++|...|.++.....+. .+....+..+...+.++... ++++|+.+++++++++...
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--- 107 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--- 107 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc---
Confidence 34566667888999999999999999999998773 33445677788888888776 9999999999999999864
Q ss_pred CCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
..+...+.++..+|.+|... |++++|+++|++|+++++... .......++..+|.++...|+|++|++.|++....
T Consensus 108 -G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 108 -GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp -T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56677788999999999999 999999999999999988754 33456678889999999999999999999998763
Q ss_pred HHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 016114 259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 338 (395)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 338 (395)
..... .........+...+.|+...||+..|...+++....... -.+..-...+..|-..+.. |+.+ .|.
T Consensus 185 ~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~-~D~e-----~f~ 254 (282)
T PF14938_consen 185 CLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEE-GDVE-----AFT 254 (282)
T ss_dssp CCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHT-T-CC-----CHH
T ss_pred hhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHh-CCHH-----HHH
Confidence 21110 011223345567788999999999998888887654311 1123334445555555543 4444 366
Q ss_pred HHHHHHHhc
Q 016114 339 RVLRIQERE 347 (395)
Q Consensus 339 ~al~~~~~~ 347 (395)
.++.-+.++
T Consensus 255 ~av~~~d~~ 263 (282)
T PF14938_consen 255 EAVAEYDSI 263 (282)
T ss_dssp HHCHHHTTS
T ss_pred HHHHHHccc
Confidence 677666654
No 83
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.61 E-value=5.7e-13 Score=108.20 Aligned_cols=227 Identities=15% Similarity=0.076 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
..+..+...|..|...|++++|...|.++..+..+.. +....+..+...+.++... ++++|+.++++++.++...
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-- 107 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-- 107 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--
Confidence 4566677778999999999999999999999987743 4556677788888887666 9999999999999998774
Q ss_pred CCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
......+..+..+|.+|... |++++|+++|++|.+++... ..+.....++..+|.++...|+|++|++.|++...
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 23445788999999999999 99999999999999999863 35566678889999999999999999999999876
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh--cCChHHHHHH
Q 016114 216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKL 293 (395)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~ 293 (395)
...... .........+...+.+++..|++..|...+++...... +-.+..-......|-..+.. ...+++|+.-
T Consensus 184 ~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~---~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 184 KCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP---SFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp TCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST---TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred Hhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 432211 01223444566778899999999999988887654210 00122223344455554443 2345555555
Q ss_pred HHH
Q 016114 294 VLE 296 (395)
Q Consensus 294 ~~~ 296 (395)
|..
T Consensus 260 ~d~ 262 (282)
T PF14938_consen 260 YDS 262 (282)
T ss_dssp HTT
T ss_pred Hcc
Confidence 443
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7.3e-11 Score=98.97 Aligned_cols=365 Identities=15% Similarity=0.147 Sum_probs=227.2
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH-----------------------HHhcCcChHHH
Q 016114 2 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL-----------------------ESRYGKTSILL 58 (395)
Q Consensus 2 l~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~ 58 (395)
+++++..+..-++....++..-|.+++..|+|++|...|+..++-. .+.........
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 3444455544444444566778999999999999999999874310 01111111235
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC-------hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-------ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
.+.+++.+.++...|+|.+|++.+++++.++++.+..++ .+...+...++.++..+|+..+|...|...+...
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 677889999999999999999999999998877654322 1234567789999999999999999999887652
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114 132 TKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 210 (395)
Q Consensus 132 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (395)
..+.|..+.+-+||-.+-....-++. ++..++.-...........-.......++.|.+.+.+..+..+.+.+..
T Consensus 255 ----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 255 ----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred ----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34566677777777655433332221 1111111110000000000011222344566666666666655554433
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch-HHHHHHHHHHHHhcCChHH
Q 016114 211 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKE 289 (395)
Q Consensus 211 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~ 289 (395)
.. . ....|..................+.+|.+++...-+ .+|.. ..+...++.+...+|+++.
T Consensus 331 a~-------l-p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--------~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 331 AS-------L-PGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--------GHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred Hh-------C-CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--------cCCchhHHHHHHHHHHHHhcCCHHH
Confidence 22 1 123333332222333333333467777777766544 34443 5567788999999999999
Q ss_pred HHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 016114 290 AEKLVLEALYIREIAFGK--DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD 367 (395)
Q Consensus 290 A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 367 (395)
|++.+...+......+.. ..|. +-..+-..+.+.++.. .|...+.+|+..++.... ..+.....+..++.+-.
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~---~V~aiv~l~~~~~~~~-~a~~vl~~Ai~~~~~~~t-~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG---TVGAIVALYYKIKDND-SASAVLDSAIKWWRKQQT-GSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh---HHHHHHHHHHhccCCc-cHHHHHHHHHHHHHHhcc-cchHHHhHHHHHhHHHH
Confidence 999998555333222211 1232 2334555677777777 899999999998877543 33566667778888888
Q ss_pred HhcchhhhchhhHHHHHHHHHHHh
Q 016114 368 KLGRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 368 ~~g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
+.|+-++|..++++.+...+...+
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHH
Confidence 889999999999999986655433
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.59 E-value=2.6e-12 Score=110.63 Aligned_cols=289 Identities=17% Similarity=0.163 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
.+.+.++..|..+++.+.|..+.++++++.. .+.+.++..++.++...+++.+|+.....+++-+...
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N----- 546 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN----- 546 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-----
Confidence 6678899999999999999999999998732 1345678889999999999999999999888864331
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
......-..+-...++.++|+..+...+.+.+...+-... +.......-+.+....++..+|+....++.......
T Consensus 547 ---~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 547 ---HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred ---hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 1222222333444788899999998888887743211000 011222333444445567777777777766654421
Q ss_pred c--------------cCCCCc--hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114 177 N--------------YMSLDD--SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240 (395)
Q Consensus 177 ~--------------~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 240 (395)
. ..++++ ......+...+..+...+..++|..++.++-.+ .+.....++..|.++.
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLE 695 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHH
Confidence 0 011221 223445567788889999999999999988775 3667788999999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH--HHHHHHHHHHHHcCCCChHHHHHHHH
Q 016114 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK--LVLEALYIREIAFGKDSLPVGEALDC 318 (395)
Q Consensus 241 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~ 318 (395)
.+|++.+|.+.|..++.+ +|+...+...+|.++...|+..-|.. ++..++++. |....+|+.
T Consensus 696 ~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--------p~n~eaW~~ 759 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--------PLNHEAWYY 759 (799)
T ss_pred HHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--------CCCHHHHHH
Confidence 999999999999999884 46666778899999999999888877 888888753 445568999
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 319 LVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 319 l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
+|.++.+.|+.+ +|.++|+-++++-..
T Consensus 760 LG~v~k~~Gd~~-~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 760 LGEVFKKLGDSK-QAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHccchH-HHHHHHHHHHhhccC
Confidence 999999999999 999999999987544
No 86
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=3.5e-12 Score=107.99 Aligned_cols=317 Identities=14% Similarity=0.063 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|..-.++...+..-..-|..++-..++++++..+++ .-..+...+..+...|+...|..++.++.+.
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk--------ae~lwlM~ake~w~agdv~~ar~il~~af~~----- 613 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK--------AEILWLMYAKEKWKAGDVPAARVILDQAFEA----- 613 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc--------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-----
Confidence 444455666666666777888888888888876432 1223445567777788888888888888775
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
+|..-..+..-..+.....+++.|..+|.++... ..+..++..-+.+...+++.++|+.+++++++.+
T Consensus 614 ---~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 614 ---NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred ---CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3445555666666777788888888888887653 2233556666777778888888888888888854
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
+.....+..+|.++..+++.+.|...|...+.. -|.....|..|+.+-...|+...|...++
T Consensus 682 ----------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 682 ----------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred ----------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 223456678888888888888888888776654 24555667788888888888888888888
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--------HcCCCCh--------------H
Q 016114 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI--------AFGKDSL--------------P 311 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~--------------~ 311 (395)
++.- .+|.....|......-.+.|+.+.|.....+|++-+.. +.-..+| .
T Consensus 744 rarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~ 815 (913)
T KOG0495|consen 744 RARL--------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH 815 (913)
T ss_pred HHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence 8764 45666667777777777888888888888887764311 0000000 0
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
...++..+|.++....+++ +|.+.|.+++.+ .|+..+++..+-..+...|.-++-.+.+.+...-.+.++
T Consensus 816 dphVllaia~lfw~e~k~~-kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIE-KAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred CchhHHHHHHHHHHHHHHH-HHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 1234667888888888898 999999999964 455567777777788888877777777777665544443
No 87
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=2e-11 Score=99.65 Aligned_cols=221 Identities=13% Similarity=0.034 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHh
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN 92 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~ 92 (395)
++...++..+-.++...+.+++|+..+.+++.+ .|....++...+.++...| ++++++..+.+++..
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---- 101 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---- 101 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----
Confidence 456666666667788889999999999999986 3566678889999999998 679999999999875
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCCh--HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
+|....++...+.++...|+. ++++.++.++++. +|....++...+.++...|++++|+.++.+++
T Consensus 102 ----npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 102 ----NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred ----CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 566677899999999888874 6778888888875 56777899999999999999999999999999
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh--
Q 016114 171 RVIKDSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-- 241 (395)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-- 241 (395)
+... .+ ..+++..+.+.... |.+ ++++.+..+++.+ .|....+++.++.++..
T Consensus 170 ~~d~-------~N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~ 231 (320)
T PLN02789 170 EEDV-------RN---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDK 231 (320)
T ss_pred HHCC-------Cc---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCC
Confidence 8632 22 34567777776665 333 4677777777775 35556678888888877
Q ss_pred --hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc
Q 016114 242 --SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 284 (395)
Q Consensus 242 --~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 284 (395)
.++..+|.+.+.+++. ..+....++..|+.+|...
T Consensus 232 ~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 232 EALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 3455668777777655 2455667888889888763
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=6.7e-11 Score=102.34 Aligned_cols=317 Identities=16% Similarity=0.105 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
.+++.....++...|++++|+.++.+.... -.+....+-..|.++..+|++++|...|...+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 455666778889999999999999775442 2345667788999999999999999999998886
Q ss_pred ChhhhhhHHhHHHHHHHcC-----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHH-HHHHHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKKAL 170 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~ 170 (395)
.|+....+..+..+..... +.+.-..+|++....+.+. ..|. .+...+..-..+.. +..++...+
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s---~~~~------rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS---DAPR------RLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc---cchh------HhhcccCCHHHHHHHHHHHHHHHH
Confidence 5666666766666663333 2344445555443332111 0111 11111111112222 223333332
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC--------CCCh-hHHHHHHHHHHHHHh
Q 016114 171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG--------KEHP-SFVTHLLNLAASYSR 241 (395)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~-~~~~~~~~la~~~~~ 241 (395)
. + .-| ....++-.+|....+..-...++.......+.... ...| ...++++.+|..|..
T Consensus 139 ~---K-----gvP----slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 139 R---K-----GVP----SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred h---c-----CCc----hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 2 1 111 22244545554333222222222222221111100 1123 346788999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114 242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS 321 (395)
Q Consensus 242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 321 (395)
.|++++|+++.+++++ ..|.....+...|.++.+.|++.+|...++.|..+.. ..-..-...+.
T Consensus 207 ~g~~~~Al~~Id~aI~--------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--------~DRyiNsK~aK 270 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIE--------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL--------ADRYINSKCAK 270 (517)
T ss_pred hCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--------hhHHHHHHHHH
Confidence 9999999999999998 4688899999999999999999999999999876431 11122345677
Q ss_pred HHHHcCCchhHHHHHHHHHHHHHHhccC-C-CC---HHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114 322 IQTRLGEDDTKLLELLKRVLRIQEREFG-S-ES---EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 322 ~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
.+.+.|+.+ +|...+..- .+.-. + .+ ..........|.+|.+.|++..|+..|..+..+...+.+
T Consensus 271 y~LRa~~~e-~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 271 YLLRAGRIE-EAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHCCCHH-HHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 788899988 887665443 22111 1 11 112334456799999999999999999999988877643
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.51 E-value=6e-12 Score=111.36 Aligned_cols=330 Identities=12% Similarity=0.077 Sum_probs=203.2
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc--------------------------CcChH--HHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------------------------GKTSI--LLVTSLL 63 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------~~~~~--~~~~~~~ 63 (395)
-+|..+.++..||.+|...-+...|..+|++|.++-.... +...+ .....+.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 4567788889999999999999999999999987521100 00000 1112233
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
..|..|...+++..|+..|+.++.. +|....++..+|.+|...|++..|.+.|.++..+ +|...
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~ 630 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--------RPLSK 630 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhH
Confidence 3555566667777777777777664 6777788999999999999999999999999876 46555
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
...+..+.+....|+|.+|+..+...+...... .+-....+.++..++..+...|-..+|..+++++++.+.-....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e---~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLE---RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 677788889999999999999998887765432 12223345566677777777787778888887776654322110
Q ss_pred C------------------------Ch--------------------------------------hHHHHHHHHHHHHHh
Q 016114 224 E------------------------HP--------------------------------------SFVTHLLNLAASYSR 241 (395)
Q Consensus 224 ~------------------------~~--------------------------------------~~~~~~~~la~~~~~ 241 (395)
. -| .....|+++|.-|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 0 00 001223344443333
Q ss_pred --------hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 016114 242 --------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 313 (395)
Q Consensus 242 --------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 313 (395)
+.+...|+.++.+++.+.. .....+..||.+ ...|++.-|..+|-+++... |...
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~a--------nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se--------p~~~ 850 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLCA--------NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--------PTCH 850 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHhh--------ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--------ccch
Confidence 1122345555555544321 122334444443 33455555555555544322 3333
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 314 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
..+.++|.++....+++ .|...|.++..+ .|.....+...+.+....|+.-++..+|...-++.
T Consensus 851 ~~W~NlgvL~l~n~d~E-~A~~af~~~qSL--------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFE-HAEPAFSSVQSL--------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hheeccceeEEecccHH-HhhHHHHhhhhc--------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 45666666666666666 666666655532 45555666666666677777777777766644443
No 90
>PLN02789 farnesyltranstransferase
Probab=99.50 E-value=9e-11 Score=95.88 Aligned_cols=212 Identities=13% Similarity=-0.008 Sum_probs=160.9
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC-ChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 65 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
+-.++...+.+++|+..+.+++.+ .|....++...+.++...| ++++++..+.+++.. +|...
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npkny 106 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNY 106 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcch
Confidence 334445667889999999999987 6777889999999999998 679999999999876 56666
Q ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114 144 MAMCSLAHAKCANGNA--EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (395)
.++...+.++...|+. ++++.+++++++... . -..++...+.++...|+++++++++.++++.
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-------k---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~----- 171 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-------K---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE----- 171 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-------c---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----
Confidence 7788899898888874 678888888887532 2 2557788999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHhh---hcH----HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHH
Q 016114 222 GKEHPSFVTHLLNLAASYSRS---KNF----VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEA 290 (395)
Q Consensus 222 ~~~~~~~~~~~~~la~~~~~~---~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 290 (395)
++....+++..+.+.... |.+ ++++.+..+++.+ .|....++..++.++.. .++..+|
T Consensus 172 ---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~ 240 (320)
T PLN02789 172 ---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEV 240 (320)
T ss_pred ---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhH
Confidence 345566788888777665 223 4677777777763 46667788888888887 3455667
Q ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114 291 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 326 (395)
Q Consensus 291 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (395)
...+.+++. ..+....++..|+.++...
T Consensus 241 ~~~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 241 SSVCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 777777654 2244445778888888753
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=1.2e-09 Score=92.90 Aligned_cols=319 Identities=11% Similarity=0.081 Sum_probs=211.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
+++....+|..+|.++....+|++|+.+|+.|+.+ .++....+..++....++++++-....-.+.++.
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--- 138 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--- 138 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---
Confidence 45556677889999999999999999999999986 2455677889999999999999888877777765
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
.|.....|...+..+...|++..|....+...........+..............+....|.+++|.+.+..--.
T Consensus 139 -----~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 139 -----RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 456667888899999999999999999888776654221111222334455556677788887777766654322
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-----------
Q 016114 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS----------- 240 (395)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----------- 240 (395)
-. ..-.......+.++...+++++|...+...+... |+....+..+-.++.
T Consensus 214 ~i----------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 214 QI----------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred HH----------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 11 1112333567888889999999998888766542 222211111111110
Q ss_pred ---hh--------------------hcHHHH-----------------------------HHHHHHHHHHHHHhhCCC--
Q 016114 241 ---RS--------------------KNFVEA-----------------------------ERLLRICLDIMTKTVGPD-- 266 (395)
Q Consensus 241 ---~~--------------------~~~~~A-----------------------------~~~~~~a~~~~~~~~~~~-- 266 (395)
.. .++.+. ..++++.+..+....++.
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 00 000000 012222222222222211
Q ss_pred ----------Cc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114 267 ----------DQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 335 (395)
Q Consensus 267 ----------~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 335 (395)
.| ...++++.++.-+...|+++.|..+...|+. ..|...+.+..-|+++...|+.+ +|..
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~-eAa~ 426 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLD-EAAA 426 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChH-HHHH
Confidence 12 3456778899999999999999999999885 45778888888999999999999 9999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHH
Q 016114 336 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 381 (395)
Q Consensus 336 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 381 (395)
.+.++.++ +.++.. +-..-|....+.++.++|.....+
T Consensus 427 ~l~ea~el-------D~aDR~-INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 427 WLDEAQEL-------DTADRA-INSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHhc-------cchhHH-HHHHHHHHHHHccccHHHHHHHHH
Confidence 99988764 333322 122445666666777777665443
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.47 E-value=2e-10 Score=102.00 Aligned_cols=235 Identities=12% Similarity=0.103 Sum_probs=184.5
Q ss_pred hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114 72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 151 (395)
Q Consensus 72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 151 (395)
..+...|...|-+++.+ ++..+.++..||.+|....+...|..+|.+|.++ ++..+.+....+.
T Consensus 471 rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~ad 534 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASAD 534 (1238)
T ss_pred hhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHH
Confidence 34567788888888776 6778889999999999999999999999999987 5566677888999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH
Q 016114 152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 231 (395)
Q Consensus 152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (395)
.|.+..+++.|....-.+-+... .......+..+|..|...++..+|+..++.++.. +|....+
T Consensus 535 tyae~~~we~a~~I~l~~~qka~--------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~ 598 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAP--------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNL 598 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhch--------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHH
Confidence 99999999999988544433221 1112233455888999999999999999999874 5777889
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 016114 232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 311 (395)
Q Consensus 232 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 311 (395)
+..+|.+|...|++..|++.|.++..+ .|......+..+.+....|.+.+|+..+...+.....-. +....
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~g 669 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNG 669 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 999999999999999999999998773 466666777889999999999999999998877654321 22234
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114 312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 348 (395)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 348 (395)
.+.++..++..+...|=.. +|.++++++++.+.-.+
T Consensus 670 LaE~~ir~akd~~~~gf~~-kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 670 LAESVIRDAKDSAITGFQK-KAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 5667777777777777666 89999999988765543
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=2.6e-11 Score=108.85 Aligned_cols=170 Identities=11% Similarity=0.053 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
..++..+-.+....+....+...+-+++...+. .+....++..||.+....|.+++|+..++.++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-------- 115 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-------- 115 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------
Confidence 344444445555555555555555555555443 3455788999999999999999999999999997
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.|+...+..+++.++.+.+++++|+..+++++.. .|+.+..++.+|.++...|++++|+..|++++.-
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~---- 183 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ---- 183 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 6888899999999999999999999999999976 5777789999999999999999999999999871
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
+++. ..++.++|.++...|+.++|...|+++++..
T Consensus 184 ---~p~~---~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 ---HPEF---ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ---CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2333 4566889999999999999999999999874
No 94
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.46 E-value=1.3e-12 Score=83.86 Aligned_cols=77 Identities=18% Similarity=0.412 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
||..+.++..+|.+|...|++++|+.+|++++++ .+..+++++..+.++.++|.++...|++++|+.++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 6899999999999999999999999999999999 5566778888999999999999999999999999999999875
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=3.8e-09 Score=84.79 Aligned_cols=303 Identities=15% Similarity=0.091 Sum_probs=191.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
...-|..-+..|+|.+|.....++-+. .+....++..-+..-..+|+++.+-.++.++-+.. ..+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-------~~~ 151 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-------GDD 151 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-------CCc
Confidence 344555666778888888877775432 22233445556777888899999998888876641 223
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
...+....+.+....|+++.|..-..++++. .|....++.....+|...|++.+...++.+..+.-
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------ 217 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------ 217 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------
Confidence 4456667788888999999999888888876 33334556667788999999988888777655421
Q ss_pred CCCchHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAE--LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
--+++.... +-+.+. ++...++-..+..+...--.+-++. ..+|. ....++.-+...|+.++|.+..+++++
T Consensus 218 ~l~~~e~~~-le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 218 LLSDEEAAR-LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPE---LVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred CCChHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 112222211 122221 1222233233332111100111111 12333 334567778899999999999999887
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
. ..++. +..+. -...-++...=++..++.+... ++.| ..+..||.++.+.+.+. +|..+|
T Consensus 292 ~------~~D~~----L~~~~-~~l~~~d~~~l~k~~e~~l~~h-----~~~p---~L~~tLG~L~~k~~~w~-kA~~~l 351 (400)
T COG3071 292 R------QWDPR----LCRLI-PRLRPGDPEPLIKAAEKWLKQH-----PEDP---LLLSTLGRLALKNKLWG-KASEAL 351 (400)
T ss_pred h------ccChh----HHHHH-hhcCCCCchHHHHHHHHHHHhC-----CCCh---hHHHHHHHHHHHhhHHH-HHHHHH
Confidence 2 12222 11111 1234566666666666665532 3444 56888999999999999 999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
+.+++... . ...+..+|.++.+.|+..+|.+.++.++.+.
T Consensus 352 eaAl~~~~-----s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 352 EAALKLRP-----S----ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHhcCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 98886422 1 4567889999999999999999999998554
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2.4e-10 Score=90.14 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH---------
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT--------- 87 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------- 87 (395)
..+-..+|.+++..|+|++|...|.-+.+- .+ ...+...+++.+++..|.|.+|...-.++-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlf 128 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLF 128 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 345567999999999999999999876541 11 1245577899999999999999887665421
Q ss_pred -HHHHhcC--------CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC
Q 016114 88 -ILELNRG--------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 158 (395)
Q Consensus 88 -~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 158 (395)
+..+... ..-.+..+-...|+.+.+..-.|++|++.|.+.+. ++|.....-..+|.+|.++.-
T Consensus 129 hlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 129 HLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcch
Confidence 1111100 00011222334566666666677777777777664 456665666677888888877
Q ss_pred HHHHHHHHH
Q 016114 159 AEEAVELYK 167 (395)
Q Consensus 159 ~~~A~~~~~ 167 (395)
|+-+.+.+.
T Consensus 201 ydvsqevl~ 209 (557)
T KOG3785|consen 201 YDVSQEVLK 209 (557)
T ss_pred hhhHHHHHH
Confidence 776665554
No 97
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.43 E-value=1.1e-12 Score=84.23 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 309 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
||.++.++.++|.++...|+++ +|+++|++++++ .+..++.+|..+.++.++|.++..+|++++|+.++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~-~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYD-EALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6888999999999999999999 999999999999 66678888899999999999999999999999999999999874
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.42 E-value=1.1e-10 Score=104.81 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 266 (395)
..++.+||.+....|++++|+.+++.++++ .|+...+..+++.++.+.+++++|...+++++. .
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--------~ 149 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--------G 149 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--------c
Confidence 556678888888888888888888888875 466677788888888888888888888888876 3
Q ss_pred CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 344 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 344 (395)
.|+....+..+|.++...|++++|..+|++++. .+|+...++..+|.++...|+.+ +|...|+++++..
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~-~A~~~~~~a~~~~ 218 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALW-RARDVLQAGLDAI 218 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhh
Confidence 577777888888888888888888888888876 22444557788888888888888 8888888888764
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=1.9e-10 Score=90.72 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=105.6
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114 27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 106 (395)
Q Consensus 27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 106 (395)
+....+|..|+.+++-.+..-+ ..--..-..+|.|++..|+|++|...|.-+..- +...+....+
T Consensus 32 fls~rDytGAislLefk~~~~~-------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR-------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhccch-------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchh
Confidence 4567789999998887664422 222345567899999999999999999876541 2223466778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH----------HHHHHhCC---------CChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016114 107 LGSLFIKEGKAVDAESVFSRILK----------IYTKVYGE---------NDGRVGMAMCSLAHAKCANGNAEEAVELYK 167 (395)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~al~----------~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 167 (395)
|+.+++..|.|.+|...-.++-+ +..+. +. +-.++..-...+|.+.+..-.|.+|++.|.
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766521 11111 10 011222334566777777788889999888
Q ss_pred HHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016114 168 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 211 (395)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (395)
+.+. +++........+|.+|.+..-++-+.+.+.
T Consensus 176 rvL~----------dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 176 RVLQ----------DNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHh----------cChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 8775 333444455667888888777666555443
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=8.4e-09 Score=79.71 Aligned_cols=333 Identities=14% Similarity=0.059 Sum_probs=189.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
.++..|.....+..+|.||+...+|..|..+|++.-.. .|.........+..+++.+.+.+|+.......+
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D- 106 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD- 106 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC-
Confidence 34455655566777888888888888888888776443 345555555567777777777777766544322
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 168 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 168 (395)
++.....+...-+.+....+++..+..+.++. .....+....+.|.+.++.|+++.|++-|+.
T Consensus 107 -------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----------p~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 107 -------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----------PSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred -------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----------cCCCccchhccchheeeccccHHHHHHHHHH
Confidence 11122233334455555666666665544432 1123456678888889999999999999999
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC----------CC-----C------hh
Q 016114 169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----------KE-----H------PS 227 (395)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~-----~------~~ 227 (395)
+++. +.-.+.++ ++++.++++.|+++.|+++..+.++.-.+..+ .+ + ..
T Consensus 170 Alqv-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 170 ALQV-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHhh-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 8885 23344443 67888999999999999988887765433211 00 0 11
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHH-----------------HHHHHH-----------hhCCCCcchHHHHHHHHH
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRIC-----------------LDIMTK-----------TVGPDDQSISFPMLHLGI 279 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a-----------------~~~~~~-----------~~~~~~~~~~~~~~~la~ 279 (395)
...+++..+.++.+.|+++.|.+.+... +.-... .++. .|.-..++.++-.
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~-nPfP~ETFANlLl 318 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ-NPFPPETFANLLL 318 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc-CCCChHHHHHHHH
Confidence 2345556677888888888887655321 110000 0011 2333344556666
Q ss_pred HHHhcCChHHHHHHHHHH------------HHHHHHH-cCCCChHHH-HH-----------HHHH-HHHHHHcCCchh--
Q 016114 280 TLYHLNRDKEAEKLVLEA------------LYIREIA-FGKDSLPVG-EA-----------LDCL-VSIQTRLGEDDT-- 331 (395)
Q Consensus 280 ~~~~~g~~~~A~~~~~~a------------l~~~~~~-~~~~~~~~~-~~-----------~~~l-~~~~~~~~~~~~-- 331 (395)
+|.+..-++-|...+-+- .++.... .-+..|+.+ .- +..+ +.+.....+.+.
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 666666666665443221 0111110 112222221 11 1111 112222211111
Q ss_pred --HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 332 --KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 332 --~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
.|++-|+++++++ ..++...+.+|....++..+.+.|+...+.+.++
T Consensus 399 ~R~ai~~Yd~~LE~Y-----------LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKY-----------LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 3344444444433 3456677889999999999999999999887765
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=1.4e-11 Score=89.00 Aligned_cols=110 Identities=12% Similarity=0.135 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
+..+|..+...|++++|+.+|++++.+ +|....++..+|.++...|++++|+..|++++.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 556899999999999999999999875 3556778999999999999999999999999986 577
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 153 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 153 (395)
...+++++|.++...|++++|+..|++++.+ .|.....+.+.+.+.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQ 136 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Confidence 7899999999999999999999999999987 233334455555544
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=3e-11 Score=87.18 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC
Q 016114 37 MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 116 (395)
Q Consensus 37 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (395)
..++++++++. |.. +..+|.++...|++++|...|++++.. .|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~~--------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSVD--------PET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHcC--------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 34677777652 322 446799999999999999999999875 67778999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 117 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
+++|+..|.+++.+ +|....++.++|.++...|++++|+..|++++.+.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999986 45666789999999999999999999999999863
No 103
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=1.4e-08 Score=86.57 Aligned_cols=337 Identities=12% Similarity=0.089 Sum_probs=205.5
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHH--HHHHHhh-------Cc------hhH
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM--AKVLGSI-------GR------AKK 77 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--~~~~~~~-------g~------~~~ 77 (395)
+......+..||..|...|.+++|...|++++....... +...+.+++... ..+...+ |+ .+-
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr--DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR--DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh--hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 445677789999999999999999999999987643321 111111111111 0111111 11 111
Q ss_pred HHHHHHHHHHHHH----HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 016114 78 AVEIYHRVITILE----LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 153 (395)
Q Consensus 78 A~~~~~~al~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 153 (395)
....|+..+.... ...-..+|.....+. -.+-...|+..+-+..|.+|+....-.... ......+..+|..|
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~--kRV~l~e~~~~~~i~tyteAv~~vdP~ka~--Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWH--KRVKLYEGNAAEQINTYTEAVKTVDPKKAV--GSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHH--hhhhhhcCChHHHHHHHHHHHHccCcccCC--CChhhHHHHHHHHH
Confidence 2222332222110 000012333333333 334455688888888999888754222111 22455788999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----hhCCCChh--
Q 016114 154 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK----YKGKEHPS-- 227 (395)
Q Consensus 154 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~-- 227 (395)
...|+.+.|...|+++... .-+.-..++.++.+.|..-....+++.|..+++.|...-.. .+...+|.
T Consensus 398 e~~~~l~~aRvifeka~~V------~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKV------PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HhcCcHHHHHHHHHHhhcC------CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 9999999999999999875 22334556788888998888999999999999988754322 11122232
Q ss_pred ----HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114 228 ----FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 228 ----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 303 (395)
...+|...+.+....|-++.....|++.+++. ..+..+..|.|..+....-++++.+.|++.+.++.
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr--------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk- 542 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR--------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK- 542 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-
Confidence 23345556666667777777778888877753 23344557888888888899999999999888762
Q ss_pred HcCCCChHHHHHHHH---HHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHH-HHHHHHHHHhcchhhhchhh
Q 016114 304 AFGKDSLPVGEALDC---LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL-KKVVSYLDKLGRKEEKFPLK 379 (395)
Q Consensus 304 ~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~ 379 (395)
.|.+...+.. -..........+ .|..+|++|++. ..|....+. ...|.+-..-|--..|+..|
T Consensus 543 -----~p~v~diW~tYLtkfi~rygg~klE-raRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 543 -----WPNVYDIWNTYLTKFIKRYGGTKLE-RARDLFEQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred -----CccHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2333333332 222222223455 899999999874 234444433 34455555667777777777
Q ss_pred HHHH
Q 016114 380 KRLS 383 (395)
Q Consensus 380 ~~a~ 383 (395)
++|.
T Consensus 610 erat 613 (835)
T KOG2047|consen 610 ERAT 613 (835)
T ss_pred HHHH
Confidence 7764
No 104
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.34 E-value=1.7e-10 Score=105.84 Aligned_cols=361 Identities=15% Similarity=0.121 Sum_probs=268.4
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhh
Q 016114 24 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 103 (395)
Q Consensus 24 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 103 (395)
+......+++.+|...=++++++.+...+.+.|+....+..++..++......+|+.+-.+.+.+.....+..+|..+..
T Consensus 672 ~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~ 751 (1236)
T KOG1839|consen 672 AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAAT 751 (1236)
T ss_pred ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccch
Confidence 44445567888899999999999999999999999999999997778888889999999999998877776666666544
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---CCCH---------------------
Q 016114 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NGNA--------------------- 159 (395)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~--------------------- 159 (395)
+.+....-...| +-+..+...+++...+..+.++...+.+ ..+...+.. ....
T Consensus 752 ~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g 828 (1236)
T KOG1839|consen 752 YINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAG 828 (1236)
T ss_pred hhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccC
Confidence 333332222222 5666677777666666555555544333 222111111 0000
Q ss_pred -------------------------------HHHH--HHHHHHH--------------------HHHHhcccCCC-----
Q 016114 160 -------------------------------EEAV--ELYKKAL--------------------RVIKDSNYMSL----- 181 (395)
Q Consensus 160 -------------------------------~~A~--~~~~~a~--------------------~~~~~~~~~~~----- 181 (395)
..+. .....+. ....+......
T Consensus 829 ~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks 908 (1236)
T KOG1839|consen 829 TPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKS 908 (1236)
T ss_pred CCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCC
Confidence 0000 0010000 00000000000
Q ss_pred ----------------Cch--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114 182 ----------------DDS--IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 243 (395)
Q Consensus 182 ----------------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 243 (395)
..| ....-....+......|.+.+|.+ ..+++.......+.-++.....+..++.++...|
T Consensus 909 ~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~ 987 (1236)
T KOG1839|consen 909 EFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG 987 (1236)
T ss_pred CCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc
Confidence 001 011112334455555677888888 7788888888888889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 016114 244 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ 323 (395)
Q Consensus 244 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (395)
+.++|+..-.++.-+.+...|.+++.+...+.+++...+..++...|...+.++..+..-.++++||..+.+..++..++
T Consensus 988 d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~ 1067 (1236)
T KOG1839|consen 988 DNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLL 1067 (1236)
T ss_pred chHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 324 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 324 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
...++++ .|+.+.+.|+....+++++....+...+..+++++..++++..|....+....+..+.
T Consensus 1068 ~~v~e~d-~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1068 LGVEEAD-TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred hhHHHHH-HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence 9999999 9999999999999999999988999999999999999999999999988888776653
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.5e-08 Score=81.13 Aligned_cols=331 Identities=13% Similarity=0.077 Sum_probs=203.1
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH-------HHHHHHHHHHHHHHhhCchhHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEI 81 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~ 81 (395)
....+.+.-..+++.+.++...|+|.+|++.++++++++++.+..++. ....+...++.++..+|+..+|...
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 333344466778999999999999999999999999998776543321 3556677899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHH-HHHHHHHHHHH----HHHHhCCCChhHHHHHHHHHHHHHHC
Q 016114 82 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKI----YTKVYGENDGRVGMAMCSLAHAKCAN 156 (395)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~ 156 (395)
|...+.. ...|.|..+.+-++|-.+-....-++. ++..++.-... ....+ .+...-.++.+.+.+....
T Consensus 247 y~~~i~~----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 247 YVDIIKR----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHh----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 9988765 234566667777776655443333331 11111111000 00000 1122233455555555555
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCc-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhH-HHHHHH
Q 016114 157 GNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLN 234 (395)
Q Consensus 157 g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~ 234 (395)
+..+.+.+.... ..+.. .....+ ............+.+|..++...-+ .+|.. ..+...
T Consensus 321 nk~~q~r~~~a~----------lp~~~p~~~~~~-ll~~~t~~~~~~~~ka~e~L~~~~~--------~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 321 NKMDQVRELSAS----------LPGMSPESLFPI-LLQEATKVREKKHKKAIELLLQFAD--------GHPEKSKVVLLL 381 (652)
T ss_pred hhHHHHHHHHHh----------CCccCchHHHHH-HHHHHHHHHHHHHhhhHHHHHHHhc--------cCCchhHHHHHH
Confidence 555544443322 12222 222322 2233333333356777776665433 23333 556777
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhhC--CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 016114 235 LAASYSRSKNFVEAERLLRICLDIMTKTVG--PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 312 (395)
Q Consensus 235 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 312 (395)
++.+...+|+++.|++.+...+........ ...|.+. ..+-..+...++.+.|...+.+|+......... .+..
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l 457 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG-SIAL 457 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHHHHHHHHhccc-chHH
Confidence 889999999999999999865543332221 2334433 334456778888888999999999988765432 2444
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchh
Q 016114 313 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL 378 (395)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 378 (395)
...+..++.+-.+.|+.+ +|...+++.++. +|....++..+...|... +.+.|..+
T Consensus 458 ~~~~~~aa~f~lr~G~~~-ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEE-EASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HhHHHHHhHHHHhcCchH-HHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 455666788888889988 999999998864 233355666666666543 35555443
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=7.2e-09 Score=89.99 Aligned_cols=263 Identities=16% Similarity=0.086 Sum_probs=162.2
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-----chhHHHHHHHHHHH
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVIT 87 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~ 87 (395)
-++...++...|.++...|++++|...|...++.. |+....+..+..+..... ..+.-..+|.+...
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--------Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--------PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE 105 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH
Confidence 34556777889999999999999999999998762 233334444444442222 23444445544333
Q ss_pred HHHHhcCC--------C----------------ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH--hC-----
Q 016114 88 ILELNRGT--------E----------------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--YG----- 136 (395)
Q Consensus 88 ~~~~~~~~--------~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~----- 136 (395)
.+.+...+ . ...++....++-.+|....+..-...++.......+.. +.
T Consensus 106 ~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~ 185 (517)
T PF12569_consen 106 KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDE 185 (517)
T ss_pred hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcccc
Confidence 22110000 0 00112223333333332222111112222221111110 00
Q ss_pred -CCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016114 137 -ENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 214 (395)
Q Consensus 137 -~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (395)
..+|. ...+++.+|..|...|++++|+.+++++++. .|.....+...|.++-..|++.+|...++.|.
T Consensus 186 ~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 186 EKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----------TPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred ccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 12232 4567889999999999999999999999983 34456778999999999999999999999987
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh-CC-CC---cchHHHHHHHHHHHHhcCChHH
Q 016114 215 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV-GP-DD---QSISFPMLHLGITLYHLNRDKE 289 (395)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~-~~---~~~~~~~~~la~~~~~~g~~~~ 289 (395)
.+- ...-.+-...+..+.+.|+.++|...+..... .. ++ .+ ....+.....|.+|.++|++..
T Consensus 256 ~LD--------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 256 ELD--------LADRYINSKCAKYLLRAGRIEEAEKTASLFTR----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred hCC--------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 652 22223334567778899999999987765432 11 00 00 1223444567999999999999
Q ss_pred HHHHHHHHHHHHHHHc
Q 016114 290 AEKLVLEALYIREIAF 305 (395)
Q Consensus 290 A~~~~~~al~~~~~~~ 305 (395)
|++.|..+.+.+....
T Consensus 324 ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 324 ALKRFHAVLKHFDDFE 339 (517)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987764
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.32 E-value=1.1e-09 Score=99.47 Aligned_cols=250 Identities=14% Similarity=0.052 Sum_probs=170.9
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
++.-+|....++..|...+...+++++|+..++.+++. +|.....++.+|.++...+++.++... .++..
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 44557888899999999999999999999999988774 456677888899999999998888766 55544
Q ss_pred HHHhcC-----------CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC
Q 016114 89 LELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 157 (395)
Q Consensus 89 ~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 157 (395)
...... .+.+..-.+++.+|.||..+|+.++|...+++++++ +|..+.+++++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-
Confidence 322100 012333468889999999999999999999999987 477778999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114 158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 237 (395)
Q Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 237 (395)
+.++|+.++.+|+...-.. .........|. -.+.....+.+.=....++.+.. . .....+..+.-+=.
T Consensus 164 dL~KA~~m~~KAV~~~i~~----kq~~~~~e~W~--k~~~~~~~d~d~f~~i~~ki~~~----~--~~~~~~~~~~~l~~ 231 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKK----KQYVGIEEIWS--KLVHYNSDDFDFFLRIERKVLGH----R--EFTRLVGLLEDLYE 231 (906)
T ss_pred hHHHHHHHHHHHHHHHHhh----hcchHHHHHHH--HHHhcCcccchHHHHHHHHHHhh----h--ccchhHHHHHHHHH
Confidence 9999999999998875432 11111111111 11222222333322222222221 1 12234455666778
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 238 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
.|...++|++++.+++.+++. .+....+...++.+|. +.|.. ...+++.+++
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 889999999999999999983 3445567788888887 33333 4445555444
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32 E-value=2.2e-10 Score=87.37 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHH-HHcCC--hHHHHHHHHHHHHHHH
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYT 132 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~al~~~~ 132 (395)
|.....+..+|.++...|++++|+..|++++.+ .|....++..+|.++ ...|+ +++|...++++++.
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-- 139 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-- 139 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--
Confidence 455678999999999999999999999999987 567788899999974 67787 59999999999986
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
+|....++..+|..+...|++++|+.+++++++..
T Consensus 140 ------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 140 ------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56666789999999999999999999999999874
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.31 E-value=1.9e-10 Score=87.16 Aligned_cols=164 Identities=20% Similarity=0.143 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|++.+|+..+.++...
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 333444 77888999999999988888776543 4444555666899999999999999999999875
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
.|.....++.+|.+|.+.|++++|..-|.+++++.. ..+ .+.+|+|..+.-.|+++.|..++..+..
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-------~~p---~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-------NEP---SIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-------CCc---hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566678899999999999999999999999999753 222 3458999999999999999999998765
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114 216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 254 (395)
. .+....+..+++.+...+|++++|.....+
T Consensus 197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred C--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 2 233456778999999999999999886544
No 110
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=4e-08 Score=79.13 Aligned_cols=274 Identities=14% Similarity=0.077 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
+.-.-.+..-+.....+|+++.+-.++.++-+.. ++ .........+......|+++.|..-..++++.
T Consensus 115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----- 182 (400)
T COG3071 115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GD-DTLAVELTRARLLLNRRDYPAARENVDQLLEM----- 182 (400)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CC-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----
Confidence 3334445667788889999999999999887642 11 33445667889999999999999999988876
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHHCCCHHHHHH---HHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA--KCANGNAEEAVE---LYKK 168 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~---~~~~ 168 (395)
.|....++.....+|...|++.+...+..+.-+.. . -+++.. .-+-+.+.. +...++-..+.. +.+.
T Consensus 183 ---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~--l~~~e~-~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 183 ---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--L--LSDEEA-ARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred ---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--C--CChHHH-HHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 56666777888899999999999888877654421 1 112222 222222221 222222222222 2222
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114 169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248 (395)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 248 (395)
.-... ..++. +...++.-+...|+.++|.+..+++++.. .++. ....++ ...-++...=
T Consensus 255 ~pr~l-------r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~---L~~~~~--~l~~~d~~~l 313 (400)
T COG3071 255 QPRKL-------RNDPE---LVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPR---LCRLIP--RLRPGDPEPL 313 (400)
T ss_pred ccHHh-------hcChh---HHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChh---HHHHHh--hcCCCCchHH
Confidence 11111 12222 22557888899999999999999988742 2232 111111 2344666666
Q ss_pred HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114 249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 328 (395)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (395)
++..++.+. .+|+....+..||.++.+.+.|.+|..+|+.+++.. + ....+..+|.++.+.|+
T Consensus 314 ~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-----~----s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 314 IKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR-----P----SASDYAELADALDQLGE 376 (400)
T ss_pred HHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-----C----ChhhHHHHHHHHHHcCC
Confidence 666666655 355566788999999999999999999999888743 1 22457889999999999
Q ss_pred chhHHHHHHHHHHHHHHh
Q 016114 329 DDTKLLELLKRVLRIQER 346 (395)
Q Consensus 329 ~~~~A~~~~~~al~~~~~ 346 (395)
.. +|.+.+++++.+..+
T Consensus 377 ~~-~A~~~r~e~L~~~~~ 393 (400)
T COG3071 377 PE-EAEQVRREALLLTRQ 393 (400)
T ss_pred hH-HHHHHHHHHHHHhcC
Confidence 99 999999999966544
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.29 E-value=3.4e-10 Score=85.81 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=130.1
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|++.+|+..++++...
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 3444444 66777777788887777777665432 2333345555899999999999999999999876
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.|....+++.+|.+|.+.|++++|..-|.+++++. +....+.+|+|..+.-.|+++.|..++..+...
T Consensus 130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 67778899999999999999999999999999984 223357899999999999999999999998763
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
++.+ ..+..|++.+...+|++++|.....+
T Consensus 198 -------~~ad---~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 -------PAAD---SRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -------CCCc---hHHHHHHHHHHhhcCChHHHHhhccc
Confidence 2222 23458999999999999999876543
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.29 E-value=3.2e-09 Score=96.66 Aligned_cols=250 Identities=13% Similarity=0.059 Sum_probs=170.7
Q ss_pred CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
.-+|....++..|...+...+++++|...++.+++. +|.....++.+|.++...+++.++... .++.+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 346788889999999999999999999999988775 567777888999999999999888777 6665543
Q ss_pred hcccC---------CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH
Q 016114 175 DSNYM---------SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 245 (395)
Q Consensus 175 ~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 245 (395)
..... -.+.+....++..+|.+|..+|+.++|...+++++++ +|..+.+++++|..|... ++
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence 21000 0001111246788999999999999999999999985 367788999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114 246 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 325 (395)
Q Consensus 246 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (395)
++|+.++.+|+..+-.. .........|.. .+.....+.+.=....++..... ........+.-+-..|..
T Consensus 166 ~KA~~m~~KAV~~~i~~--kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~ki~~~~------~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 166 EKAITYLKKAIYRFIKK--KQYVGIEEIWSK--LVHYNSDDFDFFLRIERKVLGHR------EFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHHHHHHHHHHHHhh--hcchHHHHHHHH--HHhcCcccchHHHHHHHHHHhhh------ccchhHHHHHHHHHHHhh
Confidence 99999999998864322 111111122221 12222333333333333322211 122344556677788888
Q ss_pred cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114 326 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 326 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 385 (395)
..+++ +++.+++.++++. |....+...++.+|. +.|.. -..++..+.+
T Consensus 236 ~~~~~-~~i~iLK~iL~~~--------~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 236 LEDWD-EVIYILKKILEHD--------NKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred hhhhh-HHHHHHHHHHhcC--------CcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 88898 8999999998752 334556788888887 55554 5555555544
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.28 E-value=4.7e-10 Score=79.26 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=96.2
Q ss_pred cCCCc-HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114 9 LKDDE-PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 87 (395)
Q Consensus 9 l~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 87 (395)
+.+.+ ++.-+.++.+|..++..|++++|...|+-...+ +|.....+++||.++..+|++.+|+..|.++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44556 777888899999999999999999999987765 467788899999999999999999999999998
Q ss_pred HHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 88 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
+ .|+.+..+.++|.++...|+.+.|.+.|+.++..+
T Consensus 98 L--------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 98 I--------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred c--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7 56777899999999999999999999999999987
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.28 E-value=6.5e-09 Score=80.06 Aligned_cols=167 Identities=19% Similarity=0.142 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (395)
....++..|......|++.+|+..|++.+... |.++....+...+|.++...|++++|+..+++.+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---- 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---- 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 34567889999999999999999999998864 5566677788999999999999999999999988764
Q ss_pred CCCChhHHHHHHHHHHHHHhhh-----------cHHHHHHHHHHHHHHHHHhhCCCCcchHHH--------------HHH
Q 016114 222 GKEHPSFVTHLLNLAASYSRSK-----------NFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLH 276 (395)
Q Consensus 222 ~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~ 276 (395)
|.++....+++.+|.++.... ...+|...|+..+..+ |+++....+ -..
T Consensus 73 -P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 73 -PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888866543 3447777777776543 344433322 245
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCch
Q 016114 277 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 330 (395)
Q Consensus 277 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (395)
+|..|.+.|.+..|+..++.+++.+ |+.+....++..++..+.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence 6889999999999999999999876 777888889999999999999766
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=2.7e-09 Score=81.42 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=116.0
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhh
Q 016114 23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 102 (395)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (395)
-+-.|+..|+++......++.. ++.. -+...++.++++..+++++.. +|....
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~-------~~~~------------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~ 74 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA-------DPLH------------QFASQQTPEAQLQALQDKIRA--------NPQNSE 74 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh-------Cccc------------cccCchhHHHHHHHHHHHHHH--------CCCCHH
Confidence 3456888899887654432111 1100 111366778888888888876 677788
Q ss_pred hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHHHHHhcccC
Q 016114 103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK-CANGN--AEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~a~~~~~~~~~~ 179 (395)
.+..+|.+|...|++++|+..|++++.+ .|....++..+|.++ ...|+ +++|...++++++.
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~------- 139 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL------- 139 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------
Confidence 9999999999999999999999999987 455567788999874 67787 59999999999985
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
.+++ ..++.++|..+...|++++|+.+++++++..
T Consensus 140 dP~~---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 140 DANE---VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2333 3467899999999999999999999998873
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=5e-08 Score=85.75 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=156.8
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH---hCCCChh---------HHHHHHHHHHHHHHCCCHHHHH
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV---YGENDGR---------VGMAMCSLAHAKCANGNAEEAV 163 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~ 163 (395)
+......+|++.+.-+...++.+.|+++|+++-.-...+ +.++.+. ....+...|......|+.+.|+
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 344556788999999999999999999999863211111 1111111 1134566788888899999999
Q ss_pred HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 243 (395)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 243 (395)
.+|..|-+. +.+..+..-+|+.++|-.+.++.- ...+.+.||+.|...|
T Consensus 933 ~~Y~~A~D~------------------fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 933 SFYSSAKDY------------------FSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHhhhh------------------hhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhhH
Confidence 999887654 345566677788887766555421 1234567888888888
Q ss_pred cHHHHHHHHHHHHH------HHHHhhCCCCc------chHHHHHHHHHHHHhcC-ChHHHHHHHHHH-------------
Q 016114 244 NFVEAERLLRICLD------IMTKTVGPDDQ------SISFPMLHLGITLYHLN-RDKEAEKLVLEA------------- 297 (395)
Q Consensus 244 ~~~~A~~~~~~a~~------~~~~~~~~~~~------~~~~~~~~la~~~~~~g-~~~~A~~~~~~a------------- 297 (395)
++.+|+.+|.+|.. ++++..-.+.. ....-....|..|...| +.+.|..+|.+|
T Consensus 982 ~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhh
Confidence 88888888876643 22221000000 00001122344455555 666666665543
Q ss_pred -----HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH------HHHHHHHHhc-----------cC------
Q 016114 298 -----LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL------KRVLRIQERE-----------FG------ 349 (395)
Q Consensus 298 -----l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~------~~al~~~~~~-----------~~------ 349 (395)
+++..+-+.++. .+..+..-+..+....+++ +|..++ +.|+.+.... ..
T Consensus 1062 qQf~aL~lIa~DLd~~s--Dp~ll~RcadFF~~~~qye-kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGS--DPKLLRRCADFFENNQQYE-KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred cccHHHHHHHHhcCCCC--CHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCC
Confidence 222222222221 1234666778888888888 887665 4445444221 11
Q ss_pred CCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 350 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 350 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
++......++..+|.++.++|.|..|-+-|.+|-.--+.+
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AM 1178 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAM 1178 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHH
Confidence 1123456788999999999999999999888875544433
No 117
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.27 E-value=2.9e-09 Score=98.13 Aligned_cols=209 Identities=19% Similarity=0.209 Sum_probs=186.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (395)
...+......|.+.+|.+ ..+++...... .+.-++.+..++..++.++...|+.++|+.+-.++.-+.++..|.+++
T Consensus 936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYE-LPESLNLLNNV--MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhcccchhhhhh-hhhhhhHHHHh--hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344555666777888888 77777776644 456678888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 306 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 306 (395)
.....+.+++......++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+.+.+.|....+..++
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 016114 307 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL 359 (395)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 359 (395)
+.+..++..+..+++++...+++. .|....+....++...+|++++......
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~dfr-~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFR-NALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHHHH-HHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence 999999999999999999999999 9999999999999999999887655443
No 118
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.26 E-value=6.1e-10 Score=83.36 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=95.0
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
....+..++.+|.++...|++++|+..|++++.+. ++++....++.++|.++...|++++|+..+++++.+
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---- 101 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---- 101 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34467788999999999999999999999999873 233455678999999999999999999999999986
Q ss_pred cCCCChhhhhhHHhHHHHHH-------HcCChHHHHHHHHHHHHHHHHHhCCCChhH
Q 016114 93 RGTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGRV 142 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 142 (395)
.|.....+..+|.++. ..|+++.|...+.+++..+++..+.+++..
T Consensus 102 ----~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 102 ----NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred ----CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 2333445555555555 999999999999999999888877666443
No 119
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.26 E-value=4e-09 Score=81.20 Aligned_cols=169 Identities=16% Similarity=0.138 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 266 (395)
...+...|..+...|++.+|+..|++.+... +.++....+...+|.++...|++++|+..+++.+... |+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3456788999999999999999999988764 3567778889999999999999999999999988743 67
Q ss_pred CcchHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHHHHHcCCCChHHHH--------------HHHHHHH
Q 016114 267 DQSISFPMLHLGITLYHLN-----------RDKEAEKLVLEALYIREIAFGKDSLPVGE--------------ALDCLVS 321 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~~l~~ 321 (395)
++....+++.+|.++.... ...+|...|+..+..+ |+++.... --..+|.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999998876543 2346777777777655 44443322 2345788
Q ss_pred HHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc
Q 016114 322 IQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF 376 (395)
Q Consensus 322 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 376 (395)
.|.+.|.+. .|+..++.+++-+ ++.+....++..++..|...|..+.|.
T Consensus 150 ~Y~~~~~y~-aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYK-AAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HH-HHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHH-HHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999 9999999999875 567888899999999999999988543
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=8.2e-10 Score=95.19 Aligned_cols=227 Identities=15% Similarity=0.123 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|.....-..++..+...|-...|+..|++.- .+.....||...|+..+|..+..+-++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le------ 452 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE------ 452 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc------
Confidence 3344455678999999999999988887642 344567888899999999888776544
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
.+..+..|. ..|++-.--.+|+++.++.... .+.+...+|......++|+++.+.++.++++.
T Consensus 453 ---k~~d~~lyc-------~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 453 ---KDPDPRLYC-------LLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred ---CCCcchhHH-------HhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 122333444 4455555566777777764332 23466677777788999999999999999863
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
+.....++.+|.+....++++.|.+.|..++.+ .|+...+|+|++..|...++-.+|...++
T Consensus 516 ----------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 516 ----------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred ----------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 334567899999999999999999999998875 57778899999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 305 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 305 (395)
++++. +.....++.|.-.+....|.+++|++.+.+.+.+.+...
T Consensus 578 EAlKc--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 578 EALKC--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHhhc--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 99883 234445666777788899999999999999988876544
No 121
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.24 E-value=1.6e-08 Score=79.81 Aligned_cols=188 Identities=12% Similarity=0.063 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+..++..|..+...|+|++|+..|++.+... +.++....+...+|.+++..+++++|+..+++.+.. .|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 34557788999999999999999999998863 455777788899999999999999999999999987 46
Q ss_pred CChhhhhhHHhHHHHHHHcC---------------C---hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC
Q 016114 96 ESADLVLPLFSLGSLFIKEG---------------K---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 157 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 157 (395)
++|....+++.+|.++...+ + ..+|...|++.++.+ |+++-.
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya--------------- 160 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT--------------- 160 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH---------------
Confidence 78888999999998865543 1 124445555555442 122222
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114 158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 237 (395)
Q Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 237 (395)
.+|...+..+.... +.--..+|..|.+.|+|..|+.-++.+++-. ++.+....++..++.
T Consensus 161 --~~A~~rl~~l~~~l-------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ 220 (243)
T PRK10866 161 --TDATKRLVFLKDRL-------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMEN 220 (243)
T ss_pred --HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHH
Confidence 22222222222211 1122467888888888888888888877754 345667778888888
Q ss_pred HHHhhhcHHHHHHHHH
Q 016114 238 SYSRSKNFVEAERLLR 253 (395)
Q Consensus 238 ~~~~~~~~~~A~~~~~ 253 (395)
.|...|..++|.....
T Consensus 221 ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 221 AYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHcCChHHHHHHHH
Confidence 8888888888877654
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.24 E-value=6.4e-10 Score=78.61 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
++..+..+.+|..++..|++++|...|+-...+ +|.....+++||.++..+|++.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 677788999999999999999999999988776 6888899999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
+|+....+.++|.++...|+.+.|.+.|+.++..+.
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 345557899999999999999999999999999873
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.24 E-value=2.9e-08 Score=78.29 Aligned_cols=187 Identities=10% Similarity=-0.022 Sum_probs=131.2
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
.....+..|..+...|++++|+..|++.+... +..+....+...+|.++...+++++|+..+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~------- 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL------- 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Confidence 34557778889999999999999999998863 455667778899999999999999999999999985
Q ss_pred CCCchHHHHHHHHHHHHHHHcC---------------Ch---HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh
Q 016114 180 SLDDSIMENMRIDLAELLHIVG---------------RG---QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 241 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 241 (395)
.|+++....++..+|.++...+ +. .+|+..+++.++.+ |+.+..
T Consensus 99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya------------- 160 (243)
T PRK10866 99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT------------- 160 (243)
T ss_pred CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH-------------
Confidence 4666777778888888764443 11 23445555544432 122211
Q ss_pred hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114 242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS 321 (395)
Q Consensus 242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 321 (395)
.+|...+...... .+.--..+|..|.+.|.+..|+.-++.+++-+ |+.+...+++..+..
T Consensus 161 ----~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ 220 (243)
T PRK10866 161 ----TDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMEN 220 (243)
T ss_pred ----HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHH
Confidence 2222211111111 11122467888888899988988888888766 677778888889999
Q ss_pred HHHHcCCchhHHHHHH
Q 016114 322 IQTRLGEDDTKLLELL 337 (395)
Q Consensus 322 ~~~~~~~~~~~A~~~~ 337 (395)
.|...|..+ +|....
T Consensus 221 ay~~lg~~~-~a~~~~ 235 (243)
T PRK10866 221 AYRQLQLNA-QADKVA 235 (243)
T ss_pred HHHHcCChH-HHHHHH
Confidence 999999887 666544
No 124
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=1.7e-09 Score=80.93 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
...+..+..+|.++...|++++|+..+++++.+. +++.....++.++|.++...|++++|+..+++++.+.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-- 102 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-- 102 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3456788999999999999999999999999863 2334445678999999999999999999999999862
Q ss_pred hhCCCChhHHHHHHHHHHHHH-------hhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114 220 YKGKEHPSFVTHLLNLAASYS-------RSKNFVEAERLLRICLDIMTKTVGPDDQSIS 271 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~la~~~~-------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 271 (395)
|.....+.++|.++. ..|++++|...+.+++..+++..+.+++...
T Consensus 103 ------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 103 ------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred ------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 222334445555555 8999999999999999988888777664443
No 125
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.6e-07 Score=70.53 Aligned_cols=226 Identities=15% Similarity=0.113 Sum_probs=164.9
Q ss_pred cChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 53 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 132 (395)
Q Consensus 53 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 132 (395)
++....+..+..-+.+|....+|++|...+.++.+..+... .....+.++-..+.+......+.++..+++++..++.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44445566677778888899999999999999998776532 3445567788888889999999999999999999988
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
.. ..|+.+..-...+--.....++++|+.+|++++.+.... .........+...++++.+..++++|-..+.+
T Consensus 103 E~---GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 103 EC---GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred Hh---CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 76 355555444455555677889999999999999998752 33444456667889999999999999988887
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114 213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 292 (395)
Q Consensus 213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 292 (395)
-..+..... ..+.....+.....+|....++..|..+++...++ .+-..++...++.+|-.. +..|+.++..+
T Consensus 176 e~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~a-yd~gD~E~~~k 248 (308)
T KOG1585|consen 176 EGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTA-YDEGDIEEIKK 248 (308)
T ss_pred hhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHH-hccCCHHHHHH
Confidence 766655543 23344445556667778888999999999876553 222344555666666544 45678777655
Q ss_pred HH
Q 016114 293 LV 294 (395)
Q Consensus 293 ~~ 294 (395)
.+
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
No 126
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=1.2e-07 Score=81.10 Aligned_cols=317 Identities=12% Similarity=0.057 Sum_probs=207.8
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHH
Q 016114 26 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 105 (395)
Q Consensus 26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 105 (395)
+-+..|+..+-+..|.+|+.......... .....+..+|..|...|+.+.|...|+++...- -+.-.+.+.++.
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~G--s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVG--SPGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWC 429 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCC--ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHH
Confidence 33456888899999999987653322222 234567889999999999999999999998751 122345678888
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHHHHHH----HhCCCChh------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 106 SLGSLFIKEGKAVDAESVFSRILKIYTK----VYGENDGR------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.-|..-....+++.|..+.++|...-.. .+....|. ...++...+......|-++.....|++.+++--.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 8898888999999999999988754221 11122232 2334556677777788888888888888886432
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH---HHHHHhhhcHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL---AASYSRSKNFVEAERLL 252 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---a~~~~~~~~~~~A~~~~ 252 (395)
.| .+..|.|..+....-++++.+.|++.+.++ ..|.....|+.. ..--...-..+.|..+|
T Consensus 510 -------TP---qii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 510 -------TP---QIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred -------CH---HHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 22 334778888888888999999999988875 234444444432 22222334789999999
Q ss_pred HHHHHHHHHhhCCCCcchHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH--HHHHHHHcCCc
Q 016114 253 RICLDIMTKTVGPDDQSISFP-MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC--LVSIQTRLGED 329 (395)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~ 329 (395)
+++++. ..|..+.+ +...|.+-..-|--..|+..|++|-.. .++.....+++ +..+....|=
T Consensus 574 EqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-------v~~a~~l~myni~I~kaae~yGv- 638 (835)
T KOG2047|consen 574 EQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-------VKEAQRLDMYNIYIKKAAEIYGV- 638 (835)
T ss_pred HHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHHhCC-
Confidence 999983 23444443 334455555667777777777776442 22222111111 3333334442
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 330 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 330 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
. .-.+.|++|++.. .+..........|.+-.+.|..+.|...|....++.
T Consensus 639 ~-~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 639 P-RTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred c-ccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 2 4567888888763 223445566677888888888888888877665543
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=4.2e-09 Score=90.96 Aligned_cols=226 Identities=18% Similarity=0.169 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
........++..+...|-..+|...|++. ..+.....||...|+..+|.....+-++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le------- 452 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE------- 452 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc-------
Confidence 34455667889999999999998888764 2344567788889999999888776554
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.+.....|..+|.+... -.+|+++.++.+.. .+.+...+|......++|+++.+.++.++++
T Consensus 453 --k~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~---------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~ 514 (777)
T KOG1128|consen 453 --KDPDPRLYCLLGDVLHD-------PSLYEKAWELSNYI---------SARAQRSLALLILSNKDFSEADKHLERSLEI 514 (777)
T ss_pred --CCCcchhHHHhhhhccC-------hHHHHHHHHHhhhh---------hHHHHHhhccccccchhHHHHHHHHHHHhhc
Confidence 23333455556555544 45555555554321 1234456777777789999999999999986
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114 217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 296 (395)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 296 (395)
+|....+|+.+|.+..+.++++.|.+.|...+. -.|+...+|.+++..|...|+-.+|...+++
T Consensus 515 --------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 515 --------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred --------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 466678899999999999999999999999887 3678889999999999999999999999999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114 297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 348 (395)
Q Consensus 297 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 348 (395)
|++.- ..++. .+.+.-.+....|.++ .|+..+.+.+.+.+...
T Consensus 579 AlKcn-----~~~w~---iWENymlvsvdvge~e-da~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 579 ALKCN-----YQHWQ---IWENYMLVSVDVGEFE-DAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HhhcC-----CCCCe---eeechhhhhhhcccHH-HHHHHHHHHHHhhhhcc
Confidence 98853 23333 4555566778899999 99999999998877654
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=1.8e-09 Score=77.89 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
+|........+|..+...|++++|...+++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3445677889999999999999999999998875 4566788999999999999999999999999876
Q ss_pred hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
+|.....+..+|.++...|++++|+..++++++..
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35556778999999999999999999999999864
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.19 E-value=7.7e-09 Score=75.13 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=98.7
Q ss_pred HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHH
Q 016114 113 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 192 (395)
Q Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 192 (395)
..++...+...+++.+.- .++.+....+...+|.++...|++++|...|+.++.. .+++.....+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR 90 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence 577888877777776654 3445556778889999999999999999999999884 3455666667788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
+|.++...|++++|+..++.. +..+........+|.++...|++++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999998652 1334455677789999999999999999999874
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=1.6e-09 Score=78.10 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=92.7
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114 7 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 86 (395)
Q Consensus 7 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 86 (395)
+..-..+|........+|..+...|++++|...+++++... |....++..+|.++...|++++|...+++++
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777888999999999999999999999988752 3345678899999999999999999999988
Q ss_pred HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
.. .|.....+..+|.++...|++++|+..++++++.
T Consensus 79 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 79 AL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred hc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 75 4666788899999999999999999999999987
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.17 E-value=9.1e-09 Score=74.76 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
.+.........++...+...+++.+.- .++++....+...+|.++...|++++|...|+.++.. .+++..
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l 83 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPEL 83 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHH
Confidence 334444444688888887777766653 3455667788889999999999999999999999875 234445
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
...+...++.++...|++++|+..++.. ++.+........+|.++...|++++|...|++++
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5667889999999999999999998652 2344556678889999999999999999999874
No 132
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.17 E-value=4.1e-09 Score=79.15 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
..+..+..++.+|..+...|++++|+.+|++++.... +.+....++..+|.++...|++++|+..+++++..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 4566778889999999999999999999999998643 23345678999999999999999999999999986
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHhC
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~ 136 (395)
.|.....+..+|.++...|+ ++.|+..+.++++.+++...
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777888877655 56666666777666665543
No 133
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.3e-07 Score=71.06 Aligned_cols=228 Identities=12% Similarity=0.079 Sum_probs=163.4
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
..++....+..|..-+..|....+|++|...+.++.+-.+.. ...-..+.++-..+........+.++..+++++..+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345566677888899999999999999999999999876553 222355677778888888999999999999999999
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 168 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 168 (395)
+.+.. .|+.+..-..-+--....-++++|+.+|++++.+.+.. .........+...+.++....++++|-..+.+
T Consensus 101 Y~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 101 YVECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 88764 44444433344444556778999999999999998652 22223455677888999999999999998888
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114 169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248 (395)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 248 (395)
-..+..+. ...+.....+.....+|....+|..|..+++..-++ .+...++...++.+|-..| ..|+.++.
T Consensus 176 e~~~~~~~----~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 176 EGVAADKC----DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred hhhHHHHH----hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 76665543 122222333444555667777999999999886554 2234556667777776655 45777766
Q ss_pred HHHH
Q 016114 249 ERLL 252 (395)
Q Consensus 249 ~~~~ 252 (395)
...+
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5544
No 134
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.2e-06 Score=72.59 Aligned_cols=354 Identities=12% Similarity=0.069 Sum_probs=225.7
Q ss_pred HHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHhcC
Q 016114 17 DAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRG 94 (395)
Q Consensus 17 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~ 94 (395)
+.....+|.+. ....+++.|...++++..+.+.... -......+...++.+|.... .+..+...+++++++.+..
T Consensus 46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~-fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~-- 122 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPS-FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV-- 122 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccccc-HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC--
Confidence 45556777664 4678999999999999998876522 22355677788899888877 8889999999999875432
Q ss_pred CCChhhhhhHHhHHHHHHHcCChHHHHHHHHH----------------------------------------HHHHHHH-
Q 016114 95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSR----------------------------------------ILKIYTK- 133 (395)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------------------------------al~~~~~- 133 (395)
..........|+.++.-..++..|.+.+.- +-.+.+.
T Consensus 123 --p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~ 200 (629)
T KOG2300|consen 123 --PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNI 200 (629)
T ss_pred --chhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcc
Confidence 122233444455555555555544443211 1000000
Q ss_pred -------------------------------------------------------HhCCCChhHHH--------HHHHHH
Q 016114 134 -------------------------------------------------------VYGENDGRVGM--------AMCSLA 150 (395)
Q Consensus 134 -------------------------------------------------------~~~~~~~~~~~--------~~~~la 150 (395)
++|.+.+.... ++..+-
T Consensus 201 ~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~ 280 (629)
T KOG2300|consen 201 SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLV 280 (629)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhh
Confidence 01111221111 111111
Q ss_pred HH--HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114 151 HA--KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM----ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 151 ~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (395)
.+ -.-.|-+++|.++-++++....+....+...+.+ ...+.++..+-.-.|++.+|++-...+.+.+.+..++.
T Consensus 281 tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~ 360 (629)
T KOG2300|consen 281 TVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL 360 (629)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH
Confidence 11 1235678889999999888776652222122221 22345567777788999999999999888877654321
Q ss_pred --ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114 225 --HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 225 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 302 (395)
....+.....+|......+.++.|+..|..+.+...+. .-.+.+-.++|.+|...|+-+.-.+.+ +..
T Consensus 361 Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~l----d~i- 430 (629)
T KOG2300|consen 361 LLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKAL----DLI- 430 (629)
T ss_pred HHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHH----Hhc-
Confidence 12244556677887888899999999999998854332 124556678999999988865543333 221
Q ss_pred HHcCCCC-------hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhh
Q 016114 303 IAFGKDS-------LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK 375 (395)
Q Consensus 303 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 375 (395)
++.+ ...+.+++.-|.....++++. +|..++.+.+++... .....-..-.+..|+.+....|+..++
T Consensus 431 ---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~ln-EaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 431 ---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLN-EAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2221 122445666777788899999 999999999988632 122233455677889999999999999
Q ss_pred chhhHHHHHHHHHHHh
Q 016114 376 FPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 376 ~~~~~~a~~~~~~~~~ 391 (395)
....+-++++.+++..
T Consensus 505 ~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 505 RNMVRPAMQLAKKIPD 520 (629)
T ss_pred HhccchHHHHHhcCCC
Confidence 9999999988887643
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=9e-10 Score=85.24 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
....+..+-.-|.-....++|.+|+..|.+|+.+ +|..+..+.+.+.+|.++|.++.|++-++.++.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4456777888999999999999999999999997 3445667889999999999999999999999997
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
+|....+|..||.+|..+|++.+|++.|++++++
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 7889999999999999999999999999999987
No 136
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1.8e-08 Score=77.92 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=156.1
Q ss_pred HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114 70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 149 (395)
Q Consensus 70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 149 (395)
....+|.+|++++..-.+ ..|.....+..+|.||....+|..|.++|++.-.. .|........-
T Consensus 21 I~d~ry~DaI~~l~s~~E--------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE--------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 456677788777654433 35556677889999999999999999999987654 67766677778
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114 150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 229 (395)
Q Consensus 150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (395)
+..++..+.+.+|+.......+ ++.....+...-+.+.+..+++..+..+.++. . ....+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D----------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p---~en~A 144 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLD----------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------P---SENEA 144 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcC----------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------c---CCCcc
Confidence 8889999999999887765432 23334445455566777788887777665542 1 12345
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc----
Q 016114 230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF---- 305 (395)
Q Consensus 230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 305 (395)
....+.|.+..+.|+++.|.+-|+.+++. ++..|.. -++++.++++.|+++.|+++..+.++.-.+..
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpll---AYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLL---AYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhh-----cCCCchh---HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 67788999999999999999999999883 3344443 36889999999999999999888876543211
Q ss_pred ------CCCC-----h------HHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 306 ------GKDS-----L------PVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 306 ------~~~~-----~------~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
+++. + ...++++.-+-++.+.++++ .|.+.+
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e-AA~eaL 264 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE-AAQEAL 264 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH-HHHHHh
Confidence 0110 0 11334445566777888877 665443
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.9e-07 Score=69.69 Aligned_cols=192 Identities=19% Similarity=0.120 Sum_probs=139.3
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 016114 74 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 153 (395)
Q Consensus 74 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 153 (395)
+.++-.++....+.....- ...++....+-.+..+....|+.+-|..++.+....+ ++++ .+...-|..+
T Consensus 27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S~---RV~~lkam~l 96 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-----PGSK---RVGKLKAMLL 96 (289)
T ss_pred CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCCh---hHHHHHHHHH
Confidence 4455555555555443332 1234455566677777888999999999988766543 2333 3445567888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH
Q 016114 154 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 233 (395)
Q Consensus 154 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 233 (395)
...|++++|+++|+..++ ++|.-..++-..-.+...+|+.-+|++.+..-++.+ +....+|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~----------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~ 158 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLE----------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWH 158 (289)
T ss_pred HHhhchhhHHHHHHHHhc----------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHH
Confidence 999999999999999876 222223344455556677899889999888887764 33457899
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHH
Q 016114 234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEALYIR 301 (395)
Q Consensus 234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 301 (395)
.++.+|...|+|++|.-++++.+- ..|.....+..+|.+++-+| +..-|.++|.+++++.
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll--------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLL--------IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999886 35666677788898888776 4667899999999865
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2.5e-07 Score=70.05 Aligned_cols=194 Identities=19% Similarity=0.110 Sum_probs=145.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114 29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 108 (395)
Q Consensus 29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 108 (395)
...+.++-++++.+.+.-.... .-.++....+-.+..+....|+.+.|..++.+....+ |....+...-|
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lka 93 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKA 93 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHH
Confidence 3456777788887777665543 1223555667777788888999999999888765542 33445555668
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Q 016114 109 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 188 (395)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (395)
..+...|++++|+++|+..++ ++|....++..--.+...+|+.-+|++.+..-++.+-. | ..
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D----~E 155 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------D----QE 155 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------c----HH
Confidence 888999999999999998775 34554455555555677889989999999988887532 2 35
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHH
Q 016114 189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDI 258 (395)
Q Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~ 258 (395)
+|..++.+|...|+|++|.-++++.+-+ .|.....+..+|.++..+| +..-|.++|.+++++
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999998764 4556667777888877665 677899999999985
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=5.1e-09 Score=73.67 Aligned_cols=103 Identities=13% Similarity=0.174 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
..++.+|..+...|++++|+..|.+++... ++++....+++.+|.++...|++++|+..+++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 567899999999999999999999998752 344455677889999999999999999999999876 2344
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
+....++..+|.++...|++++|..++.+++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 556778999999999999999999999999987
No 140
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=1.8e-08 Score=81.52 Aligned_cols=261 Identities=15% Similarity=0.107 Sum_probs=155.3
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHH
Q 016114 26 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 105 (395)
Q Consensus 26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 105 (395)
-++..|+|..++.-++ +. ..+.+........+.+++..+|+++..+.-.. ...+|. ..+..
T Consensus 10 n~fy~G~Y~~~i~e~~--~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~----------~~~~~~-l~av~ 70 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS--LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIK----------KSSSPE-LQAVR 70 (290)
T ss_dssp HHHCTT-HHHHCHHHH--CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-----------TTSSCC-CHHHH
T ss_pred HHHHhhhHHHHHHHhh--cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhc----------cCCChh-HHHHH
Confidence 4556899988886555 11 12334556667778899999998876553221 112232 33445
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114 106 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184 (395)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 184 (395)
.++..+...++-+.++.-++..+ ..... .........|.++...|++++|++.+.+. ..
T Consensus 71 ~la~y~~~~~~~e~~l~~l~~~~-------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~- 130 (290)
T PF04733_consen 71 LLAEYLSSPSDKESALEELKELL-------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GS- 130 (290)
T ss_dssp HHHHHHCTSTTHHCHHHHHHHCC-------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TC-
T ss_pred HHHHHHhCccchHHHHHHHHHHH-------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------Cc-
Confidence 55555544344444433332221 11111 22334556678888899999998887653 11
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHh
Q 016114 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--NFVEAERLLRICLDIMTKT 262 (395)
Q Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~ 262 (395)
..+......++...++++.|.+.++...++ ..+...+....+++....| ++.+|...|++..+
T Consensus 131 --lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----- 195 (290)
T PF04733_consen 131 --LELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----- 195 (290)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-----
T ss_pred --ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-----
Confidence 122344667899999999999888775432 1222222223334444445 58889888887543
Q ss_pred hCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114 263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 342 (395)
Q Consensus 263 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 342 (395)
..+.....+..++.++..+|++++|...+++++.. .|....++.+++.+....|+..+.+.+++.+...
T Consensus 196 ---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 196 ---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp ---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred ---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 23456677889999999999999999999998752 2344567889999999999985255556655443
Q ss_pred HHHhccCCCCHHHH
Q 016114 343 IQEREFGSESEEVM 356 (395)
Q Consensus 343 ~~~~~~~~~~~~~~ 356 (395)
. .|.||...
T Consensus 265 ~-----~p~h~~~~ 273 (290)
T PF04733_consen 265 S-----NPNHPLVK 273 (290)
T ss_dssp H-----TTTSHHHH
T ss_pred h-----CCCChHHH
Confidence 2 35666543
No 141
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=3.4e-06 Score=69.96 Aligned_cols=323 Identities=12% Similarity=0.047 Sum_probs=179.9
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
+..-|..-..++++..|.+.|++|+.. + ......+...+.+-........|...+.+|+.+. |.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdv-------d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--------PR 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDV-------D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--------PR 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc-------c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--------ch
Confidence 444455555666666777777776653 3 2445567778888888899999999999998874 44
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
+-..++....+-..+|+...|...|++-++. .|+. .++......-...+..+.|...|++-+-.
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~~------- 203 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVLV------- 203 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHhee-------
Confidence 4556666666667788888888888877654 1111 22333333333444455555555544321
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
. |. ...+...+..-.+.|+..-|...|+.|++.... .......+...|..-..+..++.|.-+|+-|++..
T Consensus 204 H---P~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 204 H---PK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred c---cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 122334444555555555555555555544311 11122223333333344444444444443333211
Q ss_pred ---------------HHhhC---------------------CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114 260 ---------------TKTVG---------------------PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 260 ---------------~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 303 (395)
++.+| ..+|....++...-.+-...|+.+.-.+.|++|+.-...
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 01111 234666667777777778889999999999999863211
Q ss_pred HcCCCChHHHHHHHHHHHHH---HHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhH
Q 016114 304 AFGKDSLPVGEALDCLVSIQ---TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK 380 (395)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 380 (395)
... .....--++..+-.++ ....+.+ .+.+.|+.++++. ...+-..+.++...|....++.+...|...+-
T Consensus 355 ~~e-kr~W~RYIYLWinYalyeEle~ed~e-rtr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG 428 (677)
T KOG1915|consen 355 ASE-KRYWRRYIYLWINYALYEELEAEDVE-RTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILG 428 (677)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 000 0000011122222221 2345666 8888999988763 33445566667777777777777777777777
Q ss_pred HHHHHHHHH
Q 016114 381 RLSNLRMKY 389 (395)
Q Consensus 381 ~a~~~~~~~ 389 (395)
.|+..+|+.
T Consensus 429 ~AIG~cPK~ 437 (677)
T KOG1915|consen 429 NAIGKCPKD 437 (677)
T ss_pred HHhccCCch
Confidence 776655543
No 142
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=3.7e-06 Score=69.78 Aligned_cols=221 Identities=15% Similarity=0.097 Sum_probs=151.5
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH---HHHcCChHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL---LHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~ 215 (395)
+|....++...-.+-...|+.+.-.+.|++|+...... .......-.+|..+-.+ -....+.+.+.++|+.+++
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~---~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA---SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch---hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555677777777788899999999999998742110 00011111122222222 2345788999999999998
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114 216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 295 (395)
+. +..+...+..+...|....++.+...|...+-.|+..+ | ..........+-...++++....+|+
T Consensus 395 lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--------P-K~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 395 LI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--------P-KDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred hc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--------C-chhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 64 23445667788888888899999999999888887632 1 11233445566677889999999998
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhh
Q 016114 296 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK 375 (395)
Q Consensus 296 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 375 (395)
+-++. .|....++...|.+-..+|+.+ .|...|+-|++-- ..+-|. ..+......-...|.++.|
T Consensus 462 kfle~--------~Pe~c~~W~kyaElE~~Lgdtd-RaRaifelAi~qp----~ldmpe--llwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 462 KFLEF--------SPENCYAWSKYAELETSLGDTD-RARAIFELAISQP----ALDMPE--LLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhc--------ChHhhHHHHHHHHHHHHhhhHH-HHHHHHHHHhcCc----ccccHH--HHHHHhhhhhhhcchHHHH
Confidence 88763 3777778888999999999999 8999998887421 112232 2344445566678999999
Q ss_pred chhhHHHHHHHHHHH
Q 016114 376 FPLKKRLSNLRMKYK 390 (395)
Q Consensus 376 ~~~~~~a~~~~~~~~ 390 (395)
..+|++.++..+..+
T Consensus 527 R~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 527 RALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHHHhcccch
Confidence 999999887665443
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.08 E-value=7.3e-09 Score=72.90 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
..++.+|..+...|++++|+..+.+++.. .++++....+++.+|.++...|++++|..++++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 45778899999999999999999999875 23445556788999999999999999999999998762 445
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
+....++..+|.++...|++++|..+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5556788999999999999999999999999863
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.08 E-value=2.1e-08 Score=75.35 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=89.2
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 261 (395)
..+.....+.++|..+...|++++|+.++++++.... +.+....++.++|.++...|++++|+..+++++..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 3455566789999999999999999999999988642 23344678899999999999999999999999984
Q ss_pred hhCCCCcchHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHHcCCCC
Q 016114 262 TVGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDS 309 (395)
Q Consensus 262 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~ 309 (395)
.|.....+..+|.++...|+ ++.|...++++++........++
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 35556677788888877655 66677777777776666554443
No 145
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.06 E-value=4.2e-06 Score=74.95 Aligned_cols=341 Identities=13% Similarity=0.036 Sum_probs=203.4
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
++.....+..-+..+...|..++|+.+.-.| .+....+..+.+.+.-....++..--....+..
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA---------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l------- 406 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAA---------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL------- 406 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhC---------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-------
Confidence 4455667777888888999999998776543 222344444555566666666554333222211
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG-ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
+.+--...+......++......++.+|..+..++......... ......+......|.+....|++++|+++.+.++.
T Consensus 407 P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 407 PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 00000112233445577788899999999999888765433100 01112344445567788899999999999999998
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251 (395)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 251 (395)
.... ........++..+|.+..-.|++++|..+..++.++.+... .......+....+.++..+|+...|..
T Consensus 487 ~L~~-----~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~- 558 (894)
T COG2909 487 QLPE-----AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQ- 558 (894)
T ss_pred hccc-----ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHH-
Confidence 7643 23333455678899999999999999999999999887653 233445566677889999994333322
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114 252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 331 (395)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (395)
..+............+.........+.++...-+++.+..-....++...... +......-.+..|+.+....|+.+
T Consensus 559 -~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~- 635 (894)
T COG2909 559 -EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLD- 635 (894)
T ss_pred -HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHH-
Confidence 22222222222222222222222223333333336666666666665543321 222222233458999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHH-HHHHHHHHHHHhcchhhhchhhHHH
Q 016114 332 KLLELLKRVLRIQEREFGSESEEVML-TLKKVVSYLDKLGRKEEKFPLKKRL 382 (395)
Q Consensus 332 ~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a 382 (395)
+|.....+.......-- .+++... +..........+|+.++|.....+.
T Consensus 636 ~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 636 KALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999998887765521 2333322 2222333445578888877776653
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1.1e-08 Score=79.34 Aligned_cols=101 Identities=29% Similarity=0.257 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
...++.+-.-|.-....++|.+|+..|.+|+.+ .|..+..|.+.+.+|.++|.++.|++-++.++.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----- 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence 345667777888899999999999999999997 6777888999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
+|....+|..||.+|..+|++++|++.|++++++
T Consensus 145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 7888999999999999999999999999999995
No 147
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=5.7e-07 Score=79.39 Aligned_cols=258 Identities=15% Similarity=0.109 Sum_probs=157.9
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 145 (395)
+.....+|-.++|..+|.+.-.. -.|-.+|...|.+++|.+..+. .+....-.+
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~----------------DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~T 860 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY----------------DLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNT 860 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH----------------HHHHHHHHhcccHHHHHHHHhh----------ccceehhhh
Confidence 44555677777777777765432 2344566677777777655432 244556678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----HHHhcccCCCCchHH---------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALR----VIKDSNYMSLDDSIM---------ENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
|++.|.-+...++.+.|+++|+++-. +.+-. ..+++.+ ...|...|......|+.+.|+.+|..
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL---~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML---KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH---HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999999999999998522 11110 0111110 13445678888888888888888887
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114 213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 292 (395)
Q Consensus 213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 292 (395)
|-+ ++.+..+.+-+|+.++|..+.++.-+ ..+.+.||+.|...|++.+|+.
T Consensus 938 A~D----------------~fs~VrI~C~qGk~~kAa~iA~esgd-------------~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 938 AKD----------------YFSMVRIKCIQGKTDKAARIAEESGD-------------KAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred hhh----------------hhhheeeEeeccCchHHHHHHHhccc-------------HHHHHHHHHHhhhhHHHHHHHH
Confidence 643 34556677778888888776554321 2356789999999999999999
Q ss_pred HHHHHHHHHHHH--cCCCCh-HHH---------HHHHHHHHHHHHcC-CchhHHHHHHHHH------HH-----------
Q 016114 293 LVLEALYIREIA--FGKDSL-PVG---------EALDCLVSIQTRLG-EDDTKLLELLKRV------LR----------- 342 (395)
Q Consensus 293 ~~~~al~~~~~~--~~~~~~-~~~---------~~~~~l~~~~~~~~-~~~~~A~~~~~~a------l~----------- 342 (395)
.|.+|-.....+ ...+.. +.. .-+...+..|...| ... .|..+|.+| ++
T Consensus 989 FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 989 FFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH-KAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh-HHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 998865432111 111111 110 01223345555555 444 666665543 22
Q ss_pred -HHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114 343 -IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 384 (395)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 384 (395)
+..+-+.+.. .+..+..-+..+....+|++|..++-.+..
T Consensus 1068 ~lIa~DLd~~s--Dp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1068 DLIAKDLDAGS--DPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHhcCCCC--CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2222222221 235567778888899999999877544433
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=1.1e-08 Score=82.83 Aligned_cols=241 Identities=16% Similarity=0.118 Sum_probs=145.4
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
.+++........+.+.+..+|+++..+.-... ..+|. ..+...++..+...++-+.++.-++..+
T Consensus 29 ~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~la~y~~~~~~~e~~l~~l~~~~---- 93 (290)
T PF04733_consen 29 FSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRLLAEYLSSPSDKESALEELKELL---- 93 (290)
T ss_dssp STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHHHHHHHCTSTTHHCHHHHHHHCC----
T ss_pred CCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHHHHHHHhCccchHHHHHHHHHHH----
Confidence 34445556667788889999988765533211 11221 2334455655554344444433322211
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
.....+.........|.++...|++++|++.+.+. ++ .........++...++++.|.+.++.+.
T Consensus 94 --~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 94 --ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------GS---LELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp --CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------TC---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------Cc---ccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11112122344556678888899999998887653 12 2344556778999999999998887764
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114 171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248 (395)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 248 (395)
++ . ++..+.. ...+.+....| ++.+|...|++..+ ..+.....++.++.+++.+|++++|
T Consensus 159 ~~-------~-eD~~l~q--La~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 159 QI-------D-EDSILTQ--LAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp CC-------S-CCHHHHH--HHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred hc-------C-CcHHHHH--HHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 42 2 2222222 22333444444 68999999988532 2234556788999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHcCCCChHH
Q 016114 249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALYIREIAFGKDSLPV 312 (395)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~ 312 (395)
...+++++. .+|....++.+++.+....|+. +.+.+++.+.... .|+||.+
T Consensus 221 e~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~p~h~~~ 272 (290)
T PF04733_consen 221 EELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----NPNHPLV 272 (290)
T ss_dssp HHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----TTTSHHH
T ss_pred HHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----CCCChHH
Confidence 999998875 3466677889999999999998 4555566554432 3677654
No 149
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.4e-06 Score=72.29 Aligned_cols=255 Identities=15% Similarity=0.046 Sum_probs=178.8
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCcC--hH----HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC--Chhh
Q 016114 29 TLENYEKSMLVYQRVINVLESRYGKT--SI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE--SADL 100 (395)
Q Consensus 29 ~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~ 100 (395)
..|-+++|.++-++++...++....+ .+ .....+-.+..+-...|++.+|++....+.+.+.+..++. ....
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 56888999999999998877654433 11 1233445566777788999999999999998887754311 1223
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc-cC
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-YM 179 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~ 179 (395)
+...+.+|......+.++.|+..|..|.+...+. ...+.+..++|.+|...|+-+.-.+.+ +.....+ ..
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~l----d~i~p~nt~s 437 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKAL----DLIGPLNTNS 437 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHH----HhcCCCCCCc
Confidence 5567778888889999999999999999875432 235566778999999988765543333 3221100 00
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
.......+.+++..|...+.++++.+|...+.+.+++..... ...-.+-.+..|+.+....|+..++.+...-++++.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 001123455666778888899999999999999998863221 233455667788999999999999999999999988
Q ss_pred HHhhCCCCcchHHHHHHHHHHHHhcCC--hHHHHHHHHH
Q 016114 260 TKTVGPDDQSISFPMLHLGITLYHLNR--DKEAEKLVLE 296 (395)
Q Consensus 260 ~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 296 (395)
++. ++.+...+....+-.++...|+ .+...+.+..
T Consensus 516 kKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 516 KKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 877 5666666666667777888887 4444444443
No 150
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.02 E-value=2.1e-08 Score=68.73 Aligned_cols=102 Identities=28% Similarity=0.317 Sum_probs=84.5
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
.+.+.+|.++...|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... |
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-------p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-------P 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------C
Confidence 46788999999999999999999999885 44566677899999999999999999999999988632 3
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
+++....+...++.++...|++++|+..+-.++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4333344556788999999999999999877664
No 151
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.99 E-value=2.2e-05 Score=71.49 Aligned_cols=319 Identities=13% Similarity=0.032 Sum_probs=208.6
Q ss_pred cChHHHHHHHHHHHHHHH-hhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 53 KTSILLVTSLLGMAKVLG-SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 53 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
..+...+.+...+|.++. ...+++.|+.++++++.+.++ . .-......+...++.++...+... |...+++.++..
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~-~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-H-RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c-chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 334466778889999887 789999999999999988765 1 112223455667788998888777 999999999987
Q ss_pred HHHhCCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114 132 TKVYGENDGRVGMAMCSL-AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 210 (395)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (395)
+.. .+.........+ .......+++..|.+.++......... .++.....+....+.+....+..+++++..
T Consensus 130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~----~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR----GDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 652 122222233333 333334489999999999999887532 455555555566677888888899999999
Q ss_pred HHHHHHHHhh--hCCCChhHHHHHHHHHH--HHHhhhcHHHHHHHHHHHHHHHHHhhCCC-------C------------
Q 016114 211 EECLLITEKY--KGKEHPSFVTHLLNLAA--SYSRSKNFVEAERLLRICLDIMTKTVGPD-------D------------ 267 (395)
Q Consensus 211 ~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~------------ 267 (395)
+++....... .+..++....++..+-. ++...|++..+...+++.-.......... +
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~ 282 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSS 282 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccc
Confidence 9997776644 11123334444444433 45567787777777665554443332111 0
Q ss_pred -----cc----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC---CCChH---------------HHH
Q 016114 268 -----QS----------ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG---KDSLP---------------VGE 314 (395)
Q Consensus 268 -----~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~---------------~~~ 314 (395)
+. .+-++..-|......|..++|.++++++++..++... ...+. ...
T Consensus 283 ~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~ 362 (608)
T PF10345_consen 283 NSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY 362 (608)
T ss_pred cCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence 00 0112233355566677778999999999999887651 11100 012
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhcchhhhchhhHHH
Q 016114 315 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS-ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 382 (395)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 382 (395)
....++.+..-.+++. .|....+.+.....+...+ ........++..|..+...|+.+.|...|.+.
T Consensus 363 ~~~y~~~~~~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~ 430 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWS-KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKP 430 (608)
T ss_pred HHHHHHHHHHHCcCHH-HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhh
Confidence 2344566667788888 8888888887766543221 12234567788899999999999999999843
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.96 E-value=3.9e-08 Score=67.39 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
.+++.+|.++-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... +++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999884 44556777899999999999999999999999987642 233
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 129 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (395)
+........++.++...|+.++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33555666788899999999999999887764
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.94 E-value=2.2e-08 Score=84.09 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
+...|...+..|+|++|+..|.+++.+. |....++..+|.++...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 4567889999999999999999999862 334567899999999999999999999999987 566
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
...+++.+|.++...|++++|+..|++++.+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7788999999999999999999999999987
No 154
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.93 E-value=3.7e-05 Score=70.11 Aligned_cols=357 Identities=11% Similarity=0.021 Sum_probs=222.5
Q ss_pred hcCCCcHHHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114 8 SLKDDEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 86 (395)
Q Consensus 8 ~l~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 86 (395)
.....+...+.+...+|.+++ ...+++.|..++++++.+.++ ..-......+...++.++...+... |...+++.+
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 333444456788899999988 788999999999999998765 2222344566677789998888877 999999999
Q ss_pred HHHHHhcCCCChhhhhhHHhH-HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHHHHH
Q 016114 87 TILELNRGTESADLVLPLFSL-GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVE 164 (395)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 164 (395)
+..+... +.....+...+ .......+++..|.+.++......... .++. ...+....+.+....+..+++++
T Consensus 127 ~~~~~~~---~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~ 200 (608)
T PF10345_consen 127 EDSETYG---HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLE 200 (608)
T ss_pred HHHhccC---chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 9876521 22222233333 333333489999999999998876542 2333 33344455677778888999999
Q ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhhhCCC-------C----------
Q 016114 165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAE--LLHIVGRGQEGRELLEECLLITEKYKGKE-------H---------- 225 (395)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~---------- 225 (395)
..+++..........+...+....++..+-. ++...|+++.+...+++.-.......... +
T Consensus 201 ~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~ 280 (608)
T PF10345_consen 201 LLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEG 280 (608)
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccc
Confidence 9999977766421011112222223333332 45567787777777665544433321110 0
Q ss_pred -------h----------hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC---CCCcc---------------h
Q 016114 226 -------P----------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG---PDDQS---------------I 270 (395)
Q Consensus 226 -------~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~---------------~ 270 (395)
+ -.+-++..-|......+..++|.+++++++...++... ...+. .
T Consensus 281 ~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~ 360 (608)
T PF10345_consen 281 SSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQ 360 (608)
T ss_pred cccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHH
Confidence 0 01122333355566677777999999999998887761 11111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK-DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 349 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 349 (395)
..+...++.+..-.|++..|....+.+.....+...+ ........++..|..+...|+.+ .|...|.+..-.......
T Consensus 361 ~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~-~A~~~y~~~~~~~~~~~~ 439 (608)
T PF10345_consen 361 CYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE-AALYQYQKPRFLLCEAAN 439 (608)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH-HHHHHHhhhHHhhhhhhc
Confidence 1233455667778899999999999888776543221 12233556777888899999999 999999855422222212
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhcchhh
Q 016114 350 ---SESEEVMLTLKKVVSYLDKLGRKEE 374 (395)
Q Consensus 350 ---~~~~~~~~~~~~la~~~~~~g~~~~ 374 (395)
....-..-+..++..++...+....
T Consensus 440 ~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 440 RKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred cCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 2223334455666777766655443
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=1.1e-08 Score=66.48 Aligned_cols=83 Identities=17% Similarity=0.283 Sum_probs=65.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114 30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 109 (395)
Q Consensus 30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 109 (395)
+|++++|+.+++++++..+. ++ ....+..+|.+++..|++++|+..+++ ... .+........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 68999999999999987422 22 445677799999999999999999988 333 2344566777899
Q ss_pred HHHHcCChHHHHHHHHHH
Q 016114 110 LFIKEGKAVDAESVFSRI 127 (395)
Q Consensus 110 ~~~~~g~~~~A~~~~~~a 127 (395)
++..+|++++|+..++++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 156
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=1.3e-07 Score=78.50 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 266 (395)
....+..+..++..|++++|+..++..+. +.|+....+...+.++...++..+|.+.+++++..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-------- 369 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-------- 369 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence 44567778888889999999998888655 35666677778899999999999999999999873
Q ss_pred CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 339 (395)
.|.......++|..+...|++.+|+..++..+. +.|+....|..|+..|..+|+.. +|...+.+
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~-~a~~A~AE 433 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRA-EALLARAE 433 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchH-HHHHHHHH
Confidence 455566778999999999999999888887765 33455567888999999999876 55444433
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.90 E-value=4.9e-08 Score=82.07 Aligned_cols=95 Identities=17% Similarity=0.080 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 141 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 141 (395)
+...|...+..|++++|+..|.+++.+ .|....++..+|.++...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 445688889999999999999999986 5566788999999999999999999999999987 455
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
...++..+|.++...|++++|+..|++++.+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999986
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.2e-07 Score=77.05 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH-------HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
.+.....-|+.++..|+|..|...|++++.........+.. ....++.+++.++..+++|.+|+..+.++|.+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34556778999999999999999999999987643322221 34667899999999999999999999999987
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH-HHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYK 167 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~ 167 (395)
.|....+++.-|.++..+|+++.|+..|++++++ .|..-.+...+..+-....++.+. .+.|.
T Consensus 287 --------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 287 --------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred --------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999987 333344555566655554444433 56666
Q ss_pred HHHHHH
Q 016114 168 KALRVI 173 (395)
Q Consensus 168 ~a~~~~ 173 (395)
.++...
T Consensus 351 ~mF~k~ 356 (397)
T KOG0543|consen 351 NMFAKL 356 (397)
T ss_pred HHhhcc
Confidence 666543
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.89 E-value=1.5e-08 Score=65.81 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=64.8
Q ss_pred hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114 72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 151 (395)
Q Consensus 72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 151 (395)
.|+++.|+.+++++++... ..+ ....+..+|.+++..|++++|+..+++ ... .+........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 6899999999999998731 122 455677799999999999999999998 333 2333456667799
Q ss_pred HHHHCCCHHHHHHHHHHH
Q 016114 152 AKCANGNAEEAVELYKKA 169 (395)
Q Consensus 152 ~~~~~g~~~~A~~~~~~a 169 (395)
++..+|++++|+..++++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 160
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.7e-06 Score=63.76 Aligned_cols=177 Identities=12% Similarity=0.081 Sum_probs=116.8
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 145 (395)
|+.|....+++.|-..|.++-++..+.. +..+.+.++...+.+|.+ ++..+|..+++++++++.... .-..-+..
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~ 115 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKH 115 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhh
Confidence 4445555566666666777666655543 334556666666666654 499999999999999987652 22334556
Q ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114 146 MCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 146 ~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (395)
+..+|.+|..- .++++|+.+|+++-+.++. .........++...+..-...++|.+|+..|++.....- +
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~----ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~-----~ 186 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKG----EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL-----D 186 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c
Confidence 67889998765 8999999999999998763 233344455667778888888999999999998765321 1
Q ss_pred Chh----HHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 225 HPS----FVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 225 ~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
++. .-..+..-|.+++-..+.-.+...+++-.
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~ 222 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQ 222 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHH
Confidence 221 12234445666666666655554444433
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.85 E-value=3e-08 Score=61.77 Aligned_cols=64 Identities=27% Similarity=0.451 Sum_probs=59.1
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRV 172 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 172 (395)
+.++..+|.++...|++++|+.+|.+++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567889999999999999999999999997 5667789999999999999 799999999999985
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=5.1e-08 Score=77.42 Aligned_cols=107 Identities=14% Similarity=0.035 Sum_probs=91.6
Q ss_pred HHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114 272 FPMLHLGITL-YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS 350 (395)
Q Consensus 272 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 350 (395)
...+..|..+ ...|++++|+..|+..+..+ |+++....+++.+|.+|...|+++ +|+..|++++..+ +
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~-~A~~~f~~vv~~y-----P 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKD-DAAYYFASVVKNY-----P 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHC-----C
Confidence 4556666655 56799999999999998876 666666788999999999999999 9999999999764 5
Q ss_pred CCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 351 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 351 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
+++....++..+|.++...|++++|...|+++++..++.
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 678889999999999999999999999999998876543
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=1.6e-07 Score=74.66 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=88.3
Q ss_pred HHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114 230 THLLNLAASY-SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 308 (395)
Q Consensus 230 ~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 308 (395)
...+..|..+ ...|++++|+..|+..+..+ ++++....+++.+|.+|...|++++|+..|++++..+ |+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445555544 56799999999999988743 4555667889999999999999999999999999876 78
Q ss_pred ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114 309 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 344 (395)
Q Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 344 (395)
++....++..+|.++...|+.+ +|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~-~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTA-KAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHC
Confidence 8888999999999999999999 9999999998764
No 164
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.83 E-value=4e-08 Score=61.18 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC-ChHHHHHHHHHHHHH
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI 130 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 130 (395)
+..+..+|.++...|++++|+..|.+++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 457889999999999999999999999997 5777889999999999999 799999999999986
No 165
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=4.8e-05 Score=63.73 Aligned_cols=152 Identities=20% Similarity=0.113 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
+....+.+..+..++..|++++|...++..+.. .|+++... ...+.++...|+..+|.+.+++++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-------~P~N~~~~---~~~~~i~~~~nk~~~A~e~~~kal~l--- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-------QPDNPYYL---ELAGDILLEANKAKEAIERLKKALAL--- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhc---
Confidence 344567788899999999999999999996653 35555543 55789999999999999999999885
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
.|.......++|..+.+.|++.+|+..++..+. +.|+....|..||..|..+|+..+|...
T Consensus 370 -----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A------ 430 (484)
T COG4783 370 -----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA------ 430 (484)
T ss_pred -----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH------
Confidence 344466778999999999999999999988765 5677788899999999999998776443
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 300 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
.+..+...|+++ +|+..+..+.+.
T Consensus 431 -------------------~AE~~~~~G~~~-~A~~~l~~A~~~ 454 (484)
T COG4783 431 -------------------RAEGYALAGRLE-QAIIFLMRASQQ 454 (484)
T ss_pred -------------------HHHHHHhCCCHH-HHHHHHHHHHHh
Confidence 344455678888 888888777654
No 166
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.80 E-value=1.7e-05 Score=69.80 Aligned_cols=210 Identities=14% Similarity=0.174 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHH------HHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQR------VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
..|-..|.+|.+..++++|+++|++ ++++.+-.++ ...+..--..|.-+...|+++.|+..|-++-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 4455667778888888899888765 4444433221 234444455677788889999998888665433222
Q ss_pred hc---C-C-------------CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 016114 92 NR---G-T-------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 154 (395)
Q Consensus 92 ~~---~-~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 154 (395)
+. + . +.......|-.++.-|...|+|+.|.++|.++-.. ..-..+|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~ 802 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG 802 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence 10 0 0 11111223445677778888888888887765221 12234677
Q ss_pred HCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHhhhCC-----
Q 016114 155 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKGK----- 223 (395)
Q Consensus 155 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~----- 223 (395)
+.|++.+|.++..+.. .+......|...+.-+-..|++.+|..+| .+++.++.+..-.
T Consensus 803 k~~kw~da~kla~e~~-----------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH-----------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred ccccHHHHHHHHHHhc-----------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence 7788888776655542 12233445556666667777777776665 3455544433211
Q ss_pred ----CCh-hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 224 ----EHP-SFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 224 ----~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.|+ ....+...+|.-+...|+...|...|-++-+
T Consensus 872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 122 2345667788888899999999988877654
No 167
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.3e-06 Score=64.13 Aligned_cols=203 Identities=13% Similarity=0.046 Sum_probs=126.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH
Q 016114 152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 231 (395)
Q Consensus 152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (395)
++...+++++|.++|.++-.+++ ...++..|-..|.++-+...+.. +..+.+.+
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yk------------------------laK~w~~AG~aflkaA~~h~k~~--skhDaat~ 76 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYK------------------------LAKNWSAAGDAFLKAADLHLKAG--SKHDAATT 76 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHH------------------------HHHhHHHHHHHHHHHHHHHHhcC--CchhHHHH
Confidence 33445678888888887766543 22344444445555544443332 22344555
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114 232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALYIREIAFGKDSL 310 (395)
Q Consensus 232 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~ 310 (395)
+...+.+|.+ +++++|..+++++++++.... .-...+..+..+|.+|..- .++++|+.+|+++-+.+..- ....
T Consensus 77 YveA~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~s 151 (288)
T KOG1586|consen 77 YVEAANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVS 151 (288)
T ss_pred HHHHHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhh
Confidence 6666666654 488888888888888876651 2222344556788888875 89999999999999887532 1112
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 311 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
..-..+...+..-...+++. +|+..|++.....- +++ ..-.-+..-|.++....+.-.+...+++-.++.
T Consensus 152 sANKC~lKvA~yaa~leqY~-~Ai~iyeqva~~s~-----~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYS-KAIDIYEQVARSSL-----DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-----cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 22345556677777888888 89999888764321 122 122334555666766677777777777766666
Q ss_pred HHHHh
Q 016114 387 MKYKQ 391 (395)
Q Consensus 387 ~~~~~ 391 (395)
|.+..
T Consensus 226 P~F~d 230 (288)
T KOG1586|consen 226 PAFTD 230 (288)
T ss_pred Ccccc
Confidence 65543
No 168
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=7.4e-06 Score=60.78 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=132.8
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114 10 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 89 (395)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 89 (395)
+-.+...+..++..|..|-..|-+.-|..-|.+++.+. |..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL- 128 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL- 128 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-
Confidence 34456678888899999999999999999999998873 556678888999999999999999999988886
Q ss_pred HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114 90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 169 (395)
+|..--+..+.|..+..-|++.-|.+-+.+-.+. .+++|-.. .+..+ -...-++.+|..-+.+-
T Consensus 129 -------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl---~E~k~dP~~A~tnL~qR 192 (297)
T COG4785 129 -------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYL---NEQKLDPKQAKTNLKQR 192 (297)
T ss_pred -------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHH---HHhhCCHHHHHHHHHHH
Confidence 5666667778888888889999988877665543 23344321 11111 12344666776544332
Q ss_pred HHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHH
Q 016114 170 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 249 (395)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 249 (395)
.+- .+...+. .++.. ...|+..+ ...++++....+... .-......+++.+|..+...|+.++|.
T Consensus 193 ~~~--------~d~e~WG---~~iV~--~yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~ 257 (297)
T COG4785 193 AEK--------SDKEQWG---WNIVE--FYLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEAT 257 (297)
T ss_pred HHh--------ccHhhhh---HHHHH--HHHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 221 1212211 11111 22233322 223333333221000 001224567889999999999999999
Q ss_pred HHHHHHHH
Q 016114 250 RLLRICLD 257 (395)
Q Consensus 250 ~~~~~a~~ 257 (395)
.+|+-++.
T Consensus 258 ~LfKLaia 265 (297)
T COG4785 258 ALFKLAVA 265 (297)
T ss_pred HHHHHHHH
Confidence 99998876
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=2.3e-07 Score=62.34 Aligned_cols=96 Identities=26% Similarity=0.343 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114 189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 268 (395)
Q Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 268 (395)
++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|...+++++.. .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 35778999999999999999999988752 223367889999999999999999999998873 23
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33467889999999999999999999888753
No 170
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=1.7e-05 Score=74.38 Aligned_cols=210 Identities=15% Similarity=0.063 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
|.-...|...-....+.++.++|.+..++|+....- ....+....|..+-++-..-|.-+.-.+.|++|.+.+.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~---REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINF---REEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc---chhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc---
Confidence 333444555556677888999999999998876411 11122233333333334444566667778888877642
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
+ ...+..|..+|...+++++|.++++..++-+++. ..+|...+..+.++++-+.|...+.+|+.
T Consensus 1529 ----~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1529 ----A--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred ----h--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 2 2467788889999999999999999988876432 45667788888899888999999999988
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114 216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 295 (395)
...+ ..........|.+-.+.|+.+.+..+|+..+. .+|.....|.-+...-...|+.+.+..+|+
T Consensus 1593 ~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1593 SLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred hcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 6543 12344556678888899999999999988776 356666677777778888899999999999
Q ss_pred HHHHHH
Q 016114 296 EALYIR 301 (395)
Q Consensus 296 ~al~~~ 301 (395)
+++...
T Consensus 1659 Rvi~l~ 1664 (1710)
T KOG1070|consen 1659 RVIELK 1664 (1710)
T ss_pred HHHhcC
Confidence 988753
No 171
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=1.3e-05 Score=75.20 Aligned_cols=250 Identities=16% Similarity=0.132 Sum_probs=178.6
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
+|.....|...-......++.++|.+..++|+....-.-+.+...+..++.|+-.. -|.-+.-.+.|++|.+.+..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd~- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCDA- 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcch-
Confidence 56666667666677788999999999999999764111111122344455555444 45667778889998886532
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
..++..|..+|...+++++|.++++..++-+. ....+|...+..++.+++-+.|..++.+|+
T Consensus 1530 ----------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1530 ----------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred ----------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34678899999999999999999999887653 345678889999999999999999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHH
Q 016114 257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 336 (395)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 336 (395)
....+ ..........|.+-++.|+.+.+..+|+-.+..+ |.....|....+.-.+.|+.. .+..+
T Consensus 1592 ~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--------PKRtDlW~VYid~eik~~~~~-~vR~l 1656 (1710)
T KOG1070|consen 1592 KSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--------PKRTDLWSVYIDMEIKHGDIK-YVRDL 1656 (1710)
T ss_pred hhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--------ccchhHHHHHHHHHHccCCHH-HHHHH
Confidence 85422 2345566778999999999999999999887643 555566777788888889888 89999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH-hcchhhhchhhHHHHHHHHHH
Q 016114 337 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDK-LGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 337 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~ 389 (395)
|++++.+- -.+..+...+..=.-|.+ .|+-+.....=.+|.+.-+..
T Consensus 1657 feRvi~l~------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1657 FERVIELK------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred HHHHHhcC------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 99998752 234444444444444444 466555555555666554443
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.8e-07 Score=73.60 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=105.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh-------hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 263 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 263 (395)
..-|..|++.|+|..|...|++++.......+.+.. ....++.|++.++.+++++.+|+....+++.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 557889999999999999999999887643322211 23457889999999999999999999999983
Q ss_pred CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
.|....+++.-|.++...|+++.|+..|++++++. |++. .+...|..+..+...+..+..++|.+++.-
T Consensus 287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~Nk---a~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-----PSNK---AARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56778899999999999999999999999999865 4443 344455555554444443556777776654
Q ss_pred H
Q 016114 344 Q 344 (395)
Q Consensus 344 ~ 344 (395)
.
T Consensus 356 ~ 356 (397)
T KOG0543|consen 356 L 356 (397)
T ss_pred c
Confidence 3
No 173
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=5.5e-06 Score=61.43 Aligned_cols=206 Identities=16% Similarity=0.086 Sum_probs=134.9
Q ss_pred ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 54 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
.+...+..++..|..|-..|-+.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---
Confidence 34567888899999999999999999999999987 6788899999999999999999999999999886
Q ss_pred HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH-
Q 016114 134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE- 212 (395)
Q Consensus 134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~- 212 (395)
+|..--+..|.|..++--|++.-|.+-+.+-.+. .+.+|... .|.. +-...-++.+|...+.+
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLY---l~E~k~dP~~A~tnL~qR 192 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLY---LNEQKLDPKQAKTNLKQR 192 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHH---HHHhhCCHHHHHHHHHHH
Confidence 5665567788898999999999998887765542 34444322 1111 11233466677655433
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114 213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 292 (395)
Q Consensus 213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 292 (395)
+....+. ...+..+-..+|.+ .+ ...++++....... ..-......++..||..+...|+.++|..
T Consensus 193 ~~~~d~e-----~WG~~iV~~yLgki-------S~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 193 AEKSDKE-----QWGWNIVEFYLGKI-------SE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHhccHh-----hhhHHHHHHHHhhc-------cH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 2221111 11111122222222 11 11222222211100 00011234578899999999999999999
Q ss_pred HHHHHHHH
Q 016114 293 LVLEALYI 300 (395)
Q Consensus 293 ~~~~al~~ 300 (395)
+|+-++.-
T Consensus 259 LfKLaian 266 (297)
T COG4785 259 LFKLAVAN 266 (297)
T ss_pred HHHHHHHH
Confidence 99988763
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=7.7e-08 Score=59.01 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
.+|..+...|++++|+..|++++. .+|....++..+|.++..+|++++|+..|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999987 568899999999999999999999999999998754
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.75 E-value=1.7e-05 Score=61.04 Aligned_cols=170 Identities=16% Similarity=0.096 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 222 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (395)
+..+++-|......|++++|++.|+..... .|..+....+...++..+.+.+++++|+...++-+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----- 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----- 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----
Confidence 356778888889999999999999988753 45556667788899999999999999999999988764
Q ss_pred CCChhHHHHHHHHHHHHHhh-----hcH---HHHHHHHHHHHHHHHHhhCCCCcchHHH--------------HHHHHHH
Q 016114 223 KEHPSFVTHLLNLAASYSRS-----KNF---VEAERLLRICLDIMTKTVGPDDQSISFP--------------MLHLGIT 280 (395)
Q Consensus 223 ~~~~~~~~~~~~la~~~~~~-----~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~la~~ 280 (395)
+.+|+...+++..|.++... .+. .+|..-|+..+. +. |+++....+ -..+|..
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RY--PNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777766543 233 344444444443 22 333332222 2456889
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114 281 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 335 (395)
Q Consensus 281 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 335 (395)
|.+.|.+..|...++..++.. ++.+.+-.++..+..+|...|-.+ +|..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~-~a~~ 225 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTD-EAKK 225 (254)
T ss_pred HHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChH-HHHH
Confidence 999999999999999998876 555677788999999999999887 6643
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.74 E-value=1.3e-07 Score=63.49 Aligned_cols=96 Identities=26% Similarity=0.390 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..++++++... |
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 4677899999999999999999999876 23334778899999999999999999999998762 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
....++..+|.++...|++++|...+.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999988764
No 177
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.72 E-value=7.1e-05 Score=67.43 Aligned_cols=265 Identities=14% Similarity=0.059 Sum_probs=159.2
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC-CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
....++......++.+|.....++......... ......+...-.-|.+....|++++|+++.+.++...... ...
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~ 494 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYR 494 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cch
Confidence 344567778889999999999887766433110 1112233444455778889999999999999999875432 223
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 220 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (395)
....++..+|.+..-.|++++|..+..++.++.+.. ........+....+.++..+|+...|. -..+.......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~----~~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q 568 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH----DVYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQ 568 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Confidence 345677889999999999999999999999998763 223333445566788999999433222 22222222222
Q ss_pred hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 221 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
.....+.........+.++...-+++.+..-....+....... +......-.+..|+.+....|+.++|...+.+....
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1112222111122222333333336666666666655433221 111122223358999999999999999999888777
Q ss_pred HHHHcCCCChHH-HHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114 301 REIAFGKDSLPV-GEALDCLVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 301 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~ 339 (395)
.... ..++.. +.+.......+..+|+.. +|.....+
T Consensus 648 ~~~~--~~~~~~~a~~~~v~~~lwl~qg~~~-~a~~~l~~ 684 (894)
T COG2909 648 LLNG--QYHVDYLAAAYKVKLILWLAQGDKE-LAAEWLLK 684 (894)
T ss_pred hcCC--CCCchHHHHHHHhhHHHhcccCCHH-HHHHHHHh
Confidence 6432 122222 233333344556677777 66555555
No 178
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.68 E-value=3.7e-06 Score=56.75 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=86.9
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q 016114 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 183 (395)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (395)
+-.-|......|+.+.|++.|.+++.++ |..+.+|++.+..+.-+|+.++|+.-+++++++. ++..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa------g~~t 111 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA------GDQT 111 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc------Cccc
Confidence 3445778889999999999999999884 5567899999999999999999999999999984 4556
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.....++...|.+|..+|+.+.|..-|+.+-++
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 677788899999999999999999999988776
No 179
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.67 E-value=0.0001 Score=60.04 Aligned_cols=255 Identities=18% Similarity=0.091 Sum_probs=144.3
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHh---cccCCCC-chHH
Q 016114 112 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKD---SNYMSLD-DSIM 186 (395)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~---~~~~~~~-~~~~ 186 (395)
...|+++.|..++.++-.......+......+..+++.|......+ ++++|..+++++.+++.. .....++ ....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4689999999999999877642211122247778899999999999 999999999999999744 1112222 2456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 266 (395)
..++..++.+|...+.++...+ ..++++..+...+ ++|... ..--.+..+.++.+++.+.+.+++.-. +
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~------~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSV------D 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhc------c
Confidence 6778899999999888765444 3344444444332 333322 112233333788888888888887621 1
Q ss_pred Cc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCC--ch-hHHHHHHHHHH
Q 016114 267 DQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGE--DD-TKLLELLKRVL 341 (395)
Q Consensus 267 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~-~~A~~~~~~al 341 (395)
.+ ...........-+. ......|...+...+... +.+. ++ ..... .+..++...+. .. .+-++-.+..+
T Consensus 153 ~~e~~~~~~l~~i~~l~-~~~~~~a~~~ld~~l~~r---~~~~-~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~ 226 (278)
T PF08631_consen 153 HSESNFDSILHHIKQLA-EKSPELAAFCLDYLLLNR---FKSS-EDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEELL 226 (278)
T ss_pred cccchHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHH---hCCC-hhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHHH
Confidence 11 11111111111122 233456666666655433 2111 22 22222 22333333322 11 01133444444
Q ss_pred HHHHhcc-CCCCHHHH----HHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114 342 RIQEREF-GSESEEVM----LTLKKVVSYLDKLGRKEEKFPLKKRLS 383 (395)
Q Consensus 342 ~~~~~~~-~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~ 383 (395)
+...+.. ++-.+... ..+.+.|.-.++.++|++|..+|+-++
T Consensus 227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4322222 22233332 344566888999999999999999776
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.66 E-value=1.5e-07 Score=57.67 Aligned_cols=59 Identities=19% Similarity=0.381 Sum_probs=53.9
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
.+|..+...|++++|+..|++++.. .|....++..+|.++..+|++++|+.+|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999874 6889999999999999999999999999999986
No 181
>PRK15331 chaperone protein SicA; Provisional
Probab=98.65 E-value=6.7e-07 Score=63.84 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=85.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
+..-+++.-...+..|.-++..|++++|..+|+-..-. + +...+.+..||.++..+++|++|+..|..+..+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----D---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556777788899999999999999999999765432 2 233446789999999999999999999998876
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 129 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (395)
. +..+...+..|.|+..+|+.+.|...|+.++.
T Consensus 101 ~--------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 L--------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred c--------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2 23345578899999999999999999999986
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.63 E-value=1.2e-06 Score=67.90 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 016114 232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 311 (395)
Q Consensus 232 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 311 (395)
.++.|.-+...|+|..|...|..-++. .++++....+++.||.+++.+|+++.|...|..+.+-+ |++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 678888889999999999999988873 36778889999999999999999999999999988855 77788
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114 312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 344 (395)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 344 (395)
..+++..||.+...+|+.+ +|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d-~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTD-EACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHC
Confidence 8889999999999999999 9999999998765
No 183
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.63 E-value=1.3e-06 Score=58.96 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH
Q 016114 274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 353 (395)
Q Consensus 274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 353 (395)
+..-|......|+.+.|++.|.+++.+. |..+.+|++-+..+.-+|+.+ +|++-+.+++++. |+...
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e-~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDE-EALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChH-HHHHHHHHHHHhc----Cccch
Confidence 3445777888999999999999999876 556678999999999999999 9999999999874 44555
Q ss_pred HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 354 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 354 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
....++..-|.+|..+|+.+.|..-|+.+.+++.++.
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 5667888999999999999999999999999887764
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.63 E-value=3.4e-05 Score=59.46 Aligned_cols=174 Identities=12% Similarity=0.059 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 266 (395)
...+.+-|......|++++|+..|+..... .+..|..-.+...++..+.+.+++++|+...++-+... +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 345577888888999999999999987642 23445556788899999999999999999999988753 67
Q ss_pred CcchHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHcCCCChHHH--------------HHHHHHHHHHHHcC
Q 016114 267 DQSISFPMLHLGITLYHL-----NRDKEAEKLVLEALYIREIAFGKDSLPVG--------------EALDCLVSIQTRLG 327 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~ 327 (395)
||+...+++..|.++... .|...+...+...-+...+- |+++-.. .--..+|..|.+.|
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888887653 33333333333333332222 3333221 11234789999999
Q ss_pred CchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchh
Q 016114 328 EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL 378 (395)
Q Consensus 328 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 378 (395)
.+. .|+..++.+++-++ +.+...+++..+...|..+|-.++|...
T Consensus 182 ~~~-AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 182 AYV-AAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred ChH-HHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 999 99999999987653 4566678899999999999999998764
No 185
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.61 E-value=2.4e-05 Score=60.34 Aligned_cols=242 Identities=14% Similarity=0.110 Sum_probs=163.0
Q ss_pred hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114 72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 151 (395)
Q Consensus 72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 151 (395)
..+.++|+.-|++++++- |.....-..++-.+..+++.+|++++-...|.+.+...+.....+.... +.+++-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHH
Confidence 347899999999999873 2233344567888899999999999999999999988777654443331 2223323
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh----h
Q 016114 152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP----S 227 (395)
Q Consensus 152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~ 227 (395)
.-....+.+--..+|+..++..+.. .+...+......+|.+|+..|.|.+-.+.+++.-..++...|.++. .
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdA----KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ 189 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDA----KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ 189 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhh----hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence 2334455566667777777766543 3444445555779999999999999888888777666655554432 3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP-MLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 306 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 306 (395)
...++..-..+|..+.+..+-..+|++++.+...+ .||.+..+ ...=|..+.+.|+|++|-.-|=+|..-+.+.-.
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 44455555678888888888889999999875544 35544333 233466788889999998888777776655322
Q ss_pred CCChHHHHHHHHHHHHHHHcC
Q 016114 307 KDSLPVGEALDCLVSIQTRLG 327 (395)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~ 327 (395)
| ......-+..||..+.+.|
T Consensus 267 p-RRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 267 P-RRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred c-chhHHHHHHHHHHHHHHcC
Confidence 2 2223333556777777665
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=2.7e-07 Score=71.33 Aligned_cols=105 Identities=17% Similarity=0.119 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH
Q 016114 274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 353 (395)
Q Consensus 274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 353 (395)
.++.|.-+...|+|..|...|..-++.+ |+.+....++++||.++..+|+++ .|...|..+..-+ +.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~-~Aa~~f~~~~k~~-----P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYE-DAAYIFARVVKDY-----PKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccch-HHHHHHHHHHHhC-----CCCC
Confidence 6788888999999999999999988866 777888899999999999999999 9999999988754 5677
Q ss_pred HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 354 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 354 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
...++++.||.+...+|+.++|...++++++-.++.
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 778999999999999999999999999998766543
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.56 E-value=9.4e-06 Score=71.46 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=93.0
Q ss_pred HHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHHhcC-
Q 016114 20 LLHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA-VEIYHRVITILELNRG- 94 (395)
Q Consensus 20 ~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~~~~~~- 94 (395)
++..|..+... ++...|+.+|++++++ +|..+.++..++.++.....+... .....++.+...+...
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 45566666544 4588999999999986 355566666666666544333210 0111222222211111
Q ss_pred CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
+..+....++..+|......|++++|...+++|+.+ .|. ..++..+|.++...|++++|+..|++|+.+
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123334567888898999999999999999999987 243 578999999999999999999999999985
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=98.54 E-value=1.3e-06 Score=62.36 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
++...+..+..|.-++..|++++|..+|+-.... ++.....+..||.++..+++|++|+..|..+..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4567788889999999999999999999876543 44556678999999999999999999999998763
Q ss_pred hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
.++|. ..+..|.++...|+.+.|...|+.+++
T Consensus 102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 23342 367789999999999999999999987
No 189
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.49 E-value=0.0001 Score=56.99 Aligned_cols=242 Identities=18% Similarity=0.153 Sum_probs=153.4
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHH
Q 016114 114 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 193 (395)
Q Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 193 (395)
..++++|+.-|++++++- |.....-..++..+..+++.+|++++-...|.+.+...+.. ...+.. ..+.+++
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA--VTrNyS--EKsIN~I 111 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA--VTRNYS--EKSINSI 111 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH--Hhcccc--HHHHHHH
Confidence 347899999999999873 33334456788889999999999999999999998876643 111111 1111222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC----cc
Q 016114 194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD----QS 269 (395)
Q Consensus 194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~ 269 (395)
-..-....+.+--...|+..++..+... +...+..+-..||.+|...++|.+-...+.+.-..++.-.|.++ ..
T Consensus 112 lDyiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ 189 (440)
T KOG1464|consen 112 LDYISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ 189 (440)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence 2222233444444556666555544432 22333344557899999999999988888777665555444432 23
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114 270 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE-ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 348 (395)
Q Consensus 270 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 348 (395)
...++..-...|..+.+..+-..+|++++.+...+ .||...- +..+=|..+.+.|+++ +|..-|=+|..-+.+.-
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe-~AhTDFFEAFKNYDEsG 265 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFE-KAHTDFFEAFKNYDESG 265 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHH-HHHhHHHHHHhcccccC
Confidence 34455555677888888888889999999876544 4454432 2333466788889998 78777777776665532
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc
Q 016114 349 GSESEEVMLTLKKVVSYLDKLG 370 (395)
Q Consensus 349 ~~~~~~~~~~~~~la~~~~~~g 370 (395)
.+ .....--+..||.++.+.|
T Consensus 266 sp-RRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 266 SP-RRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred Cc-chhHHHHHHHHHHHHHHcC
Confidence 11 1222233455666666654
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.48 E-value=1.1e-05 Score=71.01 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhC---chhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChH--------HHHHHHHHHH
Q 016114 60 TSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESVFSRIL 128 (395)
Q Consensus 60 ~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al 128 (395)
.-++..|..+...+ +...|+.+|++++++ +|+.+.++..++.++.....+. .+.....+++
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 33445566665544 478999999999987 6788888888777775543332 2222222222
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114 129 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 208 (395)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (395)
.+ +..+....++..+|......|++++|...+++|+.+ .++ ...+..+|.++...|++++|++
T Consensus 412 al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-------~ps----~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 412 AL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-------EMS----WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCC----HHHHHHHHHHHHHcCCHHHHHH
Confidence 21 112333467778888888999999999999999985 221 4578899999999999999999
Q ss_pred HHHHHHHH
Q 016114 209 LLEECLLI 216 (395)
Q Consensus 209 ~~~~al~~ 216 (395)
.|++|+.+
T Consensus 475 ~~~~A~~L 482 (517)
T PRK10153 475 AYSTAFNL 482 (517)
T ss_pred HHHHHHhc
Confidence 99999886
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.47 E-value=7.3e-05 Score=54.26 Aligned_cols=132 Identities=12% Similarity=0.011 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 308 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 308 (395)
..-...||....+.|++.+|...|++++. .--......+..+++..+..+++..|...+++..+.-.. ..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qals-------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa---~r 158 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALS-------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA---FR 158 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---cC
Confidence 34566789999999999999999999876 222334556788899999999999999888887664311 11
Q ss_pred ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114 309 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 383 (395)
Q Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 383 (395)
.| .....++.++...|.+. .|...|+.++..+. + .......+..+.++|+.++|..-+....
T Consensus 159 ~p---d~~Ll~aR~laa~g~~a-~Aesafe~a~~~yp-----g----~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 159 SP---DGHLLFARTLAAQGKYA-DAESAFEVAISYYP-----G----PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CC---CchHHHHHHHHhcCCch-hHHHHHHHHHHhCC-----C----HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 22 23567889999999998 89999999987642 1 2344556788889998888877655544
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.1e-05 Score=61.99 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIY 131 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~ 131 (395)
+|..++-|..||.+|...|+++.|...|.+++++ .++....+..+|.++..+. ...++...+.+++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 3556778889999999999999999999999998 4556677777888776654 356788999999876
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 132 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 132 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
+|....+...||..++..|+|.+|...++..++..
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 56667889999999999999999999999999864
No 193
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.45 E-value=0.0005 Score=56.07 Aligned_cols=255 Identities=17% Similarity=0.149 Sum_probs=145.8
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHh-c-CCCC----hh
Q 016114 27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN-R-GTES----AD 99 (395)
Q Consensus 27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~-~-~~~~----~~ 99 (395)
...+|+++.|..++.++-.......+......+..+++.|......+ ++++|..+++++.++.... . ...+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887643222333467888999999999999 9999999999999997551 1 1122 23
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
...++..++.+|...+.++...+ ..++++..+...+ ++|.+.. ..+ .+....++.+++.+.+.+++....-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~l-~il~~~~~~~~~~~~L~~mi~~~~~---- 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LKL-EILLKSFDEEEYEEILMRMIRSVDH---- 153 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HHH-HHHhccCChhHHHHHHHHHHHhccc----
Confidence 46678889999999988765444 4455555544432 3343321 122 2223388899999999988875321
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh-HHHHHHHHHHHHHhhh--cHHHH--HHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSK--NFVEA--ERLLRI 254 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~--~~~~A--~~~~~~ 254 (395)
++.+ ...+ .....-+.. .....+...+...+...-. ..++ ..... -+..++...+ +.... ++....
T Consensus 154 -~e~~-~~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~~----~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~ 224 (278)
T PF08631_consen 154 -SESN-FDSI-LHHIKQLAE-KSPELAAFCLDYLLLNRFK----SSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEE 224 (278)
T ss_pred -ccch-HHHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHhC----CChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHH
Confidence 1111 1111 111111122 2345666666665543211 1121 22211 1222222222 22222 333444
Q ss_pred HHHHHHHhhC-CCCcchH----HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 255 CLDIMTKTVG-PDDQSIS----FPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 255 a~~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
.++...+..+ +-++... ..+.+.|.-.+..++|++|..+|+-++.
T Consensus 225 ~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 225 LLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4443333322 2222222 2345668888999999999999997763
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.9e-06 Score=63.76 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC---chhHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITI 88 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~ 88 (395)
.+|..+.-|..||.+|+..|+++.|...|.+|+++. ++++ ..+..+|.++.... ...++...+++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~---~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNP---EILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 467777889999999999999999999999999983 3334 44556676665543 457889999999886
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 146 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 146 (395)
+|....+.+.||..++..|+|.+|...++..++.. +++.|....+-
T Consensus 223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie 268 (287)
T COG4235 223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIE 268 (287)
T ss_pred --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHH
Confidence 67778899999999999999999999999998863 44555544333
No 195
>PRK11906 transcriptional regulator; Provisional
Probab=98.45 E-value=1.6e-05 Score=66.66 Aligned_cols=161 Identities=17% Similarity=0.081 Sum_probs=114.8
Q ss_pred HHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh---C------chhHHHHHHHHHHHH
Q 016114 21 LHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---G------RAKKAVEIYHRVITI 88 (395)
Q Consensus 21 ~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g------~~~~A~~~~~~al~~ 88 (395)
+..|......+ ..+.|+.+|.+++... +-+|..+.++..++.++... | ...+|....++|+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 55555554443 4567888888888431 23567788888888887654 2 234555666666655
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 168 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 168 (395)
++..+.++..+|.+....++++.|...|++|+.+ +|..+.++...|.+....|+.++|.+.+++
T Consensus 334 --------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 334 --------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred --------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667788999999999999999999999999987 688888999999999999999999999999
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 016114 169 ALRVIKDSNYMSLDDSIMENMRIDLAE-LLHIVGRGQEGRELLEE 212 (395)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 212 (395)
++++. |. ........+-. .|+ ....+.|+.+|-+
T Consensus 398 alrLs-------P~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLE-------PR--RRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HhccC-------ch--hhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 99852 22 22222223333 343 4456777777644
No 196
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.45 E-value=0.00098 Score=59.22 Aligned_cols=211 Identities=13% Similarity=0.046 Sum_probs=114.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH------HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 146 MCSLAHAKCANGNAEEAVELYKK------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
|-.-|.+|.+..++++|+++|++ ++++.+- .-+..+...-...|.-+...|+++.|+..|-++-...+.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarf-----afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 44556777778888888888775 4444332 122333344456788888899999998887654332211
Q ss_pred h---hCC-CChh-------------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 016114 220 Y---KGK-EHPS-------------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 282 (395)
Q Consensus 220 ~---~~~-~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 282 (395)
. .+. ..+. ....+-.++.-|...|+|+-|.++|.++-.. ..-...|-
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~ 802 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG 802 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence 1 000 0111 1112334566666777777777766554210 11123455
Q ss_pred hcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH------HHHHHHHHhc---------
Q 016114 283 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL------KRVLRIQERE--------- 347 (395)
Q Consensus 283 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~------~~al~~~~~~--------- 347 (395)
+.|+|..|.++-++.. ++ ..+...+..-+.-....|++. +|..+| .++++++.+.
T Consensus 803 k~~kw~da~kla~e~~-------~~--e~t~~~yiakaedldehgkf~-eaeqlyiti~~p~~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH-------GP--EATISLYIAKAEDLDEHGKFA-EAEQLYITIGEPDKAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred ccccHHHHHHHHHHhc-------Cc--hhHHHHHHHhHHhHHhhcchh-hhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence 6666666655544332 22 223334444444455555554 444333 2333333321
Q ss_pred cCCCCHH-HHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 348 FGSESEE-VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 348 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
.+..|++ ..++...+|.-|...|+..+|...|-++-+...
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ka 913 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKA 913 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHH
Confidence 1122332 346778889999999999999998887765543
No 197
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=1.1e-05 Score=67.79 Aligned_cols=119 Identities=24% Similarity=0.164 Sum_probs=97.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114 192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 271 (395)
Q Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 271 (395)
.+..++...++++.|+.++++..+ ..|. +...++.++...++-.+|+..+.+++. ..|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~--------~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRE--------RDPE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHh--------cCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCH
Confidence 355666677899999999888654 2344 344588999999999999999999986 345567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 338 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 338 (395)
..+...+..+...++++.|++..+++.... |....+|..|+.+|...|+++ .|+..+.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e-~ALlaLN 292 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFE-NALLALN 292 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHH-HHHHHHh
Confidence 888889999999999999999999999865 667788999999999999999 8886654
No 198
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=1.2e-05 Score=67.67 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=98.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhh
Q 016114 23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 102 (395)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (395)
+-.++...++++.|+.++++..+. +|. +...++.++...++-.+|+..+.+++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 445566678899999998886542 233 3445789999999999999999999853 455578
Q ss_pred hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114 103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169 (395)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 169 (395)
.+...+..+...++++.|+...+++... .|....+|..|+.+|...|+++.|+-.++.+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8888999999999999999999999987 5777789999999999999999999877643
No 199
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.0003 Score=54.88 Aligned_cols=229 Identities=14% Similarity=0.146 Sum_probs=147.4
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
.+++-....+++++|+..|.+.+.---........+.-.+...++.+|...|++..--+.....-+..... ..|...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~ 84 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKIT 84 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHH
Confidence 34566667788899998888877531000001112334567789999999999887666665555544443 234444
Q ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114 144 MAMCSLAHA-KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 222 (395)
Q Consensus 144 ~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (395)
.+...+-.- -.....++.-+..+...++...+. .........-..+...+...|+|.+|+......+.-.++..
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D- 159 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD- 159 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-
Confidence 444333332 234567788888888888876542 11112223335678899999999999999998888777654
Q ss_pred CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
+.+.....+..-..+|....+..++...+..|.......+-| |... ..-..-|.....-.+|..|..+|-++++-+
T Consensus 160 -DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 160 -DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred -CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 455566666667788888899999888887776655444322 2221 111222555667789999999999998876
Q ss_pred HH
Q 016114 302 EI 303 (395)
Q Consensus 302 ~~ 303 (395)
..
T Consensus 237 t~ 238 (421)
T COG5159 237 TL 238 (421)
T ss_pred cc
Confidence 43
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.38 E-value=0.00012 Score=53.10 Aligned_cols=136 Identities=19% Similarity=0.182 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
..-...+|......|++.+|...|++++.- -.......+..++...+..+++..|...+++..+....
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa----- 156 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA----- 156 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-----
Confidence 344667899999999999999999999863 12334567788999999999999999999988765211
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
.........+|..+...|++.+|...|+.++... |+.. .....+..+..+|+.++|..-+....+...
T Consensus 157 -~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-------pg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 157 -FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-------PGPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred -cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------CCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1123345668999999999999999999999864 2221 223467788899999998887776655443
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.38 E-value=2.7e-05 Score=54.47 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114 188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 267 (395)
Q Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 267 (395)
..+..-|......|+|++|++.++...... +..+....+...|+.+|...+++++|+..+++.+++ .+.|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~h 80 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTH 80 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Confidence 345778999999999999999998765542 234555678889999999999999999999999884 4788
Q ss_pred cchHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHHH
Q 016114 268 QSISFPMLHLGITLYHLNR---------------DKEAEKLVLEALYIR 301 (395)
Q Consensus 268 ~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~ 301 (395)
|.+..+++..|.++..+.. ...|...|++.++.+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 9999999999999988766 666777776666654
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.37 E-value=1.7e-05 Score=55.51 Aligned_cols=90 Identities=17% Similarity=0.015 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 308 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 308 (395)
...++.-|.-.+..|+|++|++.|+.....+ +..+....+...|+.+|+..|++++|+..+++-+++. |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 3457788888999999999999998776522 4456667888999999999999999999999999876 89
Q ss_pred ChHHHHHHHHHHHHHHHcCC
Q 016114 309 SLPVGEALDCLVSIQTRLGE 328 (395)
Q Consensus 309 ~~~~~~~~~~l~~~~~~~~~ 328 (395)
||.+.-+++..|.++..+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CCCccHHHHHHHHHHHHHhh
Confidence 99988899999988887754
No 203
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00055 Score=52.97 Aligned_cols=243 Identities=17% Similarity=0.162 Sum_probs=140.7
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114 27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 106 (395)
Q Consensus 27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 106 (395)
++..|+|..++..-.+.-.. +........+.+.|..+|.+...+.-... +. .+. ..+...
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~---------~~~~e~d~y~~raylAlg~~~~~~~eI~~---------~~-~~~-lqAvr~ 77 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS---------KTDVELDVYMYRAYLALGQYQIVISEIKE---------GK-ATP-LQAVRL 77 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc---------cchhHHHHHHHHHHHHccccccccccccc---------cc-CCh-HHHHHH
Confidence 44578887777655443211 12334455667788888877654432211 11 111 122333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHH
Q 016114 107 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 186 (395)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 186 (395)
++.....-++.++-+.-..+-+. +............-|.+|...|++++|++.......+
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a------~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------- 137 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVA------DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------- 137 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHH------hhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------
Confidence 34433333333333322222221 1112222234455678899999999999988773322
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHHHHh
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----KNFVEAERLLRICLDIMTKT 262 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~ 262 (395)
.+...-..++.+..+.+-|++.+++..++.+. .++..||..+... ++..+|.-+|++.-+
T Consensus 138 -E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~s~----- 201 (299)
T KOG3081|consen 138 -EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE----- 201 (299)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence 11122345677788888888888887765321 2344455554432 346666666655432
Q ss_pred hCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 263 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
..+.+...+..++.++..+|++++|...++.++... +....++.++..+-...|... ++.+-+
T Consensus 202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~-~~~~r~ 264 (299)
T KOG3081|consen 202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDA-EVTERN 264 (299)
T ss_pred ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCCh-HHHHHH
Confidence 235566788899999999999999999999998743 333456788888888889886 444433
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.37 E-value=3.8e-06 Score=70.25 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=63.4
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
..|.....++++|..|...|++++|+..|++++++ .++++....+++++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999998 3334333367999999999999999999999999986
No 205
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00056 Score=52.89 Aligned_cols=153 Identities=20% Similarity=0.137 Sum_probs=106.4
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
.....-|.+|.+-|++++|+........+ .+...--.++.+..+.+-|...++++.++...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------
Confidence 34445578899999999999988763322 22222345677888899999988888776332
Q ss_pred CchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
. ++..||..+.. .+++.+|.-+|++.-+ ..+.+...++.++.+++.+|++++|...++.++.
T Consensus 170 --~----tLtQLA~awv~la~ggek~qdAfyifeE~s~--------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 170 --A----TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred --H----HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 1 22344544443 3456667666665322 1334556788899999999999999999999997
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114 258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 295 (395)
..+....++.++..+-...|...++..-+-
T Consensus 236 --------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 236 --------KDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred --------ccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 345557788888888889998877765443
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00018 Score=55.39 Aligned_cols=140 Identities=21% Similarity=0.213 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
..+.+.+..++.-.|+|.-+...+.+.++. +++........||.+.++.|+.+.|..+|+++-+...+..+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~-- 247 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG-- 247 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--
Confidence 445667788888899999999999988774 45666677888999999999999999999987766555422
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
-.....+..+.+.+|...+++.+|...+.+++.. .+.. ..+.++.|.|....|+..+|++.++.++++.
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-------D~~~---~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-------DPRN---AVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhcccc-------CCCc---hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2234456788899999999999999999988763 1222 2334789999999999999999999888763
No 207
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.33 E-value=1.3e-06 Score=48.01 Aligned_cols=41 Identities=32% Similarity=0.279 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 311 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 311 (395)
+.++.++|.+|..+|++++|..++++++.+.+..+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999985
No 208
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=2.4e-05 Score=57.35 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
+..+-.-|+-++..|+|++|..-|..|+.+++.. .......++.+.|.+...++.++.|+.-+.+++++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-------- 163 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-------- 163 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence 4456677899999999999999999999998654 22456667889999999999999999999999998
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
.|....++...+.+|..+.+|++|+.-|.+.++.
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5677788888999999999999999999999876
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.33 E-value=4.7e-06 Score=69.69 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=63.6
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
..|.....++++|..|...|+|++|+..|++++++ .|++.....+++|+|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678889999999999999999999999999996 4555544466899999999999999999999999986
No 210
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00012 Score=61.39 Aligned_cols=320 Identities=11% Similarity=0.046 Sum_probs=175.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh-------
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN------- 92 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 92 (395)
+...+..-+..+.|+...++.+..-.+.+ ++..+. ++.--..|+..|.+... ...++...+....
T Consensus 20 l~~~a~~~f~~~~~d~cl~~l~~l~t~~~-----~~~~v~--~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~ 91 (696)
T KOG2471|consen 20 LLCQAHEQFNNSEFDRCLELLQELETRGE-----SSGPVL--HNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVS 91 (696)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHhccc-----ccccee--eehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchh
Confidence 45566667788899988887766544321 111111 22222334444443322 2222222221111
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.+-+.......+++.|.++.....+..|+..........+... ....+......-.++....+.++|+.++.-.-++
T Consensus 92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~ 168 (696)
T KOG2471|consen 92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI 168 (696)
T ss_pred cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233345677888899989999999988777766554331 1222223333445566666777787766544333
Q ss_pred HHhc--ccCCCC----------chHHH-----------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114 173 IKDS--NYMSLD----------DSIME-----------NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 229 (395)
Q Consensus 173 ~~~~--~~~~~~----------~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (395)
.... ...+.. ++..+ .+...-...+....+..-+..-.+.++.+. .+..
T Consensus 169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a--------~~s~ 240 (696)
T KOG2471|consen 169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA--------QDSS 240 (696)
T ss_pred HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc--------CCCc
Confidence 2211 001100 00000 000111111222222222222222221111 1233
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHcC
Q 016114 230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALY-IREIAFG 306 (395)
Q Consensus 230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~ 306 (395)
.++...+..+...|++.+|.+.+... .+.+...+...|. ....+.++|-+++..|.+.-+..+|.+|++ ...+...
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 45666788889999999999887643 2222222222232 233457999999999999999999999996 3333321
Q ss_pred C---C------ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 016114 307 K---D------SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK 368 (395)
Q Consensus 307 ~---~------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 368 (395)
. . ......++++.|..+...|++. .|.++|.+++..+.. + +..|..+|.++..
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl-~AfqCf~~av~vfh~-----n---PrlWLRlAEcCim 381 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL-LAFQCFQKAVHVFHR-----N---PRLWLRLAECCIM 381 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcH-HHHHHHHHHHHHHhc-----C---cHHHHHHHHHHHH
Confidence 1 1 1123567899999999999999 999999999998865 2 3567788887754
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00074 Score=52.17 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
.+.+.+..++...|.|.-....+.+.++. .++..+.+ ...+|.+....|+.+.|..+++..-+...+..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~------~~e~~p~L---~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~-- 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY------YPEQEPQL---LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD-- 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh------CCcccHHH---HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--
Confidence 45677888899999999999999998873 22333333 36789999999999999999997765544443
Q ss_pred CChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 224 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
+-.....+..+.+.+|.-.+++.+|...+.+.+. .++..+.+.++-|.|..-.|+...|++..+.++.+.
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~--------~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR--------MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhccc--------cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2233455677889999999999999999988776 355666777889999999999999999998887754
No 212
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=4.3e-05 Score=56.09 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (395)
.+-.-|.-++..|+|++|..-|..|++++... .......++.+.|.+...++.++.|+.-..+++++
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-------- 163 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPST-----STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-------- 163 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence 44556788899999999999999999987532 33555677889999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.|....++...|.+|.+...+++|++-|.+.++
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 466677888889999999999999999999887
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.26 E-value=0.0012 Score=52.90 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
.......+..+...+++..+...+...... ...+.....+...+..+...+++..+...+..++...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 125 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD------- 125 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-------
Confidence 345566777888888888888888877653 1123455667778888888888888888888877642
Q ss_pred ChhhhhhHHhHHH-HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 97 SADLVLPLFSLGS-LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 97 ~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
+.........+. ++...|+++.|...+.+++... +............+..+...++++.|+..+.+++.....
T Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 126 -PDPDLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred -CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 111222333344 8889999999999999995521 101234455666666688889999999999999886432
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
. ....+..++..+...+++++|...+..++.... .....+..++..+...+.++++...+.++
T Consensus 200 ------~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 200 ------D---DAEALLNLGLLYLKLGKYEEALEYYEKALELDP--------DNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred ------c---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--------ccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 0 244557888999999999999999998887532 13344556666666777789999888888
Q ss_pred HHH
Q 016114 256 LDI 258 (395)
Q Consensus 256 ~~~ 258 (395)
+..
T Consensus 263 ~~~ 265 (291)
T COG0457 263 LEL 265 (291)
T ss_pred HHh
Confidence 773
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.23 E-value=3.2e-06 Score=46.40 Aligned_cols=41 Identities=34% Similarity=0.520 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 269 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 269 (395)
+.++.++|.+|..+|++++|..++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999874
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.22 E-value=0.0019 Score=52.97 Aligned_cols=299 Identities=13% Similarity=0.053 Sum_probs=187.4
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh-h
Q 016114 23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL-V 101 (395)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~ 101 (395)
-|.+-...|+-..|..+-.++-.+... +.+-.+.. .-+..-...|+++.|.+-|+..+. +|+. .
T Consensus 90 tGliAagAGda~lARkmt~~~~~llss----DqepLIhl--LeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRl 154 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSS----DQEPLIHL--LEAQAALLEGDYEDARKKFEAMLD---------DPETRL 154 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhc----cchHHHHH--HHHHHHHhcCchHHHHHHHHHHhc---------ChHHHH
Confidence 344555667777888777777655432 22333322 235556678999999999987764 2332 2
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
--+..|-.--...|..+.|..+-+++.... |....+....-...+..|+++.|+++.+....... .++
T Consensus 155 lGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v----ie~ 222 (531)
T COG3898 155 LGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV----IEK 222 (531)
T ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh----hch
Confidence 223333334457899999999999887763 33334444444566789999999999987765432 122
Q ss_pred CchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 260 (395)
+......+-..-+.... ...+...|...-.++.++ .|+.+..-..-+..+...|+..++-.+++.+.+.
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-- 292 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA-- 292 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--
Confidence 22221111111122221 123567777777777665 3444455556688899999999999999988773
Q ss_pred HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 340 (395)
Q Consensus 261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 340 (395)
..||.+.. +|....--+.++.-++++-.+. .-.++...+....+..-...|++. .|..--+.+
T Consensus 293 ----ePHP~ia~-------lY~~ar~gdta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~-~ARa~Aeaa 355 (531)
T COG3898 293 ----EPHPDIAL-------LYVRARSGDTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFS-AARAKAEAA 355 (531)
T ss_pred ----CCChHHHH-------HHHHhcCCCcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchH-HHHHHHHHH
Confidence 35666544 3444444445666666665543 223555667778888888889888 777766666
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHh-cchhhhchhhHHHHH
Q 016114 341 LRIQEREFGSESEEVMLTLKKVVSYLDKL-GRKEEKFPLKKRLSN 384 (395)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 384 (395)
..+. | ...++..|+.+-... |+-.++..++-+++.
T Consensus 356 ~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 356 AREA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 6532 1 134567778887765 898888888888764
No 216
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.20 E-value=7.4e-06 Score=50.68 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=47.1
Q ss_pred HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
...|++++|+..|++++.. .|....+...+|.++...|++++|...+.+++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5689999999999999987 6777888999999999999999999999998865
No 217
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.20 E-value=7.6e-06 Score=50.60 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=46.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 240 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 240 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
...|++++|+..|++++.. +|....++..+|.++...|++++|...+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5789999999999999883 57778888999999999999999999999987743
No 218
>PRK11906 transcriptional regulator; Provisional
Probab=98.19 E-value=6.9e-05 Score=63.07 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=100.1
Q ss_pred CCcHHHHHHHHHHHHHHHhh---------hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTL---------ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 81 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 81 (395)
+.+|..+.+|..++.+++.. .+..+|....++|+++ + +..+.++..+|.+....|+++.|...
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-----d---~~Da~a~~~~g~~~~~~~~~~~a~~~ 360 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-----T---TVDGKILAIMGLITGLSGQAKVSHIL 360 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-----C---CCCHHHHHHHHHHHHhhcchhhHHHH
Confidence 66788888888888887754 2344566666666665 2 34456788899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHH-HHHHCCCH
Q 016114 82 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAH-AKCANGNA 159 (395)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~-~~~~~g~~ 159 (395)
|++|+.+ +|+.+.+++..|.+....|+.++|...+++++++ +|. .......+-. .|+ ....
T Consensus 361 f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~ 423 (458)
T PRK11906 361 FEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--------EPRRRKAVVIKECVDMYV-PNPL 423 (458)
T ss_pred HHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CchhhHHHHHHHHHHHHc-CCch
Confidence 9999987 7888999999999999999999999999999987 333 2223333333 333 4556
Q ss_pred HHHHHHHHH
Q 016114 160 EEAVELYKK 168 (395)
Q Consensus 160 ~~A~~~~~~ 168 (395)
++|+.+|-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 777776644
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.19 E-value=0.0038 Score=54.95 Aligned_cols=178 Identities=16% Similarity=0.072 Sum_probs=118.4
Q ss_pred HCCCHHHHHHHHHHHHHHHHhcccCCCCchHH---HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChh
Q 016114 155 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---ENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS 227 (395)
Q Consensus 155 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (395)
-.|+-+.++..+.++.+. .+...+.. .-.|+.....+.. ....+.|.+.+...... .|.
T Consensus 200 F~gdR~~GL~~L~~~~~~------~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~ 265 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS------ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPN 265 (468)
T ss_pred cCCcHHHHHHHHHHHhcc------CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCC
Confidence 468888899988887651 11222221 1112222222222 23445566666655543 456
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
....+...|+++...|+.++|++.+++++....+. ..-...++..++.++..+++|++|..++.+..+.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------- 334 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------- 334 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------
Confidence 66677889999999999999999999988533222 1123456789999999999999999999888762
Q ss_pred CChHHHHHHHHHHHHHHHcCCc-------hhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114 308 DSLPVGEALDCLVSIQTRLGED-------DTKLLELLKRVLRIQEREFGSESEEVMLT 358 (395)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 358 (395)
+....+...+..|.++...|+. + +|.+++.++-.+..+..+...|-..-+
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~-~a~~l~~~vp~l~~k~~gk~lp~E~Fv 391 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKK-EAEELFRKVPKLKQKKAGKSLPLEKFV 391 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHH-HHHHHHHHHHHHHhhhccCCCChHHHH
Confidence 2233444566788899999988 7 888899988888877666555543333
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.19 E-value=1.6e-05 Score=49.95 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=52.4
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 235 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 235 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
|..+|...+++++|+.++++++.+ +|.....+...|.++...|++.+|...++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356789999999999999999984 56677788999999999999999999999999754
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.18 E-value=1.9e-05 Score=49.64 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=52.4
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
..+|...+++++|+..+++++.+ +|.....+...|.++..+|++.+|...++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56788999999999999999987 5667888999999999999999999999999976
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.17 E-value=0.00097 Score=58.57 Aligned_cols=175 Identities=19% Similarity=0.126 Sum_probs=115.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCcChHHH---HHHHHHHHHHHHh----hCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114 29 TLENYEKSMLVYQRVINVLESRYGKTSILL---VTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLV 101 (395)
Q Consensus 29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (395)
-.||-+.++..+.++.+- . +-..|.. .-.++.....+.. ....+.|.+.+...... .|.-.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~---~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-E---NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-C---CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcH
Confidence 347888888888877541 1 1112211 1112221111211 23445566666555543 46667
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
..+...|.++...|+.++|++.+++++...... ..-....+..++.++..+.+|++|..++.+..+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------- 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------- 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------
Confidence 778889999999999999999999988543222 12234568899999999999999999999987732
Q ss_pred CchHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHhhhCCCChhH
Q 016114 182 DDSIMENMRIDLAELLHIVGRG-------QEGRELLEECLLITEKYKGKEHPSF 228 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~ 228 (395)
....+...+..|.++...|+. ++|..++.++-....+..+...|..
T Consensus 336 -~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E 388 (468)
T PF10300_consen 336 -KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE 388 (468)
T ss_pred -ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence 222334446788999999999 8888888888777766555444543
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0016 Score=52.26 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=116.8
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 016114 65 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 144 (395)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 144 (395)
-+.+....|++.+|...+.+.++- .|....+...--..++..|+.......+++.+... .++-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345566788999988888887763 45445555555677888898888888888776432 234454455
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (395)
....++..+...|-|++|.+..++++++.+ .+ ..+...++.++...|++.++.+...+.-...+. .
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~-------~D---~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s 242 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINR-------FD---CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----S 242 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCC-------cc---hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----h
Confidence 666778888999999999999999988632 22 233466888999999999999988775443321 1
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
......-+-..|.++...+.++.|+++|..-+
T Consensus 243 ~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 243 WMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 11223334566788888899999999997643
No 224
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.08 E-value=0.00094 Score=44.54 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=86.7
Q ss_pred hhhHHhHHH--HHHHcCChHHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 101 VLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 101 ~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
+.+|..|+. -...-|-|++|...+.+++++.+.+.....- -.+.++..|+..+..+|+|++++....+++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 344444443 3455688999999999999997765332211 1456778899999999999999999999999887
Q ss_pred hcccCCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114 175 DSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 222 (395)
Q Consensus 175 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (395)
+......+ -..+..+..+.+..+...|+.++|+..|+.+-++..+..|
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 75434443 2445566688999999999999999999999888765544
No 225
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.08 E-value=0.0053 Score=52.44 Aligned_cols=285 Identities=15% Similarity=0.075 Sum_probs=153.3
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGM 144 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~ 144 (395)
+.+....|+++.-..+.... ..........-+......++++++..+.+++.............. ...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~-----------~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS-----------NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc-----------cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45667888888733322211 111113334445555588999999999999887755433221111 112
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC--
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG-- 222 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 222 (395)
.+..+..+ ....+.+++..+..... ........+.. .--.+...........+..+........
T Consensus 74 ~y~~l~~l-q~L~Elee~~~~~~~~~----------~~~~~~~~l~~---~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~ 139 (352)
T PF02259_consen 74 AYPSLVKL-QQLVELEEIIELKSNLS----------QNPQDLKSLLK---RWRSRLPNMQDDFSVWEPILSLRRLVLSLI 139 (352)
T ss_pred HHHHHHHH-hHHHHHHHHHHHHHhhc----------ccHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHhcc
Confidence 22222211 12222333333321110 00111111100 0001111112223334444444333332
Q ss_pred CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HH
Q 016114 223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY-IR 301 (395)
Q Consensus 223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~ 301 (395)
.........+..++.+..+.|+++.|...+.++..... ........+....+.+....|+..+|+..++..+. ..
T Consensus 140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 11445677889999999999999999999988765211 11112344566778999999999999999988887 22
Q ss_pred HHHc-------------------------CCCChHHHHHHHHHHHHHHHc------CCchhHHHHHHHHHHHHHHhccCC
Q 016114 302 EIAF-------------------------GKDSLPVGEALDCLVSIQTRL------GEDDTKLLELLKRVLRIQEREFGS 350 (395)
Q Consensus 302 ~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~------~~~~~~A~~~~~~al~~~~~~~~~ 350 (395)
.... .......+.++..+|...... +..+ ++...|++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~-~~~~~~~~a~~~------- 287 (352)
T PF02259_consen 216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD-EILKYYKEATKL------- 287 (352)
T ss_pred hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHHHh-------
Confidence 2210 011133455666677776666 6666 788888888875
Q ss_pred CCHHHHHHHHHHHHHHHHhcch-----------------hhhchhhHHHHHHHHH
Q 016114 351 ESEEVMLTLKKVVSYLDKLGRK-----------------EEKFPLKKRLSNLRMK 388 (395)
Q Consensus 351 ~~~~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~~~~~ 388 (395)
.|....++..+|..+...=+. ..|+..|-+++..+++
T Consensus 288 -~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 288 -DPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred -ChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 344456777777766554221 2356666666665554
No 226
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0042 Score=49.97 Aligned_cols=165 Identities=13% Similarity=0.001 Sum_probs=123.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHH
Q 016114 108 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 187 (395)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (395)
+.+....|++.+|-...++.++- .|....+...--..++..|+...-...+++.+.. -+++.|...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~------wn~dlp~~s 175 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK------WNADLPCYS 175 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc------cCCCCcHHH
Confidence 44566788999998888888764 5555555555667788899998888888887653 246667777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114 188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 267 (395)
Q Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 267 (395)
.+....+..+...|-|++|++..++++++ ++....+...++.++...|++.++.++..+.-+..+.. .
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~ 243 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----W 243 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----h
Confidence 77778899999999999999999999986 34456677788999999999999999887654433211 1
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114 268 QSISFPMLHLGITLYHLNRDKEAEKLVLEAL 298 (395)
Q Consensus 268 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 298 (395)
......|..-|.++...+.++.|++.|.+-+
T Consensus 244 mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 244 MLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 1122334556788888899999999998654
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.04 E-value=0.0041 Score=49.76 Aligned_cols=230 Identities=27% Similarity=0.337 Sum_probs=161.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114 30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 109 (395)
Q Consensus 30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 109 (395)
.+.+..+...+...+..... ..........+..+...+.+..+...+...... ...+.....+...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 103 (291)
T COG0457 36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL 103 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence 34555555555555443211 012455667788899999999999999888764 124566677888899
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Q 016114 110 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 188 (395)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (395)
.+...+++..+...+.+++.... .+ .......+. ++...|+++.|...+.+++... +.......
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~ 168 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALELD-------PELNELAE 168 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCccchHH
Confidence 99999999999999988876421 11 122233333 8999999999999999995521 11112233
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114 189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 268 (395)
Q Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 268 (395)
.....+..+...++++.++..+.+++...... ....+..++..+...++++.|...+..++... +
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 233 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------P 233 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------c
Confidence 44556666888899999999999988863221 45667888999999999999999999988742 2
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
.....+..++..+...+.++++...+.+++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 244556677777777778999999988887754
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.03 E-value=0.0051 Score=50.59 Aligned_cols=279 Identities=15% Similarity=0.070 Sum_probs=178.8
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114 7 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 86 (395)
Q Consensus 7 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 86 (395)
..+..+.+.+..++ -+..-...|+++.|.+-|+-++.- .....--+..|-.--...|..+.|..+-+++.
T Consensus 112 ~llssDqepLIhlL--eAQaal~eG~~~~Ar~kfeAMl~d--------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa 181 (531)
T COG3898 112 KLLSSDQEPLIHLL--EAQAALLEGDYEDARKKFEAMLDD--------PETRLLGLRGLYLEAQRLGAREAARHYAERAA 181 (531)
T ss_pred hhhhccchHHHHHH--HHHHHHhcCchHHHHHHHHHHhcC--------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555655555443 355566789999999999887642 12222233444444567899999999999887
Q ss_pred HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HHCCCHHHHHHH
Q 016114 87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK-CANGNAEEAVEL 165 (395)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~ 165 (395)
.. .|....+....-......|+++.|+++.+...... ..+++..+...+-..-+... ....+...|...
T Consensus 182 ~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 182 EK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred hh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 75 34555555555566778999999999998776542 22222222222221112211 223457778887
Q ss_pred HHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH
Q 016114 166 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 245 (395)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 245 (395)
..++.++. ++. .-.-..-+..++..|+..++-.+++.+.+. ..||+.... |....--
T Consensus 252 A~~a~KL~-------pdl---vPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~l-------Y~~ar~g 308 (531)
T COG3898 252 ALEANKLA-------PDL---VPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALL-------YVRARSG 308 (531)
T ss_pred HHHHhhcC-------Ccc---chHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHH-------HHHhcCC
Confidence 77777753 221 112244678999999999999999887663 256665443 4443334
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114 246 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 325 (395)
Q Consensus 246 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (395)
+.+..-++++-.+. .-.|+........+..-...|++..|..--+.+..+. | ....+..|+.+-..
T Consensus 309 dta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--------p-res~~lLlAdIeeA 374 (531)
T COG3898 309 DTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--------P-RESAYLLLADIEEA 374 (531)
T ss_pred CcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--------c-hhhHHHHHHHHHhh
Confidence 45566666665532 2245666777888999999999999988877776543 1 22456778888766
Q ss_pred c-CCchhHHHHHHHHHHHH
Q 016114 326 L-GEDDTKLLELLKRVLRI 343 (395)
Q Consensus 326 ~-~~~~~~A~~~~~~al~~ 343 (395)
. |+.. +....+.+++..
T Consensus 375 etGDqg-~vR~wlAqav~A 392 (531)
T COG3898 375 ETGDQG-KVRQWLAQAVKA 392 (531)
T ss_pred ccCchH-HHHHHHHHHhcC
Confidence 5 8877 899999888863
No 229
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00051 Score=57.82 Aligned_cols=245 Identities=12% Similarity=0.003 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH----
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV---- 134 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---- 134 (395)
....++.|.+++....+.+|+..........+... ....+......-..+....+.++|+.++.-.-.+....
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~ 176 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL 176 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44577788888888899999888777666554432 11222333344455666677778877654333322111
Q ss_pred hC----------CCChhHHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHH
Q 016114 135 YG----------ENDGRVGMA-----------MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 193 (395)
Q Consensus 135 ~~----------~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 193 (395)
.| ..+|..+.. ...-...+....+..-+..-.+.++.+. .+.+ ......
T Consensus 177 ~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-------~~s~---~~l~LK 246 (696)
T KOG2471|consen 177 VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-------QDSS---MALLLK 246 (696)
T ss_pred cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-------CCCc---HHHHHH
Confidence 01 001111110 1111112222223333333333332221 1222 223456
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHH-HHHHhhCCCC---
Q 016114 194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLD-IMTKTVGPDD--- 267 (395)
Q Consensus 194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~--- 267 (395)
+..++..|++.+|.+.+... .+.+...+.-.|. ....++++|.++...|.+.-+..+|.+|+. ...+....-.
T Consensus 247 sq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 78888999999999887643 2222222222333 334568999999999999999999999995 4333322111
Q ss_pred ------cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114 268 ------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 325 (395)
Q Consensus 268 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (395)
.....++++.|..|...|++-.|.++|.++...+.. .| ..|..++.++..
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nP---rlWLRlAEcCim 381 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NP---RLWLRLAECCIM 381 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----Cc---HHHHHHHHHHHH
Confidence 123457889999999999999999999999998743 23 346677777654
No 230
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.99 E-value=0.0016 Score=43.44 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=84.5
Q ss_pred HHHHHHHHHH--HHHhhCchhHHHHHHHHHHHHHHHhcCCCChh----hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 58 LVTSLLGMAK--VLGSIGRAKKAVEIYHRVITILELNRGTESAD----LVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 58 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
++.+|..|+. -....|-|++|...++++.++.+.++.....+ .+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3444444443 34556899999999999999987765332211 24577789999999999999999999999988
Q ss_pred HHHhCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 132 TKVYGENDGR----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 132 ~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.+.. .-+.+ .+.+.++.+..+...|+.++|+..|+.+-++....
T Consensus 86 NRRG-EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 86 NRRG-ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred hhcc-ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 7763 22222 45566788999999999999999999999987654
No 231
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.96 E-value=8.4e-05 Score=59.41 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=82.9
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH
Q 016114 63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 142 (395)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 142 (395)
-..|+-|+.+|.|++|+.+|.+++.. .|..+..+.+.+..|++..+|..|+.-+..|+.+ +...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence 45688999999999999999999876 5666778889999999999999999999999987 3445
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
..+|...+..-..+|...+|.+-++.++++
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 678889999999999999999999999985
No 232
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.96 E-value=4.2e-05 Score=61.05 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
+-..|+-|+.+|.|++|+.+|.+++... |.....+.+.+..|+....|..|+.-+..|+.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 4567999999999999999999998863 333445678899999999999999999999987 345
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
...+|...+..-..+|+..+|.+-++.++++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 6788999999999999999999999999987
No 233
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0001 Score=55.76 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+.-+..-|+.++....|+.|+..|.+++.+ +|..+..+.+-+.++.+..+++.+..-..+++++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------- 73 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------- 73 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-------
Confidence 3444567788899999999999999999986 3566677888999999999999999999999997
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
.|..+..++.+|........|++|+..++++..+.+..
T Consensus 74 -~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 -DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred -ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 67888999999999999999999999999999887664
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.92 E-value=0.0017 Score=47.23 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh--------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 85 (395)
+...|......|+.+.++..+.+++.+.+..+-++. .....+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344566666778999999999999988754332221 134556777888889999999999999999
Q ss_pred HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
+.. +|..-.++..+..++...|+..+|...|++......+-+|..
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 987 677778889999999999999999999999999888766543
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.86 E-value=0.005 Score=52.46 Aligned_cols=142 Identities=18% Similarity=0.094 Sum_probs=78.9
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114 111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 190 (395)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (395)
..+..+...-++.-.+|+++ +|+.+.++..|+. .......+|..+++++++..+..
T Consensus 178 AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~-------------- 233 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI--------NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEAS-------------- 233 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHh--------------
Confidence 34555666677777777766 3555556655553 22334677788888877765432
Q ss_pred HHHHHHH--HHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114 191 IDLAELL--HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 268 (395)
Q Consensus 191 ~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 268 (395)
++... ...|..-+.. .. .+......+...+|.+..+.|+.++|++.++..++.. ...
T Consensus 234 --lg~s~~~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~ 292 (539)
T PF04184_consen 234 --LGKSQFLQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNL 292 (539)
T ss_pred --hchhhhhhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------Ccc
Confidence 11100 0111110000 00 0111123445567777788888888888777766521 112
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114 269 SISFPMLHLGITLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 297 (395)
+...+..+|..++...+.+.++...+.+-
T Consensus 293 ~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 293 DNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34556777778888888887777666653
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.84 E-value=0.0019 Score=47.06 Aligned_cols=109 Identities=23% Similarity=0.153 Sum_probs=77.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC--C------------hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 193 LAELLHIVGRGQEGRELLEECLLITEKYKGKE--H------------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
.|......|+.+.++..+++++.++...+-++ . .....+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 35555566788888888888887765332111 0 122345667788889999999999999999984
Q ss_pred HHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCC
Q 016114 259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 309 (395)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 309 (395)
+|..-.++..+..++...|+..+|...|++......+-+|...
T Consensus 92 --------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 92 --------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp --------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred --------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 6777788899999999999999999999999998887766544
No 237
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.83 E-value=0.00028 Score=54.38 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=80.0
Q ss_pred hcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCC-----CHHHHH
Q 016114 283 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE-----SEEVML 357 (395)
Q Consensus 283 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~ 357 (395)
....+++|++.|.-|+-...- .+..+...+..+..+|.+|...|+.+ ....++++|++.+.+.+... ..+...
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~-~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEE-NEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 345678899999888876543 34455577888899999999999977 78888888888777655322 235567
Q ss_pred HHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
+++.+|.+..+.|++++|..+|.+++...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 88999999999999999999999988644
No 238
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.83 E-value=0.0015 Score=50.53 Aligned_cols=102 Identities=24% Similarity=0.202 Sum_probs=81.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC-----Chh
Q 016114 153 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPS 227 (395)
Q Consensus 153 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~ 227 (395)
+.....+++|+..|.-|+-...- .+.++...+.++..+|.+|...|+.+....++++|+..+.+..... ..+
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~---~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQI---KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 34456788999999988877654 3456667788899999999999998888888888888877665322 224
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
....++.+|.+..+.|++++|..+|.+++.
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 566788999999999999999999999887
No 239
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00073 Score=51.58 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc---ChH-------HHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---TSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 85 (395)
...++..-|+-++..|+|.+|...|+.|+...+...-. ..| .....+.+.+.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999877655322 222 23456788999999999999999999988
Q ss_pred HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
+.. +|....+++..|......-+..+|..-|.+++++
T Consensus 257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 875 7888899999999999999999999999999986
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.0041 Score=45.98 Aligned_cols=100 Identities=17% Similarity=0.047 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114 188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 267 (395)
Q Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 267 (395)
.....++..+...|++++|+..++.++.... +......+-.+|+.+...+|.+++|...+..... +
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------E 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------c
Confidence 3446788999999999999999999885421 2223445567899999999999999988765432 2
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 268 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 268 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
..........|.++...|+-++|+..|++++...
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 2333445667999999999999999999999864
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00017 Score=54.64 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 141 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 141 (395)
+..-|..++...+|..|+..|.+++.+ +|..+..+.+-+.++++..+++.+..-..+++++ .|.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 444577788888999999999999886 6777788999999999999999999999999987 677
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.+...+.+|........+++|+..+.++..+.+..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999998875
No 242
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.011 Score=46.44 Aligned_cols=228 Identities=14% Similarity=0.095 Sum_probs=150.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 100 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (395)
..+++-....+++++|+..|.+.+.-............-.+...++.+|...|++..--+......+...... .|..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhH
Confidence 3466677788999999999998876411110011123345677899999999999877777666666554432 3444
Q ss_pred hhhHHhHHHHH-HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 101 VLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 101 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
..+...+-.-+ .....++.-+..+...++...+.. ...-....-..+..+++..|+|.+|+......+.-+++.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--- 158 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--- 158 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---
Confidence 44444333322 234567777788888777765420 011122334567889999999999999999988877764
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH-HHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
.+.+.+..++..-..+|....+..++...+..|.......+ -+|....-+ ..-|..++...+|..|..+|-++++-
T Consensus 159 -DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y--CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 159 -DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY--CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred -cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC--CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 45556666777778899999999888888877766655444 223322212 22256667788999999999999874
Q ss_pred H
Q 016114 259 M 259 (395)
Q Consensus 259 ~ 259 (395)
+
T Consensus 236 f 236 (421)
T COG5159 236 F 236 (421)
T ss_pred c
Confidence 4
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.0069 Score=44.83 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=96.6
Q ss_pred HHHHHHHhhhcHH---HHHHHHHHHHHHHHHhcC-----------c--ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114 22 HMGSMYSTLENYE---KSMLVYQRVINVLESRYG-----------K--TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85 (395)
Q Consensus 22 ~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~-----------~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 85 (395)
..|+-|+...+.+ +|-..|++++........ . ....-..+...++..+...|++++|+..++.+
T Consensus 36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~ 115 (207)
T COG2976 36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4455666555444 677777777765432111 0 11122334556788899999999999999998
Q ss_pred HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 016114 86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 165 (395)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 165 (395)
+... .|......+-.+|+.+...+|.+++|+..+.... ++..........|.++...|+-++|...
T Consensus 116 l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~w~~~~~elrGDill~kg~k~~Ar~a 181 (207)
T COG2976 116 LAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EESWAAIVAELRGDILLAKGDKQEARAA 181 (207)
T ss_pred Hccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cccHHHHHHHHhhhHHHHcCchHHHHHH
Confidence 8652 2333445567789999999999999998877543 2333445566789999999999999999
Q ss_pred HHHHHHH
Q 016114 166 YKKALRV 172 (395)
Q Consensus 166 ~~~a~~~ 172 (395)
|+++++.
T Consensus 182 y~kAl~~ 188 (207)
T COG2976 182 YEKALES 188 (207)
T ss_pred HHHHHHc
Confidence 9999985
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.76 E-value=4e-05 Score=40.07 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
++..||.+|..+|++++|+.+|++++.+.++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 467899999999999999999999998887654
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.75 E-value=0.018 Score=48.16 Aligned_cols=207 Identities=13% Similarity=0.139 Sum_probs=122.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114 30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 109 (395)
Q Consensus 30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 109 (395)
...+..+..-..+.+...+..++...........++-..|....+|+.-+.+.+..-.+ ...+-+....+....|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 33444444445555555554444322233445556667788888888888777654433 11122334455667788
Q ss_pred HHHH---cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhcc
Q 016114 110 LFIK---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 110 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
++.+ .|+.++|+..+..++.. .......++..+|.+|-. ....++|+..|.++.++.
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---- 256 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---- 256 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC----
Confidence 8888 89999999999887543 233344567777777643 224677888888877642
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHH---hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL-LITE---KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
+ ... .-.|++.++...|...+...-+++.. .+.. +....+.....+....++.+..-.|++++|.+.++
T Consensus 257 ---~--~~Y--~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 257 ---P--DYY--SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred ---c--ccc--chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 111 11567777777776444433333332 1111 11111222334555677888888999999999999
Q ss_pred HHHHH
Q 016114 254 ICLDI 258 (395)
Q Consensus 254 ~a~~~ 258 (395)
++...
T Consensus 330 ~~~~l 334 (374)
T PF13281_consen 330 KAFKL 334 (374)
T ss_pred HHhhc
Confidence 98873
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.029 Score=50.08 Aligned_cols=125 Identities=13% Similarity=0.035 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHH-----HHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINV-----LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
..|..++......-.++.|...|-++-+. .++. + ....--...+.+-.--|+|++|++.|-.+-..
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-~----~i~s~~~q~aei~~~~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-R----TIHSKEQQRAEISAFYGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-h----hhhhHHHHhHhHhhhhcchhHhhhhhhccchh----
Confidence 34556677666666677776666554221 1110 0 00000112344444557788887777543211
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 169 (395)
+.+ ..++...|++-.-.++++..- .+.++.....++.++|..+..+..+++|.++|...
T Consensus 764 ------DLA------ielr~klgDwfrV~qL~r~g~------~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 764 ------DLA------IELRKKLGDWFRVYQLIRNGG------SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ------hhh------HHHHHhhhhHHHHHHHHHccC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 123344455444333332210 01223335567777777777777777777777664
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.72 E-value=0.024 Score=48.54 Aligned_cols=128 Identities=17% Similarity=0.154 Sum_probs=95.0
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-------
Q 016114 68 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------- 140 (395)
Q Consensus 68 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------- 140 (395)
-..+..+...-++.-.+|+++ .|+.+.+|..|+.- ......+|+.+++++++..+..++.+..
T Consensus 177 ~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 334566777888888888887 56777777776642 2344789999999999988776554311
Q ss_pred ----------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114 141 ----------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 210 (395)
Q Consensus 141 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (395)
....+...+|.+..+.|+.++|++.++..++.. + ......++.+|..++...+.|.++..++
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-------p-~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-------P-NLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-------C-ccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 123455779999999999999999999988742 1 2233557899999999999999999887
Q ss_pred HHH
Q 016114 211 EEC 213 (395)
Q Consensus 211 ~~a 213 (395)
.+-
T Consensus 319 ~kY 321 (539)
T PF04184_consen 319 AKY 321 (539)
T ss_pred HHh
Confidence 763
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.70 E-value=0.023 Score=47.67 Aligned_cols=205 Identities=12% Similarity=0.100 Sum_probs=118.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHH
Q 016114 116 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 195 (395)
Q Consensus 116 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~ 195 (395)
.+..+.....+.+...+..++........+..++-..|....+|+.-+.+.+..-.+ +..+......+....|.
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~------p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL------PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc------CccchhcchHHHHHHHH
Confidence 344444555555555555443222223445566667788888988877777665443 11112223344567788
Q ss_pred HHHH---cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh---------hcHHHHHHHHHHHHHHHHHhh
Q 016114 196 LLHI---VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------KNFVEAERLLRICLDIMTKTV 263 (395)
Q Consensus 196 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~ 263 (395)
++.+ .|+.++|+..+..++.. .......++..+|.+|... ...++|+..|.++.++
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~----- 255 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI----- 255 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-----
Confidence 8888 89999999998886543 2233345666778777543 2355666666666553
Q ss_pred CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114 264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK----DSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 339 (395)
+ ++ ...-.|++.++...|...+...-.++.........+. +..........++.+..-.|+++ +|...+++
T Consensus 256 --~-~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~-ka~~a~e~ 330 (374)
T PF13281_consen 256 --E-PD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYE-KAIQAAEK 330 (374)
T ss_pred --C-cc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHH-HHHHHHHH
Confidence 2 22 1233567777777776554443344433111111111 11122233455677778889999 99999999
Q ss_pred HHHH
Q 016114 340 VLRI 343 (395)
Q Consensus 340 al~~ 343 (395)
++.+
T Consensus 331 ~~~l 334 (374)
T PF13281_consen 331 AFKL 334 (374)
T ss_pred Hhhc
Confidence 8865
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.68 E-value=0.0068 Score=45.43 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
...+..++..+|..|.+.|+.++|++.|.++.+.. ........++.++..+....+++.....+..++-....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 45577889999999999999999999999987743 34455667778899999999999999999999988876
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
... +..........-|..++..++|.+|...|-.+..
T Consensus 105 ~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 105 KGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 522 2222222333456667788999999998877654
No 250
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00085 Score=53.64 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+...+.-+-.-|+-|+...+|..|+..|.+.+..- .++....+..|.+.+.+....|+|..|+.-+.+++.+
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 34477778889999999999999999999998752 3344456778999999999999999999999999886
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
.|....+++.-+.++..+.++.+|..+++..+.+.
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 67788999999999999999999999999887663
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.66 E-value=0.0087 Score=44.87 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=88.0
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
......++..+|..|...|+.++|.+.|.++.+.+. ........+.++..+....+++.....+..++-.....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~- 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK- 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence 456677899999999999999999999999877532 23456778888999999999999999999999988764
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
+.+..........-|..+...++|.+|-..|-.+...
T Consensus 106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2344444445556677788889999999988776543
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.64 E-value=5e-05 Score=39.20 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
.++..+|.++..+|++++|+..|++++++.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999999875
No 253
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00069 Score=51.69 Aligned_cols=113 Identities=16% Similarity=0.019 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC---CCChHH-------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG---KDSLPV-------GEALDCLVSIQTRLGEDDTKLLELLKRVL 341 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~al 341 (395)
.++..-|+-++..|++.+|...|..|+...+...- |..|.. ...+.+.+.++...|++- ++++.....+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y-evleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY-EVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH-HHHHHHHHHH
Confidence 45566788899999999999999999988765532 223332 334677889999999888 8887777776
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhhh
Q 016114 342 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV 393 (395)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 393 (395)
. .+|.+..+++.-|.+....=+..+|..-|.+++++.+.+..++
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 4 4677889999999999999999999999999999999887765
No 254
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.025 Score=45.75 Aligned_cols=299 Identities=13% Similarity=0.119 Sum_probs=184.4
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH----HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114 22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
..+.......++++++..+.+.+...... ..++ ..-.+...+|..+...|+..+-..........+.... .
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---K 83 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---K 83 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---h
Confidence 34444556667788888888877642211 1111 2345677899999999999888777777666554432 3
Q ss_pred hhhhhhHHhHHHHHH-HcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 98 ADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
+..+.....+-..+. ..+..+.-+.++..+++...+. .... .-..-..+..+|...++|.+|+......+.-.++
T Consensus 84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 334444444444333 3345667778888888876552 1111 2223456888999999999999999999888877
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH-HHHHHHHHhhhcHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~ 254 (395)
. .+...+..++..-..+|....+..+|...+..|.......+ -+|..-..+ ..-|.++....+|..|..+|-+
T Consensus 161 l----DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY--cpPqlQa~lDLqSGIlha~ekDykTafSYFyE 234 (411)
T KOG1463|consen 161 L----DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY--CPPQLQATLDLQSGILHAAEKDYKTAFSYFYE 234 (411)
T ss_pred c----ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc--cCHHHHHHHHHhccceeecccccchHHHHHHH
Confidence 4 45556666677778899999999999988887776655544 233332222 2336667777899999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 334 (395)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 334 (395)
|.+-+... .+++....++..+-.+-...+..++--..+.-=..+. . ..+ ...++..++..+.+ ..+
T Consensus 235 AfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g~-~i~AmkavAeA~~n------RSL 300 (411)
T KOG1463|consen 235 AFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AGR-DIDAMKAVAEAFGN------RSL 300 (411)
T ss_pred HHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cCc-chHHHHHHHHHhcC------CcH
Confidence 98855443 2233444555555556666677766544443211111 1 111 22445556655533 233
Q ss_pred HHHHHHHHHHHhcc
Q 016114 335 ELLKRVLRIQEREF 348 (395)
Q Consensus 335 ~~~~~al~~~~~~~ 348 (395)
.-|++|+.-++..+
T Consensus 301 kdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 301 KDFEKALADYKKEL 314 (411)
T ss_pred HHHHHHHHHhHHHH
Confidence 45666665554433
No 255
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.59 E-value=0.0025 Score=42.07 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=61.4
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH
Q 016114 111 FIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 189 (395)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (395)
....|++.+|.+.+.+..+......... ......+..++|.++...|++++|+..+++++.+.++. .|...+..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~----~D~~~l~~a 83 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN----GDRRCLAYA 83 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----CCHHHHHHH
Confidence 4578999999999999998876643222 11355678889999999999999999999999999874 455555555
Q ss_pred HHHHHH
Q 016114 190 RIDLAE 195 (395)
Q Consensus 190 ~~~la~ 195 (395)
+..+..
T Consensus 84 l~~~~~ 89 (94)
T PF12862_consen 84 LSWLAN 89 (94)
T ss_pred HHHHHH
Confidence 444443
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.57 E-value=0.00031 Score=36.67 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
++.+||.+|...|++++|+.+|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999999877653
No 257
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.57 E-value=0.063 Score=49.38 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=108.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHH
Q 016114 113 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 192 (395)
Q Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 192 (395)
..+++.+|.....+.+.- +|....+...-|.+..++|+.++|..+++..-. ..+++.. .+..
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-------~~~~D~~---tLq~ 82 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEALYG-------LKGTDDL---TLQF 82 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-------CCCCchH---HHHH
Confidence 456788888877777654 566666666778889999999999966554322 2233332 3456
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH
Q 016114 193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 272 (395)
Q Consensus 193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 272 (395)
+-.+|..+|++++|..+|++++.. .|. -..+..+-.+|.+.+.|.+-.+ .++++++.. +..+...
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK~~--pk~~yyf- 147 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK---AALQLYKNF--PKRAYYF- 147 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC--CcccchH-
Confidence 788999999999999999999874 233 3445555566777666654332 233333322 2333332
Q ss_pred HHHHHHHHHHhcCChHHHHH-H-HHHHHHHHHHHcCCC-ChH-HHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114 273 PMLHLGITLYHLNRDKEAEK-L-VLEALYIREIAFGKD-SLP-VGEALDCLVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 273 ~~~~la~~~~~~g~~~~A~~-~-~~~al~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 339 (395)
|..+..+.......++... . .--|-.+....+... ... .++. ...-.+...+|+++ +|.+.+..
T Consensus 148 -WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~-eal~~l~~ 215 (932)
T KOG2053|consen 148 -WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI-ILYLLILELQGKYQ-EALEFLAI 215 (932)
T ss_pred -HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH-HHHHHHHHhcccHH-HHHHHHHH
Confidence 3333444444444444433 1 111111222222222 111 1221 22234566778888 88887743
No 258
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.57 E-value=0.0018 Score=42.78 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=60.9
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 016114 239 YSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD 317 (395)
Q Consensus 239 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 317 (395)
....|++.+|.+.+.+..+......... ......++.++|.++...|++++|...+++++++.++. .+......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3567999999999999998766553222 11345677889999999999999999999999999886 34444444555
Q ss_pred HHHHH
Q 016114 318 CLVSI 322 (395)
Q Consensus 318 ~l~~~ 322 (395)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 54443
No 259
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0026 Score=50.97 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 220 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (395)
..+..+..-|+-|+..++|..|...|.++++. ..+++...+..|.|.|.+....|+|..|+.-..+++.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 36777888899999999999999999999885 34677788889999999999999999999999998874
Q ss_pred hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 221 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
.|....+++.-|.++....++.+|..+.+..+.+.
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 56677888899999999999999999998877643
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.49 E-value=0.066 Score=48.55 Aligned_cols=283 Identities=12% Similarity=0.021 Sum_probs=163.9
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh-----CchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114 32 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESADLVLPLFS 106 (395)
Q Consensus 32 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 106 (395)
+...|..+++.+.+. ....+...+|.++..- .+.+.|+.+++.+...+++.. ......+.+.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 356777787776553 2344566677776544 689999999999987322211 1123457788
Q ss_pred HHHHHHHcC-----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhccc
Q 016114 107 LGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIKDSNY 178 (395)
Q Consensus 107 l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~ 178 (395)
+|.+|.... +...|..++.++-.. ++| .+...+|.++.... ++..|..+|..|....
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----- 358 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----- 358 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence 999998754 667788888888764 233 46777888887655 5789999999987631
Q ss_pred CCCCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh-hcHHHHHHHHH
Q 016114 179 MSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLR 253 (395)
Q Consensus 179 ~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~ 253 (395)
. ..+...+|.+|..- -+...|..++.++.+. .++. +...++.++..- ++++.+...+.
T Consensus 359 ---~----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~~ 421 (552)
T KOG1550|consen 359 ---H----ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALYL 421 (552)
T ss_pred ---C----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHHH
Confidence 1 23446677776542 3678999999988764 2222 222233322211 66666655554
Q ss_pred HHHHHHHHhhCCCCcchHHHHH-HHHHHHHhc----CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc--
Q 016114 254 ICLDIMTKTVGPDDQSISFPML-HLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL-- 326 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 326 (395)
.......+ .+.....+. ......... .+...+...+.++.. ..+ ..+...|+.+|..-
T Consensus 422 ~~a~~g~~-----~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-------~g~---~~a~~~lgd~y~~g~g 486 (552)
T KOG1550|consen 422 YLAELGYE-----VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA-------QGN---ADAILKLGDYYYYGLG 486 (552)
T ss_pred HHHHhhhh-----HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh-------ccC---HHHHhhhcceeeecCC
Confidence 44332111 111111111 111111111 133344444444322 222 23456777777654
Q ss_pred -C-CchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh-c--chhhhchhhHHHHHHH
Q 016114 327 -G-EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL-G--RKEEKFPLKKRLSNLR 386 (395)
Q Consensus 327 -~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~a~~~~ 386 (395)
+ +++ .|...|.++..- . .....++|.++..- | +...|..++.++.+..
T Consensus 487 ~~~d~~-~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 487 TGRDPE-KAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred CCCChH-HHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 3 355 788888877642 1 67788888887652 1 1567777777776543
No 261
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.49 E-value=0.052 Score=46.38 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-IT 217 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~ 217 (395)
.......+...+.+....|+++.|...+.++...... .......+....+.+....|+..+|+..++..+. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS------SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999988764321 1111233446678999999999999999988887 22
Q ss_pred Hhhh-------------------------CCCChhHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHhhCCC
Q 016114 218 EKYK-------------------------GKEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 218 ~~~~-------------------------~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~ 266 (395)
.... .......+.++..+|...... +..+++...|..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 287 (352)
T PF02259_consen 216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-------- 287 (352)
T ss_pred hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------
Confidence 2210 011123345556666666666 6777777777777764
Q ss_pred CcchHHHHHHHHHHHHh
Q 016114 267 DQSISFPMLHLGITLYH 283 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~ 283 (395)
.|....++..+|..+..
T Consensus 288 ~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 288 DPSWEKAWHSWALFNDK 304 (352)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 34455566767665554
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.49 E-value=0.00036 Score=35.88 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINV 46 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 46 (395)
+.+++.+|.+|..+|++++|+..|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 467899999999999999999999999987
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.43 E-value=0.00011 Score=37.94 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
.++..+|.++..+|++++|+.+|++++.+.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999998764
No 264
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0088 Score=48.87 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHcCCCC
Q 016114 231 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFGKDS 309 (395)
Q Consensus 231 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 309 (395)
+|..+.....+.+..+.|..+|.+|+. .......+|...|.+-.. .++.+.|...|+.+++.+ +..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence 455666777778889999999999864 334455677888888666 566666999999999876 333
Q ss_pred hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 310 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
+. .+......+...++.+ .|..+|++++... +.......++......-...|+.+....+.+++.+..++
T Consensus 70 ~~---~~~~Y~~~l~~~~d~~-~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 70 PD---FWLEYLDFLIKLNDIN-NARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HH---HHHHHHHHHHHTT-HH-HHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HH---HHHHHHHHHHHhCcHH-HHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 43 3445556778889888 9999999998531 111213567777788888889999998888888876544
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.39 E-value=0.00055 Score=35.18 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVL 47 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 47 (395)
+.+++.+|.+++..|++++|+.+|++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4678999999999999999999999999873
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.38 E-value=0.00062 Score=37.49 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 109 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 109 (395)
.++..+|..|...|++++|+..|+++++. .|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35778999999999999999999999987 5666667766664
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00054 Score=37.74 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=33.5
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 151 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 151 (395)
.++..+|..|...|++++|+..|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999987 3444455665553
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.048 Score=48.77 Aligned_cols=63 Identities=21% Similarity=0.083 Sum_probs=32.7
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHH-----HHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKI-----YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 169 (395)
..+..++......-.++-|+..|-+.-.. .++.. ....--...+.+-.--|++++|.+.|-.+
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~-----~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLR-----TIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhh-----hhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 45666677666666777777776654221 11110 00001122344445567788887777543
No 269
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.15 Score=47.98 Aligned_cols=90 Identities=11% Similarity=-0.018 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHH--HHH---------------hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 016114 232 LLNLAASYSRSKNFVEAERLLRICLDI--MTK---------------TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 294 (395)
Q Consensus 232 ~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~---------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 294 (395)
+..|+..+...|+|..|.+..++|-.+ +++ +.|-+-.-.+.-+-.+...|...|-+++-+.++
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 456677777778888887777665321 111 111111122334556777888889888888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCch
Q 016114 295 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 330 (395)
Q Consensus 295 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (395)
+.++.+-+.. .-.+..||.+|.+-. ++
T Consensus 1303 Ea~LGLERAH--------MgmfTELaiLYskyk-p~ 1329 (1666)
T KOG0985|consen 1303 EAGLGLERAH--------MGMFTELAILYSKYK-PE 1329 (1666)
T ss_pred HhhhchhHHH--------HHHHHHHHHHHHhcC-HH
Confidence 8777654332 123445676766543 44
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.30 E-value=0.00028 Score=36.15 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 016114 124 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163 (395)
Q Consensus 124 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 163 (395)
|++++++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6777776 6777889999999999999999986
No 271
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0041 Score=50.79 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114 189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTKTVGPDD 267 (395)
Q Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~ 267 (395)
+|..+.....+.+..+.|..+|.+|.. .......+|...|.+... .++.+.|..+|+.+++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------
Confidence 345566667777778999999999863 223344567778888666 566666999999999853
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114 268 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 345 (395)
Q Consensus 268 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 345 (395)
+.....+......+...|+.+.|..+|++++... +........+......-...|+.+ ....+.+++.+.+.
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~-~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLE-SVRKVEKRAEELFP 138 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhh
Confidence 2233445556677888999999999999998753 111213345666777778889888 78888888877653
No 272
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.22 E-value=0.013 Score=42.99 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNF---VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN----RDKEAEKLVLEA 297 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a 297 (395)
+|.....+++-|.++..+.++ .++..+++.++.-+++.+.- +|....++.++|.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 455677788888888777655 44666677766655554322 5777889999999998765 445666777777
Q ss_pred HHHHHHH
Q 016114 298 LYIREIA 304 (395)
Q Consensus 298 l~~~~~~ 304 (395)
...+++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.22 E-value=0.00045 Score=35.52 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
.++..+|.+|...|++++|...|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5688999999999999999999999999887
No 274
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.12 Score=44.84 Aligned_cols=258 Identities=18% Similarity=0.128 Sum_probs=140.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 100 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (395)
+.....+...++++. ....+++...+....++ +.....-+..+...|+.+.|+..++.+++..- ..-.
T Consensus 235 ~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~g----a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~ 302 (546)
T KOG3783|consen 235 YQFISFVLGTPNPDG--EECEKALKKYRKRYPKG----ALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVK 302 (546)
T ss_pred HHHHHHHcCCCCccH--HHHHHHhHHHHHhCCCC----ccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHH
Confidence 344445555555555 44455555444443332 22334456666777777778888877776211 1123
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHH--------HHCCCHHHHHHHHHHHHH
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAK--------CANGNAEEAVELYKKALR 171 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~a~~ 171 (395)
.-.++.+|.++..+.+|.+|-..+....+.. +...+ .|..++ .++ ...|+-+.|..+++...+
T Consensus 303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~ 374 (546)
T KOG3783|consen 303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE 374 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence 3466778888888888888888877766541 11111 222222 222 223466666666665555
Q ss_pred HHHhcccCCCCch------------------H-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH
Q 016114 172 VIKDSNYMSLDDS------------------I-MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 232 (395)
Q Consensus 172 ~~~~~~~~~~~~~------------------~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (395)
.........|-.. . .+..+..++.++..-... +..-..+.........-.+..+..--+
T Consensus 375 l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~--s~~~l~k~~~~~~~~~~~d~Dd~~lk~ 452 (546)
T KOG3783|consen 375 LLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRM--SKNELEKMRAELENPKIDDSDDEGLKY 452 (546)
T ss_pred HHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccC--ChhhHHHHHHHHhccCCCCchHHHHHH
Confidence 5443100000000 0 000112222222221111 111111211111111111233344456
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 016114 233 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR 301 (395)
Q Consensus 233 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 301 (395)
..+|.++...|+...|..+|...++- ......+..-...+++.+|.++...|. ..++.+++.+|-+..
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 67899999999999999999988864 222334555667899999999999998 999999999987643
No 275
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.20 E-value=0.00041 Score=35.54 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHH
Q 016114 82 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 121 (395)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 121 (395)
|++++++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5677776 6888999999999999999999986
No 276
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.13 E-value=0.035 Score=48.53 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=73.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114 278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 357 (395)
Q Consensus 278 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 357 (395)
|..+..+|+...|.+++..|+.... ......+.+|+.+..+.|-.. .|-.++.+++.+... . .-
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~-da~~~l~q~l~~~~s-----e---pl 677 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHL-DATKLLLQALAINSS-----E---PL 677 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhc-cHHHHHHHHHhhccc-----C---ch
Confidence 4444458999999999999976431 122234678999999999777 899999999987421 2 34
Q ss_pred HHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
..+.+|+++....+.+.|++.|++|++..++
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 5778899999999999999999999876543
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.09 E-value=0.0017 Score=33.31 Aligned_cols=31 Identities=16% Similarity=0.540 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVL 47 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 47 (395)
+.+++.+|.+|...|++++|..+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3578999999999999999999999999874
No 278
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.27 Score=46.38 Aligned_cols=187 Identities=17% Similarity=0.158 Sum_probs=95.5
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
.+|..+|......|...+|++.|-++ ++| ..+.....+....|.|++-++++.-+.+..++.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~----- 1166 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP----- 1166 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc-----
Confidence 34555555555555555555555443 222 123444445555566666665555554433221
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 261 (395)
. +-..|...|.+.++..+-++.+ .|+++.. ....|.-+...|.|+.|.-+|...
T Consensus 1167 ~------id~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~v------ 1220 (1666)
T KOG0985|consen 1167 Y------IDSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNV------ 1220 (1666)
T ss_pred c------chHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHh------
Confidence 0 0012333444445444433221 1222221 223455556666666665555432
Q ss_pred hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----------------HHHcCCCChHHHHHHHHHHHHHH
Q 016114 262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR-----------------EIAFGKDSLPVGEALDCLVSIQT 324 (395)
Q Consensus 262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~ 324 (395)
.-+..|+..+...|+|..|...-++|-... .++.|-+-.-.+.-+..+...|.
T Consensus 1221 ----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1221 ----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH
Confidence 234567788888888888888877764331 11112111111333556677777
Q ss_pred HcCCchhHHHHHHHHHHHH
Q 016114 325 RLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 325 ~~~~~~~~A~~~~~~al~~ 343 (395)
..|-++ +-+.+++.++.+
T Consensus 1291 ~rGyFe-ElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1291 DRGYFE-ELISLLEAGLGL 1308 (1666)
T ss_pred hcCcHH-HHHHHHHhhhch
Confidence 888777 777777666643
No 279
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.08 E-value=0.0077 Score=44.06 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=48.8
Q ss_pred ChhhhhhHHhHHHHHHHcCCh---HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG----NAEEAVELYKKA 169 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a 169 (395)
+|..+..+++-|..+..+.++ .++..+++.++.-++..+. -+|....++.++|.+|...+ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 456677777778777766554 4466666666665554432 25777788999999987654 455666777777
Q ss_pred HHHHHh
Q 016114 170 LRVIKD 175 (395)
Q Consensus 170 ~~~~~~ 175 (395)
.+.+++
T Consensus 100 ~~~Fqk 105 (186)
T PF06552_consen 100 TEYFQK 105 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 280
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.15 Score=41.51 Aligned_cols=283 Identities=11% Similarity=-0.005 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHH-HhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-GSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
.....+|..+...|+.++=..........+... ..+..+.....+-..+ ...+....-+..+..+++...+.. .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence 456789999999999888777776665554433 1233333333333333 233556677777777777665421 1
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.......-..+..+|...++|.+|+......+.-.++. .+.+....++..=...|....+..+|...+..|.......
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 12223345568899999999999999999998888876 3445556666667788899999999988888776654332
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
-.++...+..=..-|..+....+|..|..+|-+|.+-+.... +++....++..+-.+-...+..++--.++..-.
T Consensus 202 ---YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~ 276 (411)
T KOG1463|consen 202 ---YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL 276 (411)
T ss_pred ---ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence 112222233323446666777899999999999988765443 334445555555555555566665544443222
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114 257 DIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 326 (395)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (395)
.+. . .. ....++...+..+.. ..+|+.|+.-|..-+. .+|-+..-+..|-.....+
T Consensus 277 ~l~--y---~g-~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~--------~D~ivr~Hl~~Lyd~lLEk 334 (411)
T KOG1463|consen 277 ALK--Y---AG-RDIDAMKAVAEAFGNRSLKDFEKALADYKKELA--------EDPIVRSHLQSLYDNLLEK 334 (411)
T ss_pred HHh--c---cC-cchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh--------cChHHHHHHHHHHHHHHHH
Confidence 211 1 12 234566667776654 3455555555544332 3344444444454444443
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.73 E-value=0.44 Score=43.39 Aligned_cols=263 Identities=16% Similarity=0.063 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-----chhHHHHHHHHHHH
Q 016114 18 AILLHMGSMYST-----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVIT 87 (395)
Q Consensus 18 ~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~ 87 (395)
.....+|.+|.. ..|.+.|+.++..+.....+... .....+.+.+|.+|.... ++..|..++.++-+
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~---~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT---KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh---hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 344566666653 36899999999999873211100 012235778899988754 66778888888766
Q ss_pred HHHHhcCCCChhhhhhHHhHHHHHHHcC---ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHH
Q 016114 88 ILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAE 160 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 160 (395)
. ....+.+.+|.++..-. ++..|..+|..|... .+ ..+...++.+|.. ..+..
T Consensus 322 ~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 322 L----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred c----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHHHHHhCCCcCCCHH
Confidence 4 34467788888887765 567899999888754 22 2466777777764 35789
Q ss_pred HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhhCCCChhH-HHHHHHHHHH
Q 016114 161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLNLAAS 238 (395)
Q Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~ 238 (395)
.|..++.++.+.. ++. +...++..+..- ++++.+...+....+..-+ .+.. ...+......
T Consensus 382 ~A~~~~k~aA~~g---------~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~-----~~q~~a~~l~~~~~~ 444 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG---------NPS---AAYLLGAFYEYGVGRYDTALALYLYLAELGYE-----VAQSNAAYLLDQSEE 444 (552)
T ss_pred HHHHHHHHHHHcc---------Chh---hHHHHHHHHHHccccccHHHHHHHHHHHhhhh-----HHhhHHHHHHHhccc
Confidence 9999999998742 111 112233332222 6777766665544443211 1111 1111111111
Q ss_pred HHhh----hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114 239 YSRS----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSL 310 (395)
Q Consensus 239 ~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 310 (395)
.... .+...+...+.++.. .....+...+|.+|..- .+++.|...|.++....
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--------- 505 (552)
T KOG1550|consen 445 DLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--------- 505 (552)
T ss_pred cccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---------
Confidence 1111 134445555544433 23345667788877654 45888988888876521
Q ss_pred HHHHHHHHHHHHHHHcCC---chhHHHHHHHHHHH
Q 016114 311 PVGEALDCLVSIQTRLGE---DDTKLLELLKRVLR 342 (395)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~al~ 342 (395)
+...+++|.++..--- .. .|..++.++.+
T Consensus 506 --~~~~~nlg~~~e~g~g~~~~~-~a~~~~~~~~~ 537 (552)
T KOG1550|consen 506 --AQALFNLGYMHEHGEGIKVLH-LAKRYYDQASE 537 (552)
T ss_pred --hHHHhhhhhHHhcCcCcchhH-HHHHHHHHHHh
Confidence 5678889988765321 34 67777776654
No 282
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.73 E-value=0.5 Score=43.92 Aligned_cols=231 Identities=15% Similarity=0.066 Sum_probs=127.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhH
Q 016114 28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL 107 (395)
Q Consensus 28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 107 (395)
...+++.+|.....+.++- +|....+...-|..+.++|+.++|..+++. +.. ..+..-.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~-------~~~~D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEA-LYG-------LKGTDDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hcc-------CCCCchHHHHHH
Confidence 4678888888888877664 344444455567788999999999955543 322 112234567778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHH
Q 016114 108 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 187 (395)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (395)
-.+|..+|++++|..+|++++.. .|. -..+..+=.+|.+.+.|.+-.+. ++++++. . |..+..
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~---~-pk~~yy- 146 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN---F-PKRAYY- 146 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---C-Ccccch-
Confidence 89999999999999999999875 233 34445555666666666543333 3344443 1 232322
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH--HHHHHHHHhhhCCC-Ch-hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114 188 NMRIDLAELLHIVGRGQEGRELL--EECLLITEKYKGKE-HP-SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 263 (395)
Q Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~--~~al~~~~~~~~~~-~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 263 (395)
.|..+..+.......+....-. --|-.......... .. ...... ..-.+...+|++++|.+.+..-+. ...
T Consensus 147 -fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l- 221 (932)
T KOG2053|consen 147 -FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EKL- 221 (932)
T ss_pred -HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhc-
Confidence 2233444555554444444311 01111111211111 11 111221 122456678899999998854332 111
Q ss_pred CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
.+........-...+...++|.+-.+...+.+.
T Consensus 222 ---~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 222 ---TSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred ---cccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 122222223345566677788777666666555
No 283
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.64 E-value=0.07 Score=33.05 Aligned_cols=70 Identities=7% Similarity=0.047 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
-...-|.-++...+.++|+..++++++.. .+.+....++..+..+|...|+|.+.+.+..+=+++.+...
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455666778999999999999999864 34567888899999999999999999999888888876653
No 284
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.62 E-value=0.48 Score=42.42 Aligned_cols=149 Identities=22% Similarity=0.200 Sum_probs=83.4
Q ss_pred hHHHHHHHcCChHHHHHHHHHH------HHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 106 SLGSLFIKEGKAVDAESVFSRI------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
.++.++...|+|.+|.++|.+. ++++.. .-++..+.-+...|..++-....++-.+.....
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~--- 703 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI--- 703 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---
Confidence 4678888899999999988753 333221 124556677777777777666666655555432
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
..|.. -|..+...|+.++|+... +-++++..+.. ......+..++..+.....+.-|.+.|.
T Consensus 704 --kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 704 --KEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred --CCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 22221 355667778888887653 34455544332 1222334445555555555555555555
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 295 (395)
+.-+. ..+..++...++|++|..+.+
T Consensus 772 k~gD~----------------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 772 KMGDL----------------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HhccH----------------HHHhhheeecccchHhHhhhh
Confidence 43221 123344555666666655443
No 285
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.61 E-value=0.0074 Score=31.58 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 52 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 52 (395)
.++..||.+-...++|++|+.-|.+++++.++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999877654
No 286
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.31 Score=39.11 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=89.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (395)
..-+.-....|++.+|...+..++....+ . ..+...++.+|...|+.+.|...+...-.-. ..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~-------~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~ 200 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPE-------N---SEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QD 200 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcc-------c---chHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hh
Confidence 33455667899999999999999986432 2 3445779999999999999988876521110 00
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 306 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 306 (395)
.....+.....++.......+....-.+. ..+|+....-..+|..+...|+.++|.+.+-..+.. ..+
T Consensus 201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~---------aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~ 268 (304)
T COG3118 201 KAAHGLQAQIELLEQAAATPEIQDLQRRL---------AADPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRG 268 (304)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHH---------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccc
Confidence 11111111112222222222222221111 135767778889999999999999998877555443 233
Q ss_pred CCChHHHHHHHHHHHHHHHcCCch
Q 016114 307 KDSLPVGEALDCLVSIQTRLGEDD 330 (395)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~ 330 (395)
..+.. ....+-.++...|..+
T Consensus 269 ~~d~~---~Rk~lle~f~~~g~~D 289 (304)
T COG3118 269 FEDGE---ARKTLLELFEAFGPAD 289 (304)
T ss_pred ccCcH---HHHHHHHHHHhcCCCC
Confidence 33333 2344555666666555
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.42 E-value=0.0027 Score=32.23 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
++++.+|.++...|++++|+..|+++++..|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3678999999999999999999999987655
No 288
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.38 E-value=0.11 Score=32.23 Aligned_cols=66 Identities=18% Similarity=0.088 Sum_probs=52.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114 149 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 149 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (395)
-|.-++...+.++|+..++++++.. .+++....++..+..+|...|++.+.+.+...-+++.++..
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~-------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKI-------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444567888999999999999854 34556677888899999999999999999888888776553
No 289
>PRK14707 hypothetical protein; Provisional
Probab=96.38 E-value=1.5 Score=45.29 Aligned_cols=297 Identities=9% Similarity=-0.003 Sum_probs=155.6
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHH--HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS--LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
.++++.-..++|.++..+-.-+..+...... ++..... -..++.++...++|.+...+-.-+..+...+. +++.
T Consensus 836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~ 911 (2710)
T PRK14707 836 HVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPE 911 (2710)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhc--ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHH
Confidence 4566666666776666655555555444322 1222111 23457777778888887777777777766654 3333
Q ss_pred hhh--hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 100 LVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 100 ~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
... .-..++.++....++.++..+-.-+..+...+. ..+.... .-..+++++...++|.+...+-.-+..+...
T Consensus 912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa--~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~r 989 (2710)
T PRK14707 912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERLS--DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAER 989 (2710)
T ss_pred HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc--cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHH
Confidence 333 234577888888888887666666666666553 2333322 2345677777777877766655555554443
Q ss_pred cccCCCCchH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH--HHHHHHHHHhhhcHHHHHHHH
Q 016114 176 SNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLL 252 (395)
Q Consensus 176 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~ 252 (395)
. ..+... ....-..++.++....++.++-.+-.-+..+..... ..+..... -..++.++....+|.+...+-
T Consensus 990 L---~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~Cr 1064 (2710)
T PRK14707 990 L---VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVCL 1064 (2710)
T ss_pred H---hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhHH
Confidence 2 111100 001113466677777777665555555555555443 22222221 224555666666665544444
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCc
Q 016114 253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 329 (395)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 329 (395)
.-+..+.........-.....-..++.++....+|.+.-.+-+-++.+....-....+........++.+.....++
T Consensus 1065 ~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707 1065 AAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred HHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence 44444333331111101111223566677777777776666666666666654333333322333444444444443
No 290
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.32 E-value=0.76 Score=41.25 Aligned_cols=115 Identities=18% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHHHcCChHHHHHHH------HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 108 GSLFIKEGKAVDAESVF------SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 108 ~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
+.++...|+.++|+... +-++++.+++ +......+..++..+.....+.-|.+.|.+.-+.
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 45566667777766543 3344444332 1222233444555555555555555555543221
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
..+...+...+++.+|..+.++--+ ....++...|..+....+|++|.+.|.+|
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe-----------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPE-----------FKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCcc-----------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 2234455666777777665443111 12234455566666666777776666554
No 291
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.30 E-value=0.019 Score=30.03 Aligned_cols=36 Identities=19% Similarity=-0.065 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
.++..||.+-...++|++|..-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999999887643
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.22 E-value=0.008 Score=30.40 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVL 47 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 47 (395)
.+++.+|.++...|++++|+..|++.++..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 367899999999999999999999988753
No 293
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.78 Score=40.19 Aligned_cols=252 Identities=14% Similarity=0.055 Sum_probs=141.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHH
Q 016114 107 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 186 (395)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 186 (395)
....+...+..+. +...+++...+... |..+.....-+.++...|+.+.|+..++.+++..- ....
T Consensus 237 ~~~~~~~~p~~d~--~~~~~~Ll~~~~~~----p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~--------kQ~~ 302 (546)
T KOG3783|consen 237 FISFVLGTPNPDG--EECEKALKKYRKRY----PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM--------KQVK 302 (546)
T ss_pred HHHHHcCCCCccH--HHHHHHhHHHHHhC----CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH--------HHHH
Confidence 3344445555554 44445554444443 33334455667788888888888888888776211 1233
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHH
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAERLLRICLDI 258 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~ 258 (395)
.-++..+|.++..+.+|..|-..+....+.. +...+..-+..|.++.. .|+-++|..+++.....
T Consensus 303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l 375 (546)
T KOG3783|consen 303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEEL 375 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHH
Confidence 4556788888988999999988887766542 22222222222333322 33555555555544443
Q ss_pred HHHhhCCCCcch--------------------HH--HHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 016114 259 MTKTVGPDDQSI--------------------SF--PMLHLGITLYHL--NRDKEAEKLVLEALYIREIAFGKDSLPVGE 314 (395)
Q Consensus 259 ~~~~~~~~~~~~--------------------~~--~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 314 (395)
.... +.+.|.. .. -+..++.++..- ...++.. ++........-.+..+..-
T Consensus 376 ~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~l 450 (546)
T KOG3783|consen 376 LANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGL 450 (546)
T ss_pred HHhc-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHH
Confidence 3321 1111111 00 122333222221 1112222 1111111111112233344
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc-hhhhchhhHHHHHHH
Q 016114 315 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR-KEEKFPLKKRLSNLR 386 (395)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 386 (395)
-+..+|.++..+|+.. .|..+|..+++-... ...++.-.+.+++.+|.+|..+|. ..++..++.+|.+..
T Consensus 451 k~lL~g~~lR~Lg~~~-~a~~~f~i~~~~e~~-~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSE-VAPKCFKIQVEKESK-RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 4567899999999888 999999988865222 234455667899999999999999 999999999997755
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.07 E-value=0.62 Score=39.67 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=104.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc---------------------ChHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---------------------TSILLVTSLLGMAKVL 69 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~~~~~~~~~l~~~~ 69 (395)
..+|....++..++.++..+|+++.|.++.++|+-.++....+ .+.....+++......
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 5567788889999999999999999999999999776643211 1224455677777888
Q ss_pred HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114 70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 149 (395)
Q Consensus 70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 149 (395)
.+.|-+..|.++.+-.+.+ .+. .+-..+...+-....+.++++--++.++.......+. .........+..
T Consensus 114 ~~RG~~rTAlE~~KlLlsL-----dp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSL-----DPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred HhcCcHHHHHHHHHHHHhc-----CCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 8999999999999888876 222 0223345555556667788876666666544421110 000111334556
Q ss_pred HHHHHHCCCH---------------HHHHHHHHHHHHHH
Q 016114 150 AHAKCANGNA---------------EEAVELYKKALRVI 173 (395)
Q Consensus 150 a~~~~~~g~~---------------~~A~~~~~~a~~~~ 173 (395)
+.++...++- ++|...+.+|+...
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 6677777777 88999999998865
No 295
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.6 Score=37.59 Aligned_cols=127 Identities=19% Similarity=0.094 Sum_probs=80.5
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114 105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184 (395)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 184 (395)
..-+.-....|++.+|...+..++.. .+....+...++.+|...|+.+.|...+...=.-.+ +..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~ 202 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA 202 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH
Confidence 34455677889999999999999987 333456778899999999999999988876322111 011
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.. ........+.......+....-.++ . .+|+.......+|..+...|+.++|.+.+-..+.
T Consensus 203 ~~--~l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 203 AH--GLQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HH--HHHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 10 0111112222222222222221111 1 3566667788999999999999999988766554
No 296
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.03 E-value=0.76 Score=38.59 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=92.0
Q ss_pred CChhHHHHHHHHHHHHHhhhc------------HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHH
Q 016114 224 EHPSFVTHLLNLAASYSRSKN------------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 291 (395)
Q Consensus 224 ~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 291 (395)
.+|....++..+...--..-. .+.-+.++++|++ . +|.....+..+-.+.....+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~-------~-np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK-------H-NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH-------h-CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 456666666666554333221 2344455555555 2 4555555555555666667777777
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCC----------CHHHHHHHHH
Q 016114 292 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE----------SEEVMLTLKK 361 (395)
Q Consensus 292 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~ 361 (395)
+-+++++... ++.+.....+...-......-.+. .....|.+++.......... ......+...
T Consensus 86 ~~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~-~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 86 KKWEELLFKN-----PGSPELWREYLDFRQSNFASFTVS-DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 7777777642 444444333333332223333466 78888999887766554332 2345667778
Q ss_pred HHHHHHHhcchhhhchhhHHHHHHH
Q 016114 362 VVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 362 la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
+...+...|-.+.|...++-.+++.
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888999999999999999988764
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.01 E-value=0.46 Score=35.96 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=63.7
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
+..+..+..+|.... .++.+-.-++|...|-++ -+....+.+.....||..|.+. +.+ +++.++
T Consensus 100 L~~~tk~S~dP~llY-------y~Wsr~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~kr-D~~-Kt~~ll 163 (203)
T PF11207_consen 100 LQEETKNSQDPYLLY-------YHWSRFGDQEALRRFLQL-------EGTPELETAELQYALATYYTKR-DPE-KTIQLL 163 (203)
T ss_pred HHHHHccCCCccHHH-------HHhhccCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHHcc-CHH-HHHHHH
Confidence 334444456665432 233343335555555433 2344445567788899888754 566 999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc
Q 016114 338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF 376 (395)
Q Consensus 338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 376 (395)
-+++++... ++.-.++++..|+.++..+|+++.|-
T Consensus 164 ~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 164 LRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 999998654 22233577888999999999999874
No 298
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.01 E-value=0.025 Score=48.08 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=80.5
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
.-+...+..+.|+.|+..|.+++++ +|..+..+.+.+..+.+.+++..|+.-+.++++. +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3456677889999999999999987 6777777788889999999999999999999986 58888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.+|...|..+...+++.+|...|+....+
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 88999999999999999999999887764
No 299
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.96 E-value=0.62 Score=36.97 Aligned_cols=182 Identities=14% Similarity=0.060 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhhCCCCcc
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQS 269 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 269 (395)
..+|.+....|+|++...++++++... ......-.+.++.+|- ..|....+...+........ +..++.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~~ 74 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNEK 74 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchhH
Confidence 568899999999999999999988761 1112223334444442 23444444444433322111 111111
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH-HHHHHHHHc-----CC----chhHHHHHH
Q 016114 270 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD--SLPVGEALD-CLVSIQTRL-----GE----DDTKLLELL 337 (395)
Q Consensus 270 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~-~l~~~~~~~-----~~----~~~~A~~~~ 337 (395)
.. .+..-|.. .=-++=......++.+....+-|. .+.....+. ..|..|.-. |+ ..++|...|
T Consensus 75 ~~----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY 149 (236)
T PF00244_consen 75 QV----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAY 149 (236)
T ss_dssp HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhh
Confidence 11 11111111 111223344555555555433222 222211122 133333211 11 113899999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHH-hcchhhhchhhHHHHHHHH
Q 016114 338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDK-LGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~ 387 (395)
++|+++....+++.+|.......+.+..|+. .|+.++|+.+.+++..-.-
T Consensus 150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999999998899999999888888887754 8999999999888876543
No 300
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.88 Score=38.62 Aligned_cols=195 Identities=17% Similarity=0.122 Sum_probs=133.1
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
+-....+.....+.++....++..|...+.+..-.+.+ +.+......++..++.++.+.+..-.+..+.-.++....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 34455667777899999999999999999988765543 2234456677788888888888888888887777776654
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhH-----HHHHHHHHHHHHhhhcHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-----VTHLLNLAASYSRSKNFVEAER 250 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~ 250 (395)
- . .+...+..-.+++......|-.++|...+..++....-..|-+.... +.++..-+.. ....+.+.+.+
T Consensus 346 y---~-ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s-~~~e~ld~~~~ 420 (482)
T KOG4322|consen 346 Y---S-LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALS-CANESLDGFPR 420 (482)
T ss_pred h---c-cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhh-hhhhhHHhhHH
Confidence 2 2 22223344467888899999999999999999887654433221110 1111111111 15567888888
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHH---HHHHHHHHHH
Q 016114 251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE---AEKLVLEALY 299 (395)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~ 299 (395)
+++++-+++.+. ..+..+..+.+.++..|-..|+.++ +...|+++..
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 899888887776 4456677888899999999998654 4445555543
No 301
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.79 E-value=0.78 Score=36.83 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114 158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 237 (395)
Q Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 237 (395)
.-...++.+.+|.+.++.. ........+...+|..|...|++++|.++++.+...+++.. ...-...++..+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~----~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg--W~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY----GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG--WWSLLTEVLWRLLE 226 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHH
Confidence 4456688889999888764 33556666778999999999999999999999977665432 23445566778888
Q ss_pred HHHhhhcHHHHHHHHHH
Q 016114 238 SYSRSKNFVEAERLLRI 254 (395)
Q Consensus 238 ~~~~~~~~~~A~~~~~~ 254 (395)
++...|+.+..+.+.-+
T Consensus 227 Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 99999998887765544
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.78 E-value=0.21 Score=33.52 Aligned_cols=102 Identities=20% Similarity=0.104 Sum_probs=60.6
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc----CChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 65 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 65 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
.+..++..|++-+|+++.+..+..... +......+..-|.++..+ .+.+-=..++.-+++-+.+.. .-.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccCh
Confidence 356788999999999999998776322 222224455556666443 344433444444444443332 1255
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
..+..++.+|.-+.....|+++..-.++++.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66777777777666666666666666666553
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.67 E-value=0.45 Score=34.57 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCC
Q 016114 186 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 265 (395)
Q Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 265 (395)
+...+..+..+-...++.+++..++.-. ... .|.....-..-|.++...|+|.+|+.+++....
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~AL-rvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-------- 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDAL-RVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE-------- 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHH-HHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------
Confidence 3445567777777888999988877643 332 355555666788999999999999999998654
Q ss_pred CCcchHHHHHHHHHHHHhcCChH
Q 016114 266 DDQSISFPMLHLGITLYHLNRDK 288 (395)
Q Consensus 266 ~~~~~~~~~~~la~~~~~~g~~~ 288 (395)
..+....+--.++.|+..+|+.+
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCChH
Confidence 45666666677888998888864
No 304
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.65 E-value=0.024 Score=48.20 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
+-.-+..++.-+.|+.|+..|.+|+++ +|..+..+.+.+..+...+++..|+.-+.++++. +|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~ 70 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPT 70 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cch
Confidence 345667788889999999999999987 3444555666778889999999999999999886 588
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
...+|..-|..+...+++.+|...|+....+
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999999988766
No 305
>PRK14707 hypothetical protein; Provisional
Probab=95.62 E-value=3.4 Score=42.99 Aligned_cols=299 Identities=11% Similarity=0.023 Sum_probs=160.4
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhh--HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 141 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 141 (395)
.+++++...++|.++..+-.-+..+..... ..+..... -..++.++...+++.+...+-.-+..+...+. +++.
T Consensus 836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa--~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~ 911 (2710)
T PRK14707 836 HVATVLNAMSKWPDNAVCAAAAGAMAERLA--DEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPE 911 (2710)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHh--cChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHH
Confidence 466777777888877777766666665543 23333222 33467778888888888888777777777664 3343
Q ss_pred HHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 142 VGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM--RIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 142 ~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
... .-..+++++-...+|.++-.+-.-+..+.... ..+ +.+... -..++.++...+++-+...+-.-+..+.
T Consensus 912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rL---a~d-~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA 987 (2710)
T PRK14707 912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERL---SDD-PDLREALDASNLPQVLNALSKWPDVPAGGEVVDALA 987 (2710)
T ss_pred HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHh---ccC-hhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 333 23466777777777776555544444444432 111 111111 1346777777788777666555555554
Q ss_pred HhhhCCCChhHHHH--HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH--HHHHHHHHHHhcCChHHHHHH
Q 016114 218 EKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF--PMLHLGITLYHLNRDKEAEKL 293 (395)
Q Consensus 218 ~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~ 293 (395)
.... +++..... -..++.++....+|.++-.+-.-+..+...+. ..+.... .-..++.++...++|.+.-.+
T Consensus 988 ~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~C 1063 (2710)
T PRK14707 988 ERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVC 1063 (2710)
T ss_pred HHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhH
Confidence 4432 11221111 22455666666677665555555555555442 2222222 123567777777777765555
Q ss_pred HHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Q 016114 294 VLEALYIREIAFGKDSLPV--GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 371 (395)
Q Consensus 294 ~~~al~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 371 (395)
-.-+..+..... +++.. ...-..++.++....++. +.-.+-+-++.+...+-...++........++.++-...+
T Consensus 1064 r~Aa~aLA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKWP-~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSK 1140 (2710)
T PRK14707 1064 LAAASALAERLS--DDLVLRNALDSQGFGNALNALSKWP-DSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSK 1140 (2710)
T ss_pred HHHHHHHHHHhh--ccHHHHHhhchHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhc
Confidence 544444444332 22221 122234566666666665 4445555566666555444444333334455555555555
Q ss_pred hhhhch
Q 016114 372 KEEKFP 377 (395)
Q Consensus 372 ~~~A~~ 377 (395)
|.....
T Consensus 1141 Wp~~~~ 1146 (2710)
T PRK14707 1141 WPGTQA 1146 (2710)
T ss_pred CCCchH
Confidence 554333
No 306
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.58 E-value=0.0065 Score=49.08 Aligned_cols=91 Identities=21% Similarity=0.143 Sum_probs=79.0
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 145 (395)
+.-.+..|.+++|++.|..++.+ .|..+..+...+.++..+++...|+.-+..++.+ +++.+.-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG 184 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence 45556788999999999999876 6777888999999999999999999999999987 5666677
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
+-..+.....+|++++|...+..+.++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 777888899999999999999998875
No 307
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.45 E-value=1.4 Score=37.53 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=100.7
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-------------------ccCCCCchHHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLHI 199 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~ 199 (395)
+|.-..++..++.++..+|++..|.+++++|+-.++.. .+..+.+.....+.......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 56677889999999999999999999999998766532 01112233444556677788889
Q ss_pred cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 016114 200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 279 (395)
Q Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 279 (395)
.|-+..|.++.+-.+.+- ...+|. .++..+=....+.++++--++.++.......+..-..-| ...+..+.
T Consensus 116 RG~~rTAlE~~KlLlsLd----p~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP---n~a~S~aL 186 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLD----PDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP---NFAFSIAL 186 (360)
T ss_pred cCcHHHHHHHHHHHHhcC----CCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc---cHHHHHHH
Confidence 999999999998877752 111333 233344444556677766666665543310000000122 23456677
Q ss_pred HHHhcCCh---------------HHHHHHHHHHHHHH
Q 016114 280 TLYHLNRD---------------KEAEKLVLEALYIR 301 (395)
Q Consensus 280 ~~~~~g~~---------------~~A~~~~~~al~~~ 301 (395)
++...++- ++|...+.+|+..+
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 77777777 89999999998765
No 308
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=1.3 Score=36.16 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q 016114 163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 242 (395)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 242 (395)
++-+++.++-..+. ........++.+.|..|.+.|+-+.|.+.+.+..+-..... ...+...+...+|..|...
T Consensus 84 i~eld~~iedaeen----lGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 84 IKELDEKIEDAEEN----LGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH
Confidence 34444444444432 12344567788999999999999999999998776544332 3345666777888888765
Q ss_pred hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114 243 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 243 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 302 (395)
.-..+.++ ++-.+.++ |.+....-..-..-|.......++.+|..+|-.++..+.
T Consensus 158 ~lV~~~ie---kak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 158 DLVTESIE---KAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHH---HHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 44443333 33333332 222222222233446666778899999998888776543
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.24 E-value=0.021 Score=32.59 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhhh
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV 393 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 393 (395)
+.++.+|..+.+.|++++|..+.+.++++.|+..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4578899999999999999999999999998877654
No 310
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.14 E-value=1.6 Score=36.20 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=106.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHHHHHHHhcCCCChhhhhh
Q 016114 28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GRAKKAVEIYHRVITILELNRGTESADLVLP 103 (395)
Q Consensus 28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 103 (395)
...+++..+...+..+-.. ..+ .....++.+|... .+..+|..+|+.+.+ ......
T Consensus 52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence 3556777777777776541 111 4556666666543 457778888874433 244567
Q ss_pred HHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH
Q 016114 104 LFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-------NAEEAVELYKKALRV 172 (395)
Q Consensus 104 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~ 172 (395)
.+.+|.+|.. ..+..+|..+|.++... .++.-..+...++.+|..-. +...|...|.++-..
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 7778988877 45899999999999875 22322345677777776642 223677777777654
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 243 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 243 (395)
. ...+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 185 ~------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 G------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred c------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 2 13455778877755 33789999999998764 22 45666777 555555
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.01 E-value=0.81 Score=33.31 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
...+..+..+..+-...++.+++...+.-..-+ .|.....-..-|.++...|++.+|+..++....
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 355666777777888888999998887654443 567777778889999999999999999998643
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHH
Q 016114 136 GENDGRVGMAMCSLAHAKCANGNAE 160 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g~~~ 160 (395)
..+....+-..++.++...|+.+
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 24444445556788888888764
No 312
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.93 E-value=0.017 Score=46.77 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=79.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 100 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (395)
...+.-.+..|.+++|++.|..++.+ .|..+..+...+.++..+++...|+.-+..++.+ +++.
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Ds 181 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDS 181 (377)
T ss_pred HHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cccc
Confidence 44555677889999999999999875 3555667888899999999999999999999887 5677
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
+.-|-..+.....+|++.+|...+..+.++
T Consensus 182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 182 AKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 777777888899999999999999998876
No 313
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.91 E-value=0.1 Score=45.76 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
++..|..|...|+...|+.++..|+..... .....+.+++.+....|-..+|-.++.+++.+. ..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence 344566777899999999999999875322 223346788999999999999999999999884 12
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
.+-..+.+|..+....+.+.|++.|.+|++.
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 2345778899999999999999999999986
No 314
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=1.6 Score=35.00 Aligned_cols=135 Identities=18% Similarity=0.087 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH
Q 016114 157 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 236 (395)
Q Consensus 157 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 236 (395)
..-++-++-+.+.++-.+.. ........++.++|..|...++.+.+.+++.+.+.-..... -..+...+...+|
T Consensus 89 kkneeki~Elde~i~~~eed----ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg 162 (412)
T COG5187 89 KKNEEKIEELDERIREKEED----NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLG 162 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHH
Confidence 33455566666666554432 12344567889999999999999999999998877554332 3345556667888
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114 237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 237 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 302 (395)
.+|..+.-.++.++.....++ + |.+....-..-...|.......++.+|..++-..+..+.
T Consensus 163 ~~y~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 163 LIYGDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HhhccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 888777666666555554444 2 222222222233446666777888888888877766543
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.83 E-value=0.048 Score=26.90 Aligned_cols=29 Identities=21% Similarity=0.629 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINV 46 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 46 (395)
.++..+|.++...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45788999999999999999999998865
No 316
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=2.4 Score=36.18 Aligned_cols=196 Identities=14% Similarity=0.070 Sum_probs=132.7
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
+-....+.....+.++....++..|...+.+..-.+.+ +........+...++.++.+.+..-.+..+.-.++...
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k----~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK----GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 33444566777899999999999999999988765543 34455667777888888888888778887777776665
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-----hHHHHHHHHHHHHhcCChHHHHH
Q 016114 218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-----ISFPMLHLGITLYHLNRDKEAEK 292 (395)
Q Consensus 218 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 292 (395)
.+.. .+......-..++..+...|-.+.|...+..++....-..|-++.. .+.++..-+..+ ...+.+.+..
T Consensus 344 sey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~ 420 (482)
T KOG4322|consen 344 SEYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR 420 (482)
T ss_pred HHhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence 5432 2222334455788888899999999999999988655443322111 111111112222 4567788888
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh--HHHHHHHHHHH
Q 016114 293 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT--KLLELLKRVLR 342 (395)
Q Consensus 293 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~A~~~~~~al~ 342 (395)
+++++-++..+. .-+..+.++.+.++..|-..|+.++ ++...|+++..
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 888888887765 4566677888899999999998751 44455555543
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.71 E-value=0.018 Score=28.60 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
.++..+|.++...|++++|...+++++.+.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3577899999999999999999999987654
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.53 E-value=1.6 Score=33.23 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Q 016114 117 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 196 (395)
Q Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~ 196 (395)
-++|...|.++- +......+.....+|..|. ..+.++|+.++-+++++... +...-..++..|+.+
T Consensus 122 d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~------~~~~n~eil~sLas~ 187 (203)
T PF11207_consen 122 DQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP------DDNFNPEILKSLASI 187 (203)
T ss_pred cHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHH
Confidence 355666555442 3334456777888887776 67899999999999998643 222224556889999
Q ss_pred HHHcCChHHHH
Q 016114 197 LHIVGRGQEGR 207 (395)
Q Consensus 197 ~~~~g~~~~A~ 207 (395)
+...|+++.|-
T Consensus 188 ~~~~~~~e~AY 198 (203)
T PF11207_consen 188 YQKLKNYEQAY 198 (203)
T ss_pred HHHhcchhhhh
Confidence 99999999875
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.46 E-value=0.034 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcchhhhchhhHH
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKKR 381 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~~ 381 (395)
.+...+|.++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567899999999999999988763
No 320
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.46 E-value=2.1 Score=34.40 Aligned_cols=186 Identities=12% Similarity=0.025 Sum_probs=110.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc---Ch-------HHHHHHHHHHHHHHHhhC--------------chh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---TS-------ILLVTSLLGMAKVLGSIG--------------RAK 76 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-------~~~~~~~~~l~~~~~~~g--------------~~~ 76 (395)
+.+..+++..|+..+|+.-+++=+....+..++ .. ...+.-+..+|....... -|.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 567789999999999999999988888776544 11 112222333444433222 122
Q ss_pred HHHHHHHHHHHHHHHhcC-CC-Ch-h-----------------hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 77 KAVEIYHRVITILELNRG-TE-SA-D-----------------LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 77 ~A~~~~~~al~~~~~~~~-~~-~~-~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
.|-.+...-...++.... |+ .+ . ....+......-.....-...++++.+|+..+.+..
T Consensus 94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~- 172 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG- 172 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc-
Confidence 232222222222333210 01 00 0 000000000001112234456788888888877642
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
...........+|..|...|++++|..+++.+...+++ ..-......++..+..++...|+.+..+.+.-+
T Consensus 173 -~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~----egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 173 -QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR----EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred -cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh----CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 23445556778999999999999999999999887765 244556677778899999999998877665433
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.45 E-value=0.067 Score=25.26 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~ 295 (395)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998875
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.45 E-value=0.49 Score=27.08 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
.+++.+|..+.+.|++++|..+.+.++++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 356889999999999999999999999865
No 323
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.35 E-value=0.16 Score=35.35 Aligned_cols=75 Identities=12% Similarity=0.001 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114 313 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
..+.++++.++.+..+.+ ..++.+.+++.++. .......+.++.|+..+.+.++|++++.+....++..++..+
T Consensus 32 ~~s~f~lAwaLV~S~~~~-----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTE-----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHHcccchH-----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 456788888888877654 23444555555443 233345677889999999999999999999998888776655
Q ss_pred h
Q 016114 392 K 392 (395)
Q Consensus 392 ~ 392 (395)
+
T Consensus 107 a 107 (149)
T KOG3364|consen 107 A 107 (149)
T ss_pred H
Confidence 4
No 324
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=1.5 Score=32.25 Aligned_cols=123 Identities=12% Similarity=-0.068 Sum_probs=81.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH--HHH
Q 016114 242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL--DCL 319 (395)
Q Consensus 242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~l 319 (395)
.+..++|+.-|...-+ . .....-..+....+.+....|+...|+..|.++-.- ...|....-+ ..-
T Consensus 71 ~~k~d~Alaaf~~lek----t--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlra 138 (221)
T COG4649 71 ENKTDDALAAFTDLEK----T--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRA 138 (221)
T ss_pred cCCchHHHHHHHHHHh----c--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHH
Confidence 4566677766654432 1 111222345677889999999999999999876442 1223333222 233
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114 320 VSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 384 (395)
Q Consensus 320 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 384 (395)
+.++...|.++ ......+.+-++.+|-...+...||..-.+.|++.+|..+|.+...
T Consensus 139 a~lLvD~gsy~--------dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYD--------DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHH--------HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44555666555 3444444555678888888999999999999999999999998764
No 325
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.94 E-value=4.1 Score=35.77 Aligned_cols=178 Identities=13% Similarity=-0.081 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH-------HHHHHHHHHHHHHHHH
Q 016114 189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF-------VEAERLLRICLDIMTK 261 (395)
Q Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~~ 261 (395)
....+|...+..|+|+-|...|+.+..-+.... .....+.+....|.+....+.. ++...+++.++..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 346799999999999999999998877553211 1223344444555555555532 4777888888887776
Q ss_pred hhC---CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHH--HHcCCchhHH
Q 016114 262 TVG---PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP---VGEALDCLVSIQ--TRLGEDDTKL 333 (395)
Q Consensus 262 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~l~~~~--~~~~~~~~~A 333 (395)
... ........+....+.++...|.+.+|...+-+.....- ..... .+..+..++.++ ....... .-
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~-~~ 362 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPS-PG 362 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCC-cc
Confidence 321 11224556777788888889998888777666655421 01111 334455555555 2221110 00
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 334 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 334 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
..-+ ...+--+..-|.-|...|+...|..+|.+++.+.+.
T Consensus 363 ~~r~---------------RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 363 LTRF---------------RKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred chhh---------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0001 122233344567889999999999999999887653
No 326
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.73 E-value=3.7 Score=34.57 Aligned_cols=148 Identities=13% Similarity=0.069 Sum_probs=89.8
Q ss_pred CChhhhhhHHhHHHHHHHcCC------------hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 016114 96 ESADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 163 (395)
.+|....++..+.......-. .+.-+.++++|++. +|.....+..+-.......+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 355556666655544433322 23344555666554 2333333333334445666777777
Q ss_pred HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC----------ChhHHHHHH
Q 016114 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLL 233 (395)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~ 233 (395)
+-+++++.. .+....+...|...-..-...-.++.....|.+++.......... ......++.
T Consensus 86 ~~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 86 KKWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 777777764 344455444444433333444568899999999988776554322 223456677
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 234 NLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 234 ~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
.+.......|..+.|+..++-.+++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHH
Confidence 7888888999999999999998885
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.65 E-value=1.9 Score=30.97 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114 188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 267 (395)
Q Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 267 (395)
..+..+...-...++.+++..++... ... .|.....-..-|.++...|+|.+|+..++...+ +.
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdAL-rvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------~~ 74 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDAL-RVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLS--------SA 74 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-HHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc--------cC
Confidence 33445555555688888888877643 332 244444555678899999999999999988765 23
Q ss_pred cchHHHHHHHHHHHHhcCChH
Q 016114 268 QSISFPMLHLGITLYHLNRDK 288 (395)
Q Consensus 268 ~~~~~~~~~la~~~~~~g~~~ 288 (395)
+......-.++.|+..+||.+
T Consensus 75 ~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCchHHHHHHHHHHHhcCChH
Confidence 333445566788888888754
No 328
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.60 E-value=0.78 Score=38.64 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh--
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN-- 92 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 92 (395)
.+..++..+|..|...|+++.|+..|.++.+.+.. ....+..+.++-.+-...|+|..-..+..+|.......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 34667889999999999999999999998776543 34677788888888889999998888888877652100
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 128 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (395)
....-+....+.. |.+....++|..|..+|-.+.
T Consensus 223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence 0001122233444 444455568999888886653
No 329
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=5.6 Score=36.08 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
..++.+-+.-.+...+|..++++|...+...... ..+...+.....++.||....+.+.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3445566777788899999999999998765432 223456788899999999999999999999998775
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 132 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 132 (395)
+|...-....+..+....|.-++|+...........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 344444555566667778888899888877766543
No 330
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.50 E-value=4.9 Score=35.27 Aligned_cols=179 Identities=16% Similarity=0.037 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHH
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG-------QEGRELLEECLLI 216 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 216 (395)
.....+|.+++..|+|+-|...|+.+.+-+.. .......+.+....|.+....+.. ++...+++.|+..
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 35678999999999999999999998886643 123344555666666666666643 4777888888887
Q ss_pred HHhhhC---CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc---hHHHHHHHHHHH--HhcCChH
Q 016114 217 TEKYKG---KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS---ISFPMLHLGITL--YHLNRDK 288 (395)
Q Consensus 217 ~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~ 288 (395)
+.+... ........+....+.++...|.+.+|...+-+.....- ..... .+..+..+|.++ .......
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~ 360 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPS 360 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCC
Confidence 766321 11224455667778888888998888777666554311 01111 333444555555 1110000
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 289 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
.-.. .....+.-+..-|.-|.+.|+.. .|..+|.+++.++..
T Consensus 361 ~~~~---------------r~RK~af~~vLAg~~~~~~~~~~-~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 361 PGLT---------------RFRKYAFHMVLAGHRYSKAGQKK-HALRCYKQALQVYEG 402 (414)
T ss_pred ccch---------------hhHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHhCC
Confidence 0000 01122223344577899999999 999999999998864
No 331
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.46 E-value=1.7 Score=29.79 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh---H----HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---I----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+..+|...+..+++-.++-.|++|+.+.++....+. . ..+....++|..+...|+.+-.+++++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 456888999999999999999999999877631111 1 234567899999999999999999998887665443
No 332
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.31 E-value=3.1 Score=35.33 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK- 219 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 219 (395)
.+-.++..+|.-|...|+++.|++.|.++...+.. ...+..++.++-.+-...|+|..-..+..+|......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~ 220 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN 220 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence 35678899999999999999999999998877643 3455677788888888999998888888777664210
Q ss_pred -hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 220 -YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 220 -~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
......+....+...+ +....+++..|..+|-.+
T Consensus 221 ~~~~q~v~~kl~C~agL--a~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 221 ENLAQEVPAKLKCAAGL--ANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhHHHhcCcchHHHHHH--HHHHHHHHHHHHHHHHhC
Confidence 0001122233444444 444556888888877554
No 333
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.29 E-value=3.9 Score=33.49 Aligned_cols=111 Identities=12% Similarity=-0.037 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114 269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 348 (395)
Q Consensus 269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 348 (395)
..+.+...||.+|...++|..|...+.- +.........+.......+..++++|...++.. +|..+..++--.....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~v-eae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKV-EAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHhhhcc-
Confidence 4556778899999999999998776642 222111111122334566788999999999988 8888887775433221
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114 349 GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 383 (395)
Q Consensus 349 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 383 (395)
.+..-.......-|+++-..+++-||...|-+..
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223334445778888888888877666543
No 334
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.19 E-value=0.21 Score=42.57 Aligned_cols=137 Identities=13% Similarity=0.004 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhhC----CC--ChhHHHHHH----HHHHHHHhhhcHHHHHHHHHHH
Q 016114 187 ENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKG----KE--HPSFVTHLL----NLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 187 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~----~~--~~~~~~~~~----~la~~~~~~~~~~~A~~~~~~a 255 (395)
..++..+|..+... .+.-.|..++.++++....... .. .|....-+. +...+-.-.++.++ .--++
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence 33444555555433 3466788888888877554110 01 111111111 11111111222221 22356
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114 256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 326 (395)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (395)
+-+.+.++|+.||++.......|-+|...|+++.-++++.-|+.+.++.+.|-.|.+...+...+.++...
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 67778899999999887777889999999999999999999999999999999999988888888776543
No 335
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.19 E-value=1.9 Score=29.57 Aligned_cols=74 Identities=12% Similarity=-0.006 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHH-------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV-------GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
+..+|......+++-.++-.|++|+.+.++....+..+. ..+..+||..+...|+.+ -.+.+++-|-+.-..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~-yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSD-YELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence 456788889999999999999999999888742222111 334668999999999999 888888877665444
Q ss_pred cc
Q 016114 347 EF 348 (395)
Q Consensus 347 ~~ 348 (395)
+.
T Consensus 83 Li 84 (140)
T PF10952_consen 83 LI 84 (140)
T ss_pred hc
Confidence 43
No 336
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.11 E-value=4.2 Score=33.32 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 306 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 306 (395)
..+.+...||.+|.+.++|..|...+.-.-. -.-....+.......+..+|.+|...++..+|..+..++--.....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~-~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPL-DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccCc-ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence 4566778999999999999999877643211 0000001112334567789999999999999999988874433221
Q ss_pred CCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 307 KDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
.+..-....-..-|++.-..+++-+.|..+|
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1212222233345666666777763444444
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.99 E-value=2.8 Score=30.98 Aligned_cols=149 Identities=17% Similarity=0.116 Sum_probs=95.2
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114 67 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 146 (395)
Q Consensus 67 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 146 (395)
..|+..+.-+.+-..|..++++. ..++.++|+.-|...-+. .-..-| ..+.
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lekt----g~g~Yp--vLA~ 97 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKT----GYGSYP--VLAR 97 (221)
T ss_pred eehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhc----CCCcch--HHHH
Confidence 44566666666666666666653 335566777666654332 111223 2356
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (395)
...+.+....|+-..|+..|.++-.... .|. ...-.+...-+.++...|.|++-....+ ...++.+|
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~-----~P~-~~rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d~n~ 164 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTS-----IPQ-IGRDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGDGNP 164 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCC-----Ccc-hhhHHHHHHHHHHHhccccHHHHHHHhh-------hccCCCCh
Confidence 6778889999999999999988754211 111 1112233445667777888776544332 33455677
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
....+...||..-.+.|++.+|...|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777888899999999999999999987765
No 338
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.89 E-value=1.7 Score=28.31 Aligned_cols=72 Identities=21% Similarity=0.131 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
+|....+.+.+|..+...|++++|++.+-.++... +.. +.+ .|...+-..+++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d--------r~~---------------~~~-~ar~~ll~~f~~--- 70 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD--------RDY---------------EDD-AARKRLLDIFEL--- 70 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---------TTC---------------CCC-HHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------ccc---------------ccc-HHHHHHHHHHHH---
Confidence 56677888999999999999999988887766532 110 122 455444444433
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 016114 347 EFGSESEEVMLTLKKVVSYL 366 (395)
Q Consensus 347 ~~~~~~~~~~~~~~~la~~~ 366 (395)
+|+.+|.+......|+.++
T Consensus 71 -lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 71 -LGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp -H-TT-HHHHHHHHHHHHHH
T ss_pred -cCCCChHHHHHHHHHHHHh
Confidence 3566777777777776654
No 339
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.87 E-value=4.8 Score=33.36 Aligned_cols=167 Identities=15% Similarity=0.056 Sum_probs=108.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCCchHH
Q 016114 111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIM 186 (395)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 186 (395)
....+++..+...+.++-.. ..+ .....++.+|.. ..+..+|..+|+.+.+. ..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------g~--- 108 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------GL--- 108 (292)
T ss_pred ccccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---------cc---
Confidence 34556777787777776542 112 456677777765 34678899988855442 11
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh-------cHHHHHHHHHHH
Q 016114 187 ENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-------NFVEAERLLRIC 255 (395)
Q Consensus 187 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~a 255 (395)
.....++|..|.. ..++.+|..+|+++... .++....+...++..|..-. +...|...|.++
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 2344678888877 44889999999998774 22222344667777776542 233677777776
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Q 016114 256 LDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG 327 (395)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (395)
... ....+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 182 a~~----------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 182 AEL----------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHh----------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 652 144577888888865 34889999999998763 22 44567777 666555
No 340
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.86 E-value=3.6 Score=35.16 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=75.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh------HH----HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS------IL----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
.=|..++.+++|..|..-|..+++++.+...... .+ .......+..||...++.+-|+....+.+.+
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--- 257 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--- 257 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc---
Confidence 3455667888999999999999988866421111 11 1223456889999999999999998888765
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
+|....-+...|.++..+.+|.+|-..+--+.-++
T Consensus 258 -----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 -----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred -----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777788999999999999988776665544
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=8.2 Score=36.27 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 39 VYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 39 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
+|.-|+.+.+.. +.+.......+...|..++..|++++|...|-+++..
T Consensus 349 ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 349 LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 344455555443 3344567788889999999999999999999988765
No 342
>PRK10941 hypothetical protein; Provisional
Probab=92.51 E-value=3.5 Score=33.50 Aligned_cols=79 Identities=14% Similarity=0.019 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
....+.++-.+|...++++.|..+.+..+.+ .|+...-+...|.+|.+.|.+..|..-++..++.. |
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 3456778889999999999999999998874 34444556778999999999999999998888765 5
Q ss_pred CChHHHHHHHHH
Q 016114 308 DSLPVGEALDCL 319 (395)
Q Consensus 308 ~~~~~~~~~~~l 319 (395)
+.|........+
T Consensus 247 ~dp~a~~ik~ql 258 (269)
T PRK10941 247 EDPISEMIRAQI 258 (269)
T ss_pred CchhHHHHHHHH
Confidence 666554433333
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.50 E-value=3.9 Score=39.63 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhhC--CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh
Q 016114 206 GRELLEECLLITEKYKG--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 283 (395)
Q Consensus 206 A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 283 (395)
|.+.|++|+..++++.. +....--.+.+.+|.....+-.-..-.+.|.+|+..+.... +.+...--|..-|.+|.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 564 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAPLEYLGKALVYQR 564 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCchHHHhHHHHHHH
Confidence 44555555554444321 11223345666777776655443333366777777666663 344455556777889999
Q ss_pred cCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 016114 284 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEA 315 (395)
Q Consensus 284 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 315 (395)
.|++++-++++.-|++.+ +.||.....
T Consensus 565 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 591 (932)
T PRK13184 565 LGEYNEEIKSLLLALKRY-----SQHPEISRL 591 (932)
T ss_pred hhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence 999999999999999877 666765443
No 344
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.49 E-value=4.9 Score=32.57 Aligned_cols=207 Identities=15% Similarity=0.073 Sum_probs=102.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHhhhCCCChhH
Q 016114 150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKEHPSF 228 (395)
Q Consensus 150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~ 228 (395)
+..+.+.|++..|.+...-.++.+.+. ..+.+. ....+++.+....+.-+ +-..+.++++... + .+......
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~--~~~~~~---~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gd 89 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKS--EDPVDE---ESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGD 89 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHT--T---SH---HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCC
Confidence 344455555666666555555555542 111111 11244555555554332 3456667777766 2 23333445
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHH--------HHHHhhCCCCcchHHHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRICLD--------IMTKTVGPDDQSISFPM-LHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
...+..+|..+.+.|++.+|..+|-.+-+ +.........+.....+ .....-|...++...|...+..-.+
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66788899999999999999988732211 11111111112222222 3333456778999999988887776
Q ss_pred HHHHH----------cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 016114 300 IREIA----------FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL 369 (395)
Q Consensus 300 ~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 369 (395)
...+. ..+..|.. .-...|-.+ ...+ +...|....+.++..+. .+|.....+..+|..|+..
T Consensus 170 ~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t-~e~~-----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 170 KLIESHPKLENSDIEYPPSYPLL-NFLQLLLLT-CERD-----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHH---EEEEEEEEESS-HHH-HHHHHHHHH-HHHT------HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH--
T ss_pred HHhccCcchhccccCCCCCCchH-HHHHHHHHH-HhcC-----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCC
Confidence 53332 11222321 111122222 2222 33567666666655443 3467788889999999875
Q ss_pred cc
Q 016114 370 GR 371 (395)
Q Consensus 370 g~ 371 (395)
..
T Consensus 242 ~~ 243 (260)
T PF04190_consen 242 QP 243 (260)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 345
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.44 E-value=7.5 Score=34.56 Aligned_cols=212 Identities=19% Similarity=0.208 Sum_probs=116.0
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhcccCC
Q 016114 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIKDSNYMS 180 (395)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~ 180 (395)
+...+.++...|+...|...-.++..++++............+..++..-...- .++.....+++++.+...
T Consensus 289 l~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~----- 363 (656)
T KOG1914|consen 289 LIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI----- 363 (656)
T ss_pred HHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc-----
Confidence 344566777777766665555555555544321111222223333333222222 255566667776665322
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 260 (395)
+... ++.++-..-.+..-...|...|.+|-+.-. .+..+.+...+-. |...++..-|...|+-.+..+
T Consensus 364 -~~tL---v~~~~mn~irR~eGlkaaR~iF~kaR~~~r------~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf- 431 (656)
T KOG1914|consen 364 -DLTL---VYCQYMNFIRRAEGLKAARKIFKKAREDKR------TRHHVFVAAALME-YYCSKDKETAFRIFELGLKKF- 431 (656)
T ss_pred -CCce---ehhHHHHHHHHhhhHHHHHHHHHHHhhccC------CcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhc-
Confidence 2222 223344444455556778888887765321 1111222222222 456789999999999887732
Q ss_pred HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 340 (395)
Q Consensus 261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 340 (395)
++.|... ......+...|+-..|..+|++++... -........|..+-..-...|+.. ..+++-++-
T Consensus 432 ----~d~p~yv---~~YldfL~~lNdd~N~R~LFEr~l~s~-----l~~~ks~~Iw~r~l~yES~vGdL~-si~~lekR~ 498 (656)
T KOG1914|consen 432 ----GDSPEYV---LKYLDFLSHLNDDNNARALFERVLTSV-----LSADKSKEIWDRMLEYESNVGDLN-SILKLEKRR 498 (656)
T ss_pred ----CCChHHH---HHHHHHHHHhCcchhHHHHHHHHHhcc-----CChhhhHHHHHHHHHHHHhcccHH-HHHHHHHHH
Confidence 3344433 334556778899999999999998751 111233455666666667777776 565555555
Q ss_pred HHHHH
Q 016114 341 LRIQE 345 (395)
Q Consensus 341 l~~~~ 345 (395)
...++
T Consensus 499 ~~af~ 503 (656)
T KOG1914|consen 499 FTAFP 503 (656)
T ss_pred HHhcc
Confidence 54444
No 346
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.43 E-value=0.31 Score=41.59 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
++..+.+++.-.|+|..|++.++..---.+.......+-...+++.+|.+|..+++|.+|+..|...+-...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999887653211111222334556678999999999999999999999998876544
No 347
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.33 E-value=5.2 Score=32.52 Aligned_cols=77 Identities=17% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
...++..++..+...|+++.+.+.+++.+. .+|..-..+..+-..|...|+...|+..|++.-....+-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 456788899999999999999999998877 467777888999999999999999999999998876666666
Q ss_pred CChHH
Q 016114 308 DSLPV 312 (395)
Q Consensus 308 ~~~~~ 312 (395)
+....
T Consensus 224 ~P~~~ 228 (280)
T COG3629 224 DPAPE 228 (280)
T ss_pred CccHH
Confidence 55443
No 348
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.20 E-value=2.2 Score=27.84 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
+|....+.+.+|..+...|++++|++.+-.++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566678899999999999999999998887765
No 349
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.04 E-value=0.13 Score=43.84 Aligned_cols=138 Identities=18% Similarity=0.227 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhc--ccC--CCCchHHHHHHH----HHHHHHHHcCChHHHHHHHHHH
Q 016114 143 GMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDS--NYM--SLDDSIMENMRI----DLAELLHIVGRGQEGRELLEEC 213 (395)
Q Consensus 143 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~--~~~--~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~a 213 (395)
..++-.+|..|... .+.-.|..++.++++..... ... .+..+....-+. +....-.-.++.++ +--++
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence 44555566655433 35667888888888765431 001 111121111110 11111111222221 22356
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh
Q 016114 214 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 283 (395)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 283 (395)
+-+.+++.|+.+++........|-+|..+|+++..++++.-|+++.++.+.+-+|.+...+...++++..
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 7777888999999987777778899999999999999999999999999999999999988888887654
No 350
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.88 E-value=2.8 Score=28.36 Aligned_cols=101 Identities=12% Similarity=0.018 Sum_probs=58.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc----CCchhHHHHHHHHHHHHHHhccCCCC
Q 016114 277 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----GEDDTKLLELLKRVLRIQEREFGSES 352 (395)
Q Consensus 277 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~ 352 (395)
.+.-++..|++-+|+++.++.+.... ++......+..-|.++..+ .+++ -=..++.-+++-+.+... -.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d-~k~~yLl~sve~~s~a~~-Ls 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPD-VKFRYLLGSVECFSRAVE-LS 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCch-HHHHHHHHhHHHHHHHhc-cC
Confidence 35678899999999999999887652 2222223444455555433 3444 334455555555554332 24
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114 353 EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 384 (395)
Q Consensus 353 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 384 (395)
|..+..++.+|.-+....-|+++..-.++++.
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55566666666665555555555555555443
No 351
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.82 E-value=9 Score=34.11 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 87 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 87 (395)
+++|....+|+.|-.-+..+ -+++....|++.+..+ |....++...........+|+.-+.+|.+++.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--------PSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45677778888888888777 8999999999887753 33334455556666778889999999988875
No 352
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.80 E-value=5 Score=34.32 Aligned_cols=107 Identities=14% Similarity=0.003 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC---h---h----HHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH---P---S----FVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~---~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
..+-..-|...+++++|..|..-|..+++++.+...... + + ...+-..|..||...++.+-|+....+++
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 333345577788889999999999999988765421111 1 1 12234578899999999999999888877
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
. -+|....-+...|.++..+.+|.+|...+--+.-++
T Consensus 256 ~--------lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 256 N--------LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred h--------cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 356666677778889999999999887766555444
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.52 E-value=3.9 Score=29.39 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 137 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 137 (395)
....+..+...-...++.+++...+...--+ .|.....-..-|.++...|++.+|+..++...+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 3444555555555688888888777654333 5666677777899999999999999999887542
Q ss_pred CChhHHHHHHHHHHHHHHCCCHH
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAE 160 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~ 160 (395)
.+........++.++..+|+.+
T Consensus 74 -~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 -AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -CCCchHHHHHHHHHHHhcCChH
Confidence 2222334445677777777753
No 354
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.37 E-value=6.2 Score=31.41 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
+..++.+....|+|++...+.++++.. +......=.+.++.+|-. .|....+...+.......+ +..++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence 456788999999999999999998876 122222223334444421 2223333333332222111 11112
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL-DDSIMENMRIDLAELLHIV-----G-----RGQEGREL 209 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 209 (395)
...... .-|. ..=-++=...+..++.+......+.. +.......+-..|..|... | -.++|...
T Consensus 74 ~~~~~i----~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 74 KQVKLI----KDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 111111 1110 00012334455556665554311111 2222223333345554432 1 13689999
Q ss_pred HHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHh
Q 016114 210 LEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKT 262 (395)
Q Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~ 262 (395)
|++|+.+.....++.+|.......+.+..|. -.|+.++|..+.+++++-....
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999888899988887778877764 5899999999999988755443
No 355
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.31 E-value=2.3 Score=26.40 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchH
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 185 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (395)
+..+...|.-+-..|++.+|+.+|+++++.+.+.....||.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 3445566777888999999999999999988765334444443
No 356
>PRK10941 hypothetical protein; Provisional
Probab=91.09 E-value=7 Score=31.80 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
-....+.++-.++...++++.|+.+.+..+.+ .|+.+.-+...|.+|.+.|.+..|..-++.-++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 45667788889999999999999999999987 34445556778999999999999999999888774
Q ss_pred CCChhHHHH
Q 016114 137 ENDGRVGMA 145 (395)
Q Consensus 137 ~~~~~~~~~ 145 (395)
++.|.....
T Consensus 246 P~dp~a~~i 254 (269)
T PRK10941 246 PEDPISEMI 254 (269)
T ss_pred CCchhHHHH
Confidence 445554333
No 357
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=90.85 E-value=21 Score=36.52 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC-------------------
Q 016114 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------------------- 202 (395)
Q Consensus 142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 202 (395)
.++....+|..+...|++.+|+..|.+|+...+.. .|.-+.+.++-.++.+..-.+-
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~----~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS----NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc----CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 45567789999999999999999999999998864 5665556555555443322110
Q ss_pred -------------------------------------hHHHHHHHHHHHHHHHhhh---CCCChh--HHHHHHHHHHHHH
Q 016114 203 -------------------------------------GQEGRELLEECLLITEKYK---GKEHPS--FVTHLLNLAASYS 240 (395)
Q Consensus 203 -------------------------------------~~~A~~~~~~al~~~~~~~---~~~~~~--~~~~~~~la~~~~ 240 (395)
.+.-...+++++..+.+.. .+..|. ...+...++.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 1111224455555554442 111222 3455666777777
Q ss_pred hhh--------------------cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 241 RSK--------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 241 ~~~--------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
... .-.++...+.+++...... -...+....+..+|.+|...|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 776 6777888888887754332 123456778899999999999999988888888776
Q ss_pred HHH
Q 016114 301 REI 303 (395)
Q Consensus 301 ~~~ 303 (395)
...
T Consensus 475 ~~~ 477 (1185)
T PF08626_consen 475 LVP 477 (1185)
T ss_pred hcc
Confidence 643
No 358
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.81 E-value=0.85 Score=39.09 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114 190 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 262 (395)
Q Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 262 (395)
...|.+++...|+|..|++.++..---.........+-...+++.+|-+|+..++|.+|++.|...+-...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999876431111112222234456778899999999999999999999998765544
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.56 E-value=27 Score=37.43 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=75.3
Q ss_pred CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
......+|...|++....|+++.|...+-.|.+.. ...+....|..+...|+.. .|+..+++.++....
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~-~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDEL-NALSVLQEILSKNFP 1734 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHH-HHHHHHHHHHHhhcc
Confidence 45678899999999999999999998887776532 2346778899999999999 999999999966543
Q ss_pred c-cCCC--CHH------HHHHHHHHHHHHHHhcchh--hhchhhHHHHHHHH
Q 016114 347 E-FGSE--SEE------VMLTLKKVVSYLDKLGRKE--EKFPLKKRLSNLRM 387 (395)
Q Consensus 347 ~-~~~~--~~~------~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~ 387 (395)
- .++. .|. ...+...++......|+++ +-+.+|..+.++.+
T Consensus 1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 2 1110 111 1234445555566666632 23455666666655
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.32 E-value=9.5 Score=33.75 Aligned_cols=83 Identities=20% Similarity=0.126 Sum_probs=51.5
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
....|..||.....+|+++-|+.+|+++-+ +..|..+|...|+-+.=.+..+.+...
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~kl~~~a~~~------- 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLSKLAKIAEER------- 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHHHHHHHHHHT-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence 445789999999999999999999998643 234566777788865444443333221
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 213 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (395)
.+. +..-.++...|+.++.++.+.++
T Consensus 403 -~~~-------n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 -GDI-------NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -T-H-------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -cCH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 110 11223455668888777777654
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.28 E-value=1.8 Score=23.64 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
..+|..|...|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 362
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.19 E-value=9 Score=31.24 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
....++..++..+...|+++.++..+++.+.. +|..-..+..+-..|...|+...|+..|.+.-.....-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 45678888999999999999999999988875 5666677888899999999999999999998886555444
Q ss_pred CCCh
Q 016114 137 ENDG 140 (395)
Q Consensus 137 ~~~~ 140 (395)
.++.
T Consensus 223 i~P~ 226 (280)
T COG3629 223 IDPA 226 (280)
T ss_pred CCcc
Confidence 4433
No 363
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.11 E-value=1.3 Score=35.91 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
...+.-....|+.++|..+|+.|+.+ .|....++..+|......++.-+|-.+|-+|+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34455567889999999999999987 5677788999999999999999999999999876
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.01 E-value=1.7 Score=23.72 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVIN 45 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~ 45 (395)
+.++..|...|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 365
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.83 E-value=16 Score=33.47 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=78.1
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 180 (395)
...+++-|.-.++..+|..+.++|...+.....- ..+...+....+++.+|..+.+.+.|.+++++|-+.-
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------- 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 3456677888889999999999999998765331 2234467788999999999999999999999998742
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
+..+. ....+..+....|.-++|+...........
T Consensus 425 ~~~~l---~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 425 RQSPL---CQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred cccHH---HHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 22222 223445566677888999988877666543
No 366
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=9.7 Score=30.88 Aligned_cols=131 Identities=16% Similarity=0.064 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc
Q 016114 35 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 114 (395)
Q Consensus 35 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (395)
+-+.-+.+.++-.+... ......+++.++|..|.+.++.+.+.+...+.++-.-... -..+..-+...+|.+|..+
T Consensus 93 eki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 93 EKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhccH
Confidence 33444544444443322 2346788999999999999999999999998877544322 2334445566677777655
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
.-.++.++.....+ ++ |.+....-..-...|.......++.+|-..+...+..+.
T Consensus 169 ~vV~e~lE~~~~~i---Ek--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 169 KVVEESLEVADDII---EK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHH---Hh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 44444444433333 33 233222222233345556667788888888877776543
No 367
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.66 E-value=0.47 Score=38.28 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=50.9
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 319 LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 319 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
.+.-..+.|+.+ +|..+|+.|+.+ .+.+ ..++..+|......++.-+|-.+|-+|+.+.+.+.+.
T Consensus 122 ~A~~~~~~Gk~e-kA~~lfeHAlal-----aP~~---p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 122 AAGRSRKDGKLE-KAMTLFEHALAL-----APTN---PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHhccchH-HHHHHHHHHHhc-----CCCC---HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 344456678888 999999999986 3444 4667888998888899999999999999887766554
No 368
>PF12854 PPR_1: PPR repeat
Probab=89.62 E-value=0.93 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~ 254 (395)
..+++.+...+.+.|+.++|.+++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45788899999999999999999875
No 369
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.38 E-value=2.1 Score=35.56 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHH
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 80 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 80 (395)
...-+...|+-.+.++++++|...|..|..++...+|..+.....+++..|..++..++.....-
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456789999999999999999999999999999999999999999999999999888776653
No 370
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.30 E-value=14 Score=32.21 Aligned_cols=71 Identities=17% Similarity=0.050 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH----------HHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----------LLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 85 (395)
.+....-.|...+..+.+.+|++.+..--...... .++ .....-...+.++...|++.++...+++.
T Consensus 78 s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 78 SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 33444556778889999999998776544332111 111 11112234578889999999999999987
Q ss_pred HHHH
Q 016114 86 ITIL 89 (395)
Q Consensus 86 l~~~ 89 (395)
....
T Consensus 155 ~~~l 158 (549)
T PF07079_consen 155 IERL 158 (549)
T ss_pred HHHH
Confidence 7654
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.17 E-value=6.1 Score=27.88 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 228 FVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
...+.++++.++....+ ..+.+.+++..+. ..+| ....+.+.|+..+.+.++|+.++.+.+..++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 44567788888876654 4556666665543 2233 445677889999999999999999998887753
No 372
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=88.99 E-value=12 Score=30.98 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHC
Q 016114 77 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN 156 (395)
Q Consensus 77 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 156 (395)
+-++-+.+.++-.++..| ......++.+.|..|.+.|+-+.|.+.+.+..+-.-.. ....++......+|..|...
T Consensus 82 eki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccH
Confidence 334445555555544332 34667889999999999999999999998876643332 12334555566677776554
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 157 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 157 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
.-.. +..+++-.+.++ +.|.....+.-..-|.......++.+|-.+|-.++..+.
T Consensus 158 ~lV~---~~iekak~liE~----GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 158 DLVT---ESIEKAKSLIEE----GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHH---HHHHHHHHHHHh----CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 3333 333444444432 444444444445567777778889999998888776543
No 373
>PF12854 PPR_1: PPR repeat
Probab=88.91 E-value=1.4 Score=22.31 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKA 169 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a 169 (395)
..+++.+-..|.+.|+.++|.+++++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 357888999999999999999998763
No 374
>PF13041 PPR_2: PPR repeat family
Probab=88.90 E-value=2.7 Score=23.51 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 230 THLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.+++.+-..+.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678888999999999999999998876
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.87 E-value=8.3 Score=31.33 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
..+...+..|...|.+.+|+.+.++++.+ +|..-..+..+-.++...|+--.+.+.|++.-+..+..+|-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34455677888999999999999999886 5666677778888899999999999999988877776665443
Q ss_pred h
Q 016114 140 G 140 (395)
Q Consensus 140 ~ 140 (395)
.
T Consensus 352 d 352 (361)
T COG3947 352 D 352 (361)
T ss_pred c
Confidence 3
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.69 E-value=17 Score=32.29 Aligned_cols=100 Identities=19% Similarity=0.101 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 225 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (395)
...++..+...|.++.|+.+.+.- .. .+. +....|+++.|.+..++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~--------------~~----rFe---LAl~lg~L~~A~~~a~~------------- 343 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP--------------DH----RFE---LALQLGNLDIALEIAKE------------- 343 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H--------------HH----HHH---HHHHCT-HHHHHHHCCC-------------
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh--------------HH----HhH---HHHhcCCHHHHHHHHHh-------------
Confidence 455667777888887777654321 11 122 33467887777665432
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 295 (395)
......|..||...+.+|+++-|+++|+++-+ +..|..+|...|+.+.=.++.+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHHHHHH
Confidence 11234688889999999999999888887543 2455667777777654444333
No 377
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.88 E-value=11 Score=30.78 Aligned_cols=73 Identities=22% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114 231 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 310 (395)
Q Consensus 231 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 310 (395)
.+...+..|...|.+.+|+++.++++.. +|-....+..+-.++...|+--.+.+.|++.-+..+.-+|-+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 3445577889999999999999999873 56666677888889999999999999999988877776665544
Q ss_pred H
Q 016114 311 P 311 (395)
Q Consensus 311 ~ 311 (395)
+
T Consensus 353 d 353 (361)
T COG3947 353 D 353 (361)
T ss_pred h
Confidence 3
No 378
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.78 E-value=17 Score=31.42 Aligned_cols=147 Identities=13% Similarity=-0.019 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC---CCCcchHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHH
Q 016114 231 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG---PDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIREIA 304 (395)
Q Consensus 231 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 304 (395)
.+...|...+....|++|+.++-.|-+.+..... ..-...+..-..+.+||+...+ ...|..-+..+-+-+...
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3455677777888888888877766554432210 0001112222344566776654 345555555544444333
Q ss_pred c-----------CCCChHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH------
Q 016114 305 F-----------GKDSLPVGE---ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS------ 364 (395)
Q Consensus 305 ~-----------~~~~~~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~------ 364 (395)
+ |+..|+.+- ....-|.+.+++|+.+ +|.++++.+...+.+..-++. ....+..+|.
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~d-eAye~le~a~~~l~elki~d~--~lsllv~mGfeesdaR 321 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRD-EAYEALESAHAKLLELKINDE--TLSLLVGMGFEESDAR 321 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHeeccch--HHHHHHHcCCCchHHH
Confidence 3 444555432 3334588899999999 999999999887766433221 2222222221
Q ss_pred --HHHHhcchhhhchhhH
Q 016114 365 --YLDKLGRKEEKFPLKK 380 (395)
Q Consensus 365 --~~~~~g~~~~A~~~~~ 380 (395)
+-...|+.+.|..++.
T Consensus 322 laLRsc~g~Vd~AvqfI~ 339 (568)
T KOG2561|consen 322 LALRSCNGDVDSAVQFII 339 (568)
T ss_pred HHHHhccccHHHHHHHHH
Confidence 1223467777777654
No 379
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.50 E-value=10 Score=28.44 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHH-----hhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc-----C--ChHHHHHHH
Q 016114 57 LLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE-----G--KAVDAESVF 124 (395)
Q Consensus 57 ~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~ 124 (395)
....+.+.+|..+. ..++...|++.+..+-+. ..+.+...+|.++..- + +..+|++++
T Consensus 66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~ 135 (248)
T KOG4014|consen 66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYM 135 (248)
T ss_pred CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHH
Confidence 34455666665554 235678888888776542 2334555666655432 2 256777887
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHH------------------------HCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKC------------------------ANGNAEEAVELYKKALRVIKDSNYMS 180 (395)
Q Consensus 125 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~~~~~~a~~~~~~~~~~~ 180 (395)
.++.++ ....+.++|+..|. ...+.+.|..+.-+|-++
T Consensus 136 traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel-------- 197 (248)
T KOG4014|consen 136 TRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL-------- 197 (248)
T ss_pred HHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--------
Confidence 777653 11223344444433 335566666666666553
Q ss_pred CCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhh
Q 016114 181 LDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~ 221 (395)
+.+ .+..|+.+.|-.- .+.++|..+-.+|.++.+...
T Consensus 198 -~~~---~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 198 -DIP---QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred -CCh---HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 222 2234566655432 256788888888888876654
No 380
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.38 E-value=1.4 Score=34.05 Aligned_cols=55 Identities=24% Similarity=0.471 Sum_probs=48.9
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 68 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 68 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
.....|+.+.|.+.|.+++.+ .|.....+..+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 445678999999999999987 5777888999999999999999999999999987
No 381
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.97 E-value=23 Score=32.03 Aligned_cols=177 Identities=11% Similarity=-0.031 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 266 (395)
...+......-...|+++...-.+++++--+. .....|...+......|+.+-|...+..+.++.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~------- 361 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIH------- 361 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-------
Confidence 34455666667788999999999998876432 234567777777788899999988888887753
Q ss_pred CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
.+....+...-+......|++..|...++...+-. |....+-..-.......|+.+ .+.. +........
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~-~~~~-~~~l~s~~~- 430 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLE-DANY-KNELYSSIY- 430 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchh-hhhH-HHHHHHHhc-
Confidence 34444455556777788999999999998876633 333333333444555667666 5553 222222211
Q ss_pred ccCCCCHHH-HHHHHHHHHH-HHHhcchhhhchhhHHHHHHHHHHH
Q 016114 347 EFGSESEEV-MLTLKKVVSY-LDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 347 ~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
.+..++.. ...+...++. +.-.++.+.|...+.+++++.+..+
T Consensus 431 -~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 431 -EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred -ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 12333322 2334444544 4446788888888888887765543
No 382
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.83 E-value=20 Score=31.09 Aligned_cols=116 Identities=12% Similarity=-0.010 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC---cChHHHHHHHHHHHHHHHhhCc---hhHHHHHHHHHHHHHHHh
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KTSILLVTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELN 92 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~ 92 (395)
.++..|...+....|++|+.++-.|-+.+..... .....++..-..+-+||+...+ .++|..-+..+-.-+...
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3566777888889999999888777665433200 0011223333445577776654 456666655555544443
Q ss_pred c-----------CCCChhhh---hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 93 R-----------GTESADLV---LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 93 ~-----------~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
. |+..|..+ ..+..-|.+.+++|+-++|.++++.+...+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 3 34445443 345566999999999999999999998776654
No 383
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.81 E-value=29 Score=32.96 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
.|.-|+.+.+. .+.+...+..++...|..++..|++++|...|-+++...
T Consensus 349 ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 349 LYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred hHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 34445555554 355667778888899999999999999999999987653
No 384
>PF13041 PPR_2: PPR repeat family
Probab=86.62 E-value=3.7 Score=22.93 Aligned_cols=28 Identities=21% Similarity=-0.008 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
.++..+-..+.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677888899999999999999998875
No 385
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=86.62 E-value=3.6 Score=25.93 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 317 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 317 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
...|..+...|+.+ .|+.+|++++....+.+.-..+ .......+++|..+-++......
T Consensus 12 I~kaL~~dE~g~~e-~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~~~~ 70 (79)
T cd02679 12 ISKALRADEWGDKE-QALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKTNLN 70 (79)
T ss_pred HHHHhhhhhcCCHH-HHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHHHHH
Confidence 34444455568888 8999999999888775543332 11222345555555555544433
No 386
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.41 E-value=3.2 Score=34.62 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHH
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 124 (395)
.+.-+...|+-.+.++++++|...|..|..+....+|..+.....+++..|..++..+++...+-.+
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555777899999999999999999999999999999899999999999999999998887765544
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.41 E-value=53 Score=35.56 Aligned_cols=111 Identities=12% Similarity=0.028 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 304 (395)
......+|.+.|++....|+++.|...+-+|.+. ....+....|..++.+|+...|+..+++.++....-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 4567889999999999999999999988887662 244577889999999999999999999999765332
Q ss_pred cCCC---Ch------HHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHH
Q 016114 305 FGKD---SL------PVGEALDCLVSIQTRLGEDDT-KLLELLKRVLRIQE 345 (395)
Q Consensus 305 ~~~~---~~------~~~~~~~~l~~~~~~~~~~~~-~A~~~~~~al~~~~ 345 (395)
.... .| ....+...++......++.+. .-+.+|+.+.++..
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1111 01 112234455556666666542 33566777776654
No 388
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=86.16 E-value=1.7 Score=21.01 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
+++.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998764
No 389
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=85.88 E-value=2.6 Score=33.05 Aligned_cols=108 Identities=16% Similarity=0.023 Sum_probs=64.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHcCCCC---h-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH
Q 016114 279 ITLYHLNRDKEAEKLVLEALYIREIAFGKDS---L-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 354 (395)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 354 (395)
...+..|+++.|+++..-+++.-..++.... | .+++....-+......|+.- +. .+......+. ....-...-
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~-e~-~~~~~~~~l~-~~~dmpd~v 167 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESV-EP-YFLRVFLDLT-TEWDMPDEV 167 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCC-Ch-HHHHHHHHHH-hcCCCChHH
Confidence 3567899999999999999886544322111 1 12233333445555666543 11 1233333332 222333344
Q ss_pred HHHHHHHHHHHHH---------HhcchhhhchhhHHHHHHHHHH
Q 016114 355 VMLTLKKVVSYLD---------KLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 355 ~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
.+..+..+|..+. ..++...|..++++|+.+.++.
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 5566777777773 4567889999999999987664
No 390
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.74 E-value=2 Score=33.28 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=48.1
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 26 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
.....++.+.|.+.|.+++.+. |.....|+.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4457789999999999999874 566778999999999999999999999999987
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.49 E-value=1.3 Score=22.95 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcchhhhchhhH--HHHHHH
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKK--RLSNLR 386 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~ 386 (395)
+.+..+|-.+..+|++++|+..|. -+..+.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 346778999999999999999944 655443
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.13 E-value=25 Score=30.57 Aligned_cols=65 Identities=6% Similarity=-0.032 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHH--HHHhhCchhHHHHHHHHHHHH
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK--VLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~ 88 (395)
......+...+..++|..|...+...... . .+.. . ...+..++. .++...++.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~~-~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---L-PGRE-E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cchh-h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566777888999999999999988763 1 1211 2 344555544 456678889999999887654
No 393
>PRK09169 hypothetical protein; Validated
Probab=83.69 E-value=70 Score=34.69 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 016114 354 EVMLTLKKVVSYLDKL 369 (395)
Q Consensus 354 ~~~~~~~~la~~~~~~ 369 (395)
....+.+.++++....
T Consensus 794 ~laq~aNa~aR~~~~~ 809 (2316)
T PRK09169 794 GLAQLANAMARLILKL 809 (2316)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344455555555433
No 394
>PRK09169 hypothetical protein; Validated
Probab=83.23 E-value=74 Score=34.56 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=12.0
Q ss_pred HHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 362 VVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 362 la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
++..+....+|.+.-.+-+-++.+...
T Consensus 753 lAnsLNaLsKwp~~~~c~~a~~~La~~ 779 (2316)
T PRK09169 753 LANSLNALSKWPQEPACQQAALLLAER 779 (2316)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 395
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=82.99 E-value=3.8 Score=20.27 Aligned_cols=27 Identities=37% Similarity=0.644 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
+++.+-..|.+.|++++|...|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356677889999999999999998765
No 396
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=82.79 E-value=27 Score=29.22 Aligned_cols=94 Identities=16% Similarity=0.256 Sum_probs=65.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH
Q 016114 152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 231 (395)
Q Consensus 152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (395)
+....++.++|++++++..+..+.. ..+..+..+...+|.++...|+..++.+.+...-+......+- .+.....
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~ 158 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSS 158 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-Chhhhhh
Confidence 3455669999999999999887653 2334556677889999999999999999999887776655432 2324444
Q ss_pred HHHHHH-HHHhhhcHHHHHH
Q 016114 232 LLNLAA-SYSRSKNFVEAER 250 (395)
Q Consensus 232 ~~~la~-~~~~~~~~~~A~~ 250 (395)
++.++. .|...|++.....
T Consensus 159 fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 555554 4555677765443
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.24 E-value=25 Score=28.54 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcC-----hHHHHHHHHHHH-HHHHhhCchhHHHHHHHHHHHHH
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-----SILLVTSLLGMA-KVLGSIGRAKKAVEIYHRVITIL 89 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~ 89 (395)
....+-.-+....-..||..|+..++++++........+ ..+.--.+..+| .++..++++.+.+.+.-+-...-
T Consensus 34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p 113 (309)
T PF07163_consen 34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 345566778888888999999999999998873321111 112233344444 46778899999988776654432
Q ss_pred HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH-----HHHHHHCCCHHHHHH
Q 016114 90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL-----AHAKCANGNAEEAVE 164 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-----a~~~~~~g~~~~A~~ 164 (395)
++. + +.++-.-...|.+.+++....+.-..-+.. +++..... |..+ -.++.=.|.+++|.+
T Consensus 114 Ekl----P---pkIleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp~-y~~vaELyLl~VLlPLG~~~eAee 179 (309)
T PF07163_consen 114 EKL----P---PKILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLPE-YGTVAELYLLHVLLPLGHFSEAEE 179 (309)
T ss_pred ccC----C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCchh-hHHHHHHHHHHHHhccccHHHHHH
Confidence 221 2 233444456788889888777766555542 22222211 3334 445556899999998
Q ss_pred HHH
Q 016114 165 LYK 167 (395)
Q Consensus 165 ~~~ 167 (395)
+..
T Consensus 180 lv~ 182 (309)
T PF07163_consen 180 LVV 182 (309)
T ss_pred HHh
Confidence 873
No 398
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.96 E-value=12 Score=33.19 Aligned_cols=100 Identities=15% Similarity=0.037 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHH
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---GRAKKAVEIYHRVITILE 90 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~ 90 (395)
|...+....-|.-.+..+....|+..|.+++.. .|.....+.+.+.++... |+.-.|+.-...++++
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl-- 440 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL-- 440 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--
Confidence 344454555566566667788888888888764 244556666777777665 3444555555555544
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 129 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (395)
+|....+++.|+.++...+++.+|+.....+..
T Consensus 441 ------n~s~~kah~~la~aL~el~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 441 ------NPSIQKAHFRLARALNELTRYLEALSCHWALQM 473 (758)
T ss_pred ------ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 677888999999999999999999988765543
No 399
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.90 E-value=10 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
+...|.-.-..|++++|+.+|.++++.+...
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3444556678899999999999999987654
No 400
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.99 E-value=28 Score=28.28 Aligned_cols=219 Identities=13% Similarity=0.040 Sum_probs=115.2
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchh-HHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK-KAVEIYHRVITILE 90 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~ 90 (395)
...+..+.++.=+..+.+.|++..|.++..-.++...+...+.+ ......++.+....+.-+ +-.++..+++...
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS- 80 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS- 80 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-
Confidence 44566777888888999999999999988888888766422222 223345566665554332 4566777777776
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH--------HHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK--------IYTKVYGENDGR-VGMAMCSLAHAKCANGNAEE 161 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 161 (395)
+ .+......+..+..+|..+.+.|++.+|..+|-.+-. +.........+. ...........|...++...
T Consensus 81 ~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~ 159 (260)
T PF04190_consen 81 K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRD 159 (260)
T ss_dssp H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHH
T ss_pred c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHH
Confidence 2 2334445677888999999999999999988843211 111111111122 22222233345677899999
Q ss_pred HHHHHHHHHHHHHhc--------ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH
Q 016114 162 AVELYKKALRVIKDS--------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 233 (395)
Q Consensus 162 A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 233 (395)
|...+..-.+..... ....+..|.+..++. +-.+ ...+ +...|....+.+..... .+|.....+.
T Consensus 160 A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t-~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~ 232 (260)
T PF04190_consen 160 ANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLT-CERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLD 232 (260)
T ss_dssp HHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHH-HHHT-----HHHHHHHHHHTHH----HHHHTHHHHH
T ss_pred HHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHH-HhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHH
Confidence 988887766653221 011223343332222 2222 2223 23455555444433321 1344555666
Q ss_pred HHHHHHHhh
Q 016114 234 NLAASYSRS 242 (395)
Q Consensus 234 ~la~~~~~~ 242 (395)
.+|..|...
T Consensus 233 ~IG~~yFgi 241 (260)
T PF04190_consen 233 KIGQLYFGI 241 (260)
T ss_dssp HHHHHHH--
T ss_pred HHHHHHCCC
Confidence 677776654
No 401
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.49 E-value=18 Score=32.85 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=35.2
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 69 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 69 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
..+.|+++.|..+..++-. ..-+..||......|++..|.+++.++....
T Consensus 647 al~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred hhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 3456777777665544322 2346678999999999999999999887653
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.29 E-value=39 Score=29.39 Aligned_cols=139 Identities=15% Similarity=-0.009 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE--LLHIVGRGQEGRELLEECLLITEKYKG 222 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (395)
.....+.-.+..++|..|...+....... ++... ...+..++. .++...++++|.+.++..+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl------~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l-- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRL------PGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL-- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC------Cchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh--
Confidence 44556777889999999999999987641 12222 233445544 4455668889999998876542110
Q ss_pred CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114 223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 302 (395)
......+..+..+ -++...+...............+.....+..-|.--...|+|+.|...+-+++++..
T Consensus 203 ---~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 203 ---NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred ---HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 0011111111111 122222222111111100000111222233334334468999999999989988765
Q ss_pred H
Q 016114 303 I 303 (395)
Q Consensus 303 ~ 303 (395)
+
T Consensus 273 Q 273 (379)
T PF09670_consen 273 Q 273 (379)
T ss_pred H
Confidence 4
No 403
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.44 E-value=13 Score=23.26 Aligned_cols=32 Identities=6% Similarity=-0.049 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114 190 RIDLAELLHIVGRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (395)
+...|.-+-..|++.+|+.+|+++++...+..
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 45566677788999999999999999877654
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.87 E-value=20 Score=25.23 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=54.3
Q ss_pred CchhHHHHHHHHHHHHHHHhc-CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114 73 GRAKKAVEIYHRVITILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 151 (395)
Q Consensus 73 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 151 (395)
|.-..-...+++++..+.... -.+++.....+...+. ..+++.+.|...... ..| ...+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~------~~~~~~~if~~l~~~---~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD------LSSDPREIFKFLYSK---GIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT------TBSHHHHHHHHHHHH---TTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH------HccCHHHHHHHHHHc---Ccc---HHHHHHHHHHHH
Confidence 455566678888887764421 1234455555544443 223777777765542 122 335567888899
Q ss_pred HHHHCCCHHHHHHHHHHHH
Q 016114 152 AKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 152 ~~~~~g~~~~A~~~~~~a~ 170 (395)
.+...|++.+|.++|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998864
No 405
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=77.64 E-value=6.9 Score=19.27 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
++..+...+.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788899999999999999988765
No 406
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.35 E-value=57 Score=29.69 Aligned_cols=177 Identities=17% Similarity=0.119 Sum_probs=100.7
Q ss_pred cCChHHHHHHHHHHHHHHHHH----hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-------------
Q 016114 114 EGKAVDAESVFSRILKIYTKV----YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS------------- 176 (395)
Q Consensus 114 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------- 176 (395)
...|++|...|.-+.....-. .-..+|.-...+..++.++..+|+.+-|....++++-.....
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 445778888887776654211 012356667889999999999999999999999988765543
Q ss_pred -ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHH-HhhhcHHHHHHHHHH
Q 016114 177 -NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRI 254 (395)
Q Consensus 177 -~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~ 254 (395)
.+..+.+.....++...-..+...|-+..|.++.+-.+.+-. ..+|..+ ..+..+| .+..+|+=-++.++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp----~eDPl~~---l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDP----SEDPLGI---LYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----cCCchhH---HHHHHHHHHHHHhHHHHHHHHHH
Confidence 111122222233334444556678999999999887766521 1133222 2222222 334444444444433
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHH
Q 016114 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIR 301 (395)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 301 (395)
.-. ..+. ..-|..... ..+|..|..... -..|...+.+|+.+.
T Consensus 404 ~e~-~n~l--~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PEN-MNKL--SQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHh-hccH--hhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 311 1111 112333222 356666666655 567888888887764
No 407
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=77.12 E-value=14 Score=22.51 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
+...|.-.-..|++++|+.+|.++++.+...
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4455666778999999999999999876543
No 408
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.52 E-value=17 Score=22.77 Aligned_cols=29 Identities=21% Similarity=0.015 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
...|.-.-..|++++|+.+|.++++.+..
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34555666789999999999999998766
No 409
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=74.80 E-value=26 Score=31.73 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=70.3
Q ss_pred CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH-HHH
Q 016114 264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR-VLR 342 (395)
Q Consensus 264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~-al~ 342 (395)
++.++....... ++..+...++...+.-....++.. .+..+.+..+|+......|... .+...+.. +..
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~-~~~~~~~~~a~~ 130 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQF-LALADISEIAEW 130 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHH-HHHHHHHHHHHh
Confidence 344555544444 676777778877776666665542 2445566778887777766655 44333333 333
Q ss_pred HHHhccCCCCH----HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 343 IQEREFGSESE----EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 343 ~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
.. +.+. .....+. ++......|+..++....+++..+.+++...
T Consensus 131 ~~-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 131 LS-----PDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred cC-----cchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 21 1111 1122233 6889999999999999999999998887554
No 410
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.24 E-value=16 Score=33.08 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=36.3
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 196 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
+....|+++.|.++..++-. ..-|..||.+....+++..|.+++.++.+.
T Consensus 646 lal~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34467888888776554321 234678899999999999999999988663
No 411
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=73.93 E-value=19 Score=22.50 Aligned_cols=29 Identities=41% Similarity=0.511 Sum_probs=23.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 148 SLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 148 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
..|.-+-..|++++|+.+|.++++.+...
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34455566899999999999999987664
No 412
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=73.80 E-value=37 Score=25.86 Aligned_cols=114 Identities=22% Similarity=0.151 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC--CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKG--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 268 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 268 (395)
...+......|++++|...++++.+...+... ..+|. +..-|.+-..+..|.+|..++.-.-.- ...+++..
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe----l~~ag~~~~a~QEyvEA~~l~~~l~~~--~~ps~~EL 106 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE----LYFAGFVTTALQEYVEATLLYSILKDG--RLPSPEEL 106 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHhhcchHHHHHHHHHHHHHHhcC--CCCCHHHc
Confidence 44556677889999999999988876654421 11222 222244444556677777665433221 11011101
Q ss_pred chHHH--HHHH----------HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114 269 SISFP--MLHL----------GITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 310 (395)
Q Consensus 269 ~~~~~--~~~l----------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 310 (395)
.+... ...+ .......|++++|...++-.-.++.....-+.|
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP 160 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYP 160 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 11111 1122 223456788888888877666666555433334
No 413
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.56 E-value=49 Score=27.07 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114 78 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 155 (395)
Q Consensus 78 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 155 (395)
|..+|.+|..+ .|..+..++.+|.++...|+.-.|+-+|-+++-. ..|. ..+..++..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67889999988 5788899999999999999999999999998843 2343 4566777777666
No 414
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=73.40 E-value=20 Score=22.65 Aligned_cols=32 Identities=16% Similarity=-0.046 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKG 222 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (395)
.+.|..+-..|+.++|+.+|++++....+...
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 34455555668999999999999998876553
No 415
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.02 E-value=32 Score=30.86 Aligned_cols=90 Identities=17% Similarity=0.016 Sum_probs=61.1
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC---ChHHHHHHHHHHHHHHHHHhCCCChhH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDGRV 142 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~ 142 (395)
|.-.+..+....++..|.+++.. .|.....+.+.+.++++.+ +.-.|+.-...++++ +|..
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~ 444 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSI 444 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHH
Confidence 33334445566777777777664 4555667777777777654 333444444444443 6777
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
..+++.|+.++...+++.+|+.+...+..
T Consensus 445 ~kah~~la~aL~el~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 445 QKAHFRLARALNELTRYLEALSCHWALQM 473 (758)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 88999999999999999999988765543
No 416
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.89 E-value=20 Score=22.44 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 316 LDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 316 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
+...|.-.-..|+++ +|+.+|.++++.+..
T Consensus 9 ~a~~Ave~D~~g~y~-eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYS-EAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHH-HHHHHHHHHHHHHHH
Confidence 445555667789999 999999999998876
No 417
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=72.57 E-value=48 Score=26.60 Aligned_cols=183 Identities=12% Similarity=0.001 Sum_probs=102.3
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcccCCCCc
Q 016114 105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDD 183 (395)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (395)
..++.+....++|++...+..+++.... + ......-.+.++.+|-. .|..-.+.+.+.. ++.-... .+ +.
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~--~~-~~ 75 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEES--RG-NE 75 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhc--cC-ch
Confidence 4567888889999999999998876421 0 01112223344444432 3555566666554 2211110 01 11
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC---hhHHHHHHHHHHHHHhh-----h-----cHHHHHH
Q 016114 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH---PSFVTHLLNLAASYSRS-----K-----NFVEAER 250 (395)
Q Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----~-----~~~~A~~ 250 (395)
... .+..-|. ..=-++=.......+.+.....-+.. ...+..+-..|..|.-. | -.+.|..
T Consensus 76 ~~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DHV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111 1111111 01122344556666666655543321 12222333345444332 2 2458899
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHH
Q 016114 251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 302 (395)
.|+.|.++....+.+.+|.......+.+..|.. .++.++|..+.+++++-..
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999998877788888877777777776665 6999999988888776553
No 418
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.39 E-value=87 Score=29.48 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=13.0
Q ss_pred HHHHhhhcHHHHHHHHHH
Q 016114 25 SMYSTLENYEKSMLVYQR 42 (395)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~ 42 (395)
.++.-.|+|+.|+.++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 345567999999998876
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.27 E-value=33 Score=24.14 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHHHHHhh-hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 016114 201 GRGQEGRELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 279 (395)
Q Consensus 201 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 279 (395)
|.-..-..++++++..+... .-.+++.....+...+.... .+.++|..... +.. ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~---~~I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYS---KGI---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHH---HTT---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHH---cCc---cHHHHHHHHHHHH
Confidence 45556667888888776432 11245555666655554322 67777765544 222 2356677888999
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 016114 280 TLYHLNRDKEAEKLVLEAL 298 (395)
Q Consensus 280 ~~~~~g~~~~A~~~~~~al 298 (395)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 420
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=70.77 E-value=57 Score=26.67 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH
Q 016114 120 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199 (395)
Q Consensus 120 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 199 (395)
|..+|.+|..+ .|..+..++.+|.++...|+.-.|+-+|-+++-. ..|. ..+..|+...+..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~---------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV---------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS---------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc---------CCCc-HHHHHHHHHHHHH
Confidence 67899999988 4666788999999999999999999999998842 1222 3345677777666
No 421
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.55 E-value=58 Score=26.64 Aligned_cols=137 Identities=17% Similarity=0.117 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCc---hHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD---SIMENMRIDLA-ELLHIVGRGQEGRELLEECLLITEKY 220 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (395)
.+-.-+....-..||..|++.++++++..........+. ..+...+..+| .++.++|++.+.+.+.-+-.+.-++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 344456666777889999999999999873321111111 12222233333 46778899999888765544332221
Q ss_pred hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHH-----HhcCChHHHHHHHH
Q 016114 221 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL-----YHLNRDKEAEKLVL 295 (395)
Q Consensus 221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~ 295 (395)
.+. ++..-..+|.+.+++....+.-..-+.. +++.... -+..++++| .=.|.+++|+++..
T Consensus 117 ----Ppk---IleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp-~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 ----PPK---ILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLP-EYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ----CHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCch-hhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 222 3333455688999988877766554441 2222222 244445444 45799999988763
No 422
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=70.51 E-value=44 Score=25.28 Aligned_cols=149 Identities=13% Similarity=0.019 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Q 016114 123 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-----ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 197 (395)
Q Consensus 123 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~ 197 (395)
-|+.|..+++.... ......+.+.+|..+. ..+++..|++.+..+-+. +. ..+..++|.++
T Consensus 50 nF~~A~kv~K~nCd--en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~---~~aC~~~gLl~ 115 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCD--ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NI---PQACRYLGLLH 115 (248)
T ss_pred HHHHHHHHHHhccc--ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CC---HHHHhhhhhhh
Confidence 34444444444322 2223344555554443 345788899888887652 11 12334566555
Q ss_pred HHc-----C--ChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH------------------------HHHHhhhcHH
Q 016114 198 HIV-----G--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA------------------------ASYSRSKNFV 246 (395)
Q Consensus 198 ~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la------------------------~~~~~~~~~~ 246 (395)
..- + +..+|++++.++-++- ...+.++|. ..+.-..+.+
T Consensus 116 ~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd 185 (248)
T KOG4014|consen 116 WNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD 185 (248)
T ss_pred ccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence 432 2 2567888888775531 111222222 2233345667
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHc
Q 016114 247 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----NRDKEAEKLVLEALYIREIAF 305 (395)
Q Consensus 247 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~ 305 (395)
.|.++.-+|.++ ....+..++++.|..- .+.++|..+-.+|.++.++.-
T Consensus 186 ka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 186 KALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred HHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 777766666552 3345566777766542 467889999999998887654
No 423
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.50 E-value=13 Score=32.69 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=32.4
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 240 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 240 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
...|+...|-.-...++... +..|. .....+.+....|+|+.+...+..+-.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-----~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~ 351 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-----QQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEK 351 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-----CCCch---hhHHHHHHHHHhhhHHHHHHHhhchhh
Confidence 34577777766666665521 22333 334567788899999998877655443
No 424
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=70.48 E-value=1.4e+02 Score=30.98 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=96.1
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHC------------------------
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN------------------------ 156 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------ 156 (395)
+...-.+|..+...|++.+|+..|..|+...+.. .|+...+.++-.++.+..-.
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 4456678999999999999999999999998774 34444555544443322110
Q ss_pred --------------------------------CCHHHHHHHHHHHHHHHHhccc--CC-CCchHHHHHHHHHHHHHHHcC
Q 016114 157 --------------------------------GNAEEAVELYKKALRVIKDSNY--MS-LDDSIMENMRIDLAELLHIVG 201 (395)
Q Consensus 157 --------------------------------g~~~~A~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~~la~~~~~~g 201 (395)
.-.+.=...+++++..+.+... .. ........+....+.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 0011112233444444433210 00 111223445566666666666
Q ss_pred --------------------ChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 202 --------------------RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 202 --------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
.-.++..++.+++...-... ...+....+..+|.+|...|-..+..=+++.++...
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 56677777788777643322 345667889999999999999988888888777654
No 425
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=70.44 E-value=41 Score=24.84 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=64.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 016114 234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 313 (395)
Q Consensus 234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 313 (395)
.+...-...|.+.+|.+++.+.++. ....+...+|..++.|.....+-.--..--++..+.......+..|..+
T Consensus 98 eqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWa 171 (220)
T PF10858_consen 98 EQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWA 171 (220)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHH
Confidence 3444556778999999999998874 2334566778888888776654332222223333333333456667666
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114 314 EALDCLVSIQTRLGEDDTKLLELLKRVLR 342 (395)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 342 (395)
.+-..-+..-.+.|... +|+..++..+.
T Consensus 172 tAtI~kaiwdik~nm~~-~aeknL~~l~~ 199 (220)
T PF10858_consen 172 TATIIKAIWDIKNNMKN-QAEKNLKNLLA 199 (220)
T ss_pred HHHHHHHHHHHHcCCcH-HHHHHHHHHHh
Confidence 65555555556677777 89988887764
No 426
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=69.58 E-value=19 Score=27.30 Aligned_cols=48 Identities=21% Similarity=0.008 Sum_probs=39.4
Q ss_pred CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 016114 265 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 312 (395)
Q Consensus 265 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 312 (395)
...|....++.++..-|..+|+++.|....+.+++-.....|.+||++
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 345677788899999999999999999999999999988888888863
No 427
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.08 E-value=1.4e+02 Score=30.14 Aligned_cols=185 Identities=13% Similarity=0.061 Sum_probs=106.8
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH---------H---------hCCC--ChhH-HHHHHHHHHHHHHCCCHH
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTK---------V---------YGEN--DGRV-GMAMCSLAHAKCANGNAE 160 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~---------~~~~--~~~~-~~~~~~la~~~~~~g~~~ 160 (395)
...+.+|.+|...|+..+|+.+|.+|..-..+ . -|.. .+.+ ...|...-.++...+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 34566888899999999999999998753211 0 0110 1111 223344455666667777
Q ss_pred HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114 161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240 (395)
Q Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 240 (395)
.+......|++. .+++.+..+.++.++=..+...|.+.+|...+-+ .++......++..+..++.
T Consensus 1001 ~vcQlA~~AIe~------l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 1001 EVCQLAVKAIEN------LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHHh------CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHH
Confidence 777777777765 4566777777777777778888888877665432 1233334556777777888
Q ss_pred hhhcHHHHHH-----HHHHHHH-HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHH-HHHHHHHHHH
Q 016114 241 RSKNFVEAER-----LLRICLD-IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE-KLVLEALYIR 301 (395)
Q Consensus 241 ~~~~~~~A~~-----~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 301 (395)
..|+++.-.+ +-++... +...............|..|-..+...+++.+|- .+|+.+..+.
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 8877653221 1112212 1111111122222233444445667788888665 4666666654
No 428
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.99 E-value=72 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
..+...++.+-.++|+..+|.+.++...+
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 33445677777777777777777765443
No 429
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.44 E-value=25 Score=21.35 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 50 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 50 (395)
+..+...|.-.-..|++++|+.+|.++++.+...
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445667778888999999999999999887554
No 430
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.41 E-value=1e+02 Score=28.25 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=100.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHh----cCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC---------
Q 016114 30 LENYEKSMLVYQRVINVLESR----YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE--------- 96 (395)
Q Consensus 30 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 96 (395)
...|++|...|.-++...... .-.++|..+..+..++.++..+|+.+-|....++++-.++....+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456778888888777654321 1124578889999999999999999999999999998877764321
Q ss_pred ----Chh---hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114 97 ----SAD---LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKK 168 (395)
Q Consensus 97 ----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 168 (395)
.|. ...+++..-..+...|=+..|.+++.-.+.+ .+. +|.- +...+-.......+|.=-+++++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~--~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLG--ILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchh--HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 1123333344556678888888888777665 222 3322 122222222333444444444443
Q ss_pred HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Q 016114 169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEECLLIT 217 (395)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 217 (395)
.-.. .+. . ..|..... ..+|..|..... -+.|...+.+|+...
T Consensus 404 ~e~~-n~l---~-~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PENM-NKL---S-QLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHhh-ccH---h-hcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 3221 110 0 11111111 346666666655 456777888877654
No 431
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.25 E-value=1e+02 Score=28.25 Aligned_cols=318 Identities=13% Similarity=0.002 Sum_probs=155.0
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhH-HhHHH
Q 016114 31 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL-FSLGS 109 (395)
Q Consensus 31 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~l~~ 109 (395)
++..+....++.+....-. ..|.....|...|..-.+.|..+.+.+.|++++.-. |.....+ ..++.
T Consensus 55 ~~~~~~~~~~r~~y~~fL~----kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai--------p~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 55 NDSIEDVDALREVYDIFLS----KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI--------PLSVDLWLSYLAF 122 (577)
T ss_pred cCchhHHHHHHHHHHHHHh----hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--------hhHHHHHHHHHHH
Confidence 3444444555555544322 246666677788888899999999999999998764 2222222 22334
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH
Q 016114 110 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 189 (395)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (395)
+...-|+.+.-...|++|.......+ .....+-..-..-..++++..-...|++.+++-... -......
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF-----~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~------~~~~f~~ 191 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDF-----LSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQ------LNRHFDR 191 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccch-----hccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhH------hHHHHHH
Confidence 44456677776777777776643221 111122222223356677777777777777652211 0000000
Q ss_pred HHHHHHH--HHHcCChHHHHHHHHHHHH---------------HHHhhhCCCChhHHHHHHHHHH-------HHHhhhcH
Q 016114 190 RIDLAEL--LHIVGRGQEGRELLEECLL---------------ITEKYKGKEHPSFVTHLLNLAA-------SYSRSKNF 245 (395)
Q Consensus 190 ~~~la~~--~~~~g~~~~A~~~~~~al~---------------~~~~~~~~~~~~~~~~~~~la~-------~~~~~~~~ 245 (395)
+.....- ....-..++....-..... ..-+..+...+........+.. ++......
T Consensus 192 f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~ 271 (577)
T KOG1258|consen 192 FKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEE 271 (577)
T ss_pred HHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhH
Confidence 0000000 0000111222111111110 0000000001111111111111 11122222
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114 246 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 325 (395)
Q Consensus 246 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (395)
.+..-.++..+...-....+..+.....|......-...|+++...-.+++++--. ......+...+.....
T Consensus 272 ~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 272 EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMES 343 (577)
T ss_pred HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHH
Confidence 23333333332211111122233344556666667778899999999998887644 1223446666666666
Q ss_pred cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 326 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 326 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
.|+.. -|...+..+.++.. +.. ..+...-+..-...|++..|...+++..+-.+
T Consensus 344 ~~~~~-~~~~~~~~~~~i~~----k~~---~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 344 SGDVS-LANNVLARACKIHV----KKT---PIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred cCchh-HHHHHHHhhhhhcC----CCC---cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 67777 66666666665532 223 33444456667777888888888887765443
No 432
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=67.25 E-value=65 Score=25.93 Aligned_cols=182 Identities=14% Similarity=0.085 Sum_probs=98.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEH 225 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (395)
..+|.+....++|++.+.+..++++..... ..+. .-.+.++.+|- ..|....+...+.. ++......+ .
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~---eLt~----EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~--~ 74 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSE---ELTV----EERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG--N 74 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCc---cCCH----HHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccC--c
Confidence 457788888999999999999987742100 0111 11133444442 24566666666554 222111111 1
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC--cc-hHHHHHHHHHHHHh-----cCC-----hHHHHH
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD--QS-ISFPMLHLGITLYH-----LNR-----DKEAEK 292 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~-~~~~~~~la~~~~~-----~g~-----~~~A~~ 292 (395)
... ..+..-|.. .=-++-..+....+.+....+-+.. +. .+..+-..|..|.- .|+ .+.|..
T Consensus 75 ~~~----~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 75 EDH----VASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred hHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111 111111211 1123444566667776665544332 11 12222223333322 222 458899
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHHH
Q 016114 293 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTR-LGEDDTKLLELLKRVLRIQ 344 (395)
Q Consensus 293 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~al~~~ 344 (395)
.|++|.++....+.|.||-......+.+..+.. .++++ +|..+.+++++-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~-~A~~lAk~afd~A 201 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPD-RACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHH
Confidence 999999998887888898877666666666554 57777 8887777776544
No 433
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=67.24 E-value=74 Score=26.61 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=52.5
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA-MCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|+...+++..+...+..|+|..|-.++-....+. .+.++....+ |..+| .-.-..+|+-|.+-+.+..+....
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~----~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALV----SDPDRNYLSALWGKLA-SEILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc----CCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHcc
Confidence 57788899999999999999999998876554443 2334433333 33443 334567899999999888877654
No 434
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=66.73 E-value=1e+02 Score=28.11 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=49.9
Q ss_pred hhhhHHhHHHHHHH--cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 100 LVLPLFSLGSLFIK--EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 100 ~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
.+.++.+||.+-.. ...-..++.+|.+++...+..++..|. .-|..+|..+++.+++.+|+..+-++-...+.-+
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445555554332 233456789999999999888754433 3467788999999999999999999888776543
Q ss_pred c
Q 016114 178 Y 178 (395)
Q Consensus 178 ~ 178 (395)
+
T Consensus 353 Y 353 (618)
T PF05053_consen 353 Y 353 (618)
T ss_dssp -
T ss_pred c
Confidence 3
No 435
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=65.95 E-value=97 Score=27.48 Aligned_cols=140 Identities=12% Similarity=0.074 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHH--HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV--TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
.+...|.+...++++.+|...|.+..+-... .|... +.+.+...-.+-..+ +...+..+...++..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~-----~~f~lkeEvl~grilnAffl~n----ld~Me~~l~~l~~~~--- 75 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKES-----SPFLLKEEVLGGRILNAFFLNN----LDLMEKQLMELRQQF--- 75 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhc-----chHHHHHHHHhhHHHHHHHHhh----HHHHHHHHHHHHHhc---
Confidence 4567789999999999999999998775432 22221 222222222222333 334444444444433
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh----------HHHHHHHHHHHHHHCCCHHHHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR----------VGMAMCSLAHAKCANGNAEEAVELY 166 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~ 166 (395)
+.......-.|....+.+++.+|++.+...-...... .++. ....-...+.++...|++.++...+
T Consensus 76 -~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL 151 (549)
T PF07079_consen 76 -GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL 151 (549)
T ss_pred -CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 2334455567888899999999998876554432211 1111 0111234577889999999999999
Q ss_pred HHHHHHHH
Q 016114 167 KKALRVIK 174 (395)
Q Consensus 167 ~~a~~~~~ 174 (395)
++.+...-
T Consensus 152 n~i~~~ll 159 (549)
T PF07079_consen 152 NRIIERLL 159 (549)
T ss_pred HHHHHHHh
Confidence 99887653
No 436
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=65.84 E-value=31 Score=21.72 Aligned_cols=43 Identities=9% Similarity=-0.019 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC-CCCHHHHHHH
Q 016114 316 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-SESEEVMLTL 359 (395)
Q Consensus 316 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~ 359 (395)
+...|.-.-..|+++ +|+.+|.++++.+...+. ..++.....+
T Consensus 9 l~~~Ave~D~~g~y~-eAl~~Y~~aie~l~~~lk~e~d~~~k~~~ 52 (77)
T cd02683 9 VLKRAVELDQEGRFQ-EALVCYQEGIDLLMQVLKGTKDEAKKKNL 52 (77)
T ss_pred HHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 334455566778899 999999999988876542 3334444433
No 437
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=65.52 E-value=48 Score=24.41 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC-----------------------------C--CChhHHHHHHHHHHHH
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKG-----------------------------K--EHPSFVTHLLNLAASY 239 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~--~~~~~~~~~~~la~~~ 239 (395)
...+......|+.++|...+.++......... . ............+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 45677788889999999999998776542210 0 0112334455667788
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 240 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 240 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
...|+...|.+.++.+-.-..-..-.-.......-...+..+...|++.+|...+..+++
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999988775422000000000001122345678888999999999999988875
No 438
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.30 E-value=76 Score=26.01 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=64.8
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHH
Q 016114 31 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL 110 (395)
Q Consensus 31 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 110 (395)
|++-+|-..++..+...... ..+.........-+.+++..++...|..+.-..++..+... ..+.....-+++.+
T Consensus 20 ~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~---~ad~~~~~anl~~l 94 (312)
T KOG3024|consen 20 GDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAE---VADSLLKVANLAEL 94 (312)
T ss_pred ccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH---hhHhHHHHHHHHHH
Confidence 34445544444443322221 12223333344445555555555555555555544443311 01111112234444
Q ss_pred HHHcCChHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114 111 FIKEGKAVDA-ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169 (395)
Q Consensus 111 ~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 169 (395)
....+.-+.. ..+.+.+++..... +.........+..+|..+...+++.+|..+|-.+
T Consensus 95 l~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 95 LGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 4444433333 34455556554442 2222234456788999999999999999888543
No 439
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.27 E-value=70 Score=28.44 Aligned_cols=121 Identities=14% Similarity=0.054 Sum_probs=64.4
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH
Q 016114 154 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 233 (395)
Q Consensus 154 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 233 (395)
...|+.-.|-.-...++... +..|... ...+.+....|+|+.+...+..+-.+. +..+ .+..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-------~~~p~~i---~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~----~~~~ 361 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-------QQDPVLI---QLRSVIFSHLGYYEQAYQDISDVEKII----GTTD----STLR 361 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-------CCCchhh---HHHHHHHHHhhhHHHHHHHhhchhhhh----cCCc----hHHH
Confidence 34566666666555555532 2222222 335788899999999988776554332 2111 1222
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
.+-......|++++|.....-.+. +..+...+...-+..-...|-++++..++++.+.+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~--------~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLS--------NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhc--------cccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 333445667788887766554443 11112222222233334456667777777766654
No 440
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=64.82 E-value=54 Score=24.15 Aligned_cols=111 Identities=19% Similarity=0.142 Sum_probs=66.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc----cCC-------------------------CCchHHHHHHHHHHHHH
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSN----YMS-------------------------LDDSIMENMRIDLAELL 197 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~-------------------------~~~~~~~~~~~~la~~~ 197 (395)
...+......|+.++|...+.++...+.... ... ..+..........+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 4567777889999999999999887654210 000 00122233446677888
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 198 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
...|+...|.+.++.+-.-..-..-.-+......-...+..+...|++.+|...+..+++
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999888775421100000000112333445678888999999999999988875
No 441
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=64.21 E-value=98 Score=26.94 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=95.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH
Q 016114 153 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 232 (395)
Q Consensus 153 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (395)
++.++++.+|..+-+..+.-....+ ...-+...+.++..+..+|...|+...-...+..-+... ..+.+....+...
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~n-rRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLi 212 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQN-RRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLI 212 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHH
Confidence 3456888888887776654322110 011223456677888889999999777666666555443 2333445556667
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 233 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 233 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
+.|-..|...+.++.|.....++.- .+ ...+...++.++.+|.+..-+++|..|.+++-+|+...
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~--pe--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVY--PE--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccC--cc--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 7778889999999999887665431 00 01123567778899999999999999999999998754
No 442
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=63.61 E-value=33 Score=21.35 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 148 SLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 148 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
..|.-.-..|++++|+.+|.++++.+...
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34455567899999999999999987553
No 443
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=62.40 E-value=1.7e+02 Score=29.16 Aligned_cols=104 Identities=10% Similarity=0.141 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 100 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (395)
..+..++.....|++|+..|++...-+ +....--++.+..|.....+-.-..-...|.+|+..++... +.+..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 551 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGA 551 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCC
Confidence 345567777888899998888865543 12233456677778777655443333367777777777765 34445
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
+--|..-|.+|...|++++-++.+.-|++.+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 552 PLEYLGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred chHHHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 5557777888999999999999998887653
No 444
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.98 E-value=1.9e+02 Score=29.39 Aligned_cols=189 Identities=13% Similarity=0.099 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc------------------ccCCCCchHH-HHHHHHHHHHHHHcCChHH
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS------------------NYMSLDDSIM-ENMRIDLAELLHIVGRGQE 205 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------------~~~~~~~~~~-~~~~~~la~~~~~~g~~~~ 205 (395)
....+|.+|...|+..+|+.+|.+|..-..+. .+..+..+.. ...|...-.++..-+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 34567888999999999999999987532110 0000111111 2222233344444445555
Q ss_pred HHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC
Q 016114 206 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 285 (395)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 285 (395)
+.++...|++. .++++|..+....++-.-+...|.+-+|...+-+- ++......++..+-.+++..|
T Consensus 1002 vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHhcc
Confidence 55555555443 34566777777777777778888888776544321 233334557778888888888
Q ss_pred ChHHHHH-----HHHHHHH-HHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 286 RDKEAEK-----LVLEALY-IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 286 ~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
.++.-.. +-++... +.++.-..........+..|--.+...+++...|--+|+.+..+..+
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 7653221 1122222 11111111111122234455566777888886677788888876544
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.39 E-value=81 Score=25.06 Aligned_cols=105 Identities=13% Similarity=0.010 Sum_probs=58.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcc--cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114 152 AKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 229 (395)
Q Consensus 152 ~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (395)
..+..|+++.|+++..-+++...... +...-+..++.-...-+......|+.-+. .++.....+. ....-.+...+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHHH
Confidence 45688999999999999998643320 00011122333334445555556653322 1233333332 21211223344
Q ss_pred HHHHHHHHHHH---------hhhcHHHHHHHHHHHHHH
Q 016114 230 THLLNLAASYS---------RSKNFVEAERLLRICLDI 258 (395)
Q Consensus 230 ~~~~~la~~~~---------~~~~~~~A~~~~~~a~~~ 258 (395)
..+...|..+. ..++...|..++++|+.+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 55566677663 456788999999999985
No 446
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=60.49 E-value=35 Score=25.91 Aligned_cols=48 Identities=23% Similarity=0.181 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHH
Q 016114 307 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEV 355 (395)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 355 (395)
...|....++.++..-|...|+++ .|+...+++++-..+..|.++|+.
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~e-vav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYE-VAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhhhcccCC
Confidence 455777888999999999999999 999999999998888888888763
No 447
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=60.21 E-value=21 Score=17.79 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhh----hcHHHHHHHHHHHHH
Q 016114 18 AILLHMGSMYSTL----ENYEKSMLVYQRVIN 45 (395)
Q Consensus 18 ~~~~~l~~~~~~~----g~~~~A~~~~~~al~ 45 (395)
.+.+.+|.+|..- .+..+|..+++++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3566788877632 388999999988764
No 448
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.72 E-value=1.2e+02 Score=26.46 Aligned_cols=138 Identities=11% Similarity=0.049 Sum_probs=94.2
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH
Q 016114 112 IKEGKAVDAESVFSRILKIYTKVYGEN--DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 189 (395)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (395)
..+.++.+|...-...+.-... .... +.-.+..++.+..+|...|+...-...+..-+.... ...+....+..
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt----Lrhd~e~qavL 211 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT----LRHDEEGQAVL 211 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh----hcCcchhHHHH
Confidence 3457888888877766543211 0001 112456778888888899997776666666655543 34455556666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 190 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
.+.+-+.|...+.|+.|.....++.- .. ...+...+..++.+|.+..-+++|..|.+++-+|+..
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~--pe--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVY--PE--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccC--cc--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 67788889999999998887665421 00 1123467788889999999999999999999998764
No 449
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.24 E-value=36 Score=21.32 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=19.1
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHh
Q 016114 153 KCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 153 ~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
--..|++++|+.+|..+++.+..
T Consensus 16 eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHHHHH
Confidence 34568999999999999998754
No 450
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=58.83 E-value=41 Score=20.85 Aligned_cols=29 Identities=41% Similarity=0.527 Sum_probs=22.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 148 SLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 148 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
..|.-.-..|++++|+.+|..+++.+...
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34455566799999999999999987654
No 451
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=57.35 E-value=45 Score=20.78 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 50 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 50 (395)
+..+...|.-.-..|++++|+.+|.++++.+...
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445566777788999999999999999987654
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.47 E-value=36 Score=20.26 Aligned_cols=35 Identities=26% Similarity=0.149 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhhh
Q 016114 359 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV 393 (395)
Q Consensus 359 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 393 (395)
.......|...|++++|.++..+...-.......+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~~~~~~s~l~ 60 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSKDLQQESELL 60 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678889999999999999887777665543
No 453
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=56.20 E-value=1.6e+02 Score=26.95 Aligned_cols=70 Identities=26% Similarity=0.269 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 187 ENMRIDLAELLHI--VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 187 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
..++.+||.+-.. ...-..++.+|.+|+...+..++..| ...|..+|..+.+.+++.+|+..+-++-+..
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVI 348 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665443 23345679999999999988875433 3456778999999999999999988876644
No 454
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=55.12 E-value=24 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=28.3
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 2 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN 45 (395)
Q Consensus 2 l~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 45 (395)
|+++...+..+....+..+..+|..|...|+..+|-+++.+|-+
T Consensus 105 Ldki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 105 LDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34445555433344556678899999999999999999888765
No 455
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.67 E-value=1.3e+02 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 228 FVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
...+-..|+.+-.++|+..+|.+.++...+
T Consensus 274 l~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 274 LVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 344556889999999999999999887654
No 456
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=54.34 E-value=1.3e+02 Score=25.26 Aligned_cols=75 Identities=12% Similarity=-0.005 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
-.|+...+++..+...+..|+|..|-.++-....+. .+.++....++.+.-..-.-..+|+.|.+-+.+..+...
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~----~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALV----SDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 357888889999999999999999988776555443 233443444433322233445689999988888776653
No 457
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=52.90 E-value=55 Score=20.48 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=20.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 151 HAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.-.-..|+|++|..+|..+++.+...
T Consensus 14 ve~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 14 LEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33345599999999999999987653
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.69 E-value=1.8e+02 Score=26.31 Aligned_cols=76 Identities=8% Similarity=0.014 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC-hHHHHHHHHHHHHHHHHHhCCCC
Q 016114 61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
.+........+.+.+.+--..|.+++.. ||..+..|..-|.-.+..+. .+.|..++.+++.. .++.
T Consensus 107 lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~-----npds 173 (568)
T KOG2396|consen 107 LWLSYIAFCKKKKTYGEVKKIFAAMLAK--------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF-----NPDS 173 (568)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc-----CCCC
Confidence 3444444445556677888888888876 66666777666665555554 88899999999886 3455
Q ss_pred hhHHHHHHHH
Q 016114 140 GRVGMAMCSL 149 (395)
Q Consensus 140 ~~~~~~~~~l 149 (395)
|.....+..+
T Consensus 174 p~Lw~eyfrm 183 (568)
T KOG2396|consen 174 PKLWKEYFRM 183 (568)
T ss_pred hHHHHHHHHH
Confidence 6554444433
No 459
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.35 E-value=65 Score=27.47 Aligned_cols=111 Identities=8% Similarity=0.014 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 137 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 137 (395)
....+..++......+.....+....+++.-.... .......+..+-.+....++|.-+..++.--+.-..+..+.
T Consensus 101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~----~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h 176 (422)
T KOG2582|consen 101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS----NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPH 176 (422)
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhccC----ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCC
Confidence 44556667777777777777788888887765432 11334455556666777778777766665433222121222
Q ss_pred CChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 138 NDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 138 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.+|. ....++.-|.++...++++.|..+|..++-+
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3444 3334455677889999999999999998764
No 460
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=51.68 E-value=58 Score=20.37 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=21.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 149 LAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 149 la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.|.-.-..|++++|+.+|..+++.+...
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3444567799999999999999987653
No 461
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.60 E-value=86 Score=22.08 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhc-CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114 77 KAVEIYHRVITILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 155 (395)
Q Consensus 77 ~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 155 (395)
.=..++++++..+.... -.++|.....+...+... ++..+.|...... .-....+..+...|..+..
T Consensus 44 ~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~~A~~lE~ 111 (125)
T smart00777 44 GLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSK------GIGTKLALFYEEWAQLLEA 111 (125)
T ss_pred hHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CcchhhHHHHHHHHHHHHH
Confidence 34555666666554322 145677777776666542 3355555554331 1123455667788999999
Q ss_pred CCCHHHHHHHHHH
Q 016114 156 NGNAEEAVELYKK 168 (395)
Q Consensus 156 ~g~~~~A~~~~~~ 168 (395)
.|++.+|.++|+.
T Consensus 112 ~g~~~~A~~iy~~ 124 (125)
T smart00777 112 AGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHc
Confidence 9999999998864
No 462
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=49.64 E-value=35 Score=17.33 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=17.8
Q ss_pred HHHHHHH--HHHHhh-----hcHHHHHHHHHHHHH
Q 016114 18 AILLHMG--SMYSTL-----ENYEKSMLVYQRVIN 45 (395)
Q Consensus 18 ~~~~~l~--~~~~~~-----g~~~~A~~~~~~al~ 45 (395)
.+.+.+| .++..- .++++|..+|+++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4556677 433322 267888888888765
No 463
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.54 E-value=53 Score=28.40 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 315 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
+...+|.++...++++ +|+.+|++.+.+..+
T Consensus 24 ~~V~~gl~~dE~~~~e-~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWE-NALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHhhcchhhhcCHH-HHHHHHHHHHHHHHh
Confidence 4557888999999999 999999999988776
No 464
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=48.92 E-value=64 Score=20.08 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114 318 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 349 (395)
Q Consensus 318 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 349 (395)
..|.-....|+++ +|+.+|.++++.+.....
T Consensus 13 ~~Av~~d~~g~~~-eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 13 SKALKADEAGDYE-EALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHHHHHHHhc
Confidence 3444555678888 999999999988877543
No 465
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=48.49 E-value=2.7e+02 Score=27.20 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChH-HH-HHHHHHHHHHHHHH
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV-DA-ESVFSRILKIYTKV 134 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A-~~~~~~al~~~~~~ 134 (395)
.....+..-|.+.-..|--+-|-++|.+|..++++... ++.....+...+...+.....+. +- ..+..++.....+.
T Consensus 590 lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~Is-DSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKL 668 (762)
T PF03635_consen 590 LALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEIS-DSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKL 668 (762)
T ss_dssp HHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHh
Confidence 34444555555555666555688999999999986542 44444556666665555554443 21 12222333333332
Q ss_pred hCCCChhHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHhc
Q 016114 135 YGENDGRVGMAMCSLAHAKCANG----------NAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~a~~~~~~~ 176 (395)
+ ..|+...+...-+.+++... +-....+++++++++....
T Consensus 669 L--KK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~ 718 (762)
T PF03635_consen 669 L--KKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSC 718 (762)
T ss_dssp S--SHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCS
T ss_pred c--CcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHH
Confidence 2 34666666666666666543 5678899999999998764
No 466
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=48.35 E-value=1.5e+02 Score=24.23 Aligned_cols=73 Identities=18% Similarity=0.065 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 308 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 308 (395)
.....++=..+...++++.|....++.+.+ .|....-..--|.+|.+.|.+..|++-++..++.. |+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~-----P~ 247 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC-----PD 247 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC-----CC
Confidence 445566677788999999999999888873 23333344567899999999999999888776654 55
Q ss_pred ChHHHH
Q 016114 309 SLPVGE 314 (395)
Q Consensus 309 ~~~~~~ 314 (395)
.+....
T Consensus 248 ~~~a~~ 253 (269)
T COG2912 248 DPIAEM 253 (269)
T ss_pred chHHHH
Confidence 554433
No 467
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.10 E-value=70 Score=20.04 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLES 49 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 49 (395)
..+..-|.---..|++++|+.+|.++++.+..
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 33445566666789999999999999998865
No 468
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.43 E-value=3.3e+02 Score=27.01 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCch--hHHHHHHHHHHHHHHH----h
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA--KKAVEIYHRVITILEL----N 92 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~----~ 92 (395)
-+..|+..|...|++++|++.+.+..+-.. ..+......+-.+-..+...+.. +-..++-.-.+..... +
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 467899999999999999999988776321 01112222222233333333333 2222222221111000 0
Q ss_pred cCCCChhhhhh-HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH--------CCCHHHHH
Q 016114 93 RGTESADLVLP-LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA--------NGNAEEAV 163 (395)
Q Consensus 93 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~ 163 (395)
+..+++..... -.....-|......+-++.+++.++...+.. .+. .+..++..|.+ .++-+++.
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~----~~~---lht~ll~ly~e~v~~~~~~~~kg~e~~ 654 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT----STL---LHTVLLKLYLEKVLEQASTDGKGEEAP 654 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc----chH---HHHHHHHHHHHHHhhccCchhccccch
Confidence 00001101111 1111223456667778888888887764321 111 12222222221 22334555
Q ss_pred HH--HHHHHHHHHhcccCCCCch----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 164 EL--YKKALRVIKDSNYMSLDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 164 ~~--~~~a~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
+. .++............+... .....+...+.++.+.|+.++|+..+-..+.
T Consensus 655 E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 655 ETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 55 4444444433322222211 1134556778888889999999888766543
No 469
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.21 E-value=1.2e+02 Score=25.98 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
.....++......+.+...+....+++..... .......++..+-.+....++|.-+..++..-+.-..+..+.
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~------~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h 176 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQP------SNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPH 176 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHhcc------CccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCC
Confidence 34566777777888888888888888876543 222344555666667777788877776665433222222233
Q ss_pred CChhHHH-HHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 224 EHPSFVT-HLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 224 ~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.+|.... .++.=|.++...++++.|..+|..++.
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 3444333 334456778899999999999988765
No 470
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=42.60 E-value=2.5e+02 Score=25.11 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=48.4
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 016114 239 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC 318 (395)
Q Consensus 239 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 318 (395)
|...|++..|...|+-.+.. .++........-..+...++-+.|..+|+.++...... .....+..
T Consensus 442 ~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~------q~k~iy~k 507 (660)
T COG5107 442 YYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT------QLKRIYDK 507 (660)
T ss_pred HHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh------hhhHHHHH
Confidence 45667888888888776652 22222222233345667788888888888877655332 22334444
Q ss_pred HHHHHHHcCCchhHHHHHHHH
Q 016114 319 LVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 319 l~~~~~~~~~~~~~A~~~~~~ 339 (395)
+-..-..-|+.. .+..+-++
T Consensus 508 mi~YEs~~G~lN-~v~sLe~r 527 (660)
T COG5107 508 MIEYESMVGSLN-NVYSLEER 527 (660)
T ss_pred HHHHHHhhcchH-HHHhHHHH
Confidence 444455556554 44443333
No 471
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=42.42 E-value=1.2e+02 Score=26.38 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHHHHH
Q 016114 248 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-----KEAEKLVLEALYIREIA 304 (395)
Q Consensus 248 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~al~~~~~~ 304 (395)
|..+..+|+...++....+.|. +|..+|.++...|+. .+-..+|++|-.+..+.
T Consensus 330 a~~l~~~Al~yL~kA~d~ddPe---tWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQDEDDPE---TWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp HHHHHHHHHHHHHHHHHS--TT---HHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCChh---HHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 3444444444444433345554 445666666665542 22345566665555443
No 472
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.70 E-value=87 Score=19.57 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=25.8
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHhcc-CCCCHHHHHHH
Q 016114 320 VSIQTRLGEDDTKLLELLKRVLRIQEREF-GSESEEVMLTL 359 (395)
Q Consensus 320 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~ 359 (395)
|.-.-..|+++ +|..+|..+++.+...+ ...+|.....+
T Consensus 13 Av~~D~~g~y~-eA~~lY~~ale~~~~~~k~e~~~~~k~~l 52 (75)
T cd02684 13 AVKKDQRGDAA-AALSLYCSALQYFVPALHYETDAQRKEAL 52 (75)
T ss_pred HHHHHHhccHH-HHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 33445568888 99999999998877654 33445544443
No 473
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.54 E-value=2.4e+02 Score=24.62 Aligned_cols=69 Identities=6% Similarity=0.009 Sum_probs=45.2
Q ss_pred CcHHHHHHH--HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHH--HhhCchhHHHHHHH
Q 016114 12 DEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL--GSIGRAKKAVEIYH 83 (395)
Q Consensus 12 ~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~ 83 (395)
.+|...... ...+..++..++|..|...|.++.... ..+........+..++.+| +..-++++|.+.++
T Consensus 123 ~nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 123 SDPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345443333 345667889999999999999987642 1222334445555555554 56678889999888
No 474
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=41.28 E-value=1.7e+02 Score=24.61 Aligned_cols=80 Identities=9% Similarity=-0.003 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh-HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS-LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
|...+..-...|-+.+--..|.+++.. +|..+..|.. .+.-+...++++.+...+.+++.+ .++.|
T Consensus 110 w~~y~~Y~~k~k~y~~~~nI~~~~l~k--------hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~-----N~~~p 176 (435)
T COG5191 110 WSQYAAYVIKKKMYGEMKNIFAECLTK--------HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM-----NSRSP 176 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc-----CCCCc
Confidence 333444444555666666666666653 6666665554 455677889999999999999987 45667
Q ss_pred hHHHHHHHHHHHHH
Q 016114 141 RVGMAMCSLAHAKC 154 (395)
Q Consensus 141 ~~~~~~~~la~~~~ 154 (395)
.....+..+-..|.
T Consensus 177 ~iw~eyfr~El~yi 190 (435)
T COG5191 177 RIWIEYFRMELMYI 190 (435)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666655544443
No 475
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=40.81 E-value=1.5e+02 Score=22.07 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHH
Q 016114 115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 194 (395)
Q Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la 194 (395)
++-+-|...++..+... +..-.-.+....-..-...|.+.+|...+.+.++.- .......+|..++
T Consensus 71 ~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk--------~YSeistsYaRi~ 136 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK--------EYSEISTSYARIN 136 (220)
T ss_pred CcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh--------hHHHHHHHHHHHH
Confidence 44555666666544321 111122233444455677899999999999988753 3344455666777
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 195 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.+.....+-.--+.--++..+.......+..|.++.+-...+..-.+.|...+|+..++..+.
T Consensus 137 wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 137 WCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 766665543222222223333333334456677777666667777788999999999987765
No 476
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.42 E-value=3.8e+02 Score=26.60 Aligned_cols=95 Identities=16% Similarity=-0.030 Sum_probs=50.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh--------hcHHHHHHH--HHHHHHHHHHhhCCC
Q 016114 197 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--------KNFVEAERL--LRICLDIMTKTVGPD 266 (395)
Q Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~--~~~a~~~~~~~~~~~ 266 (395)
|......+-++.+++.++...+.. .+ .....++..|... ++-+++.+. .++... ..+.....
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~----~~---~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~-~l~~s~~Y 672 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLT----ST---LLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD-FLESSDLY 672 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhcccc----ch---HHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH-Hhhhhccc
Confidence 445667777888888887654321 11 1222233333322 223344444 222222 22221112
Q ss_pred Ccc-------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 267 DQS-------ISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 267 ~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
+|. ....+...+.++.+.|+.++|+..+-..+.
T Consensus 673 ~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 673 DPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred CcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 222 234566778888899999999988866554
No 477
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.25 E-value=90 Score=19.32 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114 318 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 349 (395)
Q Consensus 318 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 349 (395)
.-|.-.-..|+++ +|+.+|..+++.+.....
T Consensus 11 ~~Av~~D~~g~~~-~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 11 KQAVKEDEDGNYE-EALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHHHHHHHhc
Confidence 3444455668899 999999999988877553
No 478
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=39.68 E-value=1.6e+02 Score=25.60 Aligned_cols=55 Identities=9% Similarity=0.203 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcCcChH----HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 36 SMLVYQRVINVLESRYGKTSI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 36 A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
|..+.++|++..++....+.| .++.++..+|+++-.. -.+=..+|.+|-.+..+.
T Consensus 330 a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~e--S~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNE--SKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSH--HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccc--hHHHHHHHHHHHHHHHHH
Confidence 455566666655554333444 3445555555544221 122345555555555443
No 479
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=38.78 E-value=2.7e+02 Score=24.33 Aligned_cols=149 Identities=10% Similarity=-0.009 Sum_probs=89.2
Q ss_pred hcHHHHHHHHHHHHHHHHHhhC-----CCCcchHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHcCCCChHH-
Q 016114 243 KNFVEAERLLRICLDIMTKTVG-----PDDQSISFPMLHLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSLPV- 312 (395)
Q Consensus 243 ~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~- 312 (395)
.++++|..+|..+.....+... +...+...+....+.+|... ++.+.-..+.++-+++.+.....-+|..
T Consensus 138 ~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y 217 (371)
T PF12309_consen 138 LDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYY 217 (371)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 4688888888887766554421 11123344455555555443 6777788888888877776654443432
Q ss_pred ----HHHHHHHHHHHH-------HcCC-------------------chhHHHHHHHHHHHHHHhccCCC---------CH
Q 016114 313 ----GEALDCLVSIQT-------RLGE-------------------DDTKLLELLKRVLRIQEREFGSE---------SE 353 (395)
Q Consensus 313 ----~~~~~~l~~~~~-------~~~~-------------------~~~~A~~~~~~al~~~~~~~~~~---------~~ 353 (395)
...++.+|.+|. ...+ .-..|+.+|+.-++.+...-+.. ..
T Consensus 218 ~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~ 297 (371)
T PF12309_consen 218 LNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELR 297 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHH
Confidence 122333444432 2222 00257777777777765321000 12
Q ss_pred HHHHHHHHHHHHHHHh---------cchhhhchhhHHHHHHHHHHHh
Q 016114 354 EVMLTLKKVVSYLDKL---------GRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 354 ~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
....+++.+|++|.+. +....++..|+.++...+++.+
T Consensus 298 ~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 298 PYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 3467888999998776 5577888888888888877765
No 480
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.53 E-value=2e+02 Score=25.24 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 189 MRIDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
+..++|.++-..+++++|+.+|++++.+..+
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999998765
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=38.32 E-value=2.7e+02 Score=24.31 Aligned_cols=59 Identities=15% Similarity=0.013 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHH--HcCChHHHHHHHH
Q 016114 148 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH--IVGRGQEGRELLE 211 (395)
Q Consensus 148 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~ 211 (395)
..+...++.++|..|...|+++.... .++........+..++..|. ..-++++|.+.++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~-----l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRL-----LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc-----cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 35557889999999999999988642 22223333444555655554 4567889999988
No 482
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.14 E-value=3.1e+02 Score=24.92 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHcCCCC
Q 016114 231 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIREIAFGKDS 309 (395)
Q Consensus 231 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 309 (395)
.|.+......+.+.+.+-...|.+++. .||..+..|..-|...+..+. .+.|..++.++++.. |+.
T Consensus 107 lW~~yi~f~kk~~~~~~v~ki~~~~l~--------~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-----pds 173 (568)
T KOG2396|consen 107 LWLSYIAFCKKKKTYGEVKKIFAAMLA--------KHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-----PDS 173 (568)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHH--------hCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-----CCC
Confidence 344444444445557777777777776 356666666666666666555 778888888887743 566
Q ss_pred hHHHHHHHH
Q 016114 310 LPVGEALDC 318 (395)
Q Consensus 310 ~~~~~~~~~ 318 (395)
|.....++.
T Consensus 174 p~Lw~eyfr 182 (568)
T KOG2396|consen 174 PKLWKEYFR 182 (568)
T ss_pred hHHHHHHHH
Confidence 655444443
No 483
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=37.73 E-value=1.6e+02 Score=21.56 Aligned_cols=34 Identities=12% Similarity=-0.126 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhc-chhhhchhhHHHHHHHHHHHhh
Q 016114 359 LKKVVSYLDKLG-RKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 359 ~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
-..+|..+...| +.++|..+|-+|+.++++-.+.
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 346788888888 8888998888888887765544
No 484
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.65 E-value=3.7e+02 Score=25.98 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHH---HHHHHHHHHHHHc---CChHHHHHHHHHHHH
Q 016114 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME---NMRIDLAELLHIV---GRGQEGRELLEECLL 215 (395)
Q Consensus 142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~---g~~~~A~~~~~~al~ 215 (395)
...+..++-..|....+|+.-+++.+..-.+- +...+. .+.+..+.++.+. |+-++|+...-.+++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP--------~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve 271 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIP--------DTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE 271 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCc--------chhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHH
Confidence 45566777778888889987777666544431 111111 1111223333333 555666665544444
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHH---------hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC
Q 016114 216 ITEKYKGKEHPSFVTHLLNLAASYS---------RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 286 (395)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~la~~~~---------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 286 (395)
+. |+-.|+ .+...|++|. ..+..+.|+.+|+++.+. .|. ..+-.+++.++...|+
T Consensus 272 ---~e-g~vapD---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--------eP~-~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 272 ---KE-GPVAPD---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--------EPL-EYSGINLATLLRAAGE 335 (1226)
T ss_pred ---hc-CCCCCc---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--------Cch-hhccccHHHHHHHhhh
Confidence 22 222232 2333344443 446677888888888773 121 1222466666666664
Q ss_pred -hHHHHHH
Q 016114 287 -DKEAEKL 293 (395)
Q Consensus 287 -~~~A~~~ 293 (395)
++...++
T Consensus 336 ~Fens~El 343 (1226)
T KOG4279|consen 336 HFENSLEL 343 (1226)
T ss_pred hccchHHH
Confidence 3333333
No 485
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=37.15 E-value=1.6e+02 Score=21.20 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=32.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 240 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 240 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
..+|+-++-.+.+..... +....+..+..+|..|.+.|+..+|.+++.+|-+
T Consensus 97 v~~~kkDqLdki~~~l~k--------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKK--------NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhh--------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 345555554444444332 2233456778999999999999999999998865
No 486
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=37.13 E-value=10 Score=19.02 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=14.8
Q ss_pred chhhhchhhHHHHHHHHHHHhhh
Q 016114 371 RKEEKFPLKKRLSNLRMKYKQKV 393 (395)
Q Consensus 371 ~~~~A~~~~~~a~~~~~~~~~~~ 393 (395)
.++.|...|++.+...+..+.-+
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH
Confidence 45677777777777665554443
No 487
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.63 E-value=56 Score=22.25 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVIN 45 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 45 (395)
-+..++..|...|.+++|++.+.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 357789999999999999999887655
No 488
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=36.53 E-value=4.2e+02 Score=25.90 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
...+..|-.+....|++++-...-.++.++. +..|....-|..--......++-.++...|++++.-+.... .
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~--i 185 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVP--I 185 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccch--H
Confidence 3445566677778888877655555544443 22333322222111122233777788888888875432110 1
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
....+......+..+...++++.-...|.+++........ ........+......|...-..++-+.++...+.
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~ 259 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK 259 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 1122333333444556678888999999999876543322 1223445556666666655555666666666554
No 489
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=36.30 E-value=40 Score=23.53 Aligned_cols=33 Identities=12% Similarity=-0.110 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114 359 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 359 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
-..+|..+...|++++|..+|-+|+.++++-.+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 345677778888888888888888877655443
No 490
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=35.45 E-value=1.4e+02 Score=25.45 Aligned_cols=103 Identities=17% Similarity=0.029 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC------C-----ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT------E-----SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
....+.-.+..++++.|..-+.+++......... + .........+++.+-...+.+..|......++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~- 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR- 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-
Confidence 3345667888999999999999988776531110 1 111223455677777788888887776665554
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 131 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
..+....+++..+..+....++++|.+.+..+...
T Consensus 304 -------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 304 -------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred -------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 34556678899999999999999999999988763
No 491
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.03 E-value=2.9e+02 Score=23.62 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=66.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHH
Q 016114 196 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 275 (395)
Q Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (395)
+....++.++|++++++.++.......+ .........+|.++...|+..++.+.+...-.......+-. +.+-..++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHH
Confidence 3445568999999999988876654322 24556677889999999999999999988877666553332 32334455
Q ss_pred HHHH-HHHhcCChHHHHHHHHHH
Q 016114 276 HLGI-TLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 276 ~la~-~~~~~g~~~~A~~~~~~a 297 (395)
.++. .|...|++.......-+.
T Consensus 161 ~lssqYyk~~~d~a~yYr~~L~Y 183 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRHALLY 183 (380)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 5554 445578877654444333
No 492
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=34.65 E-value=2.3e+02 Score=22.47 Aligned_cols=55 Identities=13% Similarity=-0.102 Sum_probs=37.7
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 238 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
-+.+.+...+|+...+.-++ ..|........+-.++.-.|+|++|..-++-+-.+
T Consensus 10 eLL~~~sL~dai~~a~~qVk--------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVK--------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHhccHHHHHHHHHHHHh--------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 34566777888777665544 24555555666778888899999998877665443
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.43 E-value=1.4e+02 Score=19.94 Aligned_cols=34 Identities=9% Similarity=-0.095 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
-.+..||.+|...|+.+.|.+-|+.--.+.++.+
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 4567899999999999999999987766665543
No 494
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=34.35 E-value=1.2e+02 Score=19.00 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 50 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 50 (395)
.+..+...|.-.-..|+|++|..+|..+++.+...
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34445666777778899999999999999987664
No 495
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=33.60 E-value=3.2e+02 Score=23.73 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCCh-----hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA-----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
+.+-.+|...++++-+...++-... ...++.+ ......+.+|.+|....++.+|...+.+|...+..
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~----vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKE----VSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhccc----ccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 3445678889998887766653322 1222333 34456788999999999999999999999877654
No 496
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.35 E-value=2e+02 Score=22.07 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
...+.+++.++...|+.++|.....++...+
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567888999999999999999999888766
No 497
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.20 E-value=1.1e+02 Score=18.26 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=33.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHH--HHHHHHHHHHHcCChHHHHHH
Q 016114 149 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN--MRIDLAELLHIVGRGQEGREL 209 (395)
Q Consensus 149 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~ 209 (395)
-+..+...|+|=+|-+.++..-... .++...... +....|....+.|+...|..+
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~------~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAA------PGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-------CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHC------CcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3556778899999999998876421 112222233 333445566778888887765
No 498
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.08 E-value=2.9e+02 Score=26.65 Aligned_cols=122 Identities=11% Similarity=-0.018 Sum_probs=63.2
Q ss_pred hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH---HHHHHHHHHH---HCCCHHHHHHHHHHHHHH
Q 016114 99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM---AMCSLAHAKC---ANGNAEEAVELYKKALRV 172 (395)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~---~~g~~~~A~~~~~~a~~~ 172 (395)
..+.+..++-..|....+|+.-+++.+..-.+ ++..+++. ..+..+..+- .-|+-++|+...-.+++
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i------P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve- 271 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI------PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE- 271 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhC------cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHH-
Confidence 34556677778888888888777766654433 11111111 1111222222 34666777766655555
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELL---------HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 243 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 243 (395)
+. ++..+. ++..-|++| ...+..+.|+++|++|.+.- | ...+-.|++.++...|
T Consensus 272 --~e---g~vapD---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve--------P-~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 272 --KE---GPVAPD---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE--------P-LEYSGINLATLLRAAG 334 (1226)
T ss_pred --hc---CCCCCc---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC--------c-hhhccccHHHHHHHhh
Confidence 22 222221 112234443 33455677888888887642 2 1223346777776666
Q ss_pred c
Q 016114 244 N 244 (395)
Q Consensus 244 ~ 244 (395)
+
T Consensus 335 ~ 335 (1226)
T KOG4279|consen 335 E 335 (1226)
T ss_pred h
Confidence 4
No 499
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=31.95 E-value=3.2e+02 Score=24.16 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114 232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 232 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 303 (395)
+..|-+.+.-.|++....+ .+++..+..-+..|....+ +..|-.|...+++.+|+..|-..+-..++
T Consensus 238 L~GLlR~H~lLgDhQat~q----~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niLlyIqr 304 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQ----ILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNILLYIQR 304 (525)
T ss_pred HHHHHHHHHHhhhhHhhhh----hhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777888554332 2333222221223333333 78899999999999999999888765443
No 500
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=31.56 E-value=1e+02 Score=26.87 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
+..|-+.+.-.|++.. -.+.+++..+..-...|. +.+-+..|..|..+++|.+|++.|...+-..++
T Consensus 238 L~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~-c~VTY~VGFayLmmrryadai~~F~niLlyIqr 304 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPM-CRVTYQVGFAYLMMRRYADAIRVFLNILLYIQR 304 (525)
T ss_pred HHHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccc-eeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666788443 222333322211112222 233378999999999999999999998876554
Done!