Query 016114
Match_columns 395
No_of_seqs 1188 out of 1843
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 08:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf4_A G-protein-signaling mod 100.0 9.1E-34 3.1E-38 244.9 39.4 349 16-385 8-377 (406)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-34 5.7E-39 247.9 29.4 310 14-390 64-373 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-33 6.5E-38 241.3 27.5 309 13-388 29-337 (388)
4 4a1s_A PINS, partner of inscut 100.0 2.5E-31 8.6E-36 230.0 38.2 314 14-346 45-375 (411)
5 4a1s_A PINS, partner of inscut 100.0 3.4E-31 1.2E-35 229.2 37.7 317 56-391 45-378 (411)
6 3sf4_A G-protein-signaling mod 100.0 5.4E-31 1.9E-35 227.5 38.0 314 58-390 8-341 (406)
7 3ro2_A PINS homolog, G-protein 100.0 1E-30 3.5E-35 219.9 37.7 313 59-390 5-337 (338)
8 3ro2_A PINS homolog, G-protein 100.0 2E-30 6.8E-35 218.1 38.3 312 16-346 4-335 (338)
9 4g1t_A Interferon-induced prot 100.0 1.6E-32 5.3E-37 241.9 24.6 350 12-394 46-468 (472)
10 2y4t_A DNAJ homolog subfamily 100.0 4E-31 1.4E-35 231.5 31.6 323 9-389 18-362 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 1.2E-30 4E-35 221.5 32.7 313 17-390 3-340 (359)
12 3ulq_A Response regulator aspa 100.0 1.4E-28 4.9E-33 210.4 40.1 352 14-390 9-373 (383)
13 2xpi_A Anaphase-promoting comp 100.0 2.8E-29 9.7E-34 227.7 35.0 324 14-390 197-584 (597)
14 3fp2_A TPR repeat-containing p 100.0 1.7E-29 5.9E-34 226.2 30.6 326 13-392 55-498 (537)
15 3fp2_A TPR repeat-containing p 100.0 3.2E-29 1.1E-33 224.5 29.7 324 13-390 21-462 (537)
16 3ulq_A Response regulator aspa 100.0 1E-27 3.6E-32 205.1 37.0 272 60-350 104-375 (383)
17 3nf1_A KLC 1, kinesin light ch 100.0 1.3E-28 4.5E-33 204.7 30.2 287 5-301 15-308 (311)
18 3nf1_A KLC 1, kinesin light ch 100.0 2.3E-28 7.8E-33 203.2 31.1 285 93-388 19-310 (311)
19 1fch_A Peroxisomal targeting s 100.0 1E-29 3.5E-34 216.6 22.3 314 24-389 32-363 (368)
20 3q15_A PSP28, response regulat 100.0 2.8E-27 9.6E-32 201.9 37.3 339 28-392 23-372 (378)
21 4eqf_A PEX5-related protein; a 100.0 1.6E-29 5.5E-34 215.1 22.8 297 13-350 61-363 (365)
22 3hym_B Cell division cycle pro 100.0 3E-29 1E-33 210.4 22.8 298 17-373 22-322 (330)
23 2gw1_A Mitochondrial precursor 100.0 4.1E-28 1.4E-32 216.1 31.4 325 14-389 3-405 (514)
24 2gw1_A Mitochondrial precursor 100.0 1.1E-28 3.7E-33 219.9 25.7 288 59-392 186-485 (514)
25 4eqf_A PEX5-related protein; a 100.0 2.3E-28 7.9E-33 208.0 26.4 289 58-385 64-356 (365)
26 1fch_A Peroxisomal targeting s 100.0 2.1E-28 7.3E-33 208.4 22.9 286 17-349 64-365 (368)
27 2y4t_A DNAJ homolog subfamily 100.0 8.2E-28 2.8E-32 210.5 26.1 295 13-365 56-372 (450)
28 3q15_A PSP28, response regulat 100.0 1.5E-26 5.2E-31 197.4 33.1 270 58-347 100-369 (378)
29 3edt_B KLC 2, kinesin light ch 100.0 2.6E-27 9E-32 194.0 27.2 270 112-386 12-282 (283)
30 3ieg_A DNAJ homolog subfamily 100.0 5.6E-27 1.9E-31 198.9 30.0 298 13-371 33-355 (359)
31 3hym_B Cell division cycle pro 100.0 9.5E-28 3.2E-32 201.3 24.0 279 60-389 23-303 (330)
32 2xpi_A Anaphase-promoting comp 100.0 5.6E-27 1.9E-31 212.7 29.4 293 14-367 302-595 (597)
33 3edt_B KLC 2, kinesin light ch 100.0 1.8E-26 6.1E-31 189.0 28.2 270 69-343 11-281 (283)
34 4g1t_A Interferon-induced prot 100.0 2.2E-27 7.4E-32 209.1 23.6 313 29-386 23-364 (472)
35 1hz4_A MALT regulatory protein 100.0 9.1E-25 3.1E-29 186.3 37.5 312 15-346 12-325 (373)
36 3cv0_A Peroxisome targeting si 100.0 7E-27 2.4E-31 195.7 22.3 288 11-349 14-321 (327)
37 3cv0_A Peroxisome targeting si 100.0 2.6E-26 8.8E-31 192.2 25.3 284 58-389 20-319 (327)
38 1hz4_A MALT regulatory protein 99.9 3.5E-24 1.2E-28 182.6 34.3 313 57-389 12-326 (373)
39 3uq3_A Heat shock protein STI1 99.9 4.5E-24 1.5E-28 172.3 29.7 254 57-365 3-256 (258)
40 3uq3_A Heat shock protein STI1 99.9 5.8E-24 2E-28 171.6 29.7 254 14-321 2-255 (258)
41 3u4t_A TPR repeat-containing p 99.9 1.4E-25 4.8E-30 182.7 20.2 251 102-392 4-257 (272)
42 2h6f_A Protein farnesyltransfe 99.9 8.2E-25 2.8E-29 184.3 23.4 256 12-326 92-366 (382)
43 3u4t_A TPR repeat-containing p 99.9 7.2E-25 2.5E-29 178.5 21.2 261 60-368 4-267 (272)
44 2h6f_A Protein farnesyltransfe 99.9 2.5E-24 8.5E-29 181.4 22.9 255 55-369 93-366 (382)
45 2pl2_A Hypothetical conserved 99.9 1E-24 3.6E-29 170.6 17.8 200 14-256 2-212 (217)
46 2xm6_A Protein corresponding t 99.9 1.1E-22 3.8E-27 179.5 32.4 296 17-386 75-433 (490)
47 2pl2_A Hypothetical conserved 99.9 4.3E-24 1.5E-28 167.0 19.1 197 59-298 5-212 (217)
48 2xm6_A Protein corresponding t 99.9 4E-22 1.4E-26 175.9 32.5 290 16-385 38-396 (490)
49 3mkr_A Coatomer subunit epsilo 99.9 8.5E-22 2.9E-26 160.8 27.2 280 26-379 8-288 (291)
50 1ouv_A Conserved hypothetical 99.9 2.2E-21 7.4E-26 157.8 26.3 225 14-300 3-251 (273)
51 1ouv_A Conserved hypothetical 99.9 3.6E-21 1.2E-25 156.6 27.1 229 98-389 3-255 (273)
52 2ifu_A Gamma-SNAP; membrane fu 99.9 4.1E-21 1.4E-25 158.6 27.3 249 28-292 2-253 (307)
53 3mkr_A Coatomer subunit epsilo 99.9 4.4E-22 1.5E-26 162.5 20.3 261 67-392 7-271 (291)
54 1qqe_A Vesicular transport pro 99.9 3.2E-21 1.1E-25 158.0 24.2 222 66-299 44-268 (292)
55 1qqe_A Vesicular transport pro 99.9 1.4E-21 4.6E-26 160.3 21.2 226 150-389 44-273 (292)
56 2ifu_A Gamma-SNAP; membrane fu 99.9 4.4E-21 1.5E-25 158.4 23.9 246 114-376 4-252 (307)
57 2q7f_A YRRB protein; TPR, prot 99.9 1.7E-21 5.9E-26 155.6 18.3 220 15-284 21-240 (243)
58 2ho1_A Type 4 fimbrial biogene 99.9 5.8E-20 2E-24 147.6 27.2 205 57-301 35-239 (252)
59 2q7f_A YRRB protein; TPR, prot 99.9 1.9E-21 6.6E-26 155.3 17.5 203 57-301 21-223 (243)
60 4abn_A Tetratricopeptide repea 99.9 5.9E-21 2E-25 167.0 21.3 222 35-297 79-318 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.5E-20 5.2E-25 153.1 22.3 258 66-379 12-269 (275)
62 3vtx_A MAMA; tetratricopeptide 99.9 7.1E-21 2.4E-25 145.1 18.6 171 187-390 5-175 (184)
63 3qky_A Outer membrane assembly 99.9 3.6E-20 1.2E-24 149.5 23.6 213 139-379 11-255 (261)
64 2vq2_A PILW, putative fimbrial 99.9 1.4E-19 4.8E-24 142.6 26.5 206 55-300 4-211 (225)
65 2ho1_A Type 4 fimbrial biogene 99.9 5.3E-20 1.8E-24 147.8 24.0 207 12-258 31-238 (252)
66 4gyw_A UDP-N-acetylglucosamine 99.9 5.7E-21 1.9E-25 173.3 20.3 176 11-220 3-178 (723)
67 3vtx_A MAMA; tetratricopeptide 99.9 1.6E-20 5.6E-25 143.0 19.8 167 16-216 4-170 (184)
68 3qky_A Outer membrane assembly 99.9 2.5E-20 8.4E-25 150.5 21.9 210 13-249 11-252 (261)
69 4abn_A Tetratricopeptide repea 99.9 2.6E-20 9E-25 162.9 23.4 218 77-339 79-317 (474)
70 2vq2_A PILW, putative fimbrial 99.9 2.4E-19 8.1E-24 141.3 26.6 207 96-343 3-211 (225)
71 4gyw_A UDP-N-acetylglucosamine 99.9 1.6E-20 5.5E-25 170.3 21.6 175 96-304 4-178 (723)
72 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.9E-20 2E-24 149.6 23.1 233 11-294 37-269 (275)
73 3n71_A Histone lysine methyltr 99.9 1.3E-20 4.3E-25 162.8 19.5 152 234-386 314-465 (490)
74 3n71_A Histone lysine methyltr 99.9 3.7E-20 1.3E-24 159.9 20.0 153 191-344 313-465 (490)
75 4i17_A Hypothetical protein; T 99.8 1.7E-18 5.8E-23 136.7 22.5 184 60-281 8-224 (228)
76 3e4b_A ALGK; tetratricopeptide 99.8 3.6E-19 1.2E-23 154.7 19.8 224 101-385 141-387 (452)
77 3e4b_A ALGK; tetratricopeptide 99.8 2.3E-19 7.8E-24 156.0 16.9 286 21-384 7-350 (452)
78 2qfc_A PLCR protein; TPR, HTH, 99.8 3.9E-18 1.3E-22 139.9 22.4 197 14-220 72-270 (293)
79 3u3w_A Transcriptional activat 99.8 6.5E-18 2.2E-22 138.6 23.0 199 14-221 72-271 (293)
80 3gw4_A Uncharacterized protein 99.8 9.1E-18 3.1E-22 130.0 22.5 194 112-322 3-196 (203)
81 3gw4_A Uncharacterized protein 99.8 8.4E-18 2.9E-22 130.2 22.1 193 70-279 3-195 (203)
82 4i17_A Hypothetical protein; T 99.8 5.8E-18 2E-22 133.6 21.1 171 101-301 7-210 (228)
83 2ooe_A Cleavage stimulation fa 99.8 2E-17 6.9E-22 147.4 26.3 207 144-388 273-495 (530)
84 2qfc_A PLCR protein; TPR, HTH, 99.8 1.7E-17 5.9E-22 136.1 23.1 197 140-347 72-270 (293)
85 3u3w_A Transcriptional activat 99.8 2E-17 7E-22 135.6 23.2 194 57-262 73-270 (293)
86 2ooe_A Cleavage stimulation fa 99.8 3.7E-17 1.3E-21 145.7 25.0 318 13-385 9-454 (530)
87 4b4t_Q 26S proteasome regulato 99.8 1.5E-16 5.3E-21 138.3 27.8 242 62-312 7-257 (434)
88 2ond_A Cleavage stimulation fa 99.8 7.4E-17 2.5E-21 133.3 23.8 223 34-301 33-271 (308)
89 2ond_A Cleavage stimulation fa 99.8 9.5E-17 3.3E-21 132.6 24.5 225 76-346 33-273 (308)
90 4b4t_Q 26S proteasome regulato 99.8 1.2E-16 4.1E-21 139.0 25.7 241 103-353 6-255 (434)
91 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.4E-16 4.7E-21 125.2 21.9 177 17-215 4-212 (225)
92 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.2E-16 1.1E-20 123.1 24.0 177 59-257 4-212 (225)
93 3qww_A SET and MYND domain-con 99.8 1.1E-17 3.9E-22 142.1 16.2 123 198-320 309-431 (433)
94 3qww_A SET and MYND domain-con 99.8 1.2E-17 4.3E-22 141.9 15.6 122 241-363 310-431 (433)
95 3as5_A MAMA; tetratricopeptide 99.8 4.9E-17 1.7E-21 123.8 17.2 172 13-218 4-175 (186)
96 3ro3_A PINS homolog, G-protein 99.8 3.7E-16 1.3E-20 116.2 20.7 159 11-175 3-161 (164)
97 3ro3_A PINS homolog, G-protein 99.8 5.4E-16 1.8E-20 115.3 21.4 158 54-219 4-161 (164)
98 3qwp_A SET and MYND domain-con 99.7 3.5E-17 1.2E-21 139.6 16.2 133 194-326 294-426 (429)
99 3as5_A MAMA; tetratricopeptide 99.7 5.4E-17 1.8E-21 123.6 15.7 174 184-390 5-178 (186)
100 3qwp_A SET and MYND domain-con 99.7 3.6E-17 1.2E-21 139.6 15.9 134 236-370 294-427 (429)
101 3urz_A Uncharacterized protein 99.7 3.8E-16 1.3E-20 121.0 20.4 165 17-216 4-186 (208)
102 4ga2_A E3 SUMO-protein ligase 99.7 2E-17 6.7E-22 120.9 12.3 147 22-202 2-149 (150)
103 3urz_A Uncharacterized protein 99.7 5.4E-16 1.9E-20 120.1 20.6 166 101-301 4-187 (208)
104 2pzi_A Probable serine/threoni 99.7 3.4E-17 1.2E-21 149.5 15.8 200 70-304 402-602 (681)
105 4ga2_A E3 SUMO-protein ligase 99.7 2.4E-17 8.2E-22 120.4 11.3 147 64-244 2-149 (150)
106 2pzi_A Probable serine/threoni 99.7 1.9E-17 6.6E-22 151.1 13.3 200 28-262 402-602 (681)
107 1xi4_A Clathrin heavy chain; a 99.7 1.4E-15 4.7E-20 141.9 24.7 193 23-297 1055-1247(1630)
108 4gco_A Protein STI-1; structur 99.7 7.5E-16 2.6E-20 108.6 14.3 119 10-152 6-124 (126)
109 1xi4_A Clathrin heavy chain; a 99.7 1.1E-13 3.8E-18 129.4 27.9 253 60-381 1106-1380(1630)
110 4gco_A Protein STI-1; structur 99.7 5.6E-15 1.9E-19 104.1 14.6 102 55-172 9-110 (126)
111 3rjv_A Putative SEL1 repeat pr 99.6 2.9E-14 9.8E-19 110.7 19.4 177 76-300 3-197 (212)
112 2r5s_A Uncharacterized protein 99.6 5.5E-15 1.9E-19 111.3 14.2 165 101-300 6-173 (176)
113 4f3v_A ESX-1 secretion system 99.6 1.1E-14 3.7E-19 115.0 15.9 208 19-258 9-237 (282)
114 2r5s_A Uncharacterized protein 99.6 1.9E-15 6.5E-20 113.8 11.2 167 17-216 6-173 (176)
115 1b89_A Protein (clathrin heavy 99.6 3.9E-16 1.3E-20 130.3 7.9 261 26-387 12-274 (449)
116 3qou_A Protein YBBN; thioredox 99.6 1.5E-14 5.2E-19 117.9 17.2 169 98-300 114-284 (287)
117 3rjv_A Putative SEL1 repeat pr 99.6 2.6E-14 9E-19 110.9 17.7 177 34-258 3-197 (212)
118 1b89_A Protein (clathrin heavy 99.6 3.5E-16 1.2E-20 130.6 7.5 269 18-381 33-307 (449)
119 4gcn_A Protein STI-1; structur 99.6 4.4E-14 1.5E-18 99.7 16.4 108 98-216 5-112 (127)
120 3gyz_A Chaperone protein IPGC; 99.6 4.7E-15 1.6E-19 107.4 11.4 102 55-172 32-133 (151)
121 3qou_A Protein YBBN; thioredox 99.6 1.6E-14 5.6E-19 117.7 15.6 171 14-216 114-284 (287)
122 3gyz_A Chaperone protein IPGC; 99.6 3.4E-14 1.2E-18 102.9 15.4 109 6-130 25-133 (151)
123 3dra_A Protein farnesyltransfe 99.6 6.9E-13 2.4E-17 107.4 23.9 238 15-299 31-286 (306)
124 4gcn_A Protein STI-1; structur 99.6 5.1E-14 1.7E-18 99.4 15.3 108 56-172 5-112 (127)
125 4f3v_A ESX-1 secretion system 99.6 9.7E-14 3.3E-18 109.6 18.1 209 60-301 8-238 (282)
126 3dra_A Protein farnesyltransfe 99.6 9.9E-13 3.4E-17 106.5 24.4 223 72-342 46-286 (306)
127 2vsy_A XCC0866; transferase, g 99.6 2.1E-14 7.2E-19 129.1 14.6 153 72-258 2-157 (568)
128 2vsy_A XCC0866; transferase, g 99.6 3.5E-14 1.2E-18 127.6 15.5 154 30-217 2-158 (568)
129 1p5q_A FKBP52, FK506-binding p 99.6 3.7E-14 1.3E-18 118.2 12.5 164 71-260 125-296 (336)
130 2fo7_A Synthetic consensus TPR 99.5 4.1E-13 1.4E-17 96.1 15.9 131 18-172 2-132 (136)
131 1p5q_A FKBP52, FK506-binding p 99.5 2.6E-13 8.9E-18 113.1 16.0 147 12-174 142-296 (336)
132 2fo7_A Synthetic consensus TPR 99.5 1.1E-12 3.7E-17 93.8 16.9 131 60-216 2-132 (136)
133 2vgx_A Chaperone SYCD; alterna 99.5 6.7E-13 2.3E-17 96.4 15.7 110 6-131 10-119 (148)
134 2vgx_A Chaperone SYCD; alterna 99.5 3.3E-13 1.1E-17 98.0 13.8 103 55-173 17-119 (148)
135 1a17_A Serine/threonine protei 99.5 2.3E-12 7.7E-17 95.9 18.5 139 57-219 11-149 (166)
136 3upv_A Heat shock protein STI1 99.5 1.3E-12 4.3E-17 92.3 16.2 123 14-154 1-123 (126)
137 1a17_A Serine/threonine protei 99.5 9E-13 3.1E-17 98.1 16.2 140 14-175 10-149 (166)
138 3upv_A Heat shock protein STI1 99.5 1.9E-12 6.4E-17 91.4 16.2 103 57-175 2-104 (126)
139 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.2E-13 1.4E-17 104.4 12.9 138 16-172 5-150 (213)
140 2hr2_A Hypothetical protein; a 99.5 2.5E-12 8.5E-17 91.8 15.4 118 58-176 10-135 (159)
141 2hr2_A Hypothetical protein; a 99.5 3.1E-12 1E-16 91.3 15.5 117 16-133 10-134 (159)
142 1hh8_A P67PHOX, NCF-2, neutrop 99.5 9.3E-13 3.2E-17 102.5 14.1 139 59-216 6-150 (213)
143 2xcb_A PCRH, regulatory protei 99.5 3E-12 1E-16 92.4 15.0 111 6-132 7-117 (142)
144 3rkv_A Putative peptidylprolyl 99.5 2.3E-12 7.8E-17 95.4 14.2 110 13-130 7-126 (162)
145 2fbn_A 70 kDa peptidylprolyl i 99.5 3.7E-13 1.3E-17 103.4 10.2 159 105-291 8-176 (198)
146 2c2l_A CHIP, carboxy terminus 99.5 2.7E-13 9.2E-18 110.0 9.7 194 59-299 4-198 (281)
147 2vyi_A SGTA protein; chaperone 99.5 2.3E-12 7.9E-17 91.5 13.6 125 11-159 6-130 (131)
148 2lni_A Stress-induced-phosphop 99.4 1.4E-12 4.7E-17 93.0 12.3 125 10-158 9-133 (133)
149 2xcb_A PCRH, regulatory protei 99.4 1E-11 3.5E-16 89.6 16.6 104 55-174 14-117 (142)
150 2fbn_A 70 kDa peptidylprolyl i 99.4 2.9E-13 9.9E-18 104.0 8.7 168 191-385 8-186 (198)
151 2vyi_A SGTA protein; chaperone 99.4 1.1E-11 3.6E-16 88.0 15.7 124 54-203 7-130 (131)
152 3sz7_A HSC70 cochaperone (SGT) 99.4 2.6E-12 8.8E-17 95.3 12.5 105 11-131 5-109 (164)
153 2c2l_A CHIP, carboxy terminus 99.4 5E-13 1.7E-17 108.4 9.3 195 16-257 3-198 (281)
154 3dss_A Geranylgeranyl transfer 99.4 6.6E-10 2.3E-14 90.5 27.4 226 70-343 40-304 (331)
155 1wao_1 Serine/threonine protei 99.4 3.3E-13 1.1E-17 117.8 8.2 180 98-303 3-200 (477)
156 2lni_A Stress-induced-phosphop 99.4 8.9E-12 3.1E-16 88.7 14.2 124 181-328 10-133 (133)
157 2e2e_A Formate-dependent nitri 99.4 2.6E-12 8.8E-17 96.7 11.7 122 27-172 20-144 (177)
158 3rkv_A Putative peptidylprolyl 99.4 1.8E-11 6.3E-16 90.5 15.7 130 139-284 7-145 (162)
159 1wao_1 Serine/threonine protei 99.4 1.5E-13 5.1E-18 119.9 4.8 181 13-219 2-200 (477)
160 3sz7_A HSC70 cochaperone (SGT) 99.4 1.1E-11 3.7E-16 91.9 14.1 103 55-173 7-109 (164)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.1E-12 3.7E-17 114.1 9.7 155 71-251 246-407 (457)
162 2e2e_A Formate-dependent nitri 99.4 2E-11 6.9E-16 91.8 14.8 122 111-258 20-144 (177)
163 2xev_A YBGF; tetratricopeptide 99.4 3.4E-11 1.2E-15 85.3 15.2 102 19-130 4-105 (129)
164 3q7a_A Farnesyltransferase alp 99.4 1.5E-10 5.3E-15 94.6 20.9 243 99-383 52-329 (349)
165 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 6.4E-12 2.2E-16 109.3 13.6 143 12-170 263-413 (457)
166 3dss_A Geranylgeranyl transfer 99.4 1.1E-09 3.7E-14 89.3 25.5 223 28-300 40-304 (331)
167 1na0_A Designed protein CTPR3; 99.4 1.9E-11 6.3E-16 85.9 13.6 118 16-157 8-125 (125)
168 2xev_A YBGF; tetratricopeptide 99.4 5.4E-11 1.9E-15 84.2 15.9 102 61-172 4-105 (129)
169 3q7a_A Farnesyltransferase alp 99.3 5.7E-10 1.9E-14 91.3 22.4 243 56-341 51-329 (349)
170 1ihg_A Cyclophilin 40; ppiase 99.3 3.4E-11 1.2E-15 101.4 15.7 135 14-164 220-362 (370)
171 1elr_A TPR2A-domain of HOP; HO 99.3 8.3E-11 2.8E-15 83.3 15.6 107 99-216 2-108 (131)
172 3q49_B STIP1 homology and U bo 99.3 3.5E-11 1.2E-15 86.2 13.6 104 14-133 6-109 (137)
173 3q49_B STIP1 homology and U bo 99.3 7.2E-11 2.5E-15 84.5 14.6 103 57-175 7-109 (137)
174 1na0_A Designed protein CTPR3; 99.3 8.9E-11 3.1E-15 82.4 14.7 117 59-201 9-125 (125)
175 2dba_A Smooth muscle cell asso 99.3 4.2E-11 1.4E-15 87.0 12.7 105 13-130 24-128 (148)
176 1elr_A TPR2A-domain of HOP; HO 99.3 9.9E-11 3.4E-15 82.9 14.3 106 58-172 3-108 (131)
177 1hxi_A PEX5, peroxisome target 99.3 2.2E-11 7.4E-16 84.9 10.5 97 61-173 19-115 (121)
178 1hxi_A PEX5, peroxisome target 99.3 9.2E-12 3.1E-16 86.8 8.4 101 273-390 19-119 (121)
179 3mv2_B Coatomer subunit epsilo 99.3 2.9E-10 9.9E-15 91.1 17.2 255 67-390 21-287 (310)
180 1elw_A TPR1-domain of HOP; HOP 99.3 1.2E-10 4.2E-15 80.7 13.2 113 16-152 3-115 (118)
181 1ihg_A Cyclophilin 40; ppiase 99.3 9.1E-11 3.1E-15 98.8 14.8 134 57-208 221-362 (370)
182 4e6h_A MRNA 3'-END-processing 99.3 1.9E-08 6.5E-13 90.8 30.1 231 119-388 327-573 (679)
183 2if4_A ATFKBP42; FKBP-like, al 99.3 2E-11 6.8E-16 101.7 10.3 145 13-173 175-329 (338)
184 2dba_A Smooth muscle cell asso 99.3 2.5E-10 8.4E-15 82.9 15.0 120 140-282 25-144 (148)
185 1elw_A TPR1-domain of HOP; HOP 99.2 7.4E-10 2.5E-14 76.7 15.4 98 59-172 4-101 (118)
186 2if4_A ATFKBP42; FKBP-like, al 99.2 7.2E-11 2.5E-15 98.4 10.4 143 56-216 176-328 (338)
187 3k9i_A BH0479 protein; putativ 99.2 5.3E-11 1.8E-15 82.6 8.0 90 29-131 2-91 (117)
188 3mv2_B Coatomer subunit epsilo 99.2 7.3E-09 2.5E-13 83.1 20.7 182 101-313 100-290 (310)
189 3k9i_A BH0479 protein; putativ 99.2 1.9E-10 6.6E-15 79.7 9.8 90 199-301 2-91 (117)
190 2kck_A TPR repeat; tetratricop 99.2 2.1E-10 7.2E-15 78.7 9.1 103 98-216 3-106 (112)
191 1dce_A Protein (RAB geranylger 99.1 4.5E-09 1.6E-13 93.4 19.5 177 71-289 40-244 (567)
192 2kck_A TPR repeat; tetratricop 99.1 9.8E-11 3.3E-15 80.4 6.1 98 59-172 6-106 (112)
193 4e6h_A MRNA 3'-END-processing 99.1 1.2E-07 4.1E-12 85.6 27.3 232 77-345 327-572 (679)
194 1zu2_A Mitochondrial import re 99.1 9.6E-10 3.3E-14 78.3 9.1 87 28-130 13-120 (158)
195 1dce_A Protein (RAB geranylger 99.0 1E-08 3.6E-13 91.1 16.7 177 29-247 40-244 (567)
196 1zu2_A Mitochondrial import re 99.0 3E-09 1E-13 75.8 10.3 87 199-301 14-121 (158)
197 1na3_A Designed protein CTPR2; 99.0 5.4E-09 1.8E-13 68.5 10.1 88 12-115 4-91 (91)
198 1na3_A Designed protein CTPR2; 99.0 8.6E-09 2.9E-13 67.5 10.8 86 56-157 6-91 (91)
199 2l6j_A TPR repeat-containing p 98.9 4.9E-10 1.7E-14 76.8 3.5 96 59-167 4-102 (111)
200 2l6j_A TPR repeat-containing p 98.9 2.6E-09 8.7E-14 73.1 7.0 101 271-382 4-104 (111)
201 2kat_A Uncharacterized protein 98.9 3.1E-08 1.1E-12 68.2 11.2 84 76-175 2-85 (115)
202 1klx_A Cysteine rich protein B 98.9 6.6E-08 2.2E-12 68.8 12.6 111 30-172 8-126 (138)
203 3ma5_A Tetratricopeptide repea 98.8 4.9E-08 1.7E-12 65.1 11.0 71 97-175 3-73 (100)
204 2kat_A Uncharacterized protein 98.8 7.3E-08 2.5E-12 66.3 12.0 84 204-303 2-85 (115)
205 1klx_A Cysteine rich protein B 98.8 5.2E-08 1.8E-12 69.3 11.4 110 201-343 9-126 (138)
206 3ma5_A Tetratricopeptide repea 98.8 5.6E-08 1.9E-12 64.8 10.2 70 226-303 4-73 (100)
207 4g26_A Pentatricopeptide repea 98.7 2.8E-06 9.5E-11 74.4 20.2 166 104-299 29-203 (501)
208 4g26_A Pentatricopeptide repea 98.7 1.2E-06 4E-11 76.7 16.9 167 190-385 29-204 (501)
209 3txn_A 26S proteasome regulato 98.7 1.9E-05 6.4E-10 65.8 22.7 212 60-287 20-236 (394)
210 3txn_A 26S proteasome regulato 98.6 6.1E-05 2.1E-09 62.8 25.3 213 17-244 19-235 (394)
211 2kc7_A BFR218_protein; tetratr 98.6 2.9E-07 9.9E-12 61.2 8.0 88 63-174 4-92 (99)
212 2v5f_A Prolyl 4-hydroxylase su 98.5 1.2E-06 4.1E-11 58.7 10.6 82 18-108 6-87 (104)
213 2uy1_A Cleavage stimulation fa 98.5 0.00024 8.3E-09 62.2 27.6 213 118-386 196-414 (493)
214 2kc7_A BFR218_protein; tetratr 98.5 3.1E-07 1.1E-11 61.0 6.9 87 21-131 4-91 (99)
215 2v5f_A Prolyl 4-hydroxylase su 98.5 4.2E-06 1.4E-10 56.0 11.6 70 144-216 6-75 (104)
216 3ly7_A Transcriptional activat 98.5 2E-05 6.8E-10 64.6 17.5 133 21-172 200-339 (372)
217 3bee_A Putative YFRE protein; 98.3 1.7E-05 5.9E-10 51.4 10.6 68 97-172 2-72 (93)
218 3u64_A Protein TP_0956; tetrat 98.2 1.8E-05 6.3E-10 62.1 11.9 100 57-172 150-269 (301)
219 3ffl_A Anaphase-promoting comp 98.2 0.00011 3.8E-09 52.1 14.4 128 144-281 21-165 (167)
220 3ly7_A Transcriptional activat 98.2 3.6E-05 1.2E-09 63.1 13.4 132 64-216 201-339 (372)
221 3bee_A Putative YFRE protein; 98.2 1.4E-05 4.7E-10 51.9 9.0 64 59-130 6-72 (93)
222 3ffl_A Anaphase-promoting comp 98.2 0.0001 3.5E-09 52.3 13.5 109 18-126 21-147 (167)
223 3u64_A Protein TP_0956; tetrat 98.2 0.0011 3.7E-08 52.2 20.3 85 244-344 178-270 (301)
224 1pc2_A Mitochondria fission pr 98.1 9.5E-05 3.3E-09 52.1 12.0 68 227-301 30-101 (152)
225 2uy1_A Cleavage stimulation fa 98.1 0.0046 1.6E-07 54.1 26.0 216 76-345 196-415 (493)
226 1pc2_A Mitochondria fission pr 98.1 0.00034 1.1E-08 49.3 14.3 93 245-358 14-110 (152)
227 4b4t_P 26S proteasome regulato 97.8 0.014 4.7E-07 50.2 22.5 216 115-346 30-250 (445)
228 4b4t_P 26S proteasome regulato 97.7 0.019 6.6E-07 49.4 23.5 218 29-261 28-250 (445)
229 4h7y_A Dual specificity protei 97.4 0.0075 2.6E-07 41.9 12.6 110 9-130 8-123 (161)
230 1nzn_A CGI-135 protein, fissio 97.4 0.00071 2.4E-08 45.8 7.4 76 313-393 35-111 (126)
231 4h7y_A Dual specificity protei 97.3 0.012 4.2E-07 40.9 12.8 101 191-300 17-123 (161)
232 4b4t_R RPN7, 26S proteasome re 96.9 0.019 6.6E-07 49.1 12.8 110 98-216 128-237 (429)
233 4b4t_R RPN7, 26S proteasome re 96.8 0.013 4.4E-07 50.2 11.1 106 188-300 132-237 (429)
234 3o48_A Mitochondria fission 1 96.7 0.0017 5.9E-08 44.1 3.7 74 313-393 40-115 (134)
235 3spa_A Mtrpol, DNA-directed RN 96.5 0.043 1.5E-06 51.5 12.8 105 184-299 124-229 (1134)
236 3spa_A Mtrpol, DNA-directed RN 96.5 0.07 2.4E-06 50.1 13.9 107 225-342 123-229 (1134)
237 1nzn_A CGI-135 protein, fissio 96.4 0.12 4E-06 35.1 16.4 70 269-343 33-103 (126)
238 1y8m_A FIS1; mitochondria, unk 96.4 0.0023 7.8E-08 44.1 3.1 74 312-392 38-113 (144)
239 3mkq_A Coatomer beta'-subunit; 96.3 0.068 2.3E-06 50.2 13.6 76 147-256 633-708 (814)
240 3mkq_A Coatomer beta'-subunit; 96.1 0.15 5.2E-06 47.8 14.7 47 69-128 662-708 (814)
241 2ff4_A Probable regulatory pro 95.8 0.36 1.2E-05 40.7 14.4 109 23-139 121-243 (388)
242 4gns_B Protein CSD3, chitin bi 95.7 0.63 2.1E-05 42.7 16.1 88 74-169 300-397 (754)
243 2ff4_A Probable regulatory pro 95.6 0.35 1.2E-05 40.7 13.7 105 197-309 125-243 (388)
244 4gns_B Protein CSD3, chitin bi 95.5 0.79 2.7E-05 42.0 16.3 88 202-297 300-397 (754)
245 3lpz_A GET4 (YOR164C homolog); 95.3 0.97 3.3E-05 36.7 26.9 213 146-371 58-297 (336)
246 4b4t_S RPN3, 26S proteasome re 95.1 0.36 1.2E-05 41.7 11.9 145 26-173 145-300 (523)
247 4fhn_B Nucleoporin NUP120; pro 94.9 1.8 6.1E-05 42.4 17.8 208 146-369 845-1079(1139)
248 1ya0_A SMG-7 transcript varian 94.5 0.37 1.3E-05 41.9 10.8 63 60-130 153-215 (497)
249 3mkq_B Coatomer subunit alpha; 94.5 0.89 3E-05 33.0 11.0 101 111-255 15-115 (177)
250 1y8m_A FIS1; mitochondria, unk 94.5 0.77 2.6E-05 31.8 12.4 66 58-130 38-106 (144)
251 3o48_A Mitochondria fission 1 94.3 0.79 2.7E-05 31.3 11.7 66 270-343 39-107 (134)
252 3mkq_B Coatomer subunit alpha; 93.7 1.4 4.9E-05 31.9 12.5 101 153-297 15-115 (177)
253 4b4t_S RPN3, 26S proteasome re 93.4 0.28 9.6E-06 42.4 7.8 143 111-257 146-298 (523)
254 3lpz_A GET4 (YOR164C homolog); 93.1 3 0.0001 33.9 30.3 246 27-285 22-296 (336)
255 3kae_A CDC27, possible protein 93.0 1.8 6E-05 31.0 11.9 96 192-300 38-143 (242)
256 4fhn_B Nucleoporin NUP120; pro 92.3 9.1 0.00031 37.6 19.5 105 102-211 843-962 (1139)
257 3kae_A CDC27, possible protein 92.1 2.4 8.1E-05 30.4 12.8 97 63-172 37-143 (242)
258 1ya0_A SMG-7 transcript varian 92.0 0.56 1.9E-05 40.8 7.9 62 102-171 153-214 (497)
259 2wpv_A GET4, UPF0363 protein Y 90.5 5.9 0.0002 32.0 26.0 103 103-211 55-158 (312)
260 4b4t_O 26S proteasome regulato 88.8 9.8 0.00033 32.0 16.0 136 75-217 55-199 (393)
261 2wpv_A GET4, UPF0363 protein Y 88.6 8.5 0.00029 31.0 26.8 182 27-217 23-218 (312)
262 1zbp_A Hypothetical protein VP 88.3 7.1 0.00024 30.5 10.3 123 239-387 7-131 (273)
263 4b4t_O 26S proteasome regulato 85.8 15 0.00051 30.9 17.6 131 205-341 57-196 (393)
264 3efz_A 14-3-3 protein; 14-3-3, 85.5 11 0.00039 29.3 12.1 96 163-258 118-226 (268)
265 3iqu_A 14-3-3 protein sigma; s 84.9 11 0.00038 28.7 20.0 182 62-259 11-206 (236)
266 3efz_A 14-3-3 protein; 14-3-3, 84.5 13 0.00043 29.0 11.9 92 39-130 120-226 (268)
267 2crb_A Nuclear receptor bindin 82.7 5.5 0.00019 24.9 5.8 36 14-49 12-47 (97)
268 3uzd_A 14-3-3 protein gamma; s 82.1 15 0.00053 28.2 22.3 58 203-260 147-205 (248)
269 2o8p_A 14-3-3 domain containin 78.9 19 0.00065 27.3 22.7 181 106-301 11-198 (227)
270 1o9d_A 14-3-3-like protein C; 78.2 22 0.00075 27.7 21.0 184 62-258 11-207 (260)
271 3t5v_B Nuclear mRNA export pro 77.7 10 0.00035 32.5 8.1 100 158-258 141-249 (455)
272 2w2u_A Hypothetical P60 katani 75.8 11 0.00039 23.2 7.5 29 147-175 23-51 (83)
273 4a5x_A MITD1, MIT domain-conta 75.1 12 0.00042 23.2 7.7 32 145-176 18-49 (86)
274 2br9_A 14-3-3E, 14-3-3 protein 74.5 27 0.00091 26.7 21.9 58 204-261 147-205 (234)
275 2rpa_A Katanin P60 ATPase-cont 74.3 7.5 0.00026 23.6 4.6 31 191-221 16-46 (78)
276 3re2_A Predicted protein; meni 73.8 36 0.0012 27.9 14.0 73 101-176 255-329 (472)
277 1zbp_A Hypothetical protein VP 73.2 31 0.0011 27.0 11.6 55 68-130 6-60 (273)
278 2rpa_A Katanin P60 ATPase-cont 73.1 5.4 0.00019 24.2 3.8 35 358-392 14-48 (78)
279 2br9_A 14-3-3E, 14-3-3 protein 72.0 31 0.0011 26.4 21.7 59 245-303 146-205 (234)
280 2v6y_A AAA family ATPase, P60 71.5 15 0.00052 22.6 7.6 28 148-175 16-43 (83)
281 3ubw_A 14-3-3E, 14-3-3 protein 70.7 35 0.0012 26.5 21.9 59 245-303 172-231 (261)
282 4gq2_M Nucleoporin NUP120; bet 70.5 41 0.0014 32.3 11.1 72 102-173 841-927 (950)
283 1wfd_A Hypothetical protein 15 69.9 18 0.00062 22.9 8.0 31 146-176 18-48 (93)
284 3iqu_A 14-3-3 protein sigma; s 69.3 36 0.0012 26.0 23.5 59 245-303 149-208 (236)
285 3uzd_A 14-3-3 protein gamma; s 69.2 37 0.0013 26.2 23.1 59 245-303 147-206 (248)
286 3u84_A Menin; MLL, JUND, ledgf 67.6 55 0.0019 27.5 13.9 57 119-178 297-353 (550)
287 3t5v_B Nuclear mRNA export pro 67.2 21 0.00072 30.6 7.7 100 32-132 141-252 (455)
288 2o8p_A 14-3-3 domain containin 66.7 40 0.0014 25.6 21.9 181 64-259 11-198 (227)
289 2w2u_A Hypothetical P60 katani 66.3 19 0.00065 22.2 5.4 33 17-49 19-51 (83)
290 1o9d_A 14-3-3-like protein C; 65.1 47 0.0016 25.9 22.6 184 103-301 10-208 (260)
291 4ady_A RPN2, 26S proteasome re 64.6 1E+02 0.0035 29.5 28.7 174 15-214 411-587 (963)
292 2cpt_A SKD1 protein, vacuolar 64.3 29 0.00098 23.1 7.8 27 150-176 25-51 (117)
293 2v6x_A Vacuolar protein sortin 63.6 23 0.0008 21.8 7.4 29 147-175 17-45 (85)
294 2wvi_A Mitotic checkpoint seri 63.5 38 0.0013 24.2 8.6 82 207-300 43-125 (164)
295 2v6y_A AAA family ATPase, P60 62.4 24 0.00083 21.7 5.4 33 17-49 11-43 (83)
296 2crb_A Nuclear receptor bindin 60.6 28 0.00097 21.8 8.0 38 184-221 12-49 (97)
297 3ax2_A Mitochondrial import re 59.8 23 0.0008 21.1 4.7 27 275-301 21-47 (73)
298 3esl_A Checkpoint serine/threo 59.7 51 0.0017 24.5 14.7 86 38-130 58-144 (202)
299 3re2_A Predicted protein; meni 58.7 76 0.0026 26.1 13.5 70 188-260 256-327 (472)
300 1om2_A Protein (mitochondrial 58.1 7.5 0.00026 24.6 2.5 33 359-391 23-55 (95)
301 4gq2_M Nucleoporin NUP120; bet 55.9 1.5E+02 0.005 28.6 13.4 72 271-343 840-926 (950)
302 1qsa_A Protein (soluble lytic 55.4 1.2E+02 0.0041 27.4 22.5 249 11-299 66-347 (618)
303 3t5x_A PCI domain-containing p 55.3 46 0.0016 24.8 6.9 60 15-77 12-71 (203)
304 4gq4_A Menin; tumor suppressor 55.3 94 0.0032 26.2 14.1 57 119-178 282-338 (489)
305 2wb7_A PT26-6P; extra chromoso 55.0 24 0.00081 30.3 5.6 40 332-371 450-489 (526)
306 1om2_A Protein (mitochondrial 54.7 37 0.0013 21.5 5.2 27 275-301 24-50 (95)
307 1wy6_A Hypothetical protein ST 54.3 51 0.0018 22.8 7.0 53 239-299 101-153 (172)
308 2npm_A 14-3-3 domain containin 54.2 75 0.0026 24.7 22.0 57 245-302 172-229 (260)
309 1wy6_A Hypothetical protein ST 52.8 55 0.0019 22.7 6.1 54 196-257 100-153 (172)
310 2wvi_A Mitotic checkpoint seri 52.0 62 0.0021 23.1 10.6 82 37-130 43-125 (164)
311 2a9u_A Ubiquitin carboxyl-term 50.7 55 0.0019 22.8 6.1 40 273-314 44-83 (144)
312 4a5x_A MITD1, MIT domain-conta 50.2 43 0.0015 20.7 8.7 32 190-221 19-50 (86)
313 3u84_A Menin; MLL, JUND, ledgf 49.9 1.2E+02 0.004 25.6 13.4 53 205-260 297-349 (550)
314 2wb7_A PT26-6P; extra chromoso 49.7 35 0.0012 29.3 5.8 42 288-329 449-490 (526)
315 2r17_C Vacuolar protein sortin 49.3 99 0.0034 24.7 21.5 155 60-221 100-272 (298)
316 4aez_C MAD3, mitotic spindle c 48.4 87 0.003 23.7 11.3 83 78-172 96-179 (223)
317 4gq4_A Menin; tumor suppressor 47.8 1.3E+02 0.0043 25.5 13.4 70 188-260 263-334 (489)
318 3t5x_A PCI domain-containing p 47.7 84 0.0029 23.4 8.0 59 141-204 12-70 (203)
319 2npm_A 14-3-3 domain containin 47.5 98 0.0034 24.1 23.0 56 204-260 173-229 (260)
320 3ubw_A 14-3-3E, 14-3-3 protein 46.3 1E+02 0.0035 24.0 25.3 57 204-260 173-230 (261)
321 2cpt_A SKD1 protein, vacuolar 45.6 64 0.0022 21.4 7.9 28 320-348 25-52 (117)
322 3myv_A SUSD superfamily protei 45.2 39 0.0013 29.1 5.8 34 225-258 186-219 (454)
323 2vkj_A TM1634; membrane protei 45.1 53 0.0018 20.3 7.0 31 16-46 52-82 (106)
324 4ady_A RPN2, 26S proteasome re 45.0 2.2E+02 0.0075 27.4 29.0 175 56-257 410-588 (963)
325 3esl_A Checkpoint serine/threo 44.7 94 0.0032 23.1 16.7 86 208-300 58-144 (202)
326 2xze_A STAM-binding protein; h 44.0 33 0.0011 23.9 4.2 40 272-312 41-80 (146)
327 3kez_A Putative sugar binding 43.6 43 0.0015 28.8 5.9 34 225-258 192-225 (461)
328 2ijq_A Hypothetical protein; s 42.3 58 0.002 23.1 5.3 68 21-91 36-107 (161)
329 2wm9_A Dedicator of cytokinesi 41.3 1.7E+02 0.0057 25.0 11.5 34 13-46 6-40 (428)
330 3myv_A SUSD superfamily protei 41.1 46 0.0016 28.6 5.7 35 139-173 186-220 (454)
331 4aez_C MAD3, mitotic spindle c 40.6 1.2E+02 0.004 23.0 11.6 83 206-300 96-179 (223)
332 3kez_A Putative sugar binding 39.4 56 0.0019 28.2 5.9 34 267-300 192-225 (461)
333 2a9u_A Ubiquitin carboxyl-term 35.6 1.1E+02 0.0038 21.2 8.9 41 314-357 43-83 (144)
334 2wm9_A Dedicator of cytokinesi 35.3 2.1E+02 0.0071 24.4 11.1 29 229-257 11-39 (428)
335 3ax2_A Mitochondrial import re 35.0 73 0.0025 19.0 5.8 28 146-173 20-47 (73)
336 2ijq_A Hypothetical protein; s 33.2 1.3E+02 0.0045 21.4 8.7 69 147-220 36-108 (161)
337 3mcx_A SUSD superfamily protei 33.1 50 0.0017 28.6 4.7 34 225-258 198-231 (477)
338 2r17_C Vacuolar protein sortin 32.3 1.9E+02 0.0066 23.1 25.0 153 103-262 101-271 (298)
339 2v6x_A Vacuolar protein sortin 31.0 93 0.0032 19.0 8.1 37 14-50 10-46 (85)
340 3snx_A SUSD homolog, putative 29.9 92 0.0031 26.8 5.7 32 226-257 188-219 (460)
341 3snx_A SUSD homolog, putative 29.8 1E+02 0.0035 26.5 6.0 32 184-215 188-219 (460)
342 3mcx_A SUSD superfamily protei 29.8 59 0.002 28.2 4.5 34 139-172 198-231 (477)
343 2xze_A STAM-binding protein; h 29.4 1.4E+02 0.0049 20.7 5.5 34 143-176 40-73 (146)
344 1zb1_A BRO1 protein; AIP1, BRO 29.0 2.6E+02 0.0087 23.4 12.4 34 15-48 121-160 (392)
345 2cwy_A Hypothetical protein TT 28.5 1.1E+02 0.0039 19.2 7.3 65 149-220 7-72 (94)
346 2vkj_A TM1634; membrane protei 27.2 1.2E+02 0.004 18.9 7.0 46 101-152 53-99 (106)
347 1wfd_A Hypothetical protein 15 25.9 1.3E+02 0.0043 18.9 8.0 42 317-359 19-61 (93)
348 3lew_A SUSD-like carbohydrate 24.1 1.6E+02 0.0055 25.6 6.2 33 226-258 200-232 (495)
349 2yin_A DOCK2, dedicator of cyt 24.0 3.4E+02 0.012 23.2 9.4 101 11-113 29-145 (436)
350 3lew_A SUSD-like carbohydrate 23.9 1.8E+02 0.0062 25.3 6.5 33 184-216 200-232 (495)
351 3hdx_A SUSD homolog, SUSD supe 23.0 1.6E+02 0.0056 25.4 6.1 33 184-216 194-226 (478)
352 1zb1_A BRO1 protein; AIP1, BRO 21.8 3.5E+02 0.012 22.6 11.9 31 274-304 260-290 (392)
353 3o10_A Sacsin; all-helical dom 20.4 2.2E+02 0.0074 19.6 5.3 42 31-88 4-45 (141)
354 4a1g_A Mitotic checkpoint seri 20.3 2.3E+02 0.0079 19.9 10.4 113 4-130 15-130 (152)
No 1
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.1e-34 Score=244.93 Aligned_cols=349 Identities=17% Similarity=0.140 Sum_probs=296.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+..+..+|..+...|++++|+.+|++++... +.+.+..+.++..+|.++...|++++|+.++++++.+.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-- 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-- 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence 45567899999999999999999999999872 233445678899999999999999999999999999987753
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC-----------------
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN----------------- 158 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 158 (395)
+.+....++..+|.++...|++++|+.++++++.+.+... +.+....++..+|.++...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 5677888999999999999999999999999999988752 445677899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH
Q 016114 159 ---AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 235 (395)
Q Consensus 159 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 235 (395)
+++|+.++++++.+.... ++.+....++.++|.++...|++++|+.++++++.+..... +.+....++.++
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 233 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTAL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNL 233 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHH
Confidence 999999999999998764 46677788899999999999999999999999999987643 445667789999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 016114 236 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA 315 (395)
Q Consensus 236 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 315 (395)
|.++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|..++++++.+.... .+.+....+
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~ 309 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRA 309 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 999999999999999999999987665 3445567889999999999999999999999999988765 345667788
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc-hhhHHHHHH
Q 016114 316 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF-PLKKRLSNL 385 (395)
Q Consensus 316 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~ 385 (395)
+..+|.++...|+++ +|+.++++++++..+. ...+....++..++.++...|+...+. ...+....+
T Consensus 310 ~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 377 (406)
T 3sf4_A 310 CWSLGNAYTALGNHD-QAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEI 377 (406)
T ss_dssp HHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-----------
T ss_pred HHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999998874 345778889999999999999885544 333333333
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-34 Score=247.92 Aligned_cols=310 Identities=18% Similarity=0.228 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|..+.++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++..
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 130 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----- 130 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-----
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 334455566666666666666666666666654 1223345566666666666666666666666654
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
.|....++..+|.++...|++++|+..|++++.. .|....++.++|.++...|++++|+..|++++++.
T Consensus 131 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 199 (388)
T 1w3b_A 131 ---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199 (388)
T ss_dssp ---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445556666777777777777777777776654 34445567777777777777777777777777642
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
|+. ..++.++|.++...|++++|+..+++++.+ .|....++.++|.++...|++++|+..++
T Consensus 200 -------p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 200 -------PNF---LDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp -------TTC---HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222 345677888888888888888888887765 24445678889999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH
Q 016114 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL 333 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 333 (395)
+++. ..|....++..+|.++...|++++|+..++++++.. |++ ..++..++.++...|+++ +|
T Consensus 262 ~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~-~A 324 (388)
T 1w3b_A 262 RAIE--------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-----PTH---ADSLNNLANIKREQGNIE-EA 324 (388)
T ss_dssp HHHH--------TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHTTTCHH-HH
T ss_pred HHHh--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccc---HHHHHHHHHHHHHcCCHH-HH
Confidence 9887 246666788899999999999999999999998753 333 456788999999999999 99
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 334 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 334 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
+..++++++. .|+...++..+|.++...|++++|+..|++++++.++..
T Consensus 325 ~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 325 VRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 9999998753 344567889999999999999999999999988766543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.9e-33 Score=241.31 Aligned_cols=309 Identities=17% Similarity=0.178 Sum_probs=265.5
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+|....++..+|.++...|++++|..++++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 96 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL---- 96 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----
Confidence 4555567788999999999999999999999875 2445678999999999999999999999999986
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.|....++..+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..|+++++.
T Consensus 97 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 97 ----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5667788999999999999999999999999976 3555567889999999999999999999999885
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 252 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 252 (395)
. |+. ..++.++|.++...|++++|+..|++++.+ +|....++..+|.++...|++++|+..+
T Consensus 165 ~-------p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 165 Q-------PNF---AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp C-------TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred C-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 222 456789999999999999999999999985 3455678899999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114 253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332 (395)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (395)
++++.+ +|....++..+|.++...|++++|+..++++++.. |+. ..++..+|.++...|+++ +
T Consensus 227 ~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~-~ 289 (388)
T 1w3b_A 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-----PHF---PDAYCNLANALKEKGSVA-E 289 (388)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----SSC---HHHHHHHHHHHHHHSCHH-H
T ss_pred HHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHcCCHH-H
Confidence 999884 46667788999999999999999999999998742 343 456889999999999999 9
Q ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 333 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 333 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
|+..|+++++.. |....++..+|.++...|++++|+..+++++++.++
T Consensus 290 A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 290 AEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999862 333567889999999999999999999999876544
No 4
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-31 Score=230.01 Aligned_cols=314 Identities=17% Similarity=0.148 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
+..+..+..+|..+...|++++|+.+|++++++. ..+......++..+|.++...|++++|+.++++++.+.+...
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 5667778899999999999999999999999872 233445667899999999999999999999999999987753
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC---------------
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN--------------- 158 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------- 158 (395)
+.+....++..+|.++...|++++|+.++++++.+.... .+.+....++.++|.++...|+
T Consensus 121 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 121 --DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred --CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 567888999999999999999999999999999998875 3457788899999999999999
Q ss_pred --HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH
Q 016114 159 --AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 236 (395)
Q Consensus 159 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 236 (395)
+++|+.++++++++.... .+++....++.++|.++...|++++|+.++++++.+..... +......++.++|
T Consensus 197 ~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la 270 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDL----GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLG 270 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHH
Confidence 999999999999988764 45566778899999999999999999999999999987653 4455677899999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 016114 237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL 316 (395)
Q Consensus 237 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 316 (395)
.++...|++++|+.++++++.+.... .+......++..+|.++...|++++|..++++++.+.... .+.+....++
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 346 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARAC 346 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHH
Confidence 99999999999999999999987765 3444567888999999999999999999999999998776 4456677889
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 317 DCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 317 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
..+|.++...|+++ +|..++++++++.++
T Consensus 347 ~~la~~~~~~g~~~-~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 347 WSLGNAHSAIGGHE-RALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhccHH-HHHHHHHHHHHHHhh
Confidence 99999999999999 999999999998655
No 5
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=3.4e-31 Score=229.17 Aligned_cols=317 Identities=15% Similarity=0.084 Sum_probs=276.3
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
+.....+..+|..+...|++++|+..|++++... ..+......++..+|.++...|++++|+.++++++.+.+..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM- 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence 5667778899999999999999999999999871 22233345789999999999999999999999999998775
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC-------------
Q 016114 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------------- 202 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 202 (395)
.+++....++..+|.++...|++++|+.++++++.+.... .+.+....++.++|.++...|+
T Consensus 120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 194 (411)
T 4a1s_A 120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence 3567788999999999999999999999999999998764 4566778889999999999999
Q ss_pred ----hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 016114 203 ----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 278 (395)
Q Consensus 203 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 278 (395)
+++|+.++++++.+..... +.+....++.++|.++...|++++|+.++++++.+.... .+......++..+|
T Consensus 195 a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la 270 (411)
T 4a1s_A 195 VKEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLG 270 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHH
Confidence 9999999999999887663 456778899999999999999999999999999987765 34445667889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114 279 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT 358 (395)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 358 (395)
.++...|++++|+.++++++.+.... .+......++..+|.++...|+++ +|+.++++++.+.... .+.+....+
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~ 345 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFN-TAIEYHNRHLAIAQEL--GDRIGEARA 345 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHC--CChHHHHHH
Confidence 99999999999999999999998765 444566788999999999999999 9999999999998775 345677889
Q ss_pred HHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114 359 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 359 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
+..+|.+|...|++++|..++++++.+.++++.
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999877654
No 6
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.4e-31 Score=227.52 Aligned_cols=314 Identities=15% Similarity=0.111 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 137 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 137 (395)
.+..+...|.++...|++++|+.+|++++.. .+.+.+....++..+|.++...|++++|+.++++++.+.+.. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--c
Confidence 3456788999999999999999999999987 122333356789999999999999999999999999998765 3
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC---------------
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR--------------- 202 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------- 202 (395)
+.+....++..+|.++...|++++|+.++++++++.... +++.....++.++|.++...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 556788899999999999999999999999999998764 4556677889999999999999
Q ss_pred -----hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 016114 203 -----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277 (395)
Q Consensus 203 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (395)
+++|+.++++++.+..... +.+....++.++|.++...|++++|+.++++++.+.... ++.+....++..+
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 233 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNL 233 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Confidence 9999999999999887653 557778899999999999999999999999999987764 3445667789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114 278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 357 (395)
Q Consensus 278 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 357 (395)
|.++...|++++|+.++++++.+.... ++.+....++..+|.++...|+++ +|+.++++++.+.... .+.+....
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~--~~~~~~~~ 308 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQEL--NDRIGEGR 308 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHhc--CCcHHHHH
Confidence 999999999999999999999988764 445566788999999999999999 9999999999998774 34567788
Q ss_pred HHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
++..+|.+|...|++++|..++++++++.++.+
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999977653
No 7
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=100.00 E-value=1e-30 Score=219.92 Aligned_cols=313 Identities=15% Similarity=0.112 Sum_probs=268.0
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
...+...|..+...|++++|+..+++++... +.+.+....++..+|.++...|++++|+.++++++.+.+.. ++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cc
Confidence 3456778999999999999999999999871 22333346789999999999999999999999999998775 34
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC----------------
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---------------- 202 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 202 (395)
.+....++..+|.++...|++++|+.++++++++.... ++++....++..+|.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence 56778899999999999999999999999999998763 4556667788999999999999
Q ss_pred ----hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 016114 203 ----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 278 (395)
Q Consensus 203 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 278 (395)
+++|+.++++++.+..... +.+....++..+|.++...|++++|+.++++++.+.... .+.+....++..+|
T Consensus 155 a~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 155 VRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLG 230 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Confidence 9999999999998877654 456677889999999999999999999999999987765 34456677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114 279 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT 358 (395)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 358 (395)
.++...|++++|..++++++.+.... .+.+....++..+|.++...|+++ +|..++++++.+.... .+.+....+
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~--~~~~~~~~~ 305 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQEL--KDRIGEGRA 305 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 99999999999999999999988764 445666788999999999999999 9999999999998774 345667788
Q ss_pred HHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 359 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 359 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
+..+|.++...|++++|..++++++.+.++.+
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999988765
No 8
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=100.00 E-value=2e-30 Score=218.11 Aligned_cols=312 Identities=19% Similarity=0.164 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
....+...|..+...|++++|+.+|+++++.. +.+.+....++..+|.++...|++++|+.++++++.+.....
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-- 77 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-- 77 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--
Confidence 34567789999999999999999999999862 233445678899999999999999999999999999987763
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC-----------------
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN----------------- 158 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 158 (395)
+.+....++..+|.++...|++++|+.++++++.+.+.. ++.+....++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 567778899999999999999999999999999998774 3445577789999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH
Q 016114 159 ---AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 235 (395)
Q Consensus 159 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 235 (395)
+++|+.++++++.+.+.. .+.+....++.++|.++...|++++|+.++++++.+..... +.+....++..+
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l 229 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTAL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNL 229 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHH
Confidence 999999999999988764 45666778889999999999999999999999999887653 445667789999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 016114 236 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA 315 (395)
Q Consensus 236 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 315 (395)
|.++...|++++|..++++++.+.... .+.+....++..+|.++...|++++|..++++++.+.... .+.+....+
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~ 305 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRA 305 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 999999999999999999999987665 3445567788999999999999999999999999998775 345666778
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 316 LDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 316 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
+..+|.++...|+++ +|..++++++++.++
T Consensus 306 ~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 306 CWSLGNAYTALGNHD-QAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHH-HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCChH-HHHHHHHHHHHHHHh
Confidence 999999999999999 999999999987654
No 9
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=241.95 Aligned_cols=350 Identities=11% Similarity=0.023 Sum_probs=226.7
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc-ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
+++..+.+++.+|.++..+|++++|+.+|++|+++.+...+. .++..+.++.++|.+|..+|++++|+.++++++.+.+
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 344557788999999999999999999999999998765432 3566778899999999999999999999999999998
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHc--CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---HHHCCCHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKE--GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA---KCANGNAEEAVEL 165 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~ 165 (395)
...++.++..+.++..+|.++... +++++|+.+|++++++ .|+++. ++..++.+ +...++.++|+..
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~---~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPE---FTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHhcCchHHHHHHHH
Confidence 887777777888888888877665 4799999999999987 233333 33333333 3345555666666
Q ss_pred HHHHHHHHHhc-------------------------------ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016114 166 YKKALRVIKDS-------------------------------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 214 (395)
Q Consensus 166 ~~~a~~~~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (395)
+++++++.... ....++ ...++.++|.+|...|++++|+..+++++
T Consensus 198 ~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG---VTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 66665531100 000111 12344566777777777777777777766
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhhh-------------------cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHH
Q 016114 215 LITEKYKGKEHPSFVTHLLNLAASYSRSK-------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPML 275 (395)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (395)
+. +|....++.++|.+|...+ .+++|+..+++++.+ +|....++.
T Consensus 275 ~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~ 338 (472)
T 4g1t_A 275 EY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCS 338 (472)
T ss_dssp HH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHH
T ss_pred Hh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhh
Confidence 64 2444556666666664432 234444444444432 344555678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-HHcCCchhHHHHHHHHHHHHHHhcc------
Q 016114 276 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ-TRLGEDDTKLLELLKRVLRIQEREF------ 348 (395)
Q Consensus 276 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~A~~~~~~al~~~~~~~------ 348 (395)
.+|.++...|++++|+.+|++++++. +++......+..++.+. ...|+++ +|+.+|++++++.....
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~Ai~~y~kal~i~~~~~~~~~~~ 412 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCED-KAIHHFIEGVKINQKSREKEKMK 412 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHHHHTSSCHH-HHHHHHHHHHHSCCCCHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcCcccHHHHHHH
Confidence 89999999999999999999998742 33333344556666554 5678888 99999999987521100
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhhhc
Q 016114 349 ----------GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ 394 (395)
Q Consensus 349 ----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 394 (395)
-..+|..+.++..+|.+|...|++++|+++|++|+++.+....+..
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 0113445678999999999999999999999999999988766543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4e-31 Score=231.53 Aligned_cols=323 Identities=15% Similarity=0.126 Sum_probs=260.9
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
+-..+|..+..+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33567888899999999999999999999999999875 2333678899999999999999999999999987
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH------------HHHHHHHHHHC
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA------------MCSLAHAKCAN 156 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~ 156 (395)
.|....++..+|.++...|++++|+..|++++.. .++++....+ +..+|.++...
T Consensus 90 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 90 --------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566788999999999999999999999999865 2222210123 34557889999
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH
Q 016114 157 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 236 (395)
Q Consensus 157 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 236 (395)
|++++|+..++++++.. +.. ..++..+|.+|...|++++|+..+++++... |....++..+|
T Consensus 157 ~~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~ 218 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-------VWD---AELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKIS 218 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 99999999999998852 222 3456889999999999999999999998863 33456788999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH---------HHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114 237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM---------LHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 237 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
.++...|++++|+..+++++.+ .++++.....+ ..+|.++...|++++|+.+|++++.+. +
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p 288 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----P 288 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----C
Confidence 9999999999999999999874 22332222221 334999999999999999999998853 4
Q ss_pred CChHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 308 DSLPV-GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 308 ~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
+++.. ...+..+|.++...|+++ +|+..+++++++ .|....++..+|.++...|++++|...|++++++.
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPV-EAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 44432 567889999999999999 999999999976 23345789999999999999999999999999876
Q ss_pred HHH
Q 016114 387 MKY 389 (395)
Q Consensus 387 ~~~ 389 (395)
++.
T Consensus 360 p~~ 362 (450)
T 2y4t_A 360 END 362 (450)
T ss_dssp SSC
T ss_pred cch
Confidence 543
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.2e-30 Score=221.54 Aligned_cols=313 Identities=15% Similarity=0.134 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
+..+..+|..+...|++++|+..|+++++.. |....++..+|.++...|++++|+..+++++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 4678899999999999999999999999852 233568899999999999999999999999987
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHH------------HHHHHHCCCHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG---RVGMAMCSL------------AHAKCANGNAEE 161 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~ 161 (395)
.|....++..+|.++...|++++|+..+++++.. .| ....++..+ |.++...|++++
T Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 4556688999999999999999999999999875 33 334444444 799999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh
Q 016114 162 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 241 (395)
Q Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 241 (395)
|+..++++++.. |+. ..++..+|.++...|++++|+..+++++.. .|....++..+|.++..
T Consensus 139 A~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 139 AITFLDKILEVC-------VWD---AELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------CCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence 999999998852 233 356788999999999999999999999874 34455788999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHH---------HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH-
Q 016114 242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFP---------MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP- 311 (395)
Q Consensus 242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 311 (395)
.|++++|...+++++.. .++++..... ...+|.++...|++++|+..+++++... ++.+.
T Consensus 201 ~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ 270 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEY 270 (359)
T ss_dssp HTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHH
T ss_pred cCCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHH
Confidence 99999999999999874 2333332221 2355889999999999999999998854 44443
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
....+..+|.++...|+++ +|+..++++++. .|....++..+|.++...|++++|...|++++++.++..
T Consensus 271 ~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPV-EAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHHccCHH-HHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 3456778999999999999 999999999986 233356889999999999999999999999998876543
No 12
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-28 Score=210.39 Aligned_cols=352 Identities=8% Similarity=0.011 Sum_probs=269.0
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHH--HHHHHhhCchhHHH-----------H
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM--AKVLGSIGRAKKAV-----------E 80 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------~ 80 (395)
+.......+-...+...+++++|..+++++.+...... .++... .++.+ .......+.+..+. .
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME--EDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC--CCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc--cchHHH-HHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence 33334444445566789999999999999877665431 223322 22221 22223334444444 4
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH
Q 016114 81 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 160 (395)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 160 (395)
.+++.-...... +.......++..|..+...|++++|+.++++++.+.+.. ++++..+.++..+|.+|...|+++
T Consensus 86 ~~~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~ 160 (383)
T 3ulq_A 86 LLLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTY 160 (383)
T ss_dssp HHHHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHH
Confidence 444432221110 011122345568999999999999999999999886653 345568899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114 161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240 (395)
Q Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 240 (395)
+|+.++++++++.++. +...+....++.++|.+|...|++++|+.++++++++.+... +.+....++.++|.+|.
T Consensus 161 ~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 161 FSMDYARQAYEIYKEH---EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp HHHHHHHHHHHHHHTC---STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHH
Confidence 9999999999999864 223667788999999999999999999999999999987753 56677889999999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320 (395)
Q Consensus 241 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 320 (395)
.+|++++|+.++++++.+.... .+.|....++.++|.++...|++++|..++++++.+.... ..+.....+..++
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLK 310 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Confidence 9999999999999999987765 2227778899999999999999999999999999998775 3344444477899
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
.++...|+. ..+++++..+++. ...+....++..+|.+|...|++++|..++++++.+.+++.
T Consensus 311 ~~~~~~~~~-----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 311 SLYLSGPDE-----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HHHTSSCCH-----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHhCCCcH-----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999874 3556666666654 45678888999999999999999999999999999987654
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.8e-29 Score=227.72 Aligned_cols=324 Identities=12% Similarity=0.047 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC-----------------------------------------
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG----------------------------------------- 52 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------- 52 (395)
+..+.+++.+|.+|...|++++|+..|+++++.......
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 456788999999999999999999999999865311000
Q ss_pred ----------------------cChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHH
Q 016114 53 ----------------------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL 110 (395)
Q Consensus 53 ----------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 110 (395)
...+....++..+|.++...|++++|+..|++++.. .|....++..++.+
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLAS 348 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHH
Confidence 000123445667778888888888888888887764 23445667778888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114 111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 190 (395)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (395)
+...|++++|...+++++.. .|....++..+|.+|...|++++|..+|++++++. +.. ..++
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~---~~~~ 410 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-------PQF---GPAW 410 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHH
T ss_pred HHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC---HHHH
Confidence 88888888888888887754 34445678889999999999999999999998852 222 3466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 270 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 270 (395)
..++.++...|++++|+..|++++.. .|....++..+|.++...|++++|..+|++++.. .|..
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~ 474 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYD 474 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence 88999999999999999999998864 2334467888999999999999999999999874 3445
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 349 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 349 (395)
..++..+|.++...|++++|+.+|+++++..... +..|. ...++..++.++...|+++ +|+..++++++..
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~----- 546 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYD-AAIDALNQGLLLS----- 546 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHS-----
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhC-----
Confidence 6788999999999999999999999999986543 23344 3678999999999999999 9999999999762
Q ss_pred CCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 350 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 350 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
+. ...++..++.+|...|++++|..+|++++++.++..
T Consensus 547 p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 547 TN---DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 33 357889999999999999999999999999887654
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.7e-29 Score=226.19 Aligned_cols=326 Identities=14% Similarity=0.096 Sum_probs=259.2
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHH---------
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH--------- 83 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------- 83 (395)
+|..+.++..+|.++...|++++|+..|++++++. |....++..+|.++...|++++|+..|+
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 126 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--------PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFD 126 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Confidence 34456778899999999999999999999998862 3345678899999999999999988663
Q ss_pred --------------------------------------------------------------------------------
Q 016114 84 -------------------------------------------------------------------------------- 83 (395)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (395)
T Consensus 127 ~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 206 (537)
T 3fp2_A 127 GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSA 206 (537)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHh
Confidence
Q ss_pred -------------HHHHHHHHhcC--CCChh----hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 016114 84 -------------RVITILELNRG--TESAD----LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 144 (395)
Q Consensus 84 -------------~al~~~~~~~~--~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 144 (395)
+++..+++... ++++. .+.++..+|.++...|++++|+..+++++.. .|. ..
T Consensus 207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~ 277 (537)
T 3fp2_A 207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PN 277 (537)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-ch
Confidence 22222222211 11111 2456888999999999999999999999986 334 57
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (395)
++..+|.++...|++++|+..++++++.. ++. ..++..+|.++...|++++|+..+++++...
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------- 340 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN-------PEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN------- 340 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC-------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------
Confidence 88999999999999999999999999853 232 3457889999999999999999999999862
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 304 (395)
|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++.....
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 333467889999999999999999999999884 35556788999999999999999999999999987543
Q ss_pred cCCCChHHHHHHHHHHHHHHHc----------CCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhh
Q 016114 305 FGKDSLPVGEALDCLVSIQTRL----------GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 374 (395)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 374 (395)
. ........+..++.++... |+++ +|+.+|+++++.. |....++..+|.+|...|++++
T Consensus 412 ~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 412 E--KIHVGIGPLIGKATILARQSSQDPTQLDEEKFN-AAIKLLTKACELD--------PRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp S--SCSSTTHHHHHHHHHHHHHHTC----CCHHHHH-HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred h--hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH-HHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHH
Confidence 2 2222233456788889988 9999 9999999999862 3334778999999999999999
Q ss_pred hchhhHHHHHHHHHHHhh
Q 016114 375 KFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 375 A~~~~~~a~~~~~~~~~~ 392 (395)
|..+|++++++.+...+.
T Consensus 481 A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 999999999998765543
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=3.2e-29 Score=224.46 Aligned_cols=324 Identities=17% Similarity=0.171 Sum_probs=263.3
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
.+..+..+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..+++++..
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 88 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--------PNEPVFYSNISACYISTGDLEKVIEFTTKALEI---- 88 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 34567889999999999999999999999999862 334578999999999999999999999999987
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHH-----------------------------------------------
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFS----------------------------------------------- 125 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------------------------------------------- 125 (395)
.|....++..+|.++...|++++|+..|+
T Consensus 89 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 89 ----KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred ----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 46677889999999999999999988763
Q ss_pred -------------------------------------------------------HHHHHHHHHhC--CCChh----HHH
Q 016114 126 -------------------------------------------------------RILKIYTKVYG--ENDGR----VGM 144 (395)
Q Consensus 126 -------------------------------------------------------~al~~~~~~~~--~~~~~----~~~ 144 (395)
+++..+++... ++++. .+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH
Confidence 22222222221 22222 255
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (395)
++..+|.++...|++++|+..++++++. .++ ..++..+|.++...|++++|+.++++++..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 305 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL-------HPT----PNSYIFLALTLADKENSQEFFKFFQKAVDL-------- 305 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-------CCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------
Confidence 7888999999999999999999999985 222 456788999999999999999999999875
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 304 (395)
.|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++..
T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 374 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--- 374 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 2444567899999999999999999999999884 34455788999999999999999999999998863
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh----------cchhh
Q 016114 305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL----------GRKEE 374 (395)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~ 374 (395)
+++ ..++..+|.++...|+++ +|+..|+++++....... .......+..+|.++... |++++
T Consensus 375 --~~~---~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 375 --PTL---PEVPTFFAEILTDRGDFD-TAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp --TTC---THHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred --CCC---hHHHHHHHHHHHHhCCHH-HHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 333 346788999999999999 999999999998765322 112234467788999999 99999
Q ss_pred hchhhHHHHHHHHHHH
Q 016114 375 KFPLKKRLSNLRMKYK 390 (395)
Q Consensus 375 A~~~~~~a~~~~~~~~ 390 (395)
|+.+|++++++.++..
T Consensus 447 A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 447 AIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCCCH
Confidence 9999999998876543
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.97 E-value=1e-27 Score=205.06 Aligned_cols=272 Identities=8% Similarity=-0.004 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
..++..|..+...|++++|+.++++++.+.+.. ++.+..+.++..+|.++...|++++|+.++.+++++.+.. +...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 180 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYN 180 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccch
Confidence 355668999999999999999999999886653 3566688999999999999999999999999999998874 2225
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
+..+.++.++|.+|...|++++|+.++++++++.++. ++++....++.++|.+|...|++++|+.++++++.+.+.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 6678899999999999999999999999999998864 567777889999999999999999999999999999876
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
.. +.|....++.++|.++...|++++|..++++++.+.... .++.....+..+|.++...|++ ..+++++.
T Consensus 257 ~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~ 327 (383)
T 3ulq_A 257 SN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDE----EAIQGFFD 327 (383)
T ss_dssp TT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCH----HHHHHHHH
T ss_pred hc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHH
Confidence 53 226778899999999999999999999999999988766 3344444467899999999995 44555555
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114 300 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS 350 (395)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 350 (395)
..++. ...+....++..+|.++...|+++ +|..++++++++.+++...
T Consensus 328 ~~~~~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~i~~~ 375 (383)
T 3ulq_A 328 FLESK--MLYADLEDFAIDVAKYYHERKNFQ-KASAYFLKVEQVRQLIQGG 375 (383)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTSCSSC
T ss_pred HHHHC--cCHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhhcc
Confidence 55554 456777888999999999999999 9999999999998876543
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=204.71 Aligned_cols=287 Identities=21% Similarity=0.243 Sum_probs=236.3
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114 5 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 84 (395)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (395)
..+..++++|..+.++..+|.++...|++++|+.++++++++.....+++.+....++..+|.++...|++++|+.++++
T Consensus 15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 15 YFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp SCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44567788999999999999999999999999999999999988876667888999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114 85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 164 (395)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 164 (395)
++.+.+...+++.+....++..+|.++...|++++|+.++++++.+.+...+++++....++..+|.++...|++++|+.
T Consensus 95 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 95 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999888777889999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh-CCCChh------HHHHHHHHHH
Q 016114 165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPS------FVTHLLNLAA 237 (395)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~------~~~~~~~la~ 237 (395)
++++++++.... .+++.+....++..+|.++...|++++|+.++++++....... +...+. ....+..++.
T Consensus 175 ~~~~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3nf1_A 175 YYQRALEIYQTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG 252 (311)
T ss_dssp HHHHHHHHHHHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcC
Confidence 999999998764 4456777788899999999999999999999999998765421 111111 2223334444
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 238 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
.+...+.+.+|...+.++.. .+|....++..+|.+|...|++++|..++++++++.
T Consensus 253 ~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 253 KQKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -----CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 45555566666666666554 467788899999999999999999999999999875
No 18
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.3e-28 Score=203.23 Aligned_cols=285 Identities=22% Similarity=0.220 Sum_probs=234.3
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.++++|....++..+|.++...|++++|+.++++++.+.....+++++....++..+|.++...|++++|+.++++++.+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999998877778889999999999999999999999999999998
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 252 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 252 (395)
.... .+++++....++.++|.++...|++++|+.++++++.+.....+.+++....++..+|.++...|++++|+.++
T Consensus 99 ~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 99 REKT--LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHH--hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8764 34566777888999999999999999999999999999988877788999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-cCCCChH------HHHHHHHHHHHHHH
Q 016114 253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLP------VGEALDCLVSIQTR 325 (395)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~------~~~~~~~l~~~~~~ 325 (395)
++++.+.....+++++....++..+|.++...|++++|..+++++++..... ++...+. ....+..++..+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 9999998888777788889999999999999999999999999999876542 1111111 12333344555555
Q ss_pred cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 326 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 326 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
.+.+. +|...++++.. .+|....++..+|.+|...|++++|..+|++++++.++
T Consensus 257 ~~~~~-~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 257 GTSFG-EYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCSC-CCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHH-HHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 56666 66666666653 56888999999999999999999999999999998764
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1e-29 Score=216.64 Aligned_cols=314 Identities=16% Similarity=0.075 Sum_probs=242.3
Q ss_pred HHHHHhhhcHHHHHH-HHHHHHHHHHHhcCcChH-HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114 24 GSMYSTLENYEKSML-VYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 101 (395)
Q Consensus 24 ~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (395)
+.++...|+|++|+. .|.+++.+. ++.| .....++.+|.++...|++++|+..+++++.. .|...
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 98 (368)
T 1fch_A 32 AEAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHM 98 (368)
T ss_dssp --------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCH
T ss_pred chhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCH
Confidence 346777899999999 888887642 2222 23456788999999999999999999999875 56677
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++....
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------- 163 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP------- 163 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------
Confidence 88999999999999999999999999987 344567899999999999999999999999998532
Q ss_pred CchHHH-------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114 182 DDSIME-------------NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248 (395)
Q Consensus 182 ~~~~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 248 (395)
+..... .....++.++ ..|++++|+..+++++... +..+ ...++..+|.++...|++++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-----PTSI-DPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp TTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-----TTSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-----cCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 221111 1112466666 8999999999999998862 1111 456788999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114 249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 328 (395)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (395)
+..+++++.+ .|....++..+|.++...|++++|+..+++++.+. |....++..+|.++...|+
T Consensus 237 ~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 237 VDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCC
Confidence 9999999984 45567789999999999999999999999998863 3344678999999999999
Q ss_pred chhHHHHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 329 DDTKLLELLKRVLRIQEREFGS---ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 329 ~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
++ +|+.+|++++.+.....++ .++....++..+|.++...|++++|..+++++++..++.
T Consensus 301 ~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 301 HR-EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HH-HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HH-HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 99 9999999999987653221 112236789999999999999999999999999876653
No 20
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.97 E-value=2.8e-27 Score=201.89 Aligned_cols=339 Identities=12% Similarity=0.038 Sum_probs=256.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHH--HHHhhCchhHHH---------HHHHHHHHHHHHhcCCC
Q 016114 28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK--VLGSIGRAKKAV---------EIYHRVITILELNRGTE 96 (395)
Q Consensus 28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~---------~~~~~al~~~~~~~~~~ 96 (395)
...+++++|...++++........ .++... .++.+-. .....+.+..+. ..+++.-...... +
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~---~ 96 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQME--EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL---T 96 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBC--CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---H
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc--ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---c
Confidence 788999999999999876654431 122222 2232222 122223333333 3333322111110 1
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
+......++..|..+...|++++|+.++++++.+.... ++.+..+.++.++|.+|...|++++|+.++++++++.++.
T Consensus 97 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 12223356778999999999999999999999887653 3456788999999999999999999999999999998763
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
+...+....++.++|.++...|++++|+.++++++++.+... +.+....++.++|.+|..+|++++|+.++++++
T Consensus 175 ---~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 175 ---PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222456788899999999999999999999999999987653 445677889999999999999999999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHH
Q 016114 257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 336 (395)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 336 (395)
.+.... .+|....++..+|.++...|++++|..++++++++.... ..+.....+..++.++...++. ..
T Consensus 250 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~-----~~ 318 (378)
T 3q15_A 250 KVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDE-----RK 318 (378)
T ss_dssp HHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCH-----HH
T ss_pred HHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH-----HH
Confidence 988765 456668899999999999999999999999999987543 2333444567788888777762 34
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 337 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 337 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
+.+++..+++. ...+.....+..+|.+|...|++++|..+|++++++.+++...
T Consensus 319 ~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 372 (378)
T 3q15_A 319 IHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKG 372 (378)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 55555555552 4567788889999999999999999999999999999987653
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.6e-29 Score=215.08 Aligned_cols=297 Identities=15% Similarity=0.094 Sum_probs=230.6
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
++..+..++.+|..+...|++++|+.+|++++... |....++..+|.++...|++++|+..|++++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 128 (365)
T 4eqf_A 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL---- 128 (365)
T ss_dssp TTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 33445668899999999999999999999999862 334667899999999999999999999999987
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG--RVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
.|....++..+|.++...|++++|+.++++++.+.......... .....+..+|.++...|++++|+.++++++
T Consensus 129 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 129 ----QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45667889999999999999999999999999875443111000 123445667999999999999999999999
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHH
Q 016114 171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 250 (395)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 250 (395)
+.. |+.. ...++.++|.++...|++++|+.++++++++ .|....++.++|.++...|++++|+.
T Consensus 205 ~~~-------p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 205 HQN-------GDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHS-------CSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhC-------cCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 863 2210 1346688999999999999999999999986 24446688999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHHHHHc
Q 016114 251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP----VGEALDCLVSIQTRL 326 (395)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~l~~~~~~~ 326 (395)
.+++++.+ +|....++..+|.++...|++++|+.+|++++++.....++.++. ...++..++.++...
T Consensus 269 ~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (365)
T 4eqf_A 269 AYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340 (365)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred HHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence 99999984 466688999999999999999999999999999886543332221 256788999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhccCC
Q 016114 327 GEDDTKLLELLKRVLRIQEREFGS 350 (395)
Q Consensus 327 ~~~~~~A~~~~~~al~~~~~~~~~ 350 (395)
|+.+ .+....++.++.+++.++.
T Consensus 341 g~~~-~a~~~~~~~l~~~~~~~~~ 363 (365)
T 4eqf_A 341 DQPE-LFQAANLGDLDVLLRAFNL 363 (365)
T ss_dssp TCHH-HHHHHHTTCCGGGTTTTTC
T ss_pred CcHH-HHHHHHHhhHHHHHHhcCC
Confidence 9998 8888888777766655543
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=210.37 Aligned_cols=298 Identities=12% Similarity=0.154 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
..++..+|..++..|++++|+..+++++... |....++..++.++...|++++|+..+++++..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------- 85 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDL-------- 85 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------
Confidence 3457789999999999999999999998752 223345667889999999999999999999886
Q ss_pred ChhhhhhHHhHHHHHHHcC-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 97 SADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|....++..+|.++...| ++++|+.++++++.. .|....++..+|.++...|++++|+..++++++...
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~- 156 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK- 156 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-
Confidence 4566788999999999999 999999999999875 344456789999999999999999999999998632
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
+. ...+..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..++++
T Consensus 157 ------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 157 ------GC---HLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp ------TC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------cc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 22 234567999999999999999999999874 3445678899999999999999999999999
Q ss_pred HHHHHHhhCCCC-cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114 256 LDIMTKTVGPDD-QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 334 (395)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 334 (395)
+.+......... +....++..+|.++...|++++|+.+++++++.. ++ ...++..+|.++...|+++ +|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~---~~~~~~~la~~~~~~g~~~-~A~ 290 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQ---NASTYSAIGYIHSLMGNFE-NAV 290 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CSHHHHHHHHHHHHHTCHH-HHH
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----cc---chHHHHHHHHHHHHhccHH-HHH
Confidence 997655433222 4556788999999999999999999999999864 33 3456889999999999999 999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH-HHhcchh
Q 016114 335 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYL-DKLGRKE 373 (395)
Q Consensus 335 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 373 (395)
.++++++++ .|+...++..++.++ ...|+.+
T Consensus 291 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 291 DYFHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 999998864 233356788889988 4555543
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-28 Score=216.11 Aligned_cols=325 Identities=15% Similarity=0.088 Sum_probs=267.3
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
...+..+..+|..++..|++++|+..|++++... ++ ..++..+|.++...|++++|+..++++++.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 68 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL----- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----
Confidence 3567889999999999999999999999999862 22 567889999999999999999999999986
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH-----------------------h---------------
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-----------------------Y--------------- 135 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~--------------- 135 (395)
.|....++..+|.++...|++++|+..|++++...... .
T Consensus 69 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 69 ---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred ---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 46677899999999999999999999999987642100 0
Q ss_pred ---------CC------------------------CChhHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhcccC
Q 016114 136 ---------GE------------------------NDGRVGMAMCSLAHAKCA---NGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 136 ---------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
.+ ..|.....+..+|.++.. .|++++|+..++++++..+.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 00 002235667778887776 899999999999999954332101
Q ss_pred CCCc----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 180 SLDD----SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 180 ~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
.++. +....++..+|.++...|++++|+..+++++.. .|. ..++..+|.++...|++++|+..++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222 566778899999999999999999999999875 233 778899999999999999999999999
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114 256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 335 (395)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 335 (395)
+.. .|....++..+|.++...|++++|+..+++++... +.. ..++..+|.++...|+++ +|+.
T Consensus 297 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~~~~~-~A~~ 359 (514)
T 2gw1_A 297 LKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-----PEN---IFPYIQLACLAYRENKFD-DCET 359 (514)
T ss_dssp HTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-----SSC---SHHHHHHHHHTTTTTCHH-HHHH
T ss_pred hhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----hhh---HHHHHHHHHHHHHcCCHH-HHHH
Confidence 862 45556788999999999999999999999998743 333 347889999999999999 9999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 336 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 336 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
.++++++.. + ....++..+|.++...|++++|+..+++++.+.++.
T Consensus 360 ~~~~~~~~~-----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 360 LFSEAKRKF-----P---EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHHHS-----T---TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHc-----c---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 999999752 2 234678899999999999999999999999987765
No 24
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=219.86 Aligned_cols=288 Identities=13% Similarity=0.072 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHHhc--CCCC----hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH
Q 016114 59 VTSLLGMAKVLGS---IGRAKKAVEIYHRVITILELNR--GTES----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 129 (395)
Q Consensus 59 ~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (395)
...+..+|.++.. .|++++|+..+++++...+... .+++ |....++..+|.++...|++++|+..+++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566777777776 8999999999999998654433 2222 66788999999999999999999999999998
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 016114 130 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 209 (395)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (395)
. .|. ..++..+|.++...|++++|+..+++++.. .+.. ..++..+|.++...|++++|+..
T Consensus 266 ~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 266 L--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL-------DSNN---SSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp H--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-------CTTC---THHHHHHHHHHHHTTCTTHHHHH
T ss_pred h--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-------CcCC---HHHHHHHHHHHHHhCCHHHHHHH
Confidence 6 233 788999999999999999999999999874 2232 33568899999999999999999
Q ss_pred HHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHH
Q 016114 210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 289 (395)
Q Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 289 (395)
+++++.. .|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++
T Consensus 327 ~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 327 FDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHH
Confidence 9999875 2333457889999999999999999999999874 34455788999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q 016114 290 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR---LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL 366 (395)
Q Consensus 290 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 366 (395)
|+.++++++...... +.......++..+|.++.. .|+++ +|+..+++++... |....++..+|.++
T Consensus 391 A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~-~A~~~~~~a~~~~--------~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 391 ALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFI-EATNLLEKASKLD--------PRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHH-HHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHHHHHHHHhC--------cccHHHHHHHHHHH
Confidence 999999999876322 1111113468899999999 99999 9999999999862 23356788999999
Q ss_pred HHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 367 DKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 367 ~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
...|++++|...|++++++.++....
T Consensus 460 ~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhccccHHH
Confidence 99999999999999999988766543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=2.3e-28 Score=207.96 Aligned_cols=289 Identities=13% Similarity=0.003 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 137 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 137 (395)
....++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 128 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL------- 128 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 3456888999999999999999999999986 4566789999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
.|....++..+|.++...|++++|+..+++++++.................+..+|.++...|++++|+.++++++...
T Consensus 129 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 129 -QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred -CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 3455678999999999999999999999999997543210000000123445667999999999999999999999862
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114 218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 218 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 297 (395)
+.. ....++..+|.++...|++++|+..+++++.+ .|....++..+|.++...|++++|+..|+++
T Consensus 208 -----p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 208 -----GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp -----CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 121 13567889999999999999999999999984 4566778999999999999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHHHHhcchh
Q 016114 298 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE----VMLTLKKVVSYLDKLGRKE 373 (395)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~ 373 (395)
+++. |....++..+|.++...|+++ +|+.+|++++++.....++.++. ...++..++.++..+|+.+
T Consensus 274 l~~~--------p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 274 LEIQ--------PGFIRSRYNLGISCINLGAYR-EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHC--------TTCHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HhcC--------CCchHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 9863 334567899999999999999 99999999999987755443322 3578899999999999999
Q ss_pred hhchhhHHHHHH
Q 016114 374 EKFPLKKRLSNL 385 (395)
Q Consensus 374 ~A~~~~~~a~~~ 385 (395)
.|....++.+..
T Consensus 345 ~a~~~~~~~l~~ 356 (365)
T 4eqf_A 345 LFQAANLGDLDV 356 (365)
T ss_dssp HHHHHHTTCCGG
T ss_pred HHHHHHHhhHHH
Confidence 988877765443
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=2.1e-28 Score=208.44 Aligned_cols=286 Identities=16% Similarity=0.155 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
...++.+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+..+++++..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 127 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-------- 127 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------
Confidence 556789999999999999999999999875 2334567889999999999999999999999987
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH-------------HHHHHHHHHHHHCCCHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-------------MAMCSLAHAKCANGNAEEAV 163 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------~~~~~la~~~~~~g~~~~A~ 163 (395)
.|....++..+|.++...|++++|+..+++++... ++.+... .....++.++ ..|++++|+
T Consensus 128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~ 201 (368)
T 1fch_A 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-----PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVK 201 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTGGGCC---------------CTTHHHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHH
Confidence 45667889999999999999999999999999763 2222111 1122466666 899999999
Q ss_pred HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 243 (395)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 243 (395)
..++++++.. |+.. ...++..+|.++...|++++|+.++++++.+ .|....++..+|.++...|
T Consensus 202 ~~~~~a~~~~-------p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 202 ELFLAAVRLD-------PTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHS-------TTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-------cCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHcC
Confidence 9999999863 2211 2456788999999999999999999999986 2444568899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC---CChHHHHHHHHHH
Q 016114 244 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK---DSLPVGEALDCLV 320 (395)
Q Consensus 244 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~l~ 320 (395)
++++|+..+++++.+ .|....++..+|.++...|++++|+.++++++.+.....++ .++....++..++
T Consensus 266 ~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 266 QSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 999999999999984 45667889999999999999999999999999987443111 1233367899999
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114 321 SIQTRLGEDDTKLLELLKRVLRIQEREFG 349 (395)
Q Consensus 321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 349 (395)
.++...|+++ +|...++++++.+.+.++
T Consensus 338 ~~~~~~g~~~-~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 338 LALSMLGQSD-AYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHTCGG-GHHHHHTTCHHHHHHHTT
T ss_pred HHHHHhCChH-hHHHhHHHHHHHHHHhcC
Confidence 9999999999 999999999988877654
No 27
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=8.2e-28 Score=210.51 Aligned_cols=295 Identities=13% Similarity=0.103 Sum_probs=233.0
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+|....++..+|.++...|++++|+..|+++++.. |....++..+|.++...|++++|+..|++++..
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 123 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---- 123 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 34457788999999999999999999999999862 333567889999999999999999999999874
Q ss_pred cCCCChhhhhh------------HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH
Q 016114 93 RGTESADLVLP------------LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 160 (395)
Q Consensus 93 ~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 160 (395)
.++.+....+ +..+|.++...|++++|+..+++++.. .|....++..+|.+|...|+++
T Consensus 124 -~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 124 -NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGG
T ss_pred -CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHH
Confidence 2222210133 344578899999999999999999876 3444567899999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH--------
Q 016114 161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-------- 232 (395)
Q Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------- 232 (395)
+|+..++++++.. ++. ..++..+|.++...|++++|+..+++++... ++++.....+
T Consensus 195 ~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 195 KAISDLKAASKLK-------NDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp GGHHHHHHHHHHH-------CSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHH
Confidence 9999999999864 222 3567889999999999999999999998752 2333322222
Q ss_pred -HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114 233 -LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 310 (395)
Q Consensus 233 -~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 310 (395)
..+|.++...|++++|+.+|++++.+ .++++. ....+..+|.++...|++++|+..+++++... |
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p 326 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--------P 326 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------c
Confidence 34499999999999999999999874 223222 24578899999999999999999999998753 3
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 016114 311 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY 365 (395)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 365 (395)
....++..+|.++...|+++ +|+..|++++++ .+++ ..++..++.+
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~-----~p~~---~~~~~~l~~~ 372 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYD-EAIQDYETAQEH-----NEND---QQIREGLEKA 372 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----SSSC---HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHh-----Ccch---HHHHHHHHHH
Confidence 33467899999999999999 999999999974 2344 3455666633
No 28
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.96 E-value=1.5e-26 Score=197.37 Aligned_cols=270 Identities=13% Similarity=0.062 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 137 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 137 (395)
....++..|..+...|++++|+.+|++++.+.... ++.+..+.++..+|.+|...|++++|+.++++++++.++.. .
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~ 176 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-L 176 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-T
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-C
Confidence 34467788999999999999999999999987654 35677889999999999999999999999999999987642 1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
..+..+.++.++|.+|...|++++|+.++++++++.++. +++.....++.++|.+|...|++++|+.++++++.+.
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 134578899999999999999999999999999998763 4556778889999999999999999999999999988
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114 218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 218 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 297 (395)
+... +|....++.++|.++...|++++|..++++++.+..+. .++.....+..++.++...|+. ..+.++
T Consensus 253 ~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~----~~~~~a 322 (378)
T 3q15_A 253 REKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDE----RKIHDL 322 (378)
T ss_dssp HHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCH----HHHHHH
T ss_pred HhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH----HHHHHH
Confidence 7653 45568899999999999999999999999999975443 2345555678889999988883 333444
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhc
Q 016114 298 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE 347 (395)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~ 347 (395)
+...++. ...+.....+..+|.++...|+++ +|..+|++++++.+++
T Consensus 323 l~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 323 LSYFEKK--NLHAYIEACARSAAAVFESSCHFE-QAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CChhHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHH
Confidence 4444332 455677778889999999999999 9999999999987664
No 29
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.96 E-value=2.6e-27 Score=193.99 Aligned_cols=270 Identities=21% Similarity=0.177 Sum_probs=227.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHH
Q 016114 112 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 191 (395)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 191 (395)
...|++++|+.+++++++++.+..+.++|....++..+|.++...|++++|+.++++++++.... .+++++....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT--LGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--cCCcchHHHHHHH
Confidence 45789999999999999999999888889999999999999999999999999999999998765 4567788888999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114 192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 271 (395)
Q Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 271 (395)
++|.++...|++++|+.++++++.+.++..++++|....++.++|.++...|++++|+.++++++.+.....++++|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999999998888888888899
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS 350 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 350 (395)
.++..+|.++...|++++|+.++++++.+.... .+...+.....+..++......+... .+ ..+.++...... .+.
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~ 246 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-DS-APYGEYGSWYKA-CKV 246 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC-C-------------C-CCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh-HH-HHHHHHHHHHHh-cCC
Confidence 999999999999999999999999999986553 22334444455666777766666554 33 345555555544 456
Q ss_pred CCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 351 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 351 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
.+|....++..+|.+|..+|++++|..++++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 779999999999999999999999999999998753
No 30
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=5.6e-27 Score=198.88 Aligned_cols=298 Identities=13% Similarity=0.108 Sum_probs=236.9
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..+++++..
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 100 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---- 100 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS----
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence 34456788999999999999999999999999862 233467899999999999999999999999875
Q ss_pred cCCCCh---hhhhhHHhH------------HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC
Q 016114 93 RGTESA---DLVLPLFSL------------GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 157 (395)
Q Consensus 93 ~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 157 (395)
.| ....++..+ |.++...|++++|+..+++++.. .|....++..+|.++...|
T Consensus 101 ----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 101 ----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEG 168 (359)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred ----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCC
Confidence 33 444445444 79999999999999999999986 3444578899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH------
Q 016114 158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH------ 231 (395)
Q Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------ 231 (395)
++++|+..++++++. .++. ..++..+|.++...|++++|+..+++++... ++++.....
T Consensus 169 ~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 169 EPRKAISDLKAASKL-------KSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKK 233 (359)
T ss_dssp CHHHHHHHHHHHHTT-------CSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHH
Confidence 999999999999874 2333 3567899999999999999999999998763 233332222
Q ss_pred ---HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114 232 ---LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 232 ---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
...+|.++...|++++|+..+++++... ++++. ...++..+|.++...|++++|+..++++++.. +
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~ 303 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-----P 303 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----c
Confidence 3355899999999999999999998842 22222 23457789999999999999999999998862 3
Q ss_pred CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Q 016114 308 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 371 (395)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 371 (395)
+ ...++..+|.++...|+++ +|+..|++++++ .|++ ..+...++.+....++
T Consensus 304 ~---~~~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~-----~p~~---~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 304 D---NVNALKDRAEAYLIEEMYD-EAIQDYEAAQEH-----NEND---QQIREGLEKAQRLLKQ 355 (359)
T ss_dssp T---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHHHH
T ss_pred c---cHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHHHH
Confidence 3 3457899999999999999 999999999974 2334 4456666666665543
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.5e-28 Score=201.25 Aligned_cols=279 Identities=14% Similarity=0.056 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
..+..+|..+...|++++|+..+++++.. .|....++..++.++...|++++|...+++++.. .
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~ 86 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------Y 86 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------C
Confidence 45677899999999999999999999875 4555677888899999999999999999999986 3
Q ss_pred hhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 140 GRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
|....++..+|.++...| ++++|+.++++++.. .+.. ..++..+|.++...|++++|+..+++++...
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 155 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL-------EKTY---GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM- 155 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-------CTTC---THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-------CCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence 444567899999999999 999999999999874 2232 3456889999999999999999999999863
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114 219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 298 (395)
Q Consensus 219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 298 (395)
|....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|++++|+.++++++
T Consensus 156 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 156 -------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp -------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22334577799999999999999999999987 346667889999999999999999999999999
Q ss_pred HHHHHHcCCCC-hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhch
Q 016114 299 YIREIAFGKDS-LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP 377 (395)
Q Consensus 299 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 377 (395)
........... +....++..+|.++...|+++ +|+.++++++++. |....++..+|.++...|++++|..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA-EALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHH
Confidence 98755432222 344567889999999999999 9999999999863 2335678999999999999999999
Q ss_pred hhHHHHHHHHHH
Q 016114 378 LKKRLSNLRMKY 389 (395)
Q Consensus 378 ~~~~a~~~~~~~ 389 (395)
++++++++.++.
T Consensus 292 ~~~~al~~~p~~ 303 (330)
T 3hym_B 292 YFHTALGLRRDD 303 (330)
T ss_dssp HHHTTTTTCSCC
T ss_pred HHHHHHccCCCc
Confidence 999998876543
No 32
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.6e-27 Score=212.66 Aligned_cols=293 Identities=14% Similarity=0.137 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|....++..+|..+...|++++|+.+|++++... |....++..++.++...|++++|...+++++..
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 368 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR----- 368 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----
Confidence 4456778899999999999999999999998752 223345778899999999999999999998864
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
.|....++..+|.+|...|++++|..+|++++++ .|....++..++.++...|++++|+..|+++++..
T Consensus 369 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 369 ---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp ---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556788899999999999999999999999876 34445688999999999999999999999998742
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
++. ..++..++.++...|++++|+.+|+++++.. |....++..+|.++...|++++|+.+|+
T Consensus 438 -------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 438 -------QGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALF--------QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp -------TTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------ccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 222 3456789999999999999999999998752 2334678899999999999999999999
Q ss_pred HHHHHHHHhhCCCCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114 254 ICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (395)
++++..... +.+|. ...++..+|.++...|++++|+..++++++.. +++ ..++..++.++...|+++ +
T Consensus 500 ~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~---~~~~~~l~~~~~~~g~~~-~ 568 (597)
T 2xpi_A 500 NALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TND---ANVHTAIALVYLHKKIPG-L 568 (597)
T ss_dssp HHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCC---HHHHHHHHHHHHHTTCHH-H
T ss_pred HHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHhCCHH-H
Confidence 999875543 23454 37889999999999999999999999998753 333 457899999999999999 9
Q ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 016114 333 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD 367 (395)
Q Consensus 333 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 367 (395)
|..+|++++++ .+++ ..++..++.+|.
T Consensus 569 A~~~~~~~l~~-----~p~~---~~~~~~l~~~~~ 595 (597)
T 2xpi_A 569 AITHLHESLAI-----SPNE---IMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHH-----CTTC---HHHHHHHHHTTC
T ss_pred HHHHHHHHHhc-----CCCC---hHHHHHHHHHHh
Confidence 99999999986 2333 456777777653
No 33
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.96 E-value=1.8e-26 Score=189.05 Aligned_cols=270 Identities=20% Similarity=0.187 Sum_probs=228.4
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 016114 69 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 148 (395)
Q Consensus 69 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 148 (395)
....|++++|+.++++++++..+..+.++|..+.++..+|.++...|++++|+.++++++.+.+...+++++....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45689999999999999999999888888999999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhH
Q 016114 149 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 228 (395)
Q Consensus 149 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (395)
+|.++...|++++|+.++++++.+.++. .+++++....++.++|.++...|++++|+.++++++.+.....+++++..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKV--LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH--cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999998765 45566778889999999999999999999999999999988888888999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
..++.++|.++...|++++|+.++++++.+..... +...+.....+..++..+...+....+.. +..+..... ..+.
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 246 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYK-ACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHH-hcCC
Confidence 99999999999999999999999999999865543 33355566677777777776666655544 344444333 3456
Q ss_pred CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 308 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
+++....++..+|.++...|+++ +|..++++++++
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLE-AAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh
Confidence 77888999999999999999999 999999999864
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=209.11 Aligned_cols=313 Identities=12% Similarity=0.041 Sum_probs=232.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC-CCChhhhhhHHhH
Q 016114 29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSL 107 (395)
Q Consensus 29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l 107 (395)
..++.+.++..+++.+...... .+++..+..++.+|.++...|++++|++.|++|+++.+...+ ..++....++.++
T Consensus 23 ~l~~~~~~l~~~e~~~~~~~~~--~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl 100 (472)
T 4g1t_A 23 NLMEGENSLDDFEDKVFYRTEF--QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100 (472)
T ss_dssp CTTTTCCCHHHHHHHHHHHTTS--CC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 3456666777777666543332 234456778899999999999999999999999999877643 2367778899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhcccCCCCchH
Q 016114 108 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA--NGNAEEAVELYKKALRVIKDSNYMSLDDSI 185 (395)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (395)
|.+|..+|++++|+.++++++.+.+...++.++..+.++.++|.++.. .+++++|+.+|++++++ .|+++.
T Consensus 101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-------~p~~~~ 173 (472)
T 4g1t_A 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-------KPKNPE 173 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------STTCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-------CCCCHH
Confidence 999999999999999999999999887766677777888888877665 45799999999999986 345544
Q ss_pred HHHHHHHHHHH---HHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHH----HhhhcHHHHHHHHHHHHHH
Q 016114 186 MENMRIDLAEL---LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY----SRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 186 ~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~a~~~ 258 (395)
.. ..++.+ +...++.++|+..+++++++ +|....++..+|..+ ...|++++|..++++++..
T Consensus 174 ~~---~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~ 242 (472)
T 4g1t_A 174 FT---SGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK 242 (472)
T ss_dssp HH---HHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 33 445544 45568889999999999986 233334555565544 4557888999999999873
Q ss_pred HHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC----------
Q 016114 259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---------- 328 (395)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------- 328 (395)
+|....++.++|.+|...|++++|+..++++++.. |....++..+|.+|...+.
T Consensus 243 --------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 243 --------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--------PNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --------CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 56677889999999999999999999999998854 4445567788887754321
Q ss_pred ---------chhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 329 ---------DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 329 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
++ +|+..+++++++ +|....++..+|.++...|++++|+.+|++++.+.
T Consensus 307 ~~~~~~~~~~~-~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 307 YGKRKLLELIG-HAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp -CHHHHHHHHH-HHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhHH-HHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 23 455555555543 23345567888999999999999999999988653
No 35
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.96 E-value=9.1e-25 Score=186.27 Aligned_cols=312 Identities=11% Similarity=-0.014 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 94 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 94 (395)
..+.++..+|.++...|++++|+.++++++...+ ..+......++..+|.++...|++++|...+++++.+.....
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~- 87 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD- 87 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-
Confidence 3467778899999999999999999999988642 122334667888999999999999999999999999887642
Q ss_pred CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
+......++..+|.++...|++++|+.++++++.+.+...++.++....++.++|.++...|++++|..++++++.+..
T Consensus 88 -~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 88 -VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 3344566788999999999999999999999999988765444577788899999999999999999999999999865
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH--HHHHHHHHHhhhcHHHHHHHH
Q 016114 175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLL 252 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~ 252 (395)
.. .++....++.++|.++...|++++|..++++++.+..... .+..... ...++.++...|++++|..++
T Consensus 167 ~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 167 SY-----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp TS-----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cc-----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 42 1222456788999999999999999999999998764321 2211112 224556688999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114 253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332 (395)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (395)
++++... ..........+..++.++...|++++|...+++++...... +..+....++..++.++...|+++ +
T Consensus 239 ~~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~ 311 (373)
T 1hz4_A 239 RHTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKS-D 311 (373)
T ss_dssp HHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHH-H
T ss_pred HhCCCCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHH-H
Confidence 8886521 11112223456789999999999999999999999987663 223445568888999999999999 9
Q ss_pred HHHHHHHHHHHHHh
Q 016114 333 LLELLKRVLRIQER 346 (395)
Q Consensus 333 A~~~~~~al~~~~~ 346 (395)
|...+++++.+...
T Consensus 312 A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 312 AQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998764
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=7e-27 Score=195.69 Aligned_cols=288 Identities=14% Similarity=0.106 Sum_probs=231.4
Q ss_pred CCcH-HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114 11 DDEP-LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 89 (395)
Q Consensus 11 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 89 (395)
+++| .....++.+|..+...|++++|+.+|+++++.. |....++..+|.++...|++++|+..+++++..
T Consensus 14 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 84 (327)
T 3cv0_A 14 ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALNHARML- 84 (327)
T ss_dssp SSCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 3344 455667899999999999999999999998852 334567888999999999999999999999987
Q ss_pred HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH--------------HH-HHH
Q 016114 90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL--------------AH-AKC 154 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~ 154 (395)
.|....++..+|.++...|++++|+..+++++... +..+. .+..+ +. ++.
T Consensus 85 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 85 -------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQYEQ---LGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTTT---C--------------------CCTT
T ss_pred -------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHH---HHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 45567789999999999999999999999998762 22221 22222 44 578
Q ss_pred HCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHH
Q 016114 155 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 234 (395)
Q Consensus 155 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 234 (395)
..|++++|+.+++++++.. ++. ..++..+|.++...|++++|+.++++++.. .|....++..
T Consensus 150 ~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~ 211 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMN-------PND---AQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNK 211 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHS-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhC-------CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHH
Confidence 8899999999999998852 222 356788999999999999999999999875 2344567889
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC----Ch
Q 016114 235 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD----SL 310 (395)
Q Consensus 235 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~ 310 (395)
+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|...+++++.......++. ..
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 283 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence 999999999999999999999884 355667889999999999999999999999998763211111 11
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114 311 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 349 (395)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 349 (395)
....++..++.++...|+++ +|...++++++.+...++
T Consensus 284 ~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 284 ATRSMWDFFRMLLNVMNRPD-LVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-HHHHHTTCCSHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhcchhhh
Confidence 15678899999999999999 999999999988776544
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=2.6e-26 Score=192.24 Aligned_cols=284 Identities=16% Similarity=0.065 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 137 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 137 (395)
....+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 4456788999999999999999999999886 4566788899999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH----------HHHH-HH-HHHHcCChHH
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM----------RIDL-AE-LLHIVGRGQE 205 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~~~l-a~-~~~~~g~~~~ 205 (395)
.|....++..+|.++...|++++|+..+++++.... ........ ...+ +. ++...|++++
T Consensus 85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-------QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-------TTTTC--------------------CCTTSHHHHHH
T ss_pred -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 344456889999999999999999999999987532 22111100 0112 44 5888899999
Q ss_pred HHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC
Q 016114 206 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 285 (395)
Q Consensus 206 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 285 (395)
|+.++++++... |....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|
T Consensus 157 A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 157 CRTLLHAALEMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp HHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcC
Confidence 999999998752 334577889999999999999999999999874 3556678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH----HHHHHHHH
Q 016114 286 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKK 361 (395)
Q Consensus 286 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~ 361 (395)
++++|+..++++++.. ++ ...++..+|.++...|+++ +|+..+++++.+.....+.... ....++..
T Consensus 221 ~~~~A~~~~~~a~~~~-----~~---~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-----PG---YVRVMYNMAVSYSNMSQYD-LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291 (327)
T ss_dssp CHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-----CC---CHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence 9999999999998753 33 3457889999999999999 9999999999886542221111 15788999
Q ss_pred HHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 362 VVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 362 la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
++.++...|++++|...++++++..++.
T Consensus 292 l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 292 FRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999887764
No 38
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.95 E-value=3.5e-24 Score=182.61 Aligned_cols=313 Identities=12% Similarity=0.005 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
....+...+|.++...|++++|...+++++.... ..+......++..+|.++...|++++|...+++++.+.+..
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 86 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-- 86 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence 4456777889999999999999999999988631 11122345678899999999999999999999999998764
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.+......++.++|.++...|++++|+.++++++.+.... ..+.++....++.++|.++...|++++|..++++++.+
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2233456778899999999999999999999999998764 22333566777889999999999999999999999988
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH--HHHHHHHHhcCChHHHHHHH
Q 016114 217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--LHLGITLYHLNRDKEAEKLV 294 (395)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~ 294 (395)
..... ++....++..+|.++...|++++|..++++++.+.... ..+...... ..++.++...|++++|..++
T Consensus 165 ~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 165 LSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp TTTSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65432 22345778899999999999999999999998864332 122111121 24556688999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhh
Q 016114 295 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 374 (395)
Q Consensus 295 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 374 (395)
++++... ..........+..++.++...|+++ +|...+++++...... ...+....++..+|.++...|++++
T Consensus 239 ~~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 239 RHTAKPE----FANNHFLQGQWRNIARAQILLGEFE-PAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhCCCCC----CCcchhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHH
Confidence 9887532 1111222335678999999999999 9999999999987763 2234555688999999999999999
Q ss_pred hchhhHHHHHHHHHH
Q 016114 375 KFPLKKRLSNLRMKY 389 (395)
Q Consensus 375 A~~~~~~a~~~~~~~ 389 (395)
|...+++++.+.+..
T Consensus 312 A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 312 AQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999987754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.5e-24 Score=172.26 Aligned_cols=254 Identities=12% Similarity=0.026 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
..+..+..+|.++...|++++|+.++++++... ....++..+|.++...|++++|+.++++++.+.... +
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 456788999999999999999999999999872 346789999999999999999999999999987653 2
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
++.+....++..+|.++...|++++|+.++++++.+. +. +.++...|++++|+..+++++.
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-----------~~~~~~~~~~~~a~~~~~~~~~- 133 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-------RT-----------ADILTKLRNAEKELKKAEAEAY- 133 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CC-----------HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ch-----------hHHHHHHhHHHHHHHHHHHHHH-
Confidence 2334457899999999999999999999999999852 12 3567778899999999999887
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114 217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 296 (395)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 296 (395)
..|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++
T Consensus 134 -------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 134 -------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35778889999999999999999999999999984 355567899999999999999999999999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 016114 297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY 365 (395)
Q Consensus 297 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 365 (395)
+++.. + ....++..+|.++...|+++ +|..++++++++..+.. ..|....++..++.+
T Consensus 199 al~~~-----~---~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 199 AIEKD-----P---NFVRAYIRKATAQIAVKEYA-SALETLDAARTKDAEVN--NGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHC-----T---TCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred HHHhC-----H---HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence 98853 3 33467889999999999999 99999999999875532 234445555555543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.8e-24 Score=171.65 Aligned_cols=254 Identities=11% Similarity=0.034 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
+..+..+..+|.++...|++++|+.+|+++++.. +. ..++..+|.++...|++++|+..+++++.+.....
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 4567889999999999999999999999999873 11 35788999999999999999999999999865531
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
++.+....++..+|.++...|++++|+.++++++.+. +. +.++...|++++|+..+++++..
T Consensus 73 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--------~~~~~~~~~~~~a~~~~~~~~~~- 134 (258)
T 3uq3_A 73 -ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--------RT--------ADILTKLRNAEKELKKAEAEAYV- 134 (258)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC--------HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------ch--------hHHHHHHhHHHHHHHHHHHHHHc-
Confidence 2334447899999999999999999999999999862 21 35677778899999999998873
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
.+....++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+..++
T Consensus 135 ---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 135 ---------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 23446678999999999999999999999999862 3345788999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS 321 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 321 (395)
+++.. .|....++..+|.++...|++++|..++++++++..+.. ..|....+...++.
T Consensus 198 ~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 198 KAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred HHHHh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence 99884 455678899999999999999999999999999876542 33444444444443
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=1.4e-25 Score=182.70 Aligned_cols=251 Identities=9% Similarity=0.003 Sum_probs=208.2
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
..+...|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++. ++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~ 68 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-------VN 68 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-------SC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------cC
Confidence 46778999999999999999999999875 2333447889999999999999999999999872 23
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 261 (395)
++.....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++.+
T Consensus 69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 137 (272)
T 3u4t_A 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--- 137 (272)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence 444446678999999999999999999999999862 334467899999999999999999999998863
Q ss_pred hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC---chhHHHHHHH
Q 016114 262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLK 338 (395)
Q Consensus 262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~ 338 (395)
.|....++..+|......+++++|+..++++++.. +++ ..++..+|.++...|+ ++ +|+..++
T Consensus 138 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~~---~~~~~~~~~~~~~~~~~~~~~-~A~~~~~ 203 (272)
T 3u4t_A 138 -----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-----PNI---YIGYLWRARANAAQDPDTKQG-LAKPYYE 203 (272)
T ss_dssp -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHHSTTCSSC-TTHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ccc---hHHHHHHHHHHHHcCcchhhH-HHHHHHH
Confidence 56778889999944555569999999999998864 333 4678889999999998 88 8999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 339 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 339 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
+++++......+..+....++..+|.+|...|++++|+.+|++++++.|+....
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHH
Confidence 999998664332234456889999999999999999999999999998775543
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=8.2e-25 Score=184.32 Aligned_cols=256 Identities=9% Similarity=-0.042 Sum_probs=213.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAVEIYHRVITILE 90 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~ 90 (395)
.+|....++..+|.++...|++++|+..+++++.+ .|....+++.+|.++...|+ +++|+..|++++.+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence 46889999999999999999999999999999987 34556789999999999997 99999999999997
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
.|....+++++|.++...|++++|+..|++++.+ +|....++.++|.++...|++++|+.++++++
T Consensus 162 ------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 162 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6778899999999999999999999999999987 56667889999999999999999999999999
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh-
Q 016114 171 RVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEG-----RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK- 243 (395)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~- 243 (395)
++. ++. ..++.++|.++.. .|.+++| +.++++++.+ .|....++.+++.++...|
T Consensus 228 ~l~-------P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 228 KED-------VRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHC-------TTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCG
T ss_pred HhC-------CCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCc
Confidence 963 232 4577999999999 5665888 5889999886 3555678999999999988
Q ss_pred -cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HHHHHHHcCCCChHH
Q 016114 244 -NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--------R-DKEAEKLVLEA-LYIREIAFGKDSLPV 312 (395)
Q Consensus 244 -~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~ 312 (395)
++++|++.++++ + ..|....++..+|.+|..+| + +++|+.+|+++ ++ -+|..
T Consensus 290 ~~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r 352 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIR 352 (382)
T ss_dssp GGCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGG
T ss_pred cchHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchh
Confidence 688888877654 2 35677788899999999985 2 47888888776 54 23555
Q ss_pred HHHHHHHHHHHHHc
Q 016114 313 GEALDCLVSIQTRL 326 (395)
Q Consensus 313 ~~~~~~l~~~~~~~ 326 (395)
...|..++..+..+
T Consensus 353 ~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 353 KEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777666543
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=7.2e-25 Score=178.47 Aligned_cols=261 Identities=11% Similarity=0.037 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
..+...|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++.. +++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT 70 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence 35678899999999999999999999875 4555678999999999999999999999999873 2223
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
.....++..+|.++...|++++|+.+++++++.. +.. ..++..+|.++...|++++|+.++++++..
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence 3346789999999999999999999999999863 222 246789999999999999999999998764
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC---hHHHHHHHHH
Q 016114 220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLE 296 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 296 (395)
.|....++.++|......+++++|+..+++++++ .|....++..+|.++...|+ +++|+..+++
T Consensus 138 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 138 -----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 3455678889994444456999999999999984 45557788999999999999 9999999999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 016114 297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK 368 (395)
Q Consensus 297 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 368 (395)
++++......+.......++..+|.++...|+++ +|+.+|++++++ .|+++ .+...++.+...
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~-----~p~~~---~a~~~l~~~~~~ 267 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV-KADAAWKNILAL-----DPTNK---KAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH-----CTTCH---HHHHHHC-----
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc-----CccHH---HHHHHhhhhhcc
Confidence 9998755432222335578899999999999999 999999999986 24444 445555544433
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=2.5e-24 Score=181.38 Aligned_cols=255 Identities=11% Similarity=-0.062 Sum_probs=211.8
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC-hHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTK 133 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~ 133 (395)
.|....++..+|.++...|++++|+..+++++.+ .|....+++.+|.++...|+ +++|+..|++++.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--- 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--- 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---
Confidence 4678889999999999999999999999999987 67788999999999999997 99999999999987
Q ss_pred HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114 134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 213 (395)
Q Consensus 134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (395)
+|....++.++|.++...|++++|+..|++++++. ++. ..++.++|.++...|++++|+.+++++
T Consensus 162 -----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-------P~~---~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 162 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKN---YHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56667889999999999999999999999999863 233 457799999999999999999999999
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHH-----HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC--
Q 016114 214 LLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEA-----ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-- 285 (395)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 285 (395)
+++ +|....+++++|.++.. .|.+++| +.++++++.+ +|....++.+++.++...|
T Consensus 227 l~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 227 LKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLS 290 (382)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGG
T ss_pred HHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCcc
Confidence 986 45667889999999999 5555777 5889998884 5677789999999999988
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC---------chhHHHHHHHHH-HHHHHhccCCCCHHH
Q 016114 286 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---------DDTKLLELLKRV-LRIQEREFGSESEEV 355 (395)
Q Consensus 286 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~A~~~~~~a-l~~~~~~~~~~~~~~ 355 (395)
++++|++.++++ + ..|....++..+|.++...|+ .+ +|+.+|+++ ++ .+|..
T Consensus 291 ~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~-~A~~~~~~l~~~--------~DP~r 352 (382)
T 2h6f_A 291 KYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILN-KALELCEILAKE--------KDTIR 352 (382)
T ss_dssp GCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH-HHHHHHHHHHHT--------TCGGG
T ss_pred chHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHHHHH--------hCchh
Confidence 688988877664 2 223444578899999998752 24 677777765 43 35666
Q ss_pred HHHHHHHHHHHHHh
Q 016114 356 MLTLKKVVSYLDKL 369 (395)
Q Consensus 356 ~~~~~~la~~~~~~ 369 (395)
...|..++..+..+
T Consensus 353 ~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 353 KEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888877654
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1e-24 Score=170.55 Aligned_cols=200 Identities=18% Similarity=0.174 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|..+.+++.+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----- 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR----- 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 444567889999999999999999999999875 3445678899999999999999999999999987
Q ss_pred CCCChhhhhhHHhHHHHHHHc-----------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKE-----------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA 162 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 162 (395)
.|....++..+|.++... |++++|+..+++++++ +|....++.++|.++...|++++|
T Consensus 69 ---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 69 ---TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHH
Confidence 577788999999999999 9999999999999987 455567889999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q 016114 163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 242 (395)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 242 (395)
+..|++++++. +. ..++.++|.++...|++++|+..|++++++ +|....++.++|.++...
T Consensus 138 ~~~~~~al~~~--------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 138 EASLKQALALE--------DT---PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHHC--------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhcc--------cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHc
Confidence 99999999963 22 456689999999999999999999999986 355567888999999999
Q ss_pred hcHHHHHHHHHHHH
Q 016114 243 KNFVEAERLLRICL 256 (395)
Q Consensus 243 ~~~~~A~~~~~~a~ 256 (395)
|++++|+..++++-
T Consensus 199 g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 199 GKAEEAARAAALEH 212 (217)
T ss_dssp --------------
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 46
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=1.1e-22 Score=179.51 Aligned_cols=296 Identities=11% Similarity=0.045 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHHHH
Q 016114 17 DAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITI 88 (395)
Q Consensus 17 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 88 (395)
+.+++.+|.+|.. .+++++|+.+|+++.+. . ...++..+|.+|.. .+++++|+.+|+++.+.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4567778888887 88888888888887652 1 13456667777777 67777777777777542
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHH
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAE 160 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 160 (395)
....++..+|.+|.. .+++++|+.+|+++.+. ++ ..++..+|.+|.. .++++
T Consensus 145 ----------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 145 ----------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH
T ss_pred ----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHH
Confidence 124556666666666 66666666666666542 11 2345555555555 55555
Q ss_pred HHHHHHHHHHHHHHhc------------cc---------------CCCCchHHHHHHHHHHHHHHH----cCChHHHHHH
Q 016114 161 EAVELYKKALRVIKDS------------NY---------------MSLDDSIMENMRIDLAELLHI----VGRGQEGREL 209 (395)
Q Consensus 161 ~A~~~~~~a~~~~~~~------------~~---------------~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 209 (395)
+|+.+|+++.+..... .. ....+ ..++.++|.+|.. .+++++|+.+
T Consensus 205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 5555555554310000 00 00000 1234555666655 5666666666
Q ss_pred HHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc
Q 016114 210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 284 (395)
Q Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 284 (395)
|+++.+. . ...++..+|.+|... +++++|+.+|+++.+. ....++..+|.+|...
T Consensus 282 ~~~a~~~-------~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 282 YRKSAEQ-------G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----------GDATAQANLGAIYFRL 341 (490)
T ss_dssp HHHHHTT-------T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHS
T ss_pred HHHHHHc-------C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Confidence 6655431 1 123566677777766 6777777777777651 1235677788888775
Q ss_pred C---ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114 285 N---RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVML 357 (395)
Q Consensus 285 g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 357 (395)
| ++++|+.+|+++++. ++ ..++..||.++.. .++++ +|+.+|+++++. .+ ..
T Consensus 342 g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~A~~~-------~~---~~ 400 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKKDEQ-QAAIWMRKAAEQ-------GL---SA 400 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHT-------TC---HH
T ss_pred CCcccHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHhC-------CC---HH
Confidence 5 777888888887752 22 3568899999998 78888 999999998862 22 46
Q ss_pred HHHHHHHHHHH----hcchhhhchhhHHHHHHH
Q 016114 358 TLKKVVSYLDK----LGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 358 ~~~~la~~~~~----~g~~~~A~~~~~~a~~~~ 386 (395)
++..||.+|.. .+++++|..+|+++++..
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 78899999998 899999999999999988
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=4.3e-24 Score=167.03 Aligned_cols=197 Identities=17% Similarity=0.113 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
..++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 457889999999999999999999999875 6778889999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHH
Q 016114 139 DGRVGMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 207 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (395)
.|....++.++|.++... |++++|+..+++++++. |+. ..++.++|.++...|++++|+
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~---~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRY---APLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------ccc---HHHHHHHHHHHHHcCChHHHH
Confidence 455667899999999999 99999999999999862 333 356689999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCCh
Q 016114 208 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 287 (395)
Q Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 287 (395)
..|++++++. ....++.++|.++...|++++|+..|++++.+ +|....++..+|.++...|++
T Consensus 139 ~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 139 ASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred HHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence 9999999872 23567889999999999999999999999984 566778899999999999999
Q ss_pred HHHHHHHHHHH
Q 016114 288 KEAEKLVLEAL 298 (395)
Q Consensus 288 ~~A~~~~~~al 298 (395)
++|+..++++-
T Consensus 202 ~~A~~~~~~~~ 212 (217)
T 2pl2_A 202 EEAARAAALEH 212 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 48
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=4e-22 Score=175.93 Aligned_cols=290 Identities=14% Similarity=0.083 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHHH
Q 016114 16 LDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVIT 87 (395)
Q Consensus 16 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~ 87 (395)
.+.+++.+|.+|.. .+++++|+.+|+++.+. . ...+++.+|.+|.. .+++++|+.+|+++.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 35678899999998 89999999999999763 1 24578899999999 9999999999999976
Q ss_pred HHHHhcCCCChhhhhhHHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCH
Q 016114 88 ILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNA 159 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~ 159 (395)
. ....++..+|.+|.. .+++++|+.+|+++.+. ++ ..++.++|.+|.. .+++
T Consensus 108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCH
Confidence 3 245678899999999 89999999999998763 22 4678899999998 8999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH
Q 016114 160 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 235 (395)
Q Consensus 160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 235 (395)
++|+.+|+++.+. .+ ..++..+|.+|.. .+++++|+.+|+++.+. .+ ..++..+
T Consensus 168 ~~A~~~~~~a~~~---------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l 225 (490)
T 2xm6_A 168 VMAREWYSKAAEQ---------GN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------GD---ELGQLHL 225 (490)
T ss_dssp HHHHHHHHHHHHT---------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHH
T ss_pred HHHHHHHHHHHHC---------CC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHH
Confidence 9999999999863 11 3456788888888 78899999988887652 11 2345566
Q ss_pred HHHHHh----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHcCC
Q 016114 236 AASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGK 307 (395)
Q Consensus 236 a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 307 (395)
|.+|.. .+++++|+.+|+++.+. ....++..+|.+|.. .+++++|+.+|+++.+.
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------- 288 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------- 288 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------
Confidence 666664 56666666666665531 112344455555554 55555555555554431
Q ss_pred CChH----------------------------------HHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHHhccCC
Q 016114 308 DSLP----------------------------------VGEALDCLVSIQTRLG---EDDTKLLELLKRVLRIQEREFGS 350 (395)
Q Consensus 308 ~~~~----------------------------------~~~~~~~l~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~ 350 (395)
.++. ...++..+|.++...| +++ +|+.+|+++++.
T Consensus 289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~-~A~~~~~~a~~~------- 360 (490)
T 2xm6_A 289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHK-KAVEWFRKAAAK------- 360 (490)
T ss_dssp TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHH-HHHHHHHHHHHT-------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHH-HHHHHHHHHHHC-------
Confidence 1111 1123445555555443 334 555555555431
Q ss_pred CCHHHHHHHHHHHHHHHH----hcchhhhchhhHHHHHH
Q 016114 351 ESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 351 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 385 (395)
.+ ..++..||.+|.. .+++++|+.+|+++++.
T Consensus 361 ~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 361 GE---KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 12 3456667777776 66777777777776654
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=8.5e-22 Score=160.81 Aligned_cols=280 Identities=13% Similarity=0.015 Sum_probs=212.1
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHH-HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhH
Q 016114 26 MYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 104 (395)
Q Consensus 26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 104 (395)
-.+..|+|.+|+..+++... .+|. .......++.+|...|++++|+..++. ..+....++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------~~~~~~~a~ 68 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------SSAPELQAV 68 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------cCChhHHHH
Confidence 45668999999998876432 2233 345667789999999999999975543 133456788
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114 105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184 (395)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 184 (395)
..++..+...++.++|+..+++.+.. ..+|....++..+|.++...|++++|+..+++ ++.
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------~~~- 129 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------GDS- 129 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------CCS-
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------CCC-
Confidence 88999999999999999999988753 11455567789999999999999999999886 122
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC
Q 016114 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 264 (395)
Q Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 264 (395)
..++..+|.++...|++++|+..+++++... +++. .......+..++...|++++|...|+++++.
T Consensus 130 --~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------ 195 (291)
T 3mkr_A 130 --LECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK------ 195 (291)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------
Confidence 3456889999999999999999999998762 2221 1111111223444569999999999999883
Q ss_pred CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114 265 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 344 (395)
Q Consensus 265 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 344 (395)
.|....++.++|.++...|++++|+..+++++... |++ ..++.++|.++...|+..+.+..++++++++
T Consensus 196 --~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~---~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~- 264 (291)
T 3mkr_A 196 --CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-----SGH---PETLINLVVLSQHLGKPPEVTNRYLSQLKDA- 264 (291)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Confidence 45677889999999999999999999999999854 444 4568899999999999973467899999876
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhh
Q 016114 345 EREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 379 (395)
Q Consensus 345 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 379 (395)
.|++|.... +..+.+.++++..-|
T Consensus 265 ----~P~~~~~~d-------~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 265 ----HRSHPFIKE-------YRAKENDFDRLVLQY 288 (291)
T ss_dssp ----CTTCHHHHH-------HHHHHHHHHHHHHHH
T ss_pred ----CCCChHHHH-------HHHHHHHHHHHHHHc
Confidence 466775543 455566666665544
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=2.2e-21 Score=157.84 Aligned_cols=225 Identities=15% Similarity=0.179 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHHHHH
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITIL 89 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~ 89 (395)
|..+.+++.+|.++...|++++|+.+|+++++. ++ ..++..+|.++.. .+++++|+.+|+++++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence 455678899999999999999999999999871 22 3578899999999 99999999999999875
Q ss_pred HHhcCCCChhhhhhHHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHH
Q 016114 90 ELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEE 161 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 161 (395)
....++..+|.++.. .+++++|+.+|+++++. + ...++.++|.+|.. .+++++
T Consensus 72 ---------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 72 ---------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp ---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ---------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHH
Confidence 146788999999999 99999999999999874 2 24678999999999 999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114 162 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 237 (395)
Q Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 237 (395)
|+.+++++++. + + ..++.++|.++.. .+++++|+.+++++++. .+ ..++.++|.
T Consensus 133 A~~~~~~a~~~-------~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~ 190 (273)
T 1ouv_A 133 AVEYFTKACDL-------N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGN 190 (273)
T ss_dssp HHHHHHHHHHT-------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred HHHHHHHHHhc-------C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHH
Confidence 99999999873 1 1 3456889999999 99999999999999864 12 357889999
Q ss_pred HHHh----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 016114 238 SYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI 300 (395)
Q Consensus 238 ~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 300 (395)
+|.. .+++++|+.+++++++. . + ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 9999 99999999999999872 1 2 5678999999999 99999999999999885
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=3.6e-21 Score=156.58 Aligned_cols=229 Identities=14% Similarity=0.061 Sum_probs=195.2
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI 173 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~ 173 (395)
|..+.++..+|.++...|++++|+.+|+++++. ++ ..++..+|.++.. .+++++|+.+|+++++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence 445678899999999999999999999999861 23 3578899999999 99999999999999874
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh----hhcH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNF 245 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~ 245 (395)
+ ...++.++|.+|.. .+++++|+.+++++++. . ...++.++|.+|.. .+++
T Consensus 72 --------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 72 --------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp --------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred --------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCH
Confidence 1 14567899999999 99999999999999874 1 34678899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114 246 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS 321 (395)
Q Consensus 246 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 321 (395)
++|+.+++++++. . ...++..+|.++.. .+++++|+.+++++++. ++ ..++..+|.
T Consensus 131 ~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~ 190 (273)
T 1ouv_A 131 KKAVEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGN 190 (273)
T ss_dssp HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHH
Confidence 9999999999872 2 34678899999998 99999999999999863 22 356889999
Q ss_pred HHHH----cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH----hcchhhhchhhHHHHHHHHHH
Q 016114 322 IQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 322 ~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~ 389 (395)
++.. .++++ +|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|++++++.+..
T Consensus 191 ~~~~g~~~~~~~~-~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 191 MYHHGEGATKNFK-EALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHTCSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHcCCCCCccHH-HHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 9999 99999 999999999874 22 4678999999999 999999999999999987654
No 52
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.90 E-value=4.1e-21 Score=158.60 Aligned_cols=249 Identities=10% Similarity=0.060 Sum_probs=197.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHh-c--CcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhH
Q 016114 28 STLENYEKSMLVYQRVINVLESR-Y--GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 104 (395)
Q Consensus 28 ~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 104 (395)
+..|++++|..+++++.+..... + .++.......+...|.+|...|++++|+..|.+++.+..... +....+.++
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~ 79 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAF 79 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 35789999999999998876531 2 345556777788889999999999999999999999987753 455678899
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114 105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184 (395)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 184 (395)
.++|.+|..+|++++|+.+|++++.+.... .+....+.++.++|.+|.. |++++|+.+|++++++.+.. .+..
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~----~~~~ 152 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE----ERLR 152 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC----CChh
Confidence 999999999999999999999999998753 2233467889999999999 99999999999999998753 3445
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC
Q 016114 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 264 (395)
Q Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 264 (395)
....++.++|.++...|++++|+.+|++++.+..... ..+.....+..+|.++...|++++|+.+|++++ +....
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~-- 227 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF-- 227 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC--
Confidence 5677889999999999999999999999999877643 234455688899999999999999999999998 42111
Q ss_pred CCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114 265 PDDQSISFPMLHLGITLYHLNRDKEAEK 292 (395)
Q Consensus 265 ~~~~~~~~~~~~la~~~~~~g~~~~A~~ 292 (395)
........+..++..+ ..|+.+.+..
T Consensus 228 -~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 228 -SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp -TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1122233455666655 5677655444
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=4.4e-22 Score=162.50 Aligned_cols=261 Identities=12% Similarity=0.020 Sum_probs=201.8
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh-hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114 67 KVLGSIGRAKKAVEIYHRVITILELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145 (395)
Q Consensus 67 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 145 (395)
...+..|+|.+|+..+++... .+|.. ......++.+|...|++++|+..++. ..+....+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------~~~~~~~a 67 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------SSAPELQA 67 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------TSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------cCChhHHH
Confidence 445678999999988876432 23443 45677889999999999999876643 13445678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 225 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (395)
+..++..+...|++++|+..+++++... ..|+. ..++..+|.++...|++++|+..+++
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~-----~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~------------- 126 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRS-----VDVTN---TTFLLMAASIYFYDQNPDAALRTLHQ------------- 126 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSC-----CCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTT-------------
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcc-----cCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhC-------------
Confidence 8899999999999999999999987620 12333 34568899999999999999999876
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHH--HHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~ 303 (395)
|....++..+|.++..+|++++|+..+++++.. +|....... .+..++...|++++|...|+++++..
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-- 196 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-- 196 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--
Confidence 233457888999999999999999999999874 122222211 12234445699999999999998753
Q ss_pred HcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhh-hchhhHHH
Q 016114 304 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE-KFPLKKRL 382 (395)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a 382 (395)
|+ ...++..+|.++...|+++ +|+..|++++.. +|+...++.++|.++...|++++ +..+++++
T Consensus 197 ---p~---~~~~~~~la~~~~~~g~~~-eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 197 ---SP---TLLLLNGQAACHMAQGRWE-AAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp ---CC---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ---CC---cHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33 3457889999999999999 999999999985 24445678999999999999976 57899999
Q ss_pred HHHHHHHHhh
Q 016114 383 SNLRMKYKQK 392 (395)
Q Consensus 383 ~~~~~~~~~~ 392 (395)
+++.|++...
T Consensus 262 ~~~~P~~~~~ 271 (291)
T 3mkr_A 262 KDAHRSHPFI 271 (291)
T ss_dssp HHHCTTCHHH
T ss_pred HHhCCCChHH
Confidence 9988776543
No 54
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.89 E-value=3.2e-21 Score=158.04 Aligned_cols=222 Identities=13% Similarity=0.035 Sum_probs=170.8
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 145 (395)
|.++...|++++|+..|.+++.+..... +.+..+.++.++|.+|...|++++|+.+|++++.+.... .+....+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~ 119 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF 119 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 5677889999999999999999987653 445668899999999999999999999999999998764 233446778
Q ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114 146 MCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 146 ~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (395)
+.++|.+|... |++++|+.+|++++++.+.. .+......++.++|.++...|++++|+.+|++++.+..... ..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~ 194 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LS 194 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-TT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-cc
Confidence 99999999996 99999999999999998652 23444567789999999999999999999999998642211 00
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEALY 299 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~ 299 (395)
......++.++|.++...|++++|+..+++++.+..... .......+..++..+. ..+++++|+..|++++.
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 113445788999999999999999999999987432221 1112334556666664 45678888887766543
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.89 E-value=1.4e-21 Score=160.25 Aligned_cols=226 Identities=9% Similarity=-0.044 Sum_probs=174.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114 150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 229 (395)
Q Consensus 150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (395)
|.+|...|++++|+..|++++++..+. .+++....++.++|.+|...|++++|+.++++++.+..... +....+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a 117 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKA----GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRGA 117 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHHHH
Confidence 567788999999999999999998764 35566678899999999999999999999999999987643 334457
Q ss_pred HHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114 230 THLLNLAASYSRS-KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 308 (395)
Q Consensus 230 ~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 308 (395)
.++.++|.+|... |++++|+.+|++++.+.... .+......++.++|.++..+|++++|+.+|++++.+.... +.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 193 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN--RL 193 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC--TT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--Cc
Confidence 7899999999996 99999999999999987643 1222345678999999999999999999999999864211 01
Q ss_pred -ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH--HhcchhhhchhhHHHHHH
Q 016114 309 -SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD--KLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 309 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~ 385 (395)
.......+..+|.++...|+++ +|+.+|++++++..... .......+..++..+. ..+++++|+..|++++.+
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAV-AAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHH-HHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1134457889999999999999 99999999987543321 1112334556677665 457799999999888666
Q ss_pred HHHH
Q 016114 386 RMKY 389 (395)
Q Consensus 386 ~~~~ 389 (395)
.+..
T Consensus 270 ~~~~ 273 (292)
T 1qqe_A 270 DKWK 273 (292)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 5554
No 56
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.89 E-value=4.4e-21 Score=158.39 Aligned_cols=246 Identities=9% Similarity=-0.011 Sum_probs=190.4
Q ss_pred cCChHHHHHHHHHHHHHHHHH-h--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114 114 EGKAVDAESVFSRILKIYTKV-Y--GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 190 (395)
Q Consensus 114 ~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (395)
.|++++|..+++++.+..... + +++.......+...|.+|...|++++|+..|.+++++..+. .+......++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~a~~~ 79 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN----RSLFHAAKAF 79 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHH
Confidence 467778888888877665421 1 12333345566677889999999999999999999998764 3556677889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 270 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 270 (395)
.++|.+|...|++++|+.+|++++.+..... +......++.++|.+|.. |++++|+.+|++++.+.... .+....
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~ 154 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQA 154 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHH
Confidence 9999999999999999999999999986543 334567889999999999 99999999999999987653 223345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS 350 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 350 (395)
..++.++|.++..+|++++|+.+|++++.+.... +..+.....+..++.++...|+++ +|+.+|++++ +.... .
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~-~A~~~~~~al-~~p~~-~- 228 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYV-AAQKCVRESY-SIPGF-S- 228 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHT-TSTTS-T-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHh-CCCCC-C-
Confidence 6789999999999999999999999999988664 233445667889999999999999 9999999998 54331 1
Q ss_pred CCHHHHHHHHHHHHHHHHhcchhhhc
Q 016114 351 ESEEVMLTLKKVVSYLDKLGRKEEKF 376 (395)
Q Consensus 351 ~~~~~~~~~~~la~~~~~~g~~~~A~ 376 (395)
.......+..++..+ ..|+.+.+.
T Consensus 229 -~~~e~~~l~~l~~~~-~~~d~~~~~ 252 (307)
T 2ifu_A 229 -GSEDCAALEDLLQAY-DEQDEEQLL 252 (307)
T ss_dssp -TSHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred -CCHHHHHHHHHHHHH-HhcCHHHHH
Confidence 123344566667666 456654443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=1.7e-21 Score=155.60 Aligned_cols=220 Identities=15% Similarity=0.199 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 94 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 94 (395)
..+..++.+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+..+++++..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 34677889999999999999999999999874 2333567889999999999999999999999986
Q ss_pred CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
.|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.+++++++..
T Consensus 87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 155 (243)
T 2q7f_A 87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN- 155 (243)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 45567889999999999999999999999999862 3334578899999999999999999999999863
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114 175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 254 (395)
++. ..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..++++
T Consensus 156 ------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 156 ------END---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp ------TTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred ------Ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 222 346688999999999999999999999875 233456788999999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHHhc
Q 016114 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHL 284 (395)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 284 (395)
++++ .|....++..++.+....
T Consensus 219 ~~~~--------~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 219 AIDI--------QPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHH--------CTTCHHHHHHHTC-----
T ss_pred HHcc--------CcchHHHHHHHHHHHhhc
Confidence 9884 344555556655554433
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=5.8e-20 Score=147.60 Aligned_cols=205 Identities=12% Similarity=0.062 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
..+.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------ 100 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS------ 100 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Confidence 34888999999999999999999999999986 3556788999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.|....++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.++++++..
T Consensus 101 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 101 --DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ--------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 234456789999999999999999999999876 1123334567789999999999999999999999875
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114 217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 296 (395)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 296 (395)
. |....++..+|.++...|++++|...+++++. ..|.....+..++.++...|++++|..++++
T Consensus 171 ~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 171 N--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQ--------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp C--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2 33356788999999999999999999999876 2455667888999999999999999999999
Q ss_pred HHHHH
Q 016114 297 ALYIR 301 (395)
Q Consensus 297 al~~~ 301 (395)
+++..
T Consensus 235 ~~~~~ 239 (252)
T 2ho1_A 235 LKRLY 239 (252)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 98754
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=1.9e-21 Score=155.31 Aligned_cols=203 Identities=14% Similarity=0.168 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
..+..+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 45677889999999999999999999999874 4566788999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.|....++..+|.++...|++++|+.+++++++.. +.. ..++..+|.++...|++++|+.++++++..
T Consensus 87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-------MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445788999999999999999999999999863 222 345688999999999999999999999876
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114 217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 296 (395)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 296 (395)
. |....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..++++
T Consensus 155 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 155 N--------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp C--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred C--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2 334567889999999999999999999999874 345567889999999999999999999999
Q ss_pred HHHHH
Q 016114 297 ALYIR 301 (395)
Q Consensus 297 al~~~ 301 (395)
+++..
T Consensus 219 ~~~~~ 223 (243)
T 2q7f_A 219 AIDIQ 223 (243)
T ss_dssp HHHHC
T ss_pred HHccC
Confidence 98854
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=5.9e-21 Score=166.96 Aligned_cols=222 Identities=15% Similarity=0.106 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCch-hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH
Q 016114 35 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 113 (395)
Q Consensus 35 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (395)
.....+++++........ ..+..+.++..+|.++...|++ ++|+..|++++++ .|....++..+|.+|..
T Consensus 79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence 444555566655544322 2345677899999999999999 9999999999987 56677899999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114 114 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMSLDDS 184 (395)
Q Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 184 (395)
.|++++|+.+|++++++ .|. ..++.++|.++... |++++|+..+++++++. ++.
T Consensus 150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~- 212 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLD- 212 (474)
T ss_dssp HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTC-
T ss_pred cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCC-
Confidence 99999999999999976 244 48899999999999 99999999999999863 233
Q ss_pred HHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 185 IMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 185 ~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
..++.++|.++... |++++|+..|++++.+.. ..+....++.++|.++...|++++|+..|++++
T Consensus 213 --~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 213 --GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR-----KASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG-----GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678999999999 999999999999998721 111667889999999999999999999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114 257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 297 (395)
.+ .|....++..++.++...|++++|+..+.+.
T Consensus 286 ~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 286 AL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 84 4666788999999999999999998876543
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=1.5e-20 Score=153.08 Aligned_cols=258 Identities=14% Similarity=0.040 Sum_probs=196.5
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114 66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145 (395)
Q Consensus 66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 145 (395)
+......|++++|+..+++++... ..++|....++..+|.++...|++++|+.+|++++.. .|....+
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~ 79 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEV 79 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHH
Confidence 344456689999999999988751 1235678889999999999999999999999999987 3444568
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 225 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (395)
+..+|.++...|++++|+.++++++++. +.. ..++..+|.++...|++++|+.++++++.+. +++
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~ 144 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PND 144 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-------ccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC
Confidence 8999999999999999999999999863 222 3567899999999999999999999999862 223
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 305 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 305 (395)
+ .....+ .+....|++++|...+++++... +.. .. ...++.++...++.++|+..+++++......
T Consensus 145 ~---~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~- 210 (275)
T 1xnf_A 145 P---FRSLWL-YLAEQKLDEKQAKEVLKQHFEKS-----DKE---QW-GWNIVEFYLGNISEQTLMERLKADATDNTSL- 210 (275)
T ss_dssp H---HHHHHH-HHHHHHHCHHHHHHHHHHHHHHS-----CCC---ST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-
T ss_pred h---HHHHHH-HHHHHhcCHHHHHHHHHHHHhcC-----Ccc---hH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccc-
Confidence 2 222222 34467799999999999888731 222 11 2457788889999999999999887754321
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhh
Q 016114 306 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 379 (395)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 379 (395)
.+....++..+|.++...|+++ +|+.+|++++.+ .+.+ ....+.++...|++++|+..+
T Consensus 211 ---~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~-----~p~~------~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 ---AEHLSETNFYLGKYYLSLGDLD-SATALFKLAVAN-----NVHN------FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----CCTT------CHHHHHHHHHHHHHHHC----
T ss_pred ---cccccHHHHHHHHHHHHcCCHH-HHHHHHHHHHhC-----Cchh------HHHHHHHHHHHHHHHhhHHHH
Confidence 1344678899999999999999 999999999864 2222 123367888899999999887
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=7.1e-21 Score=145.07 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114 187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 266 (395)
..+|.++|.+|...|++++|+..|++++++ +|....++..+|.++...|++++|+..+.+++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 457899999999999999999999999986 3556678999999999999999999999998873
Q ss_pred CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
.|....++..+|.++...++++.|...+.+++... ++ ...++..+|.++...|+++ +|+..|++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-----~~---~~~~~~~lg~~~~~~g~~~-~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-----TV---YADAYYKLGLVYDSMGEHD-KAIEAYEKTISI--- 136 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH---
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cc---chHHHHHHHHHHHHhCCch-hHHHHHHHHHHh---
Confidence 45667788999999999999999999999998753 33 3457889999999999999 999999999986
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 347 EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 347 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
+|....++..+|.+|..+|++++|+..|++++++.|+..
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 244467899999999999999999999999999988753
No 63
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=3.6e-20 Score=149.49 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=181.3
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
.+.....+..+|..+...|++++|+..|+++++. .|+++....++..+|.++...|++++|+..|++++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~- 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY- 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-
Confidence 3445678899999999999999999999999874 45565667788999999999999999999999999863
Q ss_pred hhhCCCChhHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH--------------HH
Q 016114 219 KYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--------------LH 276 (395)
Q Consensus 219 ~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~ 276 (395)
++++....++..+|.++.. .|++++|+..|++++... ++++....+. ..
T Consensus 83 ----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 83 ----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp ----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999 999999999999998842 4455555554 88
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc----------CCchhHHHHHHHHHHHHHHh
Q 016114 277 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----------GEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 277 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~al~~~~~ 346 (395)
+|.+|...|++++|+..|+++++.. |+++....++..+|.++... |+++ +|+..|+++++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~-~A~~~~~~~~~~~-- 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYR-RAVELYERLLQIF-- 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHHC--
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHH-HHHHHHHHHHHHC--
Confidence 9999999999999999999999864 56666778899999999977 7778 9999999999863
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcchhhhchhh
Q 016114 347 EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 379 (395)
Q Consensus 347 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 379 (395)
|+++....+...++.++...++++++..+.
T Consensus 226 ---p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 226 ---PDSPLLRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp ---TTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 667888889999999999999998887654
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=1.4e-19 Score=142.63 Aligned_cols=206 Identities=11% Similarity=0.014 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
.|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---- 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence 4566788999999999999999999999999986 3455778999999999999999999999999986
Q ss_pred hCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 213 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (395)
.|....++..+|.++... |++++|+.+++++++ . +..+....++..+|.++...|++++|+.+++++
T Consensus 72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344456789999999999 999999999999987 1 223333566789999999999999999999999
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHHHhcCChHHHHH
Q 016114 214 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEK 292 (395)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 292 (395)
+... |....++..+|.++...|++++|...+++++... | .....+..++.++...|+.++|..
T Consensus 140 ~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 140 LAAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 8752 3345678899999999999999999999998742 3 445567788889999999999999
Q ss_pred HHHHHHHH
Q 016114 293 LVLEALYI 300 (395)
Q Consensus 293 ~~~~al~~ 300 (395)
+++.+...
T Consensus 204 ~~~~~~~~ 211 (225)
T 2vq2_A 204 YEAQLQAN 211 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887664
No 65
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=5.3e-20 Score=147.80 Aligned_cols=207 Identities=13% Similarity=0.046 Sum_probs=176.7
Q ss_pred CcHHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 12 DEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 12 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
.+|.. +.++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+..+++++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 100 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKALAS-- 100 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 34554 8899999999999999999999999998862 233567889999999999999999999999986
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
.|....++..+|.++...|++++|+.++++++. .+..|....++..+|.++...|++++|+.++++++
T Consensus 101 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 101 ------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345577899999999999999999999999886 12456777889999999999999999999999998
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHH
Q 016114 171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 250 (395)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 250 (395)
+.. +.. ..++..+|.++...|++++|+.++++++.. .|.....+..++.++...|++++|..
T Consensus 169 ~~~-------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 169 RLN-------RNQ---PSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HHC-------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcC-------ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 852 222 345688999999999999999999998763 23345667889999999999999999
Q ss_pred HHHHHHHH
Q 016114 251 LLRICLDI 258 (395)
Q Consensus 251 ~~~~a~~~ 258 (395)
++++++..
T Consensus 231 ~~~~~~~~ 238 (252)
T 2ho1_A 231 YGLQLKRL 238 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=5.7e-21 Score=173.28 Aligned_cols=176 Identities=21% Similarity=0.273 Sum_probs=157.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
...|..+.+++++|.++..+|++++|+.+|++++++ .|....++.++|.++...|++++|+..|++++++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-- 72 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-- 72 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 357889999999999999999999999999999987 2445678999999999999999999999999997
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
.|....++.++|.++..+|++++|+..|++++++ +|....++.++|.++...|++++|+..|++++
T Consensus 73 ------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 73 ------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778899999999999999999999999999987 56667899999999999999999999999999
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114 171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 220 (395)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (395)
++ .|+. ..++.++|.++...|++++|++.+++++++....
T Consensus 139 ~l-------~P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 139 KL-------KPDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HH-------CSCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred Hh-------CCCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 86 2333 4567899999999999999999999999987654
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=1.6e-20 Score=143.05 Aligned_cols=167 Identities=17% Similarity=0.225 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+.+|+.+|.+|...|++++|+..|++++++ +|....++..+|.++...|++++|+..+.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 4567899999999999999999999999986 2444678999999999999999999999999876
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|....++..+|.++...++++.|...+.+++.. .|....++..+|.++...|++++|+..|++++++.
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-- 137 (184)
T 3vtx_A 69 -DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-- 137 (184)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--
Confidence 4566778899999999999999999999999886 34455678899999999999999999999999862
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
|+. ..++.++|.+|...|++++|+..|++++++
T Consensus 138 -----p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 -----PGF---IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----chh---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 333 456789999999999999999999999985
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=2.5e-20 Score=150.47 Aligned_cols=210 Identities=15% Similarity=0.105 Sum_probs=176.8
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
.|..+..++.+|..++..|++++|+..|++++.. .++++....+++.+|.++...|++++|+..|++++..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---- 81 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI---- 81 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----
Confidence 3445677899999999999999999999999875 3455566788999999999999999999999999987
Q ss_pred cCCCChhhhhhHHhHHHHHHH--------cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH--------------HHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIK--------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAM--------------CSLA 150 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la 150 (395)
.++++....+++.+|.++.. .|++++|+..|++++... |+++....+. ..+|
T Consensus 82 -~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 82 -YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999 999999999999999873 4455554454 8899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHhh
Q 016114 151 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----------GRGQEGRELLEECLLITEKY 220 (395)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~ 220 (395)
.+|...|++++|+..|+++++. .|+++....++..+|.+|... |++++|+..+++++...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--- 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDA-------YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--- 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHccCHHHHHHHHHHHHHH-------CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---
Confidence 9999999999999999999985 345555667789999999977 89999999999998863
Q ss_pred hCCCChhHHHHHHHHHHHHHhhhcHHHHH
Q 016114 221 KGKEHPSFVTHLLNLAASYSRSKNFVEAE 249 (395)
Q Consensus 221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 249 (395)
++++....+...++.++...++++++.
T Consensus 226 --p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 226 --PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp --TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred --CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 466777788888999988888877654
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=2.6e-20 Score=162.88 Aligned_cols=218 Identities=14% Similarity=0.021 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCCh-HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114 77 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 155 (395)
Q Consensus 77 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 155 (395)
.....+++++....... ...+..+.++..+|.++...|++ ++|+.+|++++++ +|....++..+|.+|..
T Consensus 79 ~~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence 44455566665555443 24567788999999999999999 9999999999987 45556789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114 156 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV---------GRGQEGRELLEECLLITEKYKGKEHP 226 (395)
Q Consensus 156 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (395)
.|++++|+.+|++++++ .++ ..++.++|.++... |++++|+..+++++++ .|
T Consensus 150 ~g~~~~A~~~~~~al~~-------~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p 210 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTH-------CKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DV 210 (474)
T ss_dssp HTCHHHHHHHHHHHHTT-------CCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred cCCHHHHHHHHHHHHhh-------CCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CC
Confidence 99999999999999974 233 36779999999999 9999999999999986 34
Q ss_pred hHHHHHHHHHHHHHhh--------hcHHHHHHHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114 227 SFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGPDDQ---SISFPMLHLGITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~ 295 (395)
....++.++|.++... |++++|+..|++++.+ .| ....++.++|.++...|++++|+..|+
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567899999999999 9999999999999985 35 778899999999999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114 296 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 296 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 339 (395)
+++++. ++ ...++..++.++...|+++ +|+..+.+
T Consensus 283 ~al~l~-----p~---~~~a~~~l~~~~~~lg~~~-eAi~~~~~ 317 (474)
T 4abn_A 283 QAAALD-----PA---WPEPQQREQQLLEFLSRLT-SLLESKGK 317 (474)
T ss_dssp HHHHHC-----TT---CHHHHHHHHHHHHHHHHHH-HHHHHTTT
T ss_pred HHHHhC-----CC---CHHHHHHHHHHHHHHHHHH-HHHHHhcc
Confidence 999864 33 3457889999999999888 77766544
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=2.4e-19 Score=141.31 Aligned_cols=207 Identities=15% Similarity=0.072 Sum_probs=174.5
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
..|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 72 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-- 72 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence 35677889999999999999999999999999986 34445688999999999999999999999999852
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 254 (395)
++. ..++..+|.++... |++++|+.++++++. .+..|....++..+|.++...|++++|+.++++
T Consensus 73 -----~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 73 -----PDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp -----TTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----CCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222 34668899999999 999999999999886 124566678899999999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHcCCchhHH
Q 016114 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK-DSLPVGEALDCLVSIQTRLGEDDTKL 333 (395)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A 333 (395)
++.. .|....++..+|.++...|++++|..++++++... + ..+. .+..++.++...|+.+ +|
T Consensus 139 ~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~-~a 201 (225)
T 2vq2_A 139 SLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQAD---DLLLGWKIAKALGNAQ-AA 201 (225)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCCHH---HHHHHHHHHHHTTCHH-HH
T ss_pred HHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCHH---HHHHHHHHHHhcCcHH-HH
Confidence 9874 34556788999999999999999999999998865 3 3333 4667888889999988 89
Q ss_pred HHHHHHHHHH
Q 016114 334 LELLKRVLRI 343 (395)
Q Consensus 334 ~~~~~~al~~ 343 (395)
..+++.+...
T Consensus 202 ~~~~~~~~~~ 211 (225)
T 2vq2_A 202 YEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9888888764
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=1.6e-20 Score=170.35 Aligned_cols=175 Identities=18% Similarity=0.177 Sum_probs=157.1
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
..|..+.+++++|.++..+|++++|+.+|++++++ +|....++.++|.++..+|++++|+..|++++++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-- 73 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-- 73 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 46888999999999999999999999999999987 46667899999999999999999999999999862
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
++. ..++.++|.++..+|++++|+..|++++++ +|....++.++|.++..+|++++|+..|+++
T Consensus 74 -----P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 74 -----PTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp -----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333 567899999999999999999999999986 3556788999999999999999999999999
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114 256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304 (395)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 304 (395)
+++ +|....++.++|.++...|++++|.+.+++++++....
T Consensus 138 l~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 138 LKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 985 57778899999999999999999999999999987654
No 72
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=5.9e-20 Score=149.55 Aligned_cols=233 Identities=12% Similarity=0.052 Sum_probs=167.2
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
.++|..+.++..+|.++...|++++|+..|++++... |....++..+|.++...|++++|+..+++++..
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 106 (275)
T 1xnf_A 37 LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-- 106 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 4467788888889999999999999999998888762 223456788888999999999999999988876
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
.|....++..+|.++...|++++|+.++++++.. .++++. ....++ +....|++++|+..+++++
T Consensus 107 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~---~~~~~~-~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 107 ------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPF---RSLWLY-LAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp ------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHH-HHHHHHCHHHHHHHHHHHH
T ss_pred ------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChH---HHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 3445678888899999999999999999988876 223332 222222 3355688999999888887
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHH
Q 016114 171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 250 (395)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 250 (395)
... ++... ...++.++...++.++|+..+++++...... .+....++..+|.++...|++++|..
T Consensus 172 ~~~-------~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 172 EKS-------DKEQW----GWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp HHS-------CCCST----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcC-------CcchH----HHHHHHHHHHhcCHHHHHHHHHHHhcccccc----cccccHHHHHHHHHHHHcCCHHHHHH
Confidence 752 12211 1346777778888888888888876643321 23446788899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 016114 251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 294 (395)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 294 (395)
++++++.+ .|... ...+.++...|++++|++.+
T Consensus 237 ~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 237 LFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 99998873 23222 23366778888888888776
No 73
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.87 E-value=1.3e-20 Score=162.83 Aligned_cols=152 Identities=10% Similarity=-0.028 Sum_probs=145.8
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 016114 234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 313 (395)
Q Consensus 234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 313 (395)
..+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.+..+|++||.++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 314 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
.++.+||.+|..+|+++ +|+.+|++|+++.+..+|++||.+..+...++.++..+|++++|...|+++.+-.
T Consensus 394 ~~l~nLa~~~~~~G~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIE-VGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999987644
No 74
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.86 E-value=3.7e-20 Score=159.92 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=146.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 270 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 270 (395)
...+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.++.+|++||.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 344 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~ 344 (395)
+.++.+||.+|..+|++++|+.++++|+++.+..+|++||.+......++.++..++.+. +|...|+++.+..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~-~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR-QNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999987654
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.83 E-value=1.7e-18 Score=136.69 Aligned_cols=184 Identities=10% Similarity=0.044 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
..+..+|.++...|++++|+..|++++.+. ++....++..+|.++...|++++|+.++++++.. +
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------N 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence 678899999999999999999999999872 2134467778999999999999999999999975 5
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
|....++..+|.++...|++++|+..+++++++. |+.+ ....++.++|.++...|++++|+..|+++++
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 6677899999999999999999999999999863 3322 2346789999999999999999999999987
Q ss_pred HHHhhhCCCChh--HHHHHHHHHHHHHhhhcH---------------------------HHHHHHHHHHHHHHHHhhCCC
Q 016114 216 ITEKYKGKEHPS--FVTHLLNLAASYSRSKNF---------------------------VEAERLLRICLDIMTKTVGPD 266 (395)
Q Consensus 216 ~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~---------------------------~~A~~~~~~a~~~~~~~~~~~ 266 (395)
+ +|. ...++.++|.++...|+. ++|+.++++++++
T Consensus 146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-------- 209 (228)
T 4i17_A 146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-------- 209 (228)
T ss_dssp S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 4 566 778999999999999988 7888888888774
Q ss_pred CcchHHHHHHHHHHH
Q 016114 267 DQSISFPMLHLGITL 281 (395)
Q Consensus 267 ~~~~~~~~~~la~~~ 281 (395)
.|....+...++.+.
T Consensus 210 ~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 210 SPNRTEIKQMQDQVK 224 (228)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 344445555555543
No 76
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.83 E-value=3.6e-19 Score=154.74 Aligned_cols=224 Identities=15% Similarity=0.061 Sum_probs=166.7
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhcc
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~ 177 (395)
..+.+.+|.+|...+.++++.......... . ...+|. ++.++|.+|...| ++++|+.+|+++.+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~---a-~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----- 208 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKA---A-LNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----- 208 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHH---H-TTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHH---H-HcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence 445667777777777666666553333222 2 123343 7889999999999 999999999999873
Q ss_pred cCCCCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHH-H--HhhhcHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-Y--SRSKNFVEAER 250 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~ 250 (395)
++.. ...+.++|.+|... +++++|+.+|+++. +....+++++|.+ + ...+++++|+.
T Consensus 209 --g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 209 --GTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp --TCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred --CCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 2222 33447899998665 69999999999875 2234578899998 4 57899999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114 251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-----RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 325 (395)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (395)
+|+++.+ .....++.+||.+|. .| ++++|+.+|+++. +.+ ..+...||.+|..
T Consensus 273 ~~~~Aa~----------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~---~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 273 YLDNGRA----------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GRE---VAADYYLGQIYRR 330 (452)
T ss_dssp HHHHHHH----------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTC---HHHHHHHHHHHHT
T ss_pred HHHHHHH----------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCC---HHHHHHHHHHHHC
Confidence 9999986 224668899999998 66 9999999999886 123 3578899988887
Q ss_pred ----cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH----hcchhhhchhhHHHHHH
Q 016114 326 ----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 326 ----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 385 (395)
..+++ +|+.+|+++.+. .+ ..+.+.||.+|.. ..++++|..+|+++.+.
T Consensus 331 G~g~~~d~~-~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 331 GYLGKVYPQ-KALDHLLTAARN-------GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TTTSSCCHH-HHHHHHHHHHTT-------TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred CCCCCcCHH-HHHHHHHHHHhh-------Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 33677 999999998751 22 4577899999885 45889999999998754
No 77
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=2.3e-19 Score=155.97 Aligned_cols=286 Identities=12% Similarity=0.062 Sum_probs=143.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCch---hHHHHHHHHHHHHHHHhcCCCC
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA---KKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~ 97 (395)
..+|..+...|++++|+.+|+++.+. + ...+++.+|.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----G-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----T-----CCTGGGTCC----------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------
Confidence 45788999999999999999998764 1 123567788888888888 8999999888753
Q ss_pred hhhhhhHHhHHHHHHHcC-----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 98 ADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.+.+++.+|.++...+ ++++|+.+|+++++. +++. ++.++|.+|...+...++...++.....
T Consensus 68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-------GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-------TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-------CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 2456788888666665 778899888888762 2222 4455555555544433322222221111
Q ss_pred HHhcc------------------------------cCCCCchHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHh
Q 016114 173 IKDSN------------------------------YMSLDDSIMENMRIDLAELLHIVG---RGQEGRELLEECLLITEK 219 (395)
Q Consensus 173 ~~~~~------------------------------~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~ 219 (395)
..... ....++. ++.++|.+|...| ++++|+.+|+++.+.
T Consensus 136 ~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--- 208 (452)
T 3e4b_A 136 QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI----CYVELATVYQKKQQPEQQAELLKQMEAGVSR--- 208 (452)
T ss_dssp HHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---
T ss_pred HHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---
Confidence 11000 0001111 3455555555555 555555555555442
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhh-----cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-H--HhcCChHHHH
Q 016114 220 YKGKEHPSFVTHLLNLAASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-L--YHLNRDKEAE 291 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~ 291 (395)
.+.....++++|.+| ..| ++++|+.+|+++. +....++.+||.+ + ...+++++|+
T Consensus 209 -----g~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 209 -----GTVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp -----TCSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred -----CCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 122223334555555 223 4555555555442 2334455666665 3 3456666666
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-----CchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q 016114 292 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG-----EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL 366 (395)
Q Consensus 292 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 366 (395)
.+|+++.+ .++ ..+...||.+|. .| +++ +|+.+|+++. +.+ ..++++||.+|
T Consensus 272 ~~~~~Aa~-------~g~---~~A~~~Lg~~y~-~G~g~~~d~~-~A~~~~~~Aa--------~g~---~~A~~~Lg~~y 328 (452)
T 3e4b_A 272 KYLDNGRA-------ADQ---PRAELLLGKLYY-EGKWVPADAK-AAEAHFEKAV--------GRE---VAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHH-------TTC---HHHHHHHHHHHH-HCSSSCCCHH-HHHHHHHTTT--------TTC---HHHHHHHHHHH
T ss_pred HHHHHHHH-------CCC---HHHHHHHHHHHH-cCCCCCCCHH-HHHHHHHHHh--------CCC---HHHHHHHHHHH
Confidence 66666653 122 235566666665 34 455 5665555554 122 35666777666
Q ss_pred HH----hcchhhhchhhHHHHH
Q 016114 367 DK----LGRKEEKFPLKKRLSN 384 (395)
Q Consensus 367 ~~----~g~~~~A~~~~~~a~~ 384 (395)
.. ..++++|..+|+++.+
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCCCCCCcCHHHHHHHHHHHHh
Confidence 65 2367777777777664
No 78
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.82 E-value=3.9e-18 Score=139.93 Aligned_cols=197 Identities=9% Similarity=0.013 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|.....+...+..+...|++++|+..+.++++..+. .+........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG- 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-
Confidence 444556677888999999999999999999875321 11223455667789999999999999999999999764331
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.+......++..+|.+|...|++++|+.+|++++.+.+.. ++.+. ...++.++|.+|...|++++|+.++++++++
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2333456789999999999999999999999999887764 23333 3378999999999999999999999999998
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHhh
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG-RELLEECLLITEKY 220 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 220 (395)
.... .+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus 226 ~~~~----~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 226 SCRI----NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHT----TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhc----CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 8642 34555678899999999999999999 88899999987654
No 79
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.82 E-value=6.5e-18 Score=138.59 Aligned_cols=199 Identities=10% Similarity=0.021 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
+.....+...+..+...|++++|...+++++..... .++.......+..+|.++...|++++|+.++++++.+...
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-- 147 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC--
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC--ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc--
Confidence 444555566788889999999999999998874211 1111122455667999999999999999999999985322
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
..+....+.++.++|.+|...|++++|+.+|+++++..+.. +.+.+..+.++.++|.+|..+|++++|+.++++++++.
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 12233446689999999999999999999999999988764 23566788899999999999999999999999999998
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhhh
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGR-GQEGRELLEECLLITEKYK 221 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 221 (395)
... .+....+.++.++|.++...|+ +++|+.++++|+.+.+...
T Consensus 227 ~~~----~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 227 CRI----NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHT----TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHc----CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 764 4556668889999999999995 6999999999999987653
No 80
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.81 E-value=9.1e-18 Score=129.97 Aligned_cols=194 Identities=15% Similarity=0.059 Sum_probs=153.9
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHH
Q 016114 112 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 191 (395)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 191 (395)
...|++++|...++... .+++....++..+|.++...|++++|+.++++++.+.+.. .+++....++.
T Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~ 70 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS----GDHTAEHRALH 70 (203)
T ss_dssp ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----CCcHHHHHHHH
Confidence 46789999988554431 1334678899999999999999999999999999998863 45677788899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114 192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 271 (395)
Q Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 271 (395)
++|.++...|++++|+.++++++.+.+... .+......++.++|.++...|++++|..++++++.+.... .+.....
T Consensus 71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~ 147 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRCFLEERELLASLP-EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIA 147 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHH
Confidence 999999999999999999999999987532 2223677889999999999999999999999999987654 2334456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 322 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 322 (395)
.++..+|.++...|++++|..++++++++..+. .+......++..++.+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccch
Confidence 678999999999999999999999999998775 3334444455554443
No 81
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.81 E-value=8.4e-18 Score=130.18 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=153.5
Q ss_pred HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114 70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 149 (395)
Q Consensus 70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 149 (395)
...|++++|...++.... +++....++..+|.++...|++++|+.++++++.+.+.. .+.+....++.++
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHH
Confidence 467899999885543311 344678899999999999999999999999999998764 3456678899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114 150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 229 (395)
Q Consensus 150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (395)
|.++...|++++|+.++++++.+.+.. +.++.....++.++|.++...|++++|+.++++++.+.+... +.....
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~ 147 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASL---PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIA 147 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc---CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHH
Confidence 999999999999999999999998863 224446778889999999999999999999999999876543 334456
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 016114 230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 279 (395)
Q Consensus 230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 279 (395)
.++.++|.++...|++++|..++++++.+..+. ++......++..++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~ 195 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNG 195 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccc
Confidence 778999999999999999999999999988765 233334444444443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=5.8e-18 Score=133.61 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=143.1
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 180 (395)
+..+..+|.++...|++++|+..|++++.+. ++....++.++|.++...|++++|+..++++++. .
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~ 72 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------N 72 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------T
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------C
Confidence 3788999999999999999999999999872 1122356777999999999999999999999974 2
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh----hHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP----SFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
|+ ...++..+|.++...|++++|+..+++++.+. ++++ ....++..+|.++...|++++|+..|++++
T Consensus 73 p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 73 YN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp CS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 33 35667899999999999999999999999863 2222 233678999999999999999999999998
Q ss_pred HHHHHhhCCCCcc--hHHHHHHHHHHHHhcCCh---------------------------HHHHHHHHHHHHHH
Q 016114 257 DIMTKTVGPDDQS--ISFPMLHLGITLYHLNRD---------------------------KEAEKLVLEALYIR 301 (395)
Q Consensus 257 ~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~ 301 (395)
+ .+|. ...++.++|.++...|+. ++|+.++++++++.
T Consensus 145 ~--------~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 145 D--------VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp T--------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred h--------cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7 3577 788999999999999988 78888888887753
No 83
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2e-17 Score=147.43 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 016114 144 MAMCSLAHAKCA-------NGNAE-------EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 209 (395)
Q Consensus 144 ~~~~~la~~~~~-------~g~~~-------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (395)
.++..+|..+.. .|+++ +|...++++++. ..|+. ..++..++.++...|++++|...
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~------~~p~~---~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------LLKKN---MLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT------TCSSC---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH------hCccc---HHHHHHHHHHHHhcCCHHHHHHH
Confidence 456666776665 68876 777777777651 12232 45678899999999999999999
Q ss_pred HHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-HHhcCChH
Q 016114 210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDK 288 (395)
Q Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~ 288 (395)
|++++++ .+.++ ..++..++.++...|++++|...|++++.. .|.....+...+.+ +...|+++
T Consensus 344 ~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 344 YNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChh
Confidence 9999974 12222 357889999999999999999999999862 23334444444444 34689999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHHH
Q 016114 289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE-VMLTLKKVVSYLD 367 (395)
Q Consensus 289 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~ 367 (395)
+|...|+++++.. |+++ ..+..++.++...|+.+ +|...|++++.. .+.+|. ...++...+....
T Consensus 409 ~A~~~~e~al~~~-----p~~~---~~~~~~~~~~~~~g~~~-~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 409 VAFKIFELGLKKY-----GDIP---EYVLAYIDYLSHLNEDN-NTRVLFERVLTS-----GSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHHHHHH-----TTCH---HHHHHHHHHHTTTTCHH-HHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHhCCCHh-hHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHH
Confidence 9999999999875 4444 46788999999999999 999999999874 223332 3446667778888
Q ss_pred HhcchhhhchhhHHHHHHHHH
Q 016114 368 KLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 368 ~~g~~~~A~~~~~~a~~~~~~ 388 (395)
..|+.+.+..+++++++..++
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTHH
T ss_pred HcCCHHHHHHHHHHHHHHCch
Confidence 899999999999999998875
No 84
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.80 E-value=1.7e-17 Score=136.08 Aligned_cols=197 Identities=11% Similarity=-0.065 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
+.....+...+..+...|++++|+..+.++++.... .+........+..+|.++...|++++|+.++++++.+...
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC----CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC----ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 344456677888999999999999999999875321 1122234455677999999999999999999999976543
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114 220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEAL 298 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 298 (395)
. .+......++.++|.+|...|++++|+.++++++++.... ++.+. ...++.++|.+|..+|++++|+.++++++
T Consensus 148 ~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 148 G--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp S--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 2334457789999999999999999999999999877654 22232 23789999999999999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH-HHHHHHHHHHHHhc
Q 016114 299 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL-LELLKRVLRIQERE 347 (395)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A-~~~~~~al~~~~~~ 347 (395)
++.... .+......++..+|.++...|+++ +| ..++++++.+++..
T Consensus 224 ~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~-~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 224 EISCRI--NSMALIGQLYYQRGECLRKLEYEE-AEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHT--TBCSSHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CcHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHh
Confidence 988543 445556788999999999999999 99 88899999998763
No 85
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.80 E-value=2e-17 Score=135.61 Aligned_cols=194 Identities=10% Similarity=0.051 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh---hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL---VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
.....+...+..+...|++++|...+++++.. .+..+.. ...+..+|.++...|++++|+.++++++.+...
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 44445556678889999999999999998874 1223332 345566899999999999999999999985322
Q ss_pred HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114 134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 213 (395)
Q Consensus 134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (395)
..+....+.++.++|.+|...|++++|+.+|+++++..+.. +.+.+....++.++|.+|...|++++|+.+++++
T Consensus 148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12233456789999999999999999999999999988763 3466777889999999999999999999999999
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHh
Q 016114 214 LLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAERLLRICLDIMTKT 262 (395)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~ 262 (395)
+++..... +.+..+.++.++|.++...| ++++|..++++++.+++..
T Consensus 223 l~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 223 IEISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 99987654 45567889999999999999 5799999999999988765
No 86
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3.7e-17 Score=145.70 Aligned_cols=318 Identities=9% Similarity=0.008 Sum_probs=214.7
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+|....++..++.. ...|++++|...|+++++. .|.....+..++..+...|++++|...|++++..
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---- 75 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---- 75 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence 35555667777774 6789999999999999875 3444667888999999999999999999999875
Q ss_pred cCCCChhhhhhHHhHHH-HHHHcCChHHHHH----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---------CCC
Q 016114 93 RGTESADLVLPLFSLGS-LFIKEGKAVDAES----VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGN 158 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~ 158 (395)
.|. ...+...+. +....|++++|.+ .|++++.. .|. ++.....+...+..... .|+
T Consensus 76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 232 345555553 4456788888776 55555443 221 22222333333333332 455
Q ss_pred HHHHHHHHHHHHHH-----------------------------------------HH-------hccc----CCCC----
Q 016114 159 AEEAVELYKKALRV-----------------------------------------IK-------DSNY----MSLD---- 182 (395)
Q Consensus 159 ~~~A~~~~~~a~~~-----------------------------------------~~-------~~~~----~~~~---- 182 (395)
+++|..+|++++.. .. .... ..+.
T Consensus 146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 55555555554421 00 0000 0000
Q ss_pred ------------------------c------------------hHHHHHHHHHHHHHHH-------cCChH-------HH
Q 016114 183 ------------------------D------------------SIMENMRIDLAELLHI-------VGRGQ-------EG 206 (395)
Q Consensus 183 ------------------------~------------------~~~~~~~~~la~~~~~-------~g~~~-------~A 206 (395)
. |....++..+|..+.. .|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 0 0112345556666665 68876 66
Q ss_pred HHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch-HHHHHHHHHHHHhcC
Q 016114 207 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLN 285 (395)
Q Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g 285 (395)
+..+++++.. ..|.....+..++.++...|++++|...|++++.+ .|.. ..++..++.++...|
T Consensus 306 ~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 306 ANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp HHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------SSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--------cccCchHHHHHHHHHHHHhc
Confidence 7777766641 13555678889999999999999999999999983 2332 357889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH-HHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 016114 286 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI-QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 364 (395)
Q Consensus 286 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 364 (395)
++++|...|+++++.. +... ..+...+.+ +...|+.+ +|...|+++++.. +++ ..++..++.
T Consensus 371 ~~~~A~~~~~~Al~~~-----~~~~---~~~~~~a~~~~~~~~~~~-~A~~~~e~al~~~-----p~~---~~~~~~~~~ 433 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-----RTRH---HVYVTAALMEYYCSKDKS-VAFKIFELGLKKY-----GDI---PEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHTCT-----TCCT---HHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHH-----TTC---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-----CCch---HHHHHHHHHHHHHcCChh-HHHHHHHHHHHHC-----CCC---HHHHHHHHH
Confidence 9999999999998732 2222 223333433 34689998 9999999999864 333 467788999
Q ss_pred HHHHhcchhhhchhhHHHHHH
Q 016114 365 YLDKLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 365 ~~~~~g~~~~A~~~~~~a~~~ 385 (395)
++...|+.++|..+|++++..
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHhCCCHhhHHHHHHHHHhc
Confidence 999999999999999999875
No 87
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.5e-16 Score=138.29 Aligned_cols=242 Identities=14% Similarity=0.128 Sum_probs=192.6
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC---------ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE---------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 132 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 132 (395)
...-|..+...|+|++|++.|.++++..+...... ......++..+|.+|...|++++|.+++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34457778899999999999999987633211000 012234688999999999999999999999999876
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
.. ++......+...++.++...|++++|+.++++++.+.... .+......++.++|.++...|++++|..++++
T Consensus 87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE----KRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS----SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 53 1223345567788999999999999999999999998764 34455677889999999999999999999999
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114 213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 292 (395)
Q Consensus 213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 292 (395)
++....... +.+....++..++.+|...|++++|..++++++.+..... ..+......+..+|.++...|++++|..
T Consensus 161 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 161 LLREFKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 988766543 5678889999999999999999999999999998776552 1223346778889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChHH
Q 016114 293 LVLEALYIREIAFGKDSLPV 312 (395)
Q Consensus 293 ~~~~al~~~~~~~~~~~~~~ 312 (395)
+|.++++.............
T Consensus 238 ~~~~a~~~~~~~~~~~~~~~ 257 (434)
T 4b4t_Q 238 YFFESFESYHNLTTHNSYEK 257 (434)
T ss_dssp HHHHHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHhhhhhhhhhHHH
Confidence 99999998877655444433
No 88
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=7.4e-17 Score=133.26 Aligned_cols=223 Identities=14% Similarity=0.058 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHH-------hhCch-------hHHHHHHHHHHHHHHHhcCCCChh
Q 016114 34 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-------SIGRA-------KKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 34 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
++|+..|++++... |....++..+|..+. ..|++ ++|...|++++.. -.|.
T Consensus 33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-------~~p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKK 97 (308)
T ss_dssp HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTTT
T ss_pred HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-------hCcc
Confidence 78889999998863 344566777777775 35886 8999999999872 1466
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 179 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 179 (395)
...++..+|.++...|++++|...|++++++ .+.++. .++..+|.++...|++++|...|+++++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------- 163 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED------- 163 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------
Confidence 6788999999999999999999999999975 233332 27889999999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 180 SLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 180 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
.+.. ..++...+.+.. ..|++++|...|+++++.. |.....+..++.++...|++++|..+|++++..
T Consensus 164 ~p~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 164 ARTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp TTCC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2222 223344444433 3799999999999999864 334567889999999999999999999999872
Q ss_pred HHHhhCCCCc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 259 MTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 259 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
. ...| .....+..++..+...|++++|...++++++..
T Consensus 233 ~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 233 G-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp S-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred c-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 0 1133 356678888999999999999999999998865
No 89
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=9.5e-17 Score=132.59 Aligned_cols=225 Identities=15% Similarity=0.132 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-------cCCh-------HHHHHHHHHHHHHHHHHhCCCChh
Q 016114 76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-------EGKA-------VDAESVFSRILKIYTKVYGENDGR 141 (395)
Q Consensus 76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~ 141 (395)
++|+..|++++.. .|....++..+|..+.. .|++ ++|...|++++... +|.
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKK 97 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTT
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Ccc
Confidence 6888899999886 46667888888888764 5886 88999999988721 455
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (395)
...++..+|.++...|++++|...|++++++ .|..+. .++.++|.++...|++++|+..|+++++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---- 164 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA---- 164 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST----
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----
Confidence 5678899999999999999999999999984 233332 267889999999999999999999998742
Q ss_pred CCCChhHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 222 GKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 222 ~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
|.....+...+.+.. ..|++++|...|++++.. .|.....+..++.++...|++++|+.+|++++..
T Consensus 165 ----p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 165 ----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp ----TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred ----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 222334444554433 369999999999999985 2445678899999999999999999999999873
Q ss_pred HHHHcCCCCh-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 301 REIAFGKDSL-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 301 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
. +..| .....+..++......|+.+ .|...++++++....
T Consensus 233 ~-----~l~p~~~~~l~~~~~~~~~~~g~~~-~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 233 G-----SLPPEKSGEIWARFLAFESNIGDLA-SILKVEKRRFTAFRE 273 (308)
T ss_dssp S-----SSCGGGCHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHTTT
T ss_pred c-----CCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHccc
Confidence 1 1123 23456778888999999999 999999999987644
No 90
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.2e-16 Score=138.97 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=194.3
Q ss_pred hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN---------DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
+....|..+...|++++|++.|.++++..+...... ......++..+|.+|...|++++|.+++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345567788899999999999999987643221000 11234578899999999999999999999999987
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
... ++......+...++.++...|++++|+.++++++.+..... +.+....++.++|.++...|++++|..+++
T Consensus 86 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 86 MQF----AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTS----CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHc----cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 653 33444456677889999999999999999999999887654 455677889999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH
Q 016114 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL 333 (395)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 333 (395)
+++...... .+.+....++..++.+|...|++++|..++++++.+..... ..+...+..+..+|.++...|++. +|
T Consensus 160 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~-~A 235 (434)
T 4b4t_Q 160 DLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYK-TA 235 (434)
T ss_dssp HHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHH-HH
T ss_pred HHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHH-HH
Confidence 998866544 45677888999999999999999999999999999876652 222344677888999999999999 99
Q ss_pred HHHHHHHHHHHHhccCCCCH
Q 016114 334 LELLKRVLRIQEREFGSESE 353 (395)
Q Consensus 334 ~~~~~~al~~~~~~~~~~~~ 353 (395)
..+|.+++..+.........
T Consensus 236 ~~~~~~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 236 FSYFFESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHHHhhhhhhhhhH
Confidence 99999999988776554443
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=1.4e-16 Score=125.21 Aligned_cols=177 Identities=12% Similarity=0.025 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
+..++.+|..+...|++++|+..|++++.. .++++....++..+|.++...|++++|+..|+++++. .|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 456789999999999999999999999986 3444556678999999999999999999999999986 345
Q ss_pred ChhhhhhHHhHHHHHHH------------------cCChHHHHHHHHHHHHHHHHHhCCCChhHHH--------------
Q 016114 97 SADLVLPLFSLGSLFIK------------------EGKAVDAESVFSRILKIYTKVYGENDGRVGM-------------- 144 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------------- 144 (395)
++....+++.+|.++.. .|++++|+..|+++++.. |+++....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 55566688889988876 578999999999998763 33333222
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
....+|.+|...|++++|+..|+++++.. |+.+....++..+|.++...|++++|+..++.+..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-------PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 22578999999999999999999999863 55666677889999999999999999999987665
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=3.2e-16 Score=123.09 Aligned_cols=177 Identities=13% Similarity=0.067 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
...++.+|..+...|++++|+..|++++.. .++++....+++.+|.++...|++++|+..|+++++. .|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 346788899999999999999999999986 3445566788999999999999999999999999987 355
Q ss_pred ChhHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHhcccCCCCchHHH-------------
Q 016114 139 DGRVGMAMCSLAHAKCA------------------NGNAEEAVELYKKALRVIKDSNYMSLDDSIME------------- 187 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------- 187 (395)
++....++..+|.++.. .|++++|+..|+++++.. |+.+...
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHHHHHHHH
Confidence 66666788888888875 679999999999998753 3333222
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 188 -NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 188 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.....+|.+|...|++++|+..|+++++.. ++++....++..+|.++...|++++|+..++.+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 122578999999999999999999999863 34566678899999999999999999999987765
No 93
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.77 E-value=1.1e-17 Score=142.14 Aligned_cols=123 Identities=15% Similarity=0.071 Sum_probs=117.8
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 016114 198 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277 (395)
Q Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (395)
...|+|++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++.+.++.+|++||.++..+.+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114 278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320 (395)
Q Consensus 278 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 320 (395)
|.+|..+|++++|+.++++|+++....+|++||.+.....+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999988776654
No 94
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.76 E-value=1.2e-17 Score=141.92 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=117.6
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320 (395)
Q Consensus 241 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 320 (395)
..|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++..+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 016114 321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV 363 (395)
Q Consensus 321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 363 (395)
.+|..+|+++ +|+.+|++|+++.+..+|++||.+..+..+|.
T Consensus 390 ~~~~~qg~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKA-AGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999 99999999999999999999999998877664
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=4.9e-17 Score=123.81 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=146.6
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
++..+..+..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+..+++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---- 71 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---- 71 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 44567788999999999999999999999987641 223567889999999999999999999999886
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.|....++..+|.++...|++++|..++++++.. .|....++..+|.++...|++++|+.+++++++.
T Consensus 72 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 72 ----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 3555678899999999999999999999999986 2334567889999999999999999999999885
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
. ++. ..++..+|.++...|++++|..++++++....
T Consensus 140 ~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 140 R-------PNE---GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp C-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred C-------ccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 2 222 45668899999999999999999999998753
No 96
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.75 E-value=3.7e-16 Score=116.19 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=139.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
.+++..+.++..+|.++...|++++|+.++++++++.+.. .+....+.++..+|.++...|++++|+.++++++.+..
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999999999998764 34456778899999999999999999999999999987
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 170 (395)
... +.+....++..+|.++...|++++|..++++++.+.+.. .+.+....++..+|.++...|++++|..++++++
T Consensus 81 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 81 QLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhC--CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 643 455667889999999999999999999999999998764 2445677889999999999999999999999999
Q ss_pred HHHHh
Q 016114 171 RVIKD 175 (395)
Q Consensus 171 ~~~~~ 175 (395)
++.++
T Consensus 157 ~~~~~ 161 (164)
T 3ro3_A 157 EISRE 161 (164)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 98754
No 97
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.75 E-value=5.4e-16 Score=115.31 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=138.2
Q ss_pred ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 54 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
+.+..+.++..+|.++...|++++|+.++++++.+..... +......++..+|.++...|++++|..++++++.+.+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999987753 45566778999999999999999999999999999876
Q ss_pred HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114 134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 213 (395)
Q Consensus 134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (395)
. ++.+....++.++|.++...|++++|+.++++++++.+.. .+++....++..+|.++...|++++|+.+++++
T Consensus 82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4 3445567889999999999999999999999999998763 456667788899999999999999999999999
Q ss_pred HHHHHh
Q 016114 214 LLITEK 219 (395)
Q Consensus 214 l~~~~~ 219 (395)
+++.++
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 988654
No 98
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.75 E-value=3.5e-17 Score=139.60 Aligned_cols=133 Identities=10% Similarity=-0.034 Sum_probs=126.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHH
Q 016114 194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP 273 (395)
Q Consensus 194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 273 (395)
..-+..+|++++|+..+++++++.++.+|++||.++.++.++|.+|..+|+|++|+.++++++.+.++.+|++||.++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114 274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 326 (395)
Q Consensus 274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (395)
+.+||.+|..+|++++|+.++++|+++....+|++||.+..++.+|+.+....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887654
No 99
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=5.4e-17 Score=123.59 Aligned_cols=174 Identities=18% Similarity=0.122 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 263 (395)
Q Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 263 (395)
......+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 344567789999999999999999999988653 2344678889999999999999999999999874
Q ss_pred CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
.|....++..+|.++...|++++|..++++++... +. ....+..+|.++...|+++ +|+.++++++..
T Consensus 72 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~ 139 (186)
T 3as5_A 72 ---APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----PI---NFNVRFRLGVALDNLGRFD-EAIDSFKIALGL 139 (186)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cH---hHHHHHHHHHHHHHcCcHH-HHHHHHHHHHhc
Confidence 35566788999999999999999999999998753 33 3456889999999999999 999999999975
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 344 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
. +. ...++..+|.++...|++++|..++++++.+.++..
T Consensus 140 ~-----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 140 R-----PN---EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp C-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred C-----cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 2 22 356789999999999999999999999999887643
No 100
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.75 E-value=3.6e-17 Score=139.55 Aligned_cols=134 Identities=9% Similarity=-0.061 Sum_probs=127.0
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 016114 236 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA 315 (395)
Q Consensus 236 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 315 (395)
..-+..+|++++|+..+++++++..+.+|++||.++.++.++|.+|..+|++++|+.++++++.+.+..+|++||.++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc
Q 016114 316 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG 370 (395)
Q Consensus 316 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 370 (395)
+++||.+|..+|+++ +|+.++++|+++.+..+|++||.+..++.+|+.+...++
T Consensus 374 l~nLa~~~~~~g~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFP-QAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999 999999999999999999999999999999998876543
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.75 E-value=3.8e-16 Score=120.98 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHH----------------HHHHHHhhCchhHHHH
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG----------------MAKVLGSIGRAKKAVE 80 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~ 80 (395)
+..+...|..+...|++++|+..|++++.. .|....++.. +|.++...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 445678999999999999999999999986 3455566677 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCH-
Q 016114 81 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA- 159 (395)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 159 (395)
.|++++++ .|....++..+|.++...|++++|+..|++++++ +|....++.++|.+|...|+.
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 99999987 5677889999999999999999999999999987 455567899999999776643
Q ss_pred -HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 160 -EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 160 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
..+...+.+++. +++. ...+..+|.++...|++++|+.+|++++++
T Consensus 140 ~~~~~~~~~~~~~---------~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLSS---------PTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC---C---------CCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhC---------CCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344455544321 2222 234577899999999999999999999875
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.74 E-value=2e-17 Score=120.85 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=121.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114 22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 101 (395)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (395)
.||.++...|++++|+..+++++. ..|.....++.+|.+|...|++++|+..|++++++ .|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 478999999999999999999865 35667778889999999999999999999999997 57778
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhcccCC
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL-YKKALRVIKDSNYMS 180 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~ 180 (395)
.++..+|.++...|++++|+..|++++++ +|....++.++|.++...|++++|... +++++++ .
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------~ 130 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------F 130 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-------S
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------C
Confidence 89999999999999999999999999987 455567899999999999999887765 5899986 3
Q ss_pred CCchHHHHHHHHHHHHHHHcCC
Q 016114 181 LDDSIMENMRIDLAELLHIVGR 202 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~~~~~g~ 202 (395)
|+++. ++...+.++...|+
T Consensus 131 P~~~~---~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPA---VYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHH---HHHHHHHHHHTCCC
T ss_pred cCCHH---HHHHHHHHHHHhCc
Confidence 44443 44667778777775
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=5.4e-16 Score=120.11 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=133.3
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS----------------LAHAKCANGNAEEAVE 164 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 164 (395)
+..+...|..+...|++++|+..|++++.. +|....++.. +|.++...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 445677899999999999999999999987 5666667777 9999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc
Q 016114 165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244 (395)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 244 (395)
.|++++++. |+. ..++.++|.++...|++++|+..|++++++ +|....++.++|.+|...|+
T Consensus 76 ~~~~al~~~-------p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 76 FYKELLQKA-------PNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHC-------TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhH
Confidence 999999862 333 456789999999999999999999999986 35566789999999987765
Q ss_pred H--HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 245 F--VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 245 ~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
. ..+...+.+++. + +....+++.+|.++...|++++|+.+|++++++.
T Consensus 138 ~~~~~~~~~~~~~~~-------~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 138 QEKKKLETDYKKLSS-------P--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHC---C-------C--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhC-------C--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4 444555554432 1 2223466788999999999999999999999854
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.74 E-value=3.4e-17 Score=149.46 Aligned_cols=200 Identities=14% Similarity=0.110 Sum_probs=159.6
Q ss_pred HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114 70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 149 (395)
Q Consensus 70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 149 (395)
...|++++|+..+++++...-......+|....++..+|.++...|++++|+..|+++++. +|....++.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence 7889999999999999822111112246778889999999999999999999999999987 34456789999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114 150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 229 (395)
Q Consensus 150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (395)
|.++...|++++|+..|++++++. |+. ..++.++|.++...|++++ +..|++++++ +|...
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~-------P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~ 534 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF-------PGE---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVI 534 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-------TTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchH
Confidence 999999999999999999999963 333 3456899999999999999 9999999986 35556
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHH
Q 016114 230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA 304 (395)
Q Consensus 230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 304 (395)
.++.++|.++...|++++|+..|+++++ .+|....++.++|.++...++.+++ ...++++++.....
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPP--------TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCT--------TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcc--------cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 7899999999999999999999999886 3677888999999999888776655 66777777766554
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=2.4e-17 Score=120.39 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=119.2
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4788999999999999999988653 5777788999999999999999999999999987 45666
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHhhhC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL-LEECLLITEKYKG 222 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~ 222 (395)
.++..+|.++...|++++|+..|++++++. |+. ..++.++|.++...|++++|... +++++++
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~~~~~~aa~~~~~~al~l------ 129 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN-------PTQ---KDLVLKIAELLCKNDVTDGRAKYWVERAAKL------ 129 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 789999999999999999999999999862 333 45678999999999999887765 5899886
Q ss_pred CCChhHHHHHHHHHHHHHhhhc
Q 016114 223 KEHPSFVTHLLNLAASYSRSKN 244 (395)
Q Consensus 223 ~~~~~~~~~~~~la~~~~~~~~ 244 (395)
+|....++...+.++..+|+
T Consensus 130 --~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 --FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --STTCHHHHHHHHHHHHTCCC
T ss_pred --CcCCHHHHHHHHHHHHHhCc
Confidence 23444567777888877764
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.73 E-value=1.9e-17 Score=151.11 Aligned_cols=200 Identities=15% Similarity=0.040 Sum_probs=157.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhH
Q 016114 28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL 107 (395)
Q Consensus 28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 107 (395)
...|++++|+..++++++..-......+|....++..+|.++...|++++|+..|+++++. .|....+++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence 7889999999999999821111111223555678899999999999999999999999987 46667899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHH
Q 016114 108 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 187 (395)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (395)
|.++...|++++|+..|++++++ +|....++.++|.++...|++++ +..|++++++. ++. .
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~---~ 534 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGV---I 534 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTC---H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------Cch---H
Confidence 99999999999999999999987 34445788999999999999999 99999999862 333 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH-HHHHHHHHHHHHHh
Q 016114 188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA-ERLLRICLDIMTKT 262 (395)
Q Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~~~~ 262 (395)
.++.++|.++...|++++|+..|++++++ +|....++.++|.++...++.+++ ...+++++......
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 46799999999999999999999998764 567788899999999887775555 56666666655444
No 107
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.4e-15 Score=141.88 Aligned_cols=193 Identities=18% Similarity=0.184 Sum_probs=112.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhh
Q 016114 23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 102 (395)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (395)
+|.++...|.+++|..+|+++-.. ... +...+...|++++|.++++++ ....
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~---------~~A------~~VLie~i~nldrAiE~Aerv-------------n~p~ 1106 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN---------TSA------VQVLIEHIGNLDRAYEFAERC-------------NEPA 1106 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH---------HHH------HHHHHHHHhhHHHHHHHHHhc-------------CCHH
Confidence 466777777777777777765211 010 111222445555555554432 2245
Q ss_pred hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC
Q 016114 103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 182 (395)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 182 (395)
+|..+|..+...|++++|+..|.++ ++ ...+..+|.++...|++++|+++|..+.+..+.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA----------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------- 1166 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA----------DD---PSSYMEVVQAANTSGNWEELVKYLQMARKKARE------- 1166 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc----------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------
Confidence 6777777777777777777777664 12 235566777777777777777777777664311
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114 183 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 262 (395)
Q Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 262 (395)
+. +-..+|.+|.+.+++++. +.|. . .+.. ..+..+|..+...|++++|..+|.++
T Consensus 1167 ~~----Idt~LafaYAKl~rleel-e~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1167 SY----VETELIFALAKTNRLAEL-EEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred cc----ccHHHHHHHHhhcCHHHH-HHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 00 012366666666666642 2221 0 1112 23445777777777777777777654
Q ss_pred hCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114 263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 263 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 297 (395)
..|..++.++...|++++|++.+++|
T Consensus 1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1222 ---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 13556677777777777777777666
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.70 E-value=7.5e-16 Score=108.58 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=103.5
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114 10 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 89 (395)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 89 (395)
..-+|..+..+..+|..++..|+|++|+..|++++++ .|....++..+|.++...|++++|+..|++++++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 76 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL- 76 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-
Confidence 3467999999999999999999999999999999986 2344678899999999999999999999999987
Q ss_pred HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 016114 90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 152 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 152 (395)
+|....++..+|.++..+|++++|+..|++++++ +|....++..++.+
T Consensus 77 -------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 77 -------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNC 124 (126)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred -------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHh
Confidence 5677889999999999999999999999999987 34444566666654
No 109
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=1.1e-13 Score=129.37 Aligned_cols=253 Identities=14% Similarity=0.011 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC---
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG--- 136 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 136 (395)
.+|..+|.++...|++++|+..|.++ +....+..+|.++...|++++|++++..+....+...-
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~ 1172 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE 1172 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH
Confidence 45667777777777777777777553 22345566777777777777777777766553210000
Q ss_pred -----------------CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH
Q 016114 137 -----------------ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199 (395)
Q Consensus 137 -----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 199 (395)
-..+.. ..+..+|..+...|+|++|..+|.++- .|..++.++..
T Consensus 1173 LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~------------------ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS------------------NFGRLASTLVH 1233 (1630)
T ss_pred HHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh------------------HHHHHHHHHHH
Confidence 000111 122334444444444444444444431 12334444444
Q ss_pred cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 016114 200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 279 (395)
Q Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 279 (395)
.|++++|++.+++|.. ..+|...+.++...|+|..|..+... + ......+..++.
T Consensus 1234 Lge~q~AIEaarKA~n-------------~~aWkev~~acve~~Ef~LA~~cgl~-I-----------iv~~deLeeli~ 1288 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKANS-------------TRTWKEVCFACVDGKEFRLAQMCGLH-I-----------VVHADELEELIN 1288 (1630)
T ss_pred hCCHHHHHHHHHHhCC-------------HHHHHHHHHHHhhhhHHHHHHHHHHh-h-----------hcCHHHHHHHHH
Confidence 4444444444444311 12344444444444444444443332 1 112234457788
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114 280 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG--EDDTKLLELLKRVLRIQEREFGSESEEVML 357 (395)
Q Consensus 280 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 357 (395)
.|...|.+++|+.+++.++.+- +.....+..++.++.+.. +.. +++++|...+.+-+-+ ..-....
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklm-Ehlk~f~~rini~k~~---r~~e~~~ 1356 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMR-EHLELFWSRVNIPKVL---RAAEQAH 1356 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHH-HHHHHHHHhcccchHh---HHHHHHH
Confidence 8999999999999998887643 233344556777776643 222 3444444433221000 0114466
Q ss_pred HHHHHHHHHHHhcchhhhchhhHH
Q 016114 358 TLKKVVSYLDKLGRKEEKFPLKKR 381 (395)
Q Consensus 358 ~~~~la~~~~~~g~~~~A~~~~~~ 381 (395)
.|..+..+|.+-|+++.|....-.
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHh
Confidence 788899999999999999844433
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.65 E-value=5.6e-15 Score=104.08 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
+|..+..+..+|..++..|+|++|+..|++++++ .|....++.++|.++..+|++++|+..+++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 5788999999999999999999999999999987 5677889999999999999999999999999987
Q ss_pred hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
+|....++.++|.++..+|++++|+..|++++++
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4555678999999999999999999999999996
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.65 E-value=2.9e-14 Score=110.66 Aligned_cols=177 Identities=16% Similarity=0.152 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114 76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 155 (395)
Q Consensus 76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 155 (395)
.+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+. ++ ..++.++|.+|..
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~---~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GD---GDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHc
Confidence 3577778777653 34678999999999999999999999999763 23 4678999999998
Q ss_pred CC----CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChh
Q 016114 156 NG----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS 227 (395)
Q Consensus 156 ~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (395)
+ ++++|+.+|+++.+. .+ ..++.++|.+|.. .+++++|+.+|+++.+.- ....
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~---------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~ 123 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA---------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDA 123 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT---------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcc
Confidence 7 999999999999652 22 3466899999988 889999999999987631 1114
Q ss_pred HHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc-C-----ChHHHHHHHHHH
Q 016114 228 FVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N-----RDKEAEKLVLEA 297 (395)
Q Consensus 228 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a 297 (395)
...++.+||.+|.. .+++++|+.+|+++.+. +....++.+||.+|... | ++++|+.+|+++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 57789999999999 88999999999999872 22344789999999864 3 899999999999
Q ss_pred HHH
Q 016114 298 LYI 300 (395)
Q Consensus 298 l~~ 300 (395)
.+.
T Consensus 195 ~~~ 197 (212)
T 3rjv_A 195 CLE 197 (212)
T ss_dssp HHH
T ss_pred HHc
Confidence 874
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.64 E-value=5.5e-15 Score=111.25 Aligned_cols=165 Identities=19% Similarity=0.088 Sum_probs=131.4
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 180 (395)
...+..+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..+++++.. .
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~ 70 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------Y 70 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------G
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------c
Confidence 456778899999999999999999999987 3555678999999999999999999999998763 2
Q ss_pred CCchHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114 181 LDDSIMENMRIDLAEL-LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 259 (395)
| .+.. ...++.+ +...++..+|+..++++++. .|....++..+|.++...|++++|+..|++++..
T Consensus 71 p-~~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 137 (176)
T 2r5s_A 71 Q-DNSY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV- 137 (176)
T ss_dssp C-CHHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred C-ChHH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-
Confidence 3 3322 2223333 22334455689999999875 3555678899999999999999999999999872
Q ss_pred HHhhCCCCcc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 260 TKTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 260 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
+|. ...++..+|.++...|+.++|...|++++..
T Consensus 138 -------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 -------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 333 3457889999999999999999999998764
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.64 E-value=1.1e-14 Score=115.01 Aligned_cols=208 Identities=12% Similarity=-0.021 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHH-------HHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM-------AKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
.++..|.-+ ..+++..|...|.+++.+ +|....+|..+ +.++...++..+++..+++++.+...
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~ 79 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS 79 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGG
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 345666666 589999999999999987 46677888888 88999999999999999988876333
Q ss_pred hcCCCCh-------------hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC
Q 016114 92 NRGTESA-------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 158 (395)
Q Consensus 92 ~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 158 (395)
..+.... ....+...++.++...|++++|.+.|...+. ..|... ..+.+|.++...++
T Consensus 80 ~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~~r 150 (282)
T 4f3v_A 80 TLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAAER 150 (282)
T ss_dssp GGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHTTC
T ss_pred hhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHcCC
Confidence 2211100 0123444578899999999999999987764 245555 88999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh-HHHHHHHHHH
Q 016114 159 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAA 237 (395)
Q Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~ 237 (395)
+++|+..++.+... +++.....++.++|.++...|++++|+.+|++++. ++..|. ...+.+++|.
T Consensus 151 ~~dA~~~l~~a~~~--------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 151 WTDVIDQVKSAGKW--------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHHHHHTTGGGC--------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc--------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHH
Confidence 99999999865431 22323345789999999999999999999999873 222244 6678899999
Q ss_pred HHHhhhcHHHHHHHHHHHHHH
Q 016114 238 SYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 238 ~~~~~~~~~~A~~~~~~a~~~ 258 (395)
++..+|+.++|...|++++..
T Consensus 217 aL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999883
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.63 E-value=1.9e-15 Score=113.80 Aligned_cols=167 Identities=18% Similarity=0.087 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 96 (395)
...+..+|..+...|++++|+..|+++++.. |....++..+|.++...|++++|+..+++++..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------- 69 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLE-------- 69 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--------
Confidence 4456789999999999999999999998863 455678999999999999999999999998764
Q ss_pred ChhhhhhHHhHHHHH-HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 97 SADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.| .......++.+. ...+...+|+..++++++. +|....++..+|.++...|++++|+..++++++.
T Consensus 70 ~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--- 137 (176)
T 2r5s_A 70 YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV--- 137 (176)
T ss_dssp GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---
Confidence 22 223333334332 2334445689999999876 4555678999999999999999999999999874
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.|++.. ..++.+++.++...|+.++|+..|++++..
T Consensus 138 ----~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 ----NLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ----CTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ----CcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 222211 235678999999999999999999998764
No 115
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=3.9e-16 Score=130.32 Aligned_cols=261 Identities=12% Similarity=0.043 Sum_probs=110.6
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHH
Q 016114 26 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 105 (395)
Q Consensus 26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 105 (395)
.....|+.++|..++++. ++| .+|..+|..+...|++++|++.|.++- ....+.
T Consensus 12 ll~~~~~ld~A~~fae~~----------~~~---~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~ 65 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC----------NEP---AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC----------CCh---HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHH
Confidence 344677888998888876 122 378899999999999999999997641 123677
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchH
Q 016114 106 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 185 (395)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (395)
.++..+...|++++|+.+++.+.+.. ++ ..+...++.+|.+.|+++++..+++. |+.
T Consensus 66 ~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------------pn~-- 122 (449)
T 1b89_A 66 EVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING------------PNN-- 122 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTC------------C----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC------------CcH--
Confidence 77888899999999999999887641 11 34567789999999999998877742 221
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCC
Q 016114 186 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 265 (395)
Q Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 265 (395)
..+..+|..+...|+|++|..+|.++ ..+..+|.++...|++++|++.++++.
T Consensus 123 --~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------- 175 (449)
T 1b89_A 123 --AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN--------- 175 (449)
T ss_dssp ----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT---------
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC---------
Confidence 26789999999999999999999865 247789999999999999999999871
Q ss_pred CCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114 266 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 345 (395)
Q Consensus 266 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 345 (395)
...+|..+..++...|+++.|..+.... ..+|+. +..+...|.+.|.++ +|+.++++++.+
T Consensus 176 ----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~---l~~lv~~Yek~G~~e-Eai~lLe~aL~l-- 236 (449)
T 1b89_A 176 ----STRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE---LEELINYYQDRGYFE-ELITMLEAALGL-- 236 (449)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH---HHHHHHHHHHTTCHH-HHHHHHHHHTTS--
T ss_pred ----CchhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh---HHHHHHHHHHCCCHH-HHHHHHHHHhCC--
Confidence 2356778889999999999996655431 244554 335888899999999 999999999853
Q ss_pred hccCCCCHHHHHHHHHHHHHHHH--hcchhhhchhhHHHHHHHH
Q 016114 346 REFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 346 ~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~ 387 (395)
.+.| ..++..||.+|.+ .++..++++.|...+.+.+
T Consensus 237 ---e~ah---~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 237 ---ERAH---MGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp ---TTCC---HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred ---cHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 2233 4555666666654 5777777777776666655
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=1.5e-14 Score=117.86 Aligned_cols=169 Identities=15% Similarity=0.033 Sum_probs=143.5
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
|.....+..+|..+...|++++|+..|++++.. +|....++..+|.++...|++++|+..+++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence 455677889999999999999999999999987 4555678999999999999999999999998763
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.++. .......+..+...++.++|+..+++++.. +|....++.++|.++...|++++|+..|++++.
T Consensus 181 --~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 181 --DQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp --GCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2322 233456677788889999999999999885 456677899999999999999999999999998
Q ss_pred HHHHhhCCCCcch--HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 258 IMTKTVGPDDQSI--SFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 258 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
. +|.. ..++..++.++...|+.++|...|++++..
T Consensus 248 ~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 248 X--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp H--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred c--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4 3444 678899999999999999999999998864
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=2.6e-14 Score=110.88 Aligned_cols=177 Identities=14% Similarity=0.036 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH
Q 016114 34 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 113 (395)
Q Consensus 34 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (395)
.+|+.+|+++.+. ....+++.+|.++...+++++|+.+|+++.+. ..+.+++.+|.+|..
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence 3577788887753 22457889999999999999999999999763 245788999999998
Q ss_pred cC----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCCchH
Q 016114 114 EG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSI 185 (395)
Q Consensus 114 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (395)
+ ++++|+.+|+++.+. . ...++.++|.+|.. .+++++|+.+|+++.+. + +...
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~-~~~~ 123 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------S-ESDA 123 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------T-TSHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------C-CCcc
Confidence 7 899999999999642 2 34678999999988 89999999999999863 1 1113
Q ss_pred HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh-h-----cHHHHHHHHHHH
Q 016114 186 MENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-K-----NFVEAERLLRIC 255 (395)
Q Consensus 186 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~a 255 (395)
...++.+||.+|.. .+++++|+.+|+++.+. +.+ ..++.+||.+|... | ++++|+.+|+++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 35567899999999 88999999999999864 012 23688999999764 3 899999999999
Q ss_pred HHH
Q 016114 256 LDI 258 (395)
Q Consensus 256 ~~~ 258 (395)
.+.
T Consensus 195 ~~~ 197 (212)
T 3rjv_A 195 CLE 197 (212)
T ss_dssp HHH
T ss_pred HHc
Confidence 873
No 118
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=3.5e-16 Score=130.62 Aligned_cols=269 Identities=12% Similarity=0.018 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
.+|..+|..+...|++++|++.|.++-. ...+..++..+...|++++|+.+++.+.+..
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~D-------------~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~-------- 91 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSYMEVVQAANTSGNWEELVKYLQMARKKA-------- 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------
Confidence 4788999999999999999999976411 2256677888889999999999998887631
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
++ +.+...++.+|.+.|++.++.+++.. |.. .++..+|..+...|+|++|..+|.++
T Consensus 92 ~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 92 RE-SYVETELIFALAKTNRLAELEEFING-------------PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp ------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT--------
T ss_pred cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 11 45567789999999999998877741 222 38999999999999999999999975
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
..+..+|.++...|++++|++.++++. + ..+|...+.++...|+++.|..+....
T Consensus 149 ----------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L-- 203 (449)
T 1b89_A 149 ----------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHI-- 203 (449)
T ss_dssp ----------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred ----------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence 134779999999999999999999871 1 356778889999999999996655431
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114 258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337 (395)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 337 (395)
..+|+. ...+..+|...|++++|+.++++++.+. +.| ...+..||.++.+-. ++ +-.+
T Consensus 204 -------~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le-----~ah---~~~ftel~il~~ky~-p~-k~~e-- 261 (449)
T 1b89_A 204 -------VVHADE---LEELINYYQDRGYFEELITMLEAALGLE-----RAH---MGMFTELAILYSKFK-PQ-KMRE-- 261 (449)
T ss_dssp -------TTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST-----TCC---HHHHHHHHHHHHTTC-HH-HHHH--
T ss_pred -------HhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc-----HHH---HHHHHHHHHHHHhcC-HH-HHHH--
Confidence 124433 3468889999999999999999998642 233 345667788877653 33 3222
Q ss_pred HHHHHHHHhccCCCCH------HHHHHHHHHHHHHHHhcchhhhchhhHH
Q 016114 338 KRVLRIQEREFGSESE------EVMLTLKKVVSYLDKLGRKEEKFPLKKR 381 (395)
Q Consensus 338 ~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 381 (395)
.++.+.+.. +-| .....|..+..+|...++++.|....-+
T Consensus 262 --hl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 262 --HLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp --HHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 333333221 122 2345677889999999999988765443
No 119
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.62 E-value=4.4e-14 Score=99.72 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=96.1
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
++.+.++.++|..++..|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456678889999999999999999999999987 45556789999999999999999999999999987753
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.......+.++.++|.++...|++++|+.+|++++..
T Consensus 76 --~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 --RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp --TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455667788999999999999999999999999875
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=4.7e-15 Score=107.44 Aligned_cols=102 Identities=9% Similarity=0.069 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
+|....+++.+|.++...|++++|+..|++++.+ +|....++.++|.++...|++++|+..|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 5778889999999999999999999999999987 6777889999999999999999999999999988
Q ss_pred hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
+|....++.++|.++...|++++|+..|++++++
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444467999999999999999999999999996
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=1.6e-14 Score=117.66 Aligned_cols=171 Identities=15% Similarity=0.108 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|.....+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..+++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence 3445667899999999999999999999999862 334567899999999999999999999998764
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
.|.........+..+...++.++|+..+++++.. +|....++.++|.++...|++++|+..+++++...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3344455666777788899999999999999987 56666789999999999999999999999999862
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
|+.. -..++.+++.++...|+.++|...|++++..
T Consensus 250 -------p~~~-~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 -------LTAA-DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp -------TTGG-GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -------cccc-cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 2221 1345688999999999999999999998764
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=3.4e-14 Score=102.90 Aligned_cols=109 Identities=10% Similarity=0.193 Sum_probs=98.0
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114 6 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85 (395)
Q Consensus 6 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 85 (395)
++.....+|....+++.+|..+...|++++|+..|++++.+ +|....++..+|.++...|++++|+..|+++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34455668999999999999999999999999999999987 2444668899999999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
+.+ .|..+.+++++|.++..+|++++|+..|++++.+
T Consensus 97 l~l--------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 97 FAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHH--------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998 5667789999999999999999999999999987
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.60 E-value=6.9e-13 Score=107.39 Aligned_cols=238 Identities=10% Similarity=-0.009 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC--chhHHHHHHHHHHHHHHHh
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELN 92 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~ 92 (395)
....+...+-.........++|+..+.+++.+ .|....+++..+.++...| ++++++..+.+++..
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---- 98 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---- 98 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----
Confidence 34444433333333444447899999999987 3555678889999999999 999999999999986
Q ss_pred cCCCChhhhhhHHhHHHHH----HHc---CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH--HHH
Q 016114 93 RGTESADLVLPLFSLGSLF----IKE---GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE--EAV 163 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~ 163 (395)
+|....+++..+.++ ... +++++++.++.++++. +|....++...+.+....|.++ +++
T Consensus 99 ----nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 99 ----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp ----CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ----CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHH
Confidence 677778888888888 666 7899999999999986 5666788999999999999998 999
Q ss_pred HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 237 (395)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 237 (395)
.+++++++.. +.+ ..++...+.+....|+ ++++++++.+++.. +|....+++.++.
T Consensus 167 ~~~~~~i~~d-------~~N---~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ 228 (306)
T 3dra_A 167 SFVDKVIDTD-------LKN---NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLG 228 (306)
T ss_dssp HHHHHHHHHC-------TTC---HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCC---HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHH
Confidence 9999999852 222 4567888888888887 88999999998875 4566678889999
Q ss_pred HHHhhhcHHH-HHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 238 SYSRSKNFVE-AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 238 ~~~~~~~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
++...|+..+ ...++.+++.+ +...+....++..++.++...|+.++|+++|+.+.+
T Consensus 229 ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFVDL-----EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTEEG-----GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHhc-----cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999888544 33454444431 112356677899999999999999999999998765
No 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=5.1e-14 Score=99.39 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
++.+.++..+|..++..|+|++|+.+|++++++ .|..+.++.++|.+|..+|++++|+..+++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 466778899999999999999999999999987 56778899999999999999999999999999987654
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
....+..+.++.++|.++...|++++|+.+|++++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2334557789999999999999999999999999874
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.60 E-value=9.7e-14 Score=109.61 Aligned_cols=209 Identities=12% Similarity=0.019 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhH-------HHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL-------GSLFIKEGKAVDAESVFSRILKIYT 132 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~ 132 (395)
..++..|.-+ ..+++..|...|.+++.+ +|..+.++..+ +.++...++..+++..+++.+.+..
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 3455556555 589999999999999997 78889999999 8999999999999999999887644
Q ss_pred HHhCCCCh-------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH
Q 016114 133 KVYGENDG-------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199 (395)
Q Consensus 133 ~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 199 (395)
..++.... ........++.++...|++++|.+.|...+. . .+.. . ..+.+|.++..
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-------~--~p~~-~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-------A--GSEH-L-VAWMKAVVYGA 147 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-------T--TCHH-H-HHHHHHHHHHH
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------c--CCch-H-HHHHHHHHHHH
Confidence 33221111 1234566788999999999999999987654 1 2222 2 66889999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhhCCCChh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-hHHHHHHH
Q 016114 200 VGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHL 277 (395)
Q Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 277 (395)
.+++++|+..++.+... .++. ...+++++|.++...|++++|+.+|+++.. ++..|. ...+.+.+
T Consensus 148 ~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYL 214 (282)
T ss_dssp TTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHH
Confidence 99999999999865432 2333 245789999999999999999999999874 222254 66788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHH
Q 016114 278 GITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 278 a~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
|.++..+|+.++|...|++++...
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999998854
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.60 E-value=9.9e-13 Score=106.47 Aligned_cols=223 Identities=10% Similarity=-0.060 Sum_probs=180.2
Q ss_pred hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114 72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 149 (395)
Q Consensus 72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 149 (395)
....++|+..+.+++.+ .|....+++..+.++...| ++++++.++.+++.. +|....+++..
T Consensus 46 ~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R 109 (306)
T 3dra_A 46 EEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYR 109 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHH
Confidence 34446899999999987 6888899999999999999 999999999999986 45555678888
Q ss_pred HHHH----HHC---CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHhh
Q 016114 150 AHAK----CAN---GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ--EGRELLEECLLITEKY 220 (395)
Q Consensus 150 a~~~----~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~ 220 (395)
+.++ ... +++++++.++.++++... .+ ..++...+.+....|+++ ++++++.++++.
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-------kn---y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---- 175 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDP-------KN---HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---- 175 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-------CC---HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----
Confidence 8887 666 899999999999998532 22 456788899999999998 999999999875
Q ss_pred hCCCChhHHHHHHHHHHHHHhhhc------HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHH-HHHH
Q 016114 221 KGKEHPSFVTHLLNLAASYSRSKN------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-AEKL 293 (395)
Q Consensus 221 ~~~~~~~~~~~~~~la~~~~~~~~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~ 293 (395)
++....++...+.+....++ ++++++++.+++.. +|....++..++.++...|+..+ ...+
T Consensus 176 ----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~ 243 (306)
T 3dra_A 176 ----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEF 243 (306)
T ss_dssp ----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHH
T ss_pred ----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHH
Confidence 45666788899999988887 89999999999883 67788899999999999998655 4445
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114 294 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 342 (395)
Q Consensus 294 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 342 (395)
+.+++... ...+....++..++.++.+.|+.+ +|+++|+.+.+
T Consensus 244 ~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~-~A~~~~~~l~~ 286 (306)
T 3dra_A 244 SLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYN-ESRTVYDLLKS 286 (306)
T ss_dssp HHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred HHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHh
Confidence 55555421 112334457889999999999998 99999998764
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.58 E-value=2.1e-14 Score=129.08 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=117.9
Q ss_pred hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114 72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 151 (395)
Q Consensus 72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 151 (395)
.|++++|+..++++++. .|....++..+|.++...|++++|+..++++++. .|....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47899999999999876 4666788999999999999999999999999975 4555678999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH
Q 016114 152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 231 (395)
Q Consensus 152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (395)
++...|++++|+.+++++++.. ++. ..++.++|.++...|++++|+..++++++. .|....+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 127 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA-------PEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYI 127 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 9999999999999999999862 232 456789999999999999999999999986 2444567
Q ss_pred HHHHHHHHHhh---hcHHHHHHHHHHHHHH
Q 016114 232 LLNLAASYSRS---KNFVEAERLLRICLDI 258 (395)
Q Consensus 232 ~~~la~~~~~~---~~~~~A~~~~~~a~~~ 258 (395)
+.++|.++... |++++|...++++++.
T Consensus 128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88999999999 9999999999999884
No 128
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.58 E-value=3.5e-14 Score=127.65 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=118.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114 30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 109 (395)
Q Consensus 30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 109 (395)
.|++++|+..++++++.. |....++..+|.++...|++++|+..++++++. .|....++..+|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 478999999999998763 334567899999999999999999999999985 5667789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH
Q 016114 110 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 189 (395)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (395)
++...|++++|+.+++++++. +|....++.++|.++...|++++|+..++++++.. ++. ..+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~---~~~ 127 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEE---PYI 127 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC---HHH
Confidence 999999999999999999987 34456789999999999999999999999999863 232 356
Q ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHHHH
Q 016114 190 RIDLAELLHIV---GRGQEGRELLEECLLIT 217 (395)
Q Consensus 190 ~~~la~~~~~~---g~~~~A~~~~~~al~~~ 217 (395)
+.++|.++... |++++|...++++++..
T Consensus 128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 68899999999 99999999999998863
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.55 E-value=3.7e-14 Score=118.21 Aligned_cols=164 Identities=16% Similarity=0.097 Sum_probs=131.2
Q ss_pred hhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC-------CChhHH
Q 016114 71 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE-------NDGRVG 143 (395)
Q Consensus 71 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 143 (395)
..+++++|+..+++++.. .|..+.++..+|.++...|++++|+..|++++.+....... ..+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 456778888888777665 46678899999999999999999999999999884221000 011236
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
.++.++|.++...|++++|+..+++++++. |+. ..++.++|.++...|++++|+..|++++++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------- 259 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-------SNN---EKGLSRRGEAHLAVNDFELARADFQKVLQL------- 259 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 789999999999999999999999999963 222 456799999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHhhhcHHHH-HHHHHHHHHHHH
Q 016114 224 EHPSFVTHLLNLAASYSRSKNFVEA-ERLLRICLDIMT 260 (395)
Q Consensus 224 ~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~~ 260 (395)
.|....++..++.++...|++++| ...|++++....
T Consensus 260 -~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 260 -YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 244456889999999999999999 456777665443
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.55 E-value=4.1e-13 Score=96.06 Aligned_cols=131 Identities=21% Similarity=0.415 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
.+++.+|.++...|++++|+.++++++... + ....++..+|.++...|++++|...+++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-----P---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----C---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 457889999999999999999999998752 2 23456788999999999999999999999876 3
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
|....++..+|.++...|++++|..++++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 445677889999999999999999999999876 2333467888999999999999999999999875
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.53 E-value=2.6e-13 Score=113.06 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=123.9
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC-------cChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG-------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 84 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (395)
..|..+.++..+|.+++..|++++|+..|++++.+.+.... ...+....++.++|.++...|++++|+..|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36778899999999999999999999999999998543210 01234468899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH-H
Q 016114 85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-V 163 (395)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~ 163 (395)
++.+ .|....+++.+|.++...|++++|+..|++++++ .|....++..++.++...|++++| .
T Consensus 222 al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 222 ALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 5667889999999999999999999999999987 344456889999999999999999 4
Q ss_pred HHHHHHHHHHH
Q 016114 164 ELYKKALRVIK 174 (395)
Q Consensus 164 ~~~~~a~~~~~ 174 (395)
..|++++....
T Consensus 286 ~~~~~~~~~~~ 296 (336)
T 1p5q_A 286 KLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 57777766543
No 132
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.53 E-value=1.1e-12 Score=93.82 Aligned_cols=131 Identities=21% Similarity=0.344 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 35778899999999999999999999875 3445678889999999999999999999999876 2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
|....++..+|.++...|++++|+..+++++... +.. ..++..+|.++...|++++|..++++++..
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 3334678899999999999999999999998852 222 345678999999999999999999998875
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.53 E-value=6.7e-13 Score=96.35 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=97.0
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114 6 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85 (395)
Q Consensus 6 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 85 (395)
++.....+|.....++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455667889999999999999999999999999999986 2334567889999999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
+.+ .|....+++.+|.++...|++++|+..|++++++.
T Consensus 82 l~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 82 AVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 987 46667889999999999999999999999999884
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.52 E-value=3.3e-13 Score=97.99 Aligned_cols=103 Identities=17% Similarity=-0.001 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
+|....+++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4677888999999999999999999999999987 5667788999999999999999999999999987
Q ss_pred hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
.|....++.++|.++...|++++|+..|++++++.
T Consensus 85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34444678999999999999999999999999975
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=2.3e-12 Score=95.86 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
..+..+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++.+++..
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 55678899999999999999999999999986 4556788999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.|....++..+|.++...|++++|+.+++++++.. +..+. ......++..+...|++++|+..+.++..+
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-------PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 34445688999999999999999999999999863 33332 223355666688899999999999998877
Q ss_pred HHh
Q 016114 217 TEK 219 (395)
Q Consensus 217 ~~~ 219 (395)
...
T Consensus 147 ~~~ 149 (166)
T 1a17_A 147 VDS 149 (166)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.3e-12 Score=92.29 Aligned_cols=123 Identities=12% Similarity=0.033 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|..+..+..+|..++..|++++|+..|++++.+. |....++..+|.++...|++++|+..+++++.+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----- 67 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK----- 67 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 4567788999999999999999999999999872 334578999999999999999999999999987
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 154 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 154 (395)
.|....++..+|.++...|++++|+..+++++.+..... +.|....+...++.+..
T Consensus 68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ 123 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence 466678999999999999999999999999999865432 23555556666665543
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=9e-13 Score=98.05 Aligned_cols=140 Identities=12% Similarity=0.050 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
...+..+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..+++++..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 76 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 3567788999999999999999999999999862 233567889999999999999999999999987
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
.|....++..+|.++...|++++|..++++++.. .++++. ......++..+...|++++|+..+.++..+.
T Consensus 77 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 77 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 4556788999999999999999999999999987 223332 2233556666888999999999999998877
Q ss_pred Hh
Q 016114 174 KD 175 (395)
Q Consensus 174 ~~ 175 (395)
..
T Consensus 148 ~~ 149 (166)
T 1a17_A 148 DS 149 (166)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.9e-12 Score=91.40 Aligned_cols=103 Identities=15% Similarity=-0.010 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
..+..+..+|..+...|++++|+..|++++.+ .|....++.++|.++...|++++|+..+++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34567889999999999999999999999987 4666789999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
+|....++..+|.++...|++++|+..+++++++...
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence 3555678999999999999999999999999998643
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=4.2e-13 Score=104.45 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+..++.+|..+...|++++|+..|++++. + ...++..+|.++...|++++|+..|++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 66 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR------- 66 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 445578999999999999999999998841 1 2357899999999999999999999999987
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--------GENDGRVGMAMCSLAHAKCANGNAEEAVELYK 167 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 167 (395)
.|....++..+|.++...|++++|+..|++++....... ....|....++.++|.++...|++++|+..++
T Consensus 67 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 67 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 456678899999999999999999999999998642210 00234566889999999999999999999999
Q ss_pred HHHHH
Q 016114 168 KALRV 172 (395)
Q Consensus 168 ~a~~~ 172 (395)
+++++
T Consensus 146 ~al~~ 150 (213)
T 1hh8_A 146 LATSM 150 (213)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 99885
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.48 E-value=2.5e-12 Score=91.80 Aligned_cols=118 Identities=18% Similarity=0.084 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC----CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT----ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
.+..+...|..++..|+|++|+..|++++++....... ..|....++.++|.++..+|++++|+..++++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 45667889999999999999999999999985331100 01223459999999999999999999999999998766
Q ss_pred HhCCCChhHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 134 VYGENDGRVGMAM----CSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 134 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
. ++-+|+...++ +++|.++..+|++++|+..|++++++....
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 5 34567788888 999999999999999999999999997653
No 141
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.48 E-value=3.1e-12 Score=91.35 Aligned_cols=117 Identities=10% Similarity=0.106 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC----cChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG----KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
.+..+...|..++..|+|++|+..|++++++.+.... ...|....++.++|.++..+|++++|+..+.++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4566789999999999999999999999998754111 112345669999999999999999999999999998665
Q ss_pred hcCCCChhhhhhH----HhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 92 NRGTESADLVLPL----FSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 92 ~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
.. +-.|+...++ +++|.++..+|++++|+..|++++++...
T Consensus 90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 53 4467788888 99999999999999999999999999654
No 142
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.48 E-value=9.3e-13 Score=102.45 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
...++.+|..+...|++++|+..|++++. + ...++..+|.++...|++++|+..+++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 34577889999999999999999998741 1 3568999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc------CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
.|....++.++|.++...|++++|+..++++++....... .....+....++.++|.++...|++++|+..+++
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3455678999999999999999999999999986432100 0002234457789999999999999999999999
Q ss_pred HHHH
Q 016114 213 CLLI 216 (395)
Q Consensus 213 al~~ 216 (395)
++.+
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9875
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.46 E-value=3e-12 Score=92.40 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=96.4
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114 6 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85 (395)
Q Consensus 6 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 85 (395)
++.....+|.....++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|+++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455667888999999999999999999999999999986 2334567889999999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 132 (395)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 132 (395)
+.+ .|....++..+|.++...|++++|+..|++++.+..
T Consensus 79 l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 79 ALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 987 456677899999999999999999999999998853
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.46 E-value=2.3e-12 Score=95.41 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC---cC-------hHHHHHHHHHHHHHHHhhCchhHHHHHH
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KT-------SILLVTSLLGMAKVLGSIGRAKKAVEIY 82 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (395)
....+..+...|..++..|+|++|+..|.+++.+...... +. .|....++.++|.++...|++++|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3456788899999999999999999999999998654321 11 4566788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 83 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
++++.+ .|....+++.+|.++...|++++|+..|++++.+
T Consensus 87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 999997 5777889999999999999999999999999988
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.45 E-value=3.7e-13 Score=103.38 Aligned_cols=159 Identities=13% Similarity=0.023 Sum_probs=114.9
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCc-
Q 016114 105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD- 183 (395)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~- 183 (395)
...+......|+++++.+.+...... .+..+..+..+|..+...|++++|+..|++++.+.... ++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~ 75 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEWD 75 (198)
T ss_dssp --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTCC
T ss_pred cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----cccc
Confidence 34455666778888887777655432 34566788999999999999999999999999864321 110
Q ss_pred ---------hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114 184 ---------SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 184 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 254 (395)
.....++.++|.++...|++++|+.++++++.+ .|....++..+|.++...|++++|+..|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 112367889999999999999999999999986 244567889999999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHH
Q 016114 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 291 (395)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 291 (395)
++.+ .|....++..++.++...++..++.
T Consensus 148 al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 148 AASL--------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHH--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 4556678889999999888877776
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=2.7e-13 Score=110.04 Aligned_cols=194 Identities=11% Similarity=-0.006 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
+..+..+|..+...|++++|+..|++++.. .|....++.++|.++...|++++|+..+++++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 456788999999999999999999999987 4666788999999999999999999999999875
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 218 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (395)
+|....++.++|.++...|++++|+..|++++++..... ..-.... . ..... .++..+....
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~-~----~~~~~------~~~~~~~~~~----- 129 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDI-P----SALRI------AKKKRWNSIE----- 129 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHH-H----HHHHH------HHHHHHHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHHH-H----HHHHH------HHHHHHHHHH-----
Confidence 455567899999999999999999999999999876420 0001111 1 11111 1111111111
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 016114 219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEA 297 (395)
Q Consensus 219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 297 (395)
....+..+.. ...++.+. .|++++|++.++++++. .|........++.++... +.+++|...|.++
T Consensus 130 ~~~~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 130 ERRIHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTCCCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111233333 23344443 69999999999888762 344455556666666665 6788888888877
Q ss_pred HH
Q 016114 298 LY 299 (395)
Q Consensus 298 l~ 299 (395)
.+
T Consensus 197 ~~ 198 (281)
T 2c2l_A 197 DE 198 (281)
T ss_dssp SC
T ss_pred hc
Confidence 65
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=2.3e-12 Score=91.51 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=106.3
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
...|..+..+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..+.+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 75 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-- 75 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--
Confidence 4578888999999999999999999999999999862 223567889999999999999999999999986
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 159 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 159 (395)
.|....++..+|.++...|++++|..++++++.. .|....++..++.++...|++
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 3455778999999999999999999999999987 233346778899998887764
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-12 Score=93.04 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=106.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114 10 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 89 (395)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 89 (395)
....|.....+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..+++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 79 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL- 79 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 45567788889999999999999999999999998752 233567899999999999999999999999986
Q ss_pred HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC
Q 016114 90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 158 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 158 (395)
.|....++..+|.++...|++++|+.++++++.. .|....++..++.++...|+
T Consensus 80 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred -------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 4556778999999999999999999999999986 34445677888888877654
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.44 E-value=1e-11 Score=89.56 Aligned_cols=104 Identities=14% Similarity=0.019 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
+|.....++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4677788999999999999999999999999986 5667788999999999999999999999999987
Q ss_pred hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
.|....++.++|.++...|++++|+..|++++++..
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344446789999999999999999999999999864
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.44 E-value=2.9e-13 Score=103.96 Aligned_cols=168 Identities=11% Similarity=-0.055 Sum_probs=113.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS- 269 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~- 269 (395)
...+......|+++++.+.+...... .+..+..+..+|..+...|++++|+..|++++.+.... ++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~ 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQ 77 (198)
T ss_dssp --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCH
T ss_pred cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchh
Confidence 33455666678888887777654432 24456778899999999999999999999999843211 10001
Q ss_pred ---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114 270 ---------ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 340 (395)
Q Consensus 270 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 340 (395)
...++.++|.++...|++++|+.++++++.+. |....++..+|.++...|+++ +|+..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~-~A~~~~~~a 148 (198)
T 2fbn_A 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLE-EAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHH-HHHHHHHHH
Confidence 13788999999999999999999999999863 334567899999999999999 999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc-hhhHHHHHH
Q 016114 341 LRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF-PLKKRLSNL 385 (395)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~ 385 (395)
+.+. |....++..++.++...++..++. ..+.+....
T Consensus 149 l~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLN--------PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHS--------TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9862 333567888999999999999888 555555443
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.43 E-value=1.1e-11 Score=88.02 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 54 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
..+.....+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+.++.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 35677888999999999999999999999999986 3455778999999999999999999999999986
Q ss_pred HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCCh
Q 016114 134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG 203 (395)
Q Consensus 134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 203 (395)
.|....++..+|.++...|++++|+.+++++++.. ++. ..++..++.++...|++
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~---~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-------PDN---ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC---HHHHHHHHHHHHHHTTC
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------ccc---hHHHHHHHHHHHHHhcC
Confidence 23445678999999999999999999999999862 233 34567899999888875
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.42 E-value=2.6e-12 Score=95.35 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
..++..+..+..+|.+++..|++++|+.+|++++.+. |....++..+|.++...|++++|+..|++++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 74 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-- 74 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 3567788899999999999999999999999999873 334568999999999999999999999999987
Q ss_pred HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
.|....++..+|.++...|++++|+.+|++++.+.
T Consensus 75 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 ------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46678899999999999999999999999999874
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.42 E-value=5e-13 Score=108.44 Aligned_cols=195 Identities=12% Similarity=0.034 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+..+..+|..+...|++++|+..|++++... |....++.++|.++...|++++|+..+++++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 35678899999999999999999999999862 234567889999999999999999999999875
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|....+++.+|.++...|++++|+..|++++.+.......-. ........ ..++..+.... ..
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~~~~~~----------~~~~~~~~~~~----~~ 131 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALR----------IAKKKRWNSIE----ER 131 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SHHHHHHH----------HHHHHHHHHHH----HT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHHH----------HHHHHHHHHHH----HH
Confidence 5677789999999999999999999999999998654210000 11111111 11111111111 11
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh-hcHHHHHHHHHH
Q 016114 176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLRI 254 (395)
Q Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~ 254 (395)
..+..+.+. ..++.+. .|++++|++.++++++. .|........++.++... +.+++|...|.+
T Consensus 132 ---~~~~~~~i~---~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 132 ---RIHQESELH---SYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp ---CCCCCCHHH---HHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHhhhHHHH---HHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 123333332 2344433 68889999888887763 233444555566666655 778889988887
Q ss_pred HHH
Q 016114 255 CLD 257 (395)
Q Consensus 255 a~~ 257 (395)
+.+
T Consensus 196 a~~ 198 (281)
T 2c2l_A 196 VDE 198 (281)
T ss_dssp SSC
T ss_pred hhc
Confidence 754
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.42 E-value=6.6e-10 Score=90.51 Aligned_cols=226 Identities=7% Similarity=-0.056 Sum_probs=162.0
Q ss_pred HhhCchh-HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC----------hHHHHHHHHHHHHHHHHHhCCC
Q 016114 70 GSIGRAK-KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 70 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 138 (395)
...|+++ +|+..+.+++.+ +|....+++..+.+....+. +++++.++..++..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence 4567766 789999988875 67788888888888877765 56677777777654
Q ss_pred ChhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGN--AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-GQEGRELLEECLL 215 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 215 (395)
+|....++...+.++...|+ +++++.++.++++... .+ ..++...+.+....|. ++++++++.+++.
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-------rN---y~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------RN---FHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-------CC---HHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 56667889999999999994 8999999999998532 22 4567888889999998 5899999999987
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhh--------------hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 016114 216 ITEKYKGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 281 (395)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 281 (395)
. +|....+++..+.++... +.++++++++.+++.+ +|....++..+..++
T Consensus 174 ~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 174 R--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLL 237 (331)
T ss_dssp H--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHH
T ss_pred H--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence 5 456667888888888776 6789999999999874 566677777665555
Q ss_pred Hhc-----------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 282 YHL-----------NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 282 ~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
... +.++++++.+++++++. |+......+...+.......|..+ +...++.+.+++
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~-----pd~~w~l~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~ 304 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELE-----PENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAV 304 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCTTTTHH-HHHHHHHHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhC-----cccchHHHHHHHHHHhhcccccHH-HHHHHHHHHHHh
Confidence 554 34667777777777654 444332222222211222345445 777777777764
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.41 E-value=3.3e-13 Score=117.80 Aligned_cols=180 Identities=11% Similarity=-0.002 Sum_probs=129.7
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
+..+..+..+|.++...|++++|+.+|++++++ +|....++.++|.++..+|++++|+..+++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 455677888999999999999999999999987 4555788999999999999999999999999984
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHH--HHhhhcHHHHHHHHH--
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS--YSRSKNFVEAERLLR-- 253 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~-- 253 (395)
.++. ..++.++|.+|...|++++|+..+++++++. |....++..++.+ +..+|++++|++.++
T Consensus 70 --~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 70 --DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred --CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2333 4567899999999999999999999999862 2223356667777 888999999999998
Q ss_pred ---------HHHHHHHHhhCCCCcc---hHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH
Q 016114 254 ---------ICLDIMTKTVGPDDQS---ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI 303 (395)
Q Consensus 254 ---------~a~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 303 (395)
+++.+.....++..+. ....+..+...+...+... .+..++.++.++...
T Consensus 137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 5554333322332332 2333444555555555544 445577777777654
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.41 E-value=8.9e-12 Score=88.74 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=103.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 260 (395)
+..+.....+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-- 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 344556778899999999999999999999999874 3444678899999999999999999999999984
Q ss_pred HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 328 (395)
Q Consensus 261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (395)
.|....++..+|.++...|++++|+.++++++... |....++..++.++...|+
T Consensus 80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHHHHTC
T ss_pred ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhcC
Confidence 35567789999999999999999999999998753 3344567888888887764
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.41 E-value=2.6e-12 Score=96.72 Aligned_cols=122 Identities=13% Similarity=0.179 Sum_probs=100.9
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114 27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 106 (395)
Q Consensus 27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 106 (395)
+...|++++|+..+++++... |....++..+|.++...|++++|+.+|++++.+. |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 467889999999999998862 2334678899999999999999999999999872 445678899
Q ss_pred HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 107 LGSL-FIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 107 l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
+|.+ +...|++ ++|+.++++++.. .|....++..+|.++...|++++|+..++++++.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999 8899999 9999999999987 3444567899999999999999999999999985
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.40 E-value=1.8e-11 Score=90.47 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=101.9
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC-CCC-------chHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-SLD-------DSIMENMRIDLAELLHIVGRGQEGRELL 210 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (395)
....+..+...|..+...|++++|+..|.+++.+....... .+. .+....++.++|.++...|++++|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34567789999999999999999999999999986543110 111 3455678899999999999999999999
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH-HHHHHHHHHHHhc
Q 016114 211 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYHL 284 (395)
Q Consensus 211 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~ 284 (395)
++++.+ +|....++..+|.++...|++++|+..|++++.+ .|... .+...++.+....
T Consensus 87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHH
Confidence 999986 3556678999999999999999999999999985 34443 3444555554443
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.39 E-value=1.5e-13 Score=119.93 Aligned_cols=181 Identities=11% Similarity=0.048 Sum_probs=130.1
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
++..+..+..+|..+...|++++|+..|++++++ +|....++..+|.++...|++++|+..+++++++
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 69 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---- 69 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence 4566777888999999999999999999999987 2344678999999999999999999999999986
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHHCCCHHHHHHHHH---
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA--KCANGNAEEAVELYK--- 167 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~--- 167 (395)
+|....++.++|.+|..+|++++|+..+++++++ .+++ ..++..++.+ +...|++++|+..++
T Consensus 70 ----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 70 ----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC---TTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5677889999999999999999999999999987 2223 3456667776 888899999999998
Q ss_pred --------HHHHHHHhcccCCCCch---HHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHh
Q 016114 168 --------KALRVIKDSNYMSLDDS---IMENMRIDLAELLHIVGRGQ--EGRELLEECLLITEK 219 (395)
Q Consensus 168 --------~a~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 219 (395)
+++.+.... .++..+ ........+...+...+.+. .+..++.++.++...
T Consensus 138 ~~~~~~~~~al~~~~~~--~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 138 SVVDSLDIESMTIEDEY--SGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp STTTCCTTSSCCCCTTC--CSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhHhhhhhhhccccccc--cccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 444432221 112111 12223344455555555543 444567777776654
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.39 E-value=1.1e-11 Score=91.92 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114 55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 134 (395)
.+..+..+..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 4567788999999999999999999999999987 4666789999999999999999999999999987
Q ss_pred hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
+|....++.++|.++...|++++|+.+|++++++.
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 35556789999999999999999999999999975
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.39 E-value=1.1e-12 Score=114.08 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=122.6
Q ss_pred hhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC-------CChhHH
Q 016114 71 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE-------NDGRVG 143 (395)
Q Consensus 71 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 143 (395)
..+++++|+..++.++.. .|..+..+..+|..+...|++++|+..|.+++.+....... ..+...
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 445677788777776654 45677889999999999999999999999999975321000 012236
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
.++.++|.++..+|++++|+..+++++++. ++. ..+++++|.+|...|++++|+..|++++++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------- 380 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-------SAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEV------- 380 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------Ccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 789999999999999999999999999863 222 567799999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114 224 EHPSFVTHLLNLAASYSRSKNFVEAERL 251 (395)
Q Consensus 224 ~~~~~~~~~~~la~~~~~~~~~~~A~~~ 251 (395)
.|....++..++.++...++++++...
T Consensus 381 -~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 381 -NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp -C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567889999999999999888753
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.37 E-value=2e-11 Score=91.79 Aligned_cols=122 Identities=14% Similarity=0.212 Sum_probs=99.6
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114 111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 190 (395)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (395)
+...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|++++++. ++. ..++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~ 81 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GEN---AELY 81 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSC---HHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC---HHHH
Confidence 45678999999999999986 34445789999999999999999999999999874 222 3456
Q ss_pred HHHHHH-HHHcCCh--HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 191 IDLAEL-LHIVGRG--QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 191 ~~la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
..+|.+ +...|++ ++|+.++++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 889999 8899999 9999999999986 2444567889999999999999999999999883
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.37 E-value=3.4e-11 Score=85.27 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCCh
Q 016114 19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 98 (395)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 98 (395)
.++.+|..+...|++++|+..|+++++. .++++....++..+|.++...|++++|+..|++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 4678999999999999999999999886 3445555678999999999999999999999999986 33444
Q ss_pred hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
....++..+|.++...|++++|...+++++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999986
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.37 E-value=1.5e-10 Score=94.59 Aligned_cols=243 Identities=12% Similarity=-0.003 Sum_probs=176.8
Q ss_pred hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcc
Q 016114 99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~ 177 (395)
+...++..+..+....+..++|+.++.+++.+ +|....+++..+.++...| .+++++.++++++..
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----- 118 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----- 118 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence 34445555666666677778999999999987 5666788999999999999 599999999999874
Q ss_pred cCCCCchHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHH--------H
Q 016114 178 YMSLDDSIMENMRIDLAELLHIV-G-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV--------E 247 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~ 247 (395)
.|.. ..+++..+.++... + ++++++.++.++++ .+|....++...+.+....|.++ +
T Consensus 119 --nPKn---y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 119 --NLKS---YQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp --TCCC---HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred --CCCc---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 2333 45667888888887 7 89999999988876 35666778888999988888887 8
Q ss_pred HHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114 248 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320 (395)
Q Consensus 248 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 320 (395)
+++++.++++. +|....++...+.++...++ ++++++++.+++.+. |....++..+.
T Consensus 186 ELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--------P~n~SaW~Ylr 249 (349)
T 3q7a_A 186 ELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--------PHNVSAWNYLR 249 (349)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 89988888873 57778899999999999887 678888888888753 44445677788
Q ss_pred HHHHHcCCchh-----------HHHH-HHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114 321 SIQTRLGEDDT-----------KLLE-LLKRVLRIQEREFGSE-----SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 383 (395)
Q Consensus 321 ~~~~~~~~~~~-----------~A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 383 (395)
.++...|.... ..+. .+....+......+.. .+....++..|+.+|...|+.++|..+++...
T Consensus 250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888776510 0000 0122222233322221 13345678889999999999999999988865
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=6.4e-12 Score=109.25 Aligned_cols=143 Identities=17% Similarity=0.282 Sum_probs=116.9
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC-------cChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG-------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 84 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 84 (395)
..|..+..+..+|..++..|+|++|+..|++++.+...... ...+....++.++|.++...|++++|+..|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 35778889999999999999999999999999998643210 01234478899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114 85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 164 (395)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 164 (395)
++.+ .|....+++++|.+|..+|++++|+..|++++++ .|....++..++.++...+++++|..
T Consensus 343 al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 343 ALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 5667889999999999999999999999999976 45556788999999999999988774
Q ss_pred H-HHHHH
Q 016114 165 L-YKKAL 170 (395)
Q Consensus 165 ~-~~~a~ 170 (395)
. +.+++
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 3 44433
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.37 E-value=1.1e-09 Score=89.26 Aligned_cols=223 Identities=9% Similarity=0.017 Sum_probs=161.3
Q ss_pred HhhhcHH-HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCc----------hhHHHHHHHHHHHHHHHhcCCC
Q 016114 28 STLENYE-KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR----------AKKAVEIYHRVITILELNRGTE 96 (395)
Q Consensus 28 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 96 (395)
...|+++ +|+.++.+++.+ .|....+++..+.+....|. +++++.++..++..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence 3456665 688888888765 34556677777877777665 56777777777764
Q ss_pred ChhhhhhHHhHHHHHHHcCC--hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGK--AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-AEEAVELYKKALRVI 173 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 173 (395)
+|....++...+.++...|+ +++++.++.++++. +|....++...+.+....|. +++++.++.++++..
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 67788899999999999994 89999999999986 56667889999999999998 699999999999852
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLHIV--------------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 239 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 239 (395)
+.+ ..++...+.++... +.++++++++.+++.+ +|....+++.+..++
T Consensus 176 -------p~N---~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 176 -------FSN---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLL 237 (331)
T ss_dssp -------SCC---HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHH
T ss_pred -------CCC---HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence 222 34567777777766 4578889999988875 344455666555555
Q ss_pred Hhh-----------hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH---hcCChHHHHHHHHHHHHH
Q 016114 240 SRS-----------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY---HLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 240 ~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~ 300 (395)
... +.++++++.+++++++ .|+...++..++.+.. ..|..++...++.+.+++
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 444 5678888888888774 3444555554443322 356677777787777664
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.37 E-value=1.9e-11 Score=85.93 Aligned_cols=118 Identities=18% Similarity=0.332 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+.++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+..+++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 36778999999999999999999999998762 223457889999999999999999999999876
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 157 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 157 (395)
.|....++..+|.++...|++++|..++++++.. .|....++..++.++...|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 3445678889999999999999999999999876 3444456777887776543
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.36 E-value=5.4e-11 Score=84.17 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
.++.+|.++...|++++|+..|++++.. .++++....++..+|.++...|++++|+..|++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 4677899999999999999999999886 3445555578999999999999999999999999986 34555
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
....++..+|.++...|++++|+..+++++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999985
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.34 E-value=5.7e-10 Score=91.29 Aligned_cols=243 Identities=9% Similarity=-0.080 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC-ChHHHHHHHHHHHHHHHHH
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKV 134 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~ 134 (395)
+....++..+..+....+..++|+..+.+++.+ +|....+++..+.++...| .+++++..+.+++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---- 118 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---- 118 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence 355556666666666677778999999999987 6788889999999999999 599999999999865
Q ss_pred hCCCChhHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH--------
Q 016114 135 YGENDGRVGMAMCSLAHAKCAN-G-NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-------- 204 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-------- 204 (395)
+|....+++..+.++... + ++++++.++.++++. .+.+ ..++...+.+....|.++
T Consensus 119 ----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~-------dpkN---y~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 119 ----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP-------DPKN---YHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp ----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS-------CTTC---HHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHhccccccchhhHH
Confidence 566778899999999887 7 899999999998863 2222 456677888888888887
Q ss_pred HHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc-------HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 016114 205 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN-------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277 (395)
Q Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (395)
+++++++++++. ++....+++..+.+....++ ++++++++.+++.+ +|....++..+
T Consensus 185 eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Yl 248 (349)
T 3q7a_A 185 SELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYL 248 (349)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 888888888875 45666789999999888876 78899999888873 57777888888
Q ss_pred HHHHHhcCChHH------------HHH-HHHHHHHHHHHHcCCC-----ChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114 278 GITLYHLNRDKE------------AEK-LVLEALYIREIAFGKD-----SLPVGEALDCLVSIQTRLGEDDTKLLELLKR 339 (395)
Q Consensus 278 a~~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 339 (395)
..++...|+... .+. .+....+...+..+.. .+....++..|+.+|...|+.+ +|.+.++.
T Consensus 249 r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~-~a~~~~~~ 327 (349)
T 3q7a_A 249 RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD-DAAKVFEK 327 (349)
T ss_dssp HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH-HHHHHHHH
T ss_pred HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHH
Confidence 888887776411 000 0011111111111111 1334557888999999999888 88888877
Q ss_pred HH
Q 016114 340 VL 341 (395)
Q Consensus 340 al 341 (395)
..
T Consensus 328 l~ 329 (349)
T 3q7a_A 328 LS 329 (349)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 170
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.34 E-value=3.4e-11 Score=101.37 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc--------CcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 85 (395)
...+..+..+|..++..|++++|+..|++++++..... ....+....++.++|.++...|++++|+.+++++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34567789999999999999999999999999765420 0135677889999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114 86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 164 (395)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 164 (395)
+++ .|....+++.+|.+|..+|++++|+..|++++++ .|....++..++.++...++++++..
T Consensus 300 l~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 300 LEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 5677889999999999999999999999999987 34444677788888888887777654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.34 E-value=8.3e-11 Score=83.34 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=91.7
Q ss_pred hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114 99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178 (395)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 178 (395)
..+..+..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 71 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-- 71 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--
Confidence 34567889999999999999999999999986 23445678999999999999999999999999987642
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.++......++..+|.++...|++++|+.++++++..
T Consensus 72 -~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 72 -REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344445778899999999999999999999999885
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.34 E-value=3.5e-11 Score=86.17 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 93 (395)
|..+..+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..+++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL----- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 4456778999999999999999999999999862 233568899999999999999999999999987
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
.|....++..+|.++...|++++|+..+++++.+...
T Consensus 73 ---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 ---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 4567789999999999999999999999999998655
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.32 E-value=7.2e-11 Score=84.53 Aligned_cols=103 Identities=18% Similarity=0.141 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 136 (395)
..+..+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------ 72 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------ 72 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34567889999999999999999999999987 4566789999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|....++..+|.++...|++++|+..+++++++...
T Consensus 73 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 --DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3445678999999999999999999999999998764
No 174
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.32 E-value=8.9e-11 Score=82.36 Aligned_cols=117 Identities=21% Similarity=0.372 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 567889999999999999999999999876 3445678899999999999999999999999876
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcC
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 201 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 201 (395)
.|....++..+|.++...|++++|..++++++... |+. ..++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNN---AEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCc---HHHHHHHHHHHHhcc
Confidence 23335678899999999999999999999998852 333 234567777776544
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.2e-11 Score=87.00 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=92.5
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
+|..+..++.+|..+...|++++|+.+|+++++. .++++....++..+|.++...|++++|+..+++++..
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 3556788899999999999999999999999875 3444556788999999999999999999999999987
Q ss_pred cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
.|....++..+|.++...|++++|..++++++.+
T Consensus 95 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 ----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3455788999999999999999999999999987
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.30 E-value=9.9e-11 Score=82.92 Aligned_cols=106 Identities=8% Similarity=0.152 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114 58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 137 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 137 (395)
.+..+..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...... +.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 4567889999999999999999999999986 34556789999999999999999999999999986542 22
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
+.+....++..+|.++...|++++|+.+++++++.
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 23334778999999999999999999999999985
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=2.2e-11 Score=84.93 Aligned_cols=97 Identities=14% Similarity=0.026 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
.++.+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 4677899999999999999999999987 5777889999999999999999999999999987 45
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
....++..+|.++...|++++|+..++++++..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555688999999999999999999999998753
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=9.2e-12 Score=86.83 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCC
Q 016114 273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES 352 (395)
Q Consensus 273 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 352 (395)
.+..+|..+...|++++|+..++++++.. |....++..+|.++...|+++ +|+..|++++++ .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l-----~--- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--------PEREEAWRSLGLTQAENEKDG-LAIIALNHARML-----D--- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH-----C---
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh-----C---
Confidence 46789999999999999999999999854 444567899999999999999 999999999986 2
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 353 EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 353 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
|+...++..+|.++...|++++|+..+++++++.++..
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 33456889999999999999999999999999888654
No 179
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=2.9e-10 Score=91.13 Aligned_cols=255 Identities=12% Similarity=-0.013 Sum_probs=164.6
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114 67 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 146 (395)
Q Consensus 67 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 146 (395)
.-.+..|+|..++.-..+ ..+..+. .....+.++|..+|++.... .+.|. ..+.
T Consensus 21 kn~fy~G~yq~~i~e~~~--------~~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~ 74 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEK--------FSKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVL 74 (310)
T ss_dssp HHHHTTTCHHHHTHHHHT--------SSCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHH
T ss_pred HHHHHhhHHHHHHHHHHh--------cCccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHH
Confidence 455678999888863221 1222333 34555677888888887421 12332 2233
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (395)
..++..+. ++ |+..+++.++. ++..+ ..+..+|.++...|++++|+.++.+.+.. + ..+
T Consensus 75 ~~la~~~~--~~---a~~~l~~l~~~-------~~~~~---~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~-~~~ 133 (310)
T 3mv2_B 75 DLYVQFLD--TK---NIEELENLLKD-------KQNSP---YELYLLATAQAILGDLDKSLETCVEGIDN-----D-EAE 133 (310)
T ss_dssp HHHHHHHT--TT---CCHHHHHTTTT-------SCCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----S-CST
T ss_pred HHHHHHhc--cc---HHHHHHHHHhc-------CCCCc---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----C-CCc
Confidence 44444332 22 66666665431 11222 22357999999999999999999987652 1 113
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc----hHHHHHHH--HHHHHhcC--ChHHHHHHHHHHH
Q 016114 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS----ISFPMLHL--GITLYHLN--RDKEAEKLVLEAL 298 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al 298 (395)
....++..++.++..+|+.+.|.+.++++.+. +|+ .-.+...+ |++....| ++.+|...|+++.
T Consensus 134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~ 205 (310)
T 3mv2_B 134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS 205 (310)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 67788889999999999999999999987663 221 11233444 44466566 9999999999975
Q ss_pred HHHHHHcCCCChH--HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHhcchhh
Q 016114 299 YIREIAFGKDSLP--VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE--SEEVMLTLKKVVSYLDKLGRKEE 374 (395)
Q Consensus 299 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 374 (395)
+. .|. ....+.+ ++..+|+++ +|...++..++.....-..+ .|..+.++.+++.+....|+ +
T Consensus 206 ~~--------~p~~~~~~lLln---~~~~~g~~~-eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~ 271 (310)
T 3mv2_B 206 QT--------FPTWKTQLGLLN---LHLQQRNIA-EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--D 271 (310)
T ss_dssp TT--------SCSHHHHHHHHH---HHHHHTCHH-HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred Hh--------CCCcccHHHHHH---HHHHcCCHH-HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence 42 232 2222333 899999999 99999997776543210000 24457788888888888997 8
Q ss_pred hchhhHHHHHHHHHHH
Q 016114 375 KFPLKKRLSNLRMKYK 390 (395)
Q Consensus 375 A~~~~~~a~~~~~~~~ 390 (395)
|.++++++.+..|++.
T Consensus 272 a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 272 TEDLTNQLVKLDHEHA 287 (310)
T ss_dssp THHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 9999999988766543
No 180
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.28 E-value=1.2e-10 Score=80.74 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
.+..++.+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 35678899999999999999999999998862 223557889999999999999999999999986
Q ss_pred CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 016114 96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 152 (395)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 152 (395)
.|....++..+|.++...|++++|...++++++. .|....++..++.+
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNM 115 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHh
Confidence 4556778999999999999999999999999875 23333455555554
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.28 E-value=9.1e-11 Score=98.76 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc--------CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH
Q 016114 57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 128 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (395)
..+..+..+|..+...|++++|+..|++++.+..... ....+....++.++|.++..+|++++|+.++++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3456688899999999999999999999999655420 01246677899999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114 129 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 208 (395)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (395)
++ +|....++..+|.+|...|++++|+..|++++++. ++. ..++..++.++...++++++..
T Consensus 301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~---~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PED---KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 75 45567889999999999999999999999999863 333 3345778888888888777654
No 182
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=1.9e-08 Score=90.76 Aligned_cols=231 Identities=12% Similarity=0.118 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Q 016114 119 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV-ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 197 (395)
Q Consensus 119 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~ 197 (395)
.....|++++.. .|.....+...+..+...|+.++|. ..|++|+..+ |.. ...+...+...
T Consensus 327 Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-------P~s---~~Lwl~~a~~e 388 (679)
T 4e6h_A 327 RMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-------PNS---AVLAFSLSEQY 388 (679)
T ss_dssp HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------TTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHH
Confidence 345678888775 3445567888888888999999997 9999998743 222 33457788899
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhh------CCCC--------hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114 198 HIVGRGQEGRELLEECLLITEKYK------GKEH--------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 263 (395)
Q Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 263 (395)
...|++++|..+|++++....... .+.. .....+|...+.+..+.|+.+.|..+|.+|+...
T Consensus 389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---- 464 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---- 464 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Confidence 999999999999999998642111 0110 1244567778888888999999999999998720
Q ss_pred CCCCcchHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114 264 GPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 342 (395)
Q Consensus 264 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 342 (395)
.+.....+...|.+....| +.+.|..+|+++++.. ++.+.. +...+......|+.+ .|..+|++++.
T Consensus 465 ---~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-----p~~~~~---w~~y~~fe~~~~~~~-~AR~lferal~ 532 (679)
T 4e6h_A 465 ---KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-----ATDGEY---INKYLDFLIYVNEES-QVKSLFESSID 532 (679)
T ss_dssp ---GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TTCHHH---HHHHHHHHHHHTCHH-HHHHHHHHHTT
T ss_pred ---CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCchHH---HHHHHHHHHhCCCHH-HHHHHHHHHHH
Confidence 1223445566676666665 4899999999999976 444443 456666777889988 99999999986
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114 343 IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 388 (395)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 388 (395)
.. ++.......+......-...|+.+.+..+.+++.+..++
T Consensus 533 ~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 533 KI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred hc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 32 111245677777888888899999999999999887765
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.27 E-value=2e-11 Score=101.72 Aligned_cols=145 Identities=17% Similarity=0.089 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC--c-------ChHHHHHHHHHHHHHHHhhCchhHHHHHHH
Q 016114 13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--K-------TSILLVTSLLGMAKVLGSIGRAKKAVEIYH 83 (395)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 83 (395)
.+..+..+..+|..++..|++++|+..|++++.+...... . .......++.++|.++...|++++|+..++
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667888999999999999999999999999987422100 0 000011478999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-HHHCCCHHHH
Q 016114 84 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-KCANGNAEEA 162 (395)
Q Consensus 84 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A 162 (395)
+++.+ .|....+++++|.++..+|++++|+..|++++.+ .|....++..++.+ ....+..+++
T Consensus 255 ~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 255 IVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 4667789999999999999999999999999876 34445567777777 4455677888
Q ss_pred HHHHHHHHHHH
Q 016114 163 VELYKKALRVI 173 (395)
Q Consensus 163 ~~~~~~a~~~~ 173 (395)
...|.+++...
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888887753
No 184
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-10 Score=82.87 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 219 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (395)
+.....+..+|..+...|++++|+..|+++++. .++++....++.++|.++...|++++|+..+++++...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 95 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-- 95 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--
Confidence 456678899999999999999999999999873 34554556788999999999999999999999998862
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 016114 220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 282 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 282 (395)
|....++..+|.++...|++++|..++++++.+ .|....++..++.+..
T Consensus 96 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 ------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISG 144 (148)
T ss_dssp ------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHC
T ss_pred ------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHh
Confidence 334667889999999999999999999999884 3444555566665543
No 185
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.23 E-value=7.4e-10 Score=76.68 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
+..+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|...+++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 456888999999999999999999999986 3555778999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.|....++..+|.++...|++++|...++++++.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3444567899999999999999999999999874
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.20 E-value=7.2e-11 Score=98.36 Aligned_cols=143 Identities=17% Similarity=0.086 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC-CC--------ChhhhhhHHhHHHHHHHcCChHHHHHHHHH
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TE--------SADLVLPLFSLGSLFIKEGKAVDAESVFSR 126 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (395)
+..+..+..+|..++..|++++|+..|++++.+...... .. ......++.++|.++...|++++|+.++++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677889999999999999999999999987311000 00 000113889999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH-HHHcCChHH
Q 016114 127 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL-LHIVGRGQE 205 (395)
Q Consensus 127 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~ 205 (395)
++.+ +|....+++++|.+|...|++++|+..|++++++.. ++ ..++..++.+ ....+..++
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-------~~---~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-------DD---KAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CC---HHHHHHHHHHHHHHHHHHHH
Confidence 9987 455567899999999999999999999999987632 22 2344667766 344567778
Q ss_pred HHHHHHHHHHH
Q 016114 206 GRELLEECLLI 216 (395)
Q Consensus 206 A~~~~~~al~~ 216 (395)
+...|.+++..
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888887765
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.20 E-value=5.3e-11 Score=82.57 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=76.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114 29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 108 (395)
Q Consensus 29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 108 (395)
..|++++|+.+|++++++ +.++|....++..+|.++...|++++|+..++++++. .|....++..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999874 2235788899999999999999999999999999987 466678999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH
Q 016114 109 SLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999873
No 188
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=7.3e-09 Score=83.08 Aligned_cols=182 Identities=11% Similarity=0.024 Sum_probs=127.5
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 180 (395)
..++..+|.++...|++++|+..+.+++.. + +.+....+...++.++...|+.+.|.+.++++.+..
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~-~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~------- 166 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDN-----D-EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI------- 166 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----S-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----C-CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 344578999999999999999999998643 1 114677888899999999999999999999986642
Q ss_pred CC---chHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhhhCCCChh--HHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114 181 LD---DSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLR 253 (395)
Q Consensus 181 ~~---~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~ 253 (395)
++ ......+...-|.+....| ++.+|..+|+++... .|. ....+.+ ++..+|++++|...++
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------FPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------SCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------CCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 21 0111112222344455556 999999999996542 232 2233333 8999999999999999
Q ss_pred HHHHHHHHhhCCC--CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 016114 254 ICLDIMTKTVGPD--DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 313 (395)
Q Consensus 254 ~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 313 (395)
.++.........+ .|....++.+++.+....|+ +|.+++.++.+.. |+||.+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-----P~hp~i~ 290 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-----HEHAFIK 290 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-----CCCHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-----CCChHHH
Confidence 7665432210000 25667788888888888997 8888888887744 7887653
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=1.9e-10 Score=79.69 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=75.4
Q ss_pred HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 016114 199 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 278 (395)
Q Consensus 199 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 278 (395)
..|++++|+.+|++++++ +.++|....++.++|.++...|++++|+..+++++.+ .|....++..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999874 1225778889999999999999999999999999984 456678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHH
Q 016114 279 ITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999865
No 190
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.15 E-value=2.1e-10 Score=78.71 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=86.4
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+++++++.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 69 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV----- 69 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 455678899999999999999999999999986 2334567899999999999999999999999984
Q ss_pred cCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLI 216 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 216 (395)
.+. .....++..+|.++... |++++|+.++++++..
T Consensus 70 --~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 --IED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp --SCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred --Ccc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 233 11245678999999999 9999999999998764
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=4.5e-09 Score=93.37 Aligned_cols=177 Identities=7% Similarity=-0.036 Sum_probs=147.5
Q ss_pred hhCch-hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC----------hHHHHHHHHHHHHHHHHHhCCCC
Q 016114 71 SIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 71 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
..|++ ++|+..+.+++.+ .|....+++..+.++...|+ +++++..+.+++.. +
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~ 103 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N 103 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------C
Confidence 44544 5779999999987 67888999999999999988 89999999999876 5
Q ss_pred hhHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 016114 140 GRVGMAMCSLAHAKCANG--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLI 216 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 216 (395)
|....++...+.++...| ++++++.+++++++... .. ..+|...+.+....| .++++++++.++++.
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-------~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------RN---FHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-------cc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 777789999999999999 77999999999999632 22 567788999999999 899999999988763
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhh--------------hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 016114 217 TEKYKGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 282 (395)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 282 (395)
+|....+|+..+.++... +.++++++++.+++.+ .|....+|..++.++.
T Consensus 174 --------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 174 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLG 237 (567)
T ss_dssp --------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHS
T ss_pred --------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHh
Confidence 566677889999888774 7789999999999884 4666778899999999
Q ss_pred hcCChHH
Q 016114 283 HLNRDKE 289 (395)
Q Consensus 283 ~~g~~~~ 289 (395)
..+++++
T Consensus 238 ~~~~~~~ 244 (567)
T 1dce_A 238 RAEPHDV 244 (567)
T ss_dssp CCCCCSC
T ss_pred cCCCccc
Confidence 8888555
No 192
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.12 E-value=9.8e-11 Score=80.41 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 345678899999999999999999999986 3455678899999999999999999999999976
Q ss_pred Chh--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 016114 139 DGR--VGMAMCSLAHAKCAN-GNAEEAVELYKKALRV 172 (395)
Q Consensus 139 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 172 (395)
.|. ...++..+|.++... |++++|+.++++++..
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 233 457889999999999 9999999999998864
No 193
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.11 E-value=1.2e-07 Score=85.63 Aligned_cols=232 Identities=10% Similarity=0.015 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114 77 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE-SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 155 (395)
Q Consensus 77 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 155 (395)
.....|++++.. .|.....+...+..+...|+.++|. ..|++|+..+ |.....+...+.....
T Consensus 327 Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~ 390 (679)
T 4e6h_A 327 RMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYEL 390 (679)
T ss_dssp HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Confidence 345678888775 4567788899999999999999997 9999998752 3334567778889999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcc----cCCCC--------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 156 NGNAEEAVELYKKALRVIKDSN----YMSLD--------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 156 ~g~~~~A~~~~~~a~~~~~~~~----~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
.|++++|...|++++....... ...|. ......++...+....+.|..+.|..+|.+|++... .
T Consensus 391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~----~ 466 (679)
T 4e6h_A 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK----L 466 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----G
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----C
Confidence 9999999999999998642110 00011 012344677778888889999999999999986411 1
Q ss_pred CChhHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114 224 EHPSFVTHLLNLAASYSRSK-NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 224 ~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 302 (395)
.. ...+...|.+....+ +.+.|..+|+.+++.+ |.....+...+......|+.+.|..+|++++...
T Consensus 467 ~~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~- 534 (679)
T 4e6h_A 467 VT---PDIYLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI- 534 (679)
T ss_dssp SC---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-
T ss_pred CC---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-
Confidence 11 233445566666655 4899999999999853 2233445667777888999999999999998743
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114 303 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 345 (395)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 345 (395)
++.......+......-...|+.+ .+....+++.+.+.
T Consensus 535 ----~~~~~~~~lw~~~~~fE~~~G~~~-~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 535 ----SDSHLLKMIFQKVIFFESKVGSLN-SVRTLEKRFFEKFP 572 (679)
T ss_dssp ----SSTTHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHST
T ss_pred ----CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCC
Confidence 222244566777788888899999 89999999887653
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.06 E-value=9.6e-10 Score=78.32 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=75.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchh----------HHHHHHHHHHHHHHHhcCCCC
Q 016114 28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK----------KAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~ 97 (395)
.+.+.|++|+..+++++++ .|..+.++.++|.++...++++ +|+..|++++++ .
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 3567899999999999987 3455678999999999998764 999999999998 6
Q ss_pred hhhhhhHHhHHHHHHHcC-----------ChHHHHHHHHHHHHH
Q 016114 98 ADLVLPLFSLGSLFIKEG-----------KAVDAESVFSRILKI 130 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~ 130 (395)
|....+++++|.+|...| ++++|+.+|++|+++
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 788899999999999885 899999999999998
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=1e-08 Score=91.08 Aligned_cols=177 Identities=10% Similarity=0.025 Sum_probs=143.3
Q ss_pred hhhcH-HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCc----------hhHHHHHHHHHHHHHHHhcCCCC
Q 016114 29 TLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR----------AKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 29 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
..|++ ++|+..+.+++.+ .|....+++..+.++...|+ +++++..+.+++.. +
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~ 103 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N 103 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------C
Confidence 44444 5779999999886 34556788889999999888 89999999999886 6
Q ss_pred hhhhhhHHhHHHHHHHcC--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Q 016114 98 ADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIK 174 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~ 174 (395)
|....++...+.++...+ ++++++..+.++++. +|....++...+.+....| .++++++++.++++.
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 788899999999999999 679999999999987 5666788999999999999 899999999998873
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114 175 DSNYMSLDDSIMENMRIDLAELLHIV--------------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 240 (395)
.+.. ..++...+.++... +.++++++++.+++.+ .|....+|+.++.++.
T Consensus 174 -----~p~n---~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 174 -----NFSN---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLG 237 (567)
T ss_dssp -----TCCC---HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHS
T ss_pred -----CCCC---ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHh
Confidence 2222 45678888888775 5578899999999876 3444567888888888
Q ss_pred hhhcHHH
Q 016114 241 RSKNFVE 247 (395)
Q Consensus 241 ~~~~~~~ 247 (395)
..+++++
T Consensus 238 ~~~~~~~ 244 (567)
T 1dce_A 238 RAEPHDV 244 (567)
T ss_dssp CCCCCSC
T ss_pred cCCCccc
Confidence 8777544
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.02 E-value=3e-09 Score=75.81 Aligned_cols=87 Identities=15% Similarity=0.033 Sum_probs=74.8
Q ss_pred HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH----------HHHHHHHHHHHHHHHHhhCCCCc
Q 016114 199 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF----------VEAERLLRICLDIMTKTVGPDDQ 268 (395)
Q Consensus 199 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~ 268 (395)
+.+.+++|+..+++++++ .|....++.++|.++...+++ ++|+..|++++.+ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 456789999999999886 466678899999999999876 5999999999885 57
Q ss_pred chHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHH
Q 016114 269 SISFPMLHLGITLYHLN-----------RDKEAEKLVLEALYIR 301 (395)
Q Consensus 269 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~ 301 (395)
....+++++|.+|..+| ++++|+.+|++|+++.
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 78889999999999885 8999999999999864
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.98 E-value=5.4e-09 Score=68.53 Aligned_cols=88 Identities=16% Similarity=0.271 Sum_probs=73.2
Q ss_pred CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
++|..+.+++.+|.++...|++++|+.++++++... |....++..+|.++...|++++|+..+++++.+
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 72 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--- 72 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 345677889999999999999999999999999862 223467889999999999999999999999987
Q ss_pred hcCCCChhhhhhHHhHHHHHHHcC
Q 016114 92 NRGTESADLVLPLFSLGSLFIKEG 115 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~g 115 (395)
.|....++..+|.++...|
T Consensus 73 -----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----CTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHHHHHHhcC
Confidence 4556778888998887654
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.97 E-value=8.6e-09 Score=67.52 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 135 (395)
+....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++.+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----- 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----- 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 355678899999999999999999999999986 3555678999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCC
Q 016114 136 GENDGRVGMAMCSLAHAKCANG 157 (395)
Q Consensus 136 ~~~~~~~~~~~~~la~~~~~~g 157 (395)
.|....++.++|.++...|
T Consensus 73 ---~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ---DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---CTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHhcC
Confidence 3444567888888877654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=4.9e-10 Score=76.76 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
+..+..+|.++...|++++|+..|++++.+ .|....++.++|.++...|++++|+..+++++.+. ++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 456888999999999999999999999987 45567889999999999999999999999999762 22
Q ss_pred C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016114 139 D---GRVGMAMCSLAHAKCANGNAEEAVELYK 167 (395)
Q Consensus 139 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~ 167 (395)
+ .....++..+|.++...|++++|+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 2 1136678889999988887776655443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.6e-09 Score=73.12 Aligned_cols=101 Identities=11% Similarity=0.019 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS 350 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 350 (395)
...+..+|.++...|++++|+..|++++++. +++ ..++..+|.++...|+++ +|+..+++++.+.... .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~--~ 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----PQN---PVGYSNKAMALIKLGEYT-QAIQMCQQGLRYTSTA--E 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHH-HHHHHHHHHHTSCSST--T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCCCc--c
Confidence 4578899999999999999999999999863 333 457889999999999999 9999999999753210 0
Q ss_pred CCHHHHHHHHHHHHHHHHhcchhhhchhhHHH
Q 016114 351 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 382 (395)
Q Consensus 351 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 382 (395)
.......++..+|.++...|++++|+..+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 11223678899999999999999999887653
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.88 E-value=3.1e-08 Score=68.18 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114 76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 155 (395)
Q Consensus 76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 155 (395)
.+|+..|++++.. .|....++..+|.++...|++++|+..+++++.. .|....++..+|.++..
T Consensus 2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence 3567778777764 4566789999999999999999999999999987 34556788999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 016114 156 NGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 156 ~g~~~~A~~~~~~a~~~~~~ 175 (395)
.|++++|+..|++++++...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccc
Confidence 99999999999999998654
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.86 E-value=6.6e-08 Score=68.82 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=92.9
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114 30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 109 (395)
Q Consensus 30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 109 (395)
.+++++|+.+|+++.+. + ++. +. +|.+|...+..++|+.+|+++.+. ..+.+.+++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~-----g--~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~ 65 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-----N--EMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-----T--CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-----C--CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence 46899999999999864 2 221 22 899999999999999999999764 34578999999
Q ss_pred HHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 016114 110 LFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV 172 (395)
Q Consensus 110 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 172 (395)
+|.. .+++++|..+|+++.+. .+ ..++.++|.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9998 89999999999999864 22 4678999999999 89999999999999874
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.85 E-value=4.9e-08 Score=65.12 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=62.0
Q ss_pred ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
+|....+++.+|.++...|++++|+..|++++++ .|....++..+|.+|...|++++|+..+++++++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4667788999999999999999999999999987 3444568999999999999999999999999998654
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.84 E-value=7.3e-08 Score=66.25 Aligned_cols=84 Identities=25% Similarity=0.196 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh
Q 016114 204 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 283 (395)
Q Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 283 (395)
++|+..|++++.. .|....++..+|.++...|++++|+..+++++.+ .|....++..+|.++..
T Consensus 2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence 3577778877763 3445678999999999999999999999999984 45667789999999999
Q ss_pred cCChHHHHHHHHHHHHHHHH
Q 016114 284 LNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 284 ~g~~~~A~~~~~~al~~~~~ 303 (395)
.|++++|+..|++++.+...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccc
Confidence 99999999999999987644
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.83 E-value=5.2e-08 Score=69.32 Aligned_cols=110 Identities=9% Similarity=-0.011 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 016114 201 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 280 (395)
Q Consensus 201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 280 (395)
+++++|+.+|+++.+. .++.. . +|.+|...+..++|+.+|+++.+. ....++.+||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-------g~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-------NEMFG---C--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-------TCTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-------CCHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 4678999999998764 23322 2 999999999999999999999872 345688999999
Q ss_pred HHh----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHH
Q 016114 281 LYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 281 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~ 343 (395)
|.. .+++++|+.+|+++.+. .+ ..+...||.+|.. .++++ +|+.+|+++.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~-~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEK-QAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHH-HHHHHHHHHHHC
Confidence 998 89999999999999762 23 3468899999999 88888 999999999873
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.81 E-value=5.6e-08 Score=64.85 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 303 (395)
|....++..+|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+..+++++++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 455678899999999999999999999999984 4566678999999999999999999999999998754
No 207
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.70 E-value=2.8e-06 Score=74.38 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=121.7
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHH
Q 016114 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------AEEAVELYKKALRVIK 174 (395)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~a~~~~~ 174 (395)
+..+-..+.+.|++++|..+|+++.+. | -.|+ ..+++.+-.++...+. .++|..+|++....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence 455567788999999999999998764 1 1233 3456666666655443 67888888876652
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114 175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 254 (395)
...|+ ..+++.+...|.+.|++++|..++++.... | -.| ...+++.+...|.+.|+.++|.+++++
T Consensus 100 ---G~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g-~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 100 ---KVVPN----EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----G-IQP-RLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp ---TCCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T-CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-ccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 12222 235678889999999999999999886542 1 123 345688888999999999999999998
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
..+. .-.| ...++..|...+.+.|+.++|.+++++..+
T Consensus 166 M~~~------G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 166 MVES------EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHT------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhc------CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 7651 2233 345788899999999999999999988754
No 208
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.67 E-value=1.2e-06 Score=76.74 Aligned_cols=167 Identities=13% Similarity=-0.004 Sum_probs=121.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh---------hhcHHHHHHHHHHHHHHHH
Q 016114 190 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR---------SKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~a~~~~~ 260 (395)
+..+-..+.+.|++++|+.+|++..+. | -.|+ ..+++.+-.++.. .+..++|.++|++....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence 355567888999999999999987653 1 1222 3355556555543 34578888888876541
Q ss_pred HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 340 (395)
Q Consensus 261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 340 (395)
.-.| ...++..+...|.+.|++++|..++++..+. .-.|+ ..++..+-..+.+.|+.+ +|.++|++.
T Consensus 100 ----G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~~~g~~~-~A~~l~~~M 166 (501)
T 4g26_A 100 ----KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFCRKGDAD-KAYEVDAHM 166 (501)
T ss_dssp ----TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHHHCCCHH-HHHHHHHHH
Confidence 1223 3457888999999999999999999887542 11222 356888889999999999 999999987
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114 341 LRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 385 (395)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 385 (395)
.+. - -.|+ ..++..|...|.+.|+.++|..++++..+.
T Consensus 167 ~~~---G---~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES---E---VVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT---T---CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc---C---CCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 652 1 2222 457888999999999999999999987653
No 209
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.65 E-value=1.9e-05 Score=65.84 Aligned_cols=212 Identities=12% Similarity=0.077 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhCCC
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEN 138 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 138 (395)
.+...+|..|...|++++-..++.......... .....+.....+-..+.. -+..+.-.+.+..+++.+.. +
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~----~ 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ----E 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----H
Confidence 467789999999999999888887765443221 122333344444444433 34556667777777777654 2
Q ss_pred ChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 139 DGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 139 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
...... .-..+|.+|...|+|.+|...+.+..+-+++. ++...+..++.....+|...+++.++...+.++...
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL----DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 233333 34589999999999999999999999988753 456778888889999999999999999999999888
Q ss_pred HHhhhCCCChh-HHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCCh
Q 016114 217 TEKYKGKEHPS-FVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 287 (395)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 287 (395)
..... .+|. .+.....-|.++. ..++|.+|..+|-++..-+... ..|....+...++.+-...++.
T Consensus 169 ~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 169 ANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred hccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence 76542 3443 3444555677888 8999999999999987654322 2333334444455555555553
No 210
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.64 E-value=6.1e-05 Score=62.83 Aligned_cols=213 Identities=9% Similarity=0.016 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh-CchhHHHHHHHHHHHHHHHhcCC
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-GRAKKAVEIYHRVITILELNRGT 95 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~ 95 (395)
-.+...+|..|...|++++-..++......+... .....+.....+-..+... +..+.-.+.+..+++.++..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--- 92 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--- 92 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence 3667899999999999999988887765554332 2334555555555555443 45566667777777766541
Q ss_pred CChhhhh--hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 96 ESADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 96 ~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
...... .-..+|..|...|+|.+|...+.+....+++. ++......++..-..+|...+++.++...+.++....
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 122222 44589999999999999999999999887663 3455678888889999999999999999999998887
Q ss_pred HhcccCCCCchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc
Q 016114 174 KDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 244 (395)
... .+++...+.....-|..+. ..++|.+|..+|-++..-+... ..+....+...++.+-...++
T Consensus 170 ~ai---~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 170 NAI---YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHS---CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred ccC---CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence 542 2555666777777788888 8999999999999987655432 234333333444444444444
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.56 E-value=2.9e-07 Score=61.20 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=67.9
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhh-hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114 63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 141 (395)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 141 (395)
...|..+...|++++|+..+++++.. .|.... ++..+|.++...|++++|+..|++++.+ .++++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~ 70 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA 70 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH
Confidence 45688899999999999999999886 455566 8999999999999999999999999987 233332
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174 (395)
Q Consensus 142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 174 (395)
++.+ +.+.+++..|+++.....
T Consensus 71 ---~~~~--------~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 71 ---LQAR--------KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp ---HHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred ---HHHH--------HHHHHHHHHHHHHhccCc
Confidence 2221 556777777777766543
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.55 E-value=1.2e-06 Score=58.66 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 97 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 97 (395)
.-++.+|..++..|+|..|+.+|++|++....... ..+....++..+|.++...|++++|+.++++++.+ .
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence 44689999999999999999999999988654311 12345678899999999999999999999999987 3
Q ss_pred hhhhhhHHhHH
Q 016114 98 ADLVLPLFSLG 108 (395)
Q Consensus 98 ~~~~~~~~~l~ 108 (395)
|....+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 44444555554
No 213
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.53 E-value=0.00024 Score=62.17 Aligned_cols=213 Identities=10% Similarity=0.041 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Q 016114 118 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 197 (395)
Q Consensus 118 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~ 197 (395)
......|++++..+ |.....+...+..+...|+.++|...|++|+.. . ....+ +...+..
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-------~~~~l---~~~y~~~- 255 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-------DGMFL---SLYYGLV- 255 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------CSSHH---HHHHHHH-
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-------CcHHH---HHHHHhh-
Confidence 34566788877652 333566778888899999999999999999985 2 22221 1111211
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhh---C--CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH
Q 016114 198 HIVGRGQEGRELLEECLLITEKYK---G--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 272 (395)
Q Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~---~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 272 (395)
.+.++. ++...+...... + .........+...+....+.++.+.|...|+++ . . + +....
T Consensus 256 ---~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~--~--~~~~~ 320 (493)
T 2uy1_A 256 ---MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----N--E--GVGPH 320 (493)
T ss_dssp ---TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----T--S--CCCHH
T ss_pred ---cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----C--C--CCChH
Confidence 111221 222222110000 0 011223456777778887888999999999988 3 1 1 12344
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCC
Q 016114 273 PMLHLGITLYHLN-RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE 351 (395)
Q Consensus 273 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 351 (395)
.+...|.+-...+ +.+.|...|+.+++.. ++.|.. +...+......|+.+ .|...|+++. .
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~~---~~~yid~e~~~~~~~-~aR~l~er~~---------k 382 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTLL---KEEFFLFLLRIGDEE-NARALFKRLE---------K 382 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHHH---HHHHHHHHHHHTCHH-HHHHHHHHSC---------C
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHcCCHH-HHHHHHHHHH---------H
Confidence 5555666666655 6999999999998853 444543 334566677888888 8888888862 2
Q ss_pred CHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114 352 SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386 (395)
Q Consensus 352 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 386 (395)
+ ...+......-...|+.+.+...++++....
T Consensus 383 ~---~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 383 T---SRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp B---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 2 3445555556666788888888888887643
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.50 E-value=3.1e-07 Score=61.02 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHH-HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT-SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 99 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (395)
+..|..+...|++++|+..|+++++.. + .... ++..+|.++...|++++|+..|++++.+ .|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE-----P---VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-----S---STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-----C---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 567899999999999999999999862 2 2345 7889999999999999999999999987 333
Q ss_pred hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131 (395)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (395)
...++.. +.+.++...|+++....
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhccC
Confidence 3333322 45667777777766553
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.46 E-value=4.2e-06 Score=55.98 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.-++.+|..++..|+|..|+.++++|++..... .........++..+|.++...|++++|+.++++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~---~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEG---EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc---CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456789999999999999999999999987542 1112344577899999999999999999999999986
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.46 E-value=2e-05 Score=64.59 Aligned_cols=133 Identities=12% Similarity=0.040 Sum_probs=91.3
Q ss_pred HHHHHHHHh---hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh---C-chhHHHHHHHHHHHHHHHhc
Q 016114 21 LHMGSMYST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---G-RAKKAVEIYHRVITILELNR 93 (395)
Q Consensus 21 ~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~al~~~~~~~ 93 (395)
+..|..+.. ..++.+|+.+|++|+++ +|..+.++..++.++... + ..........+++.....
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a-- 269 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT-- 269 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--
Confidence 344555554 35568999999999987 344445555555555422 1 111222233333332211
Q ss_pred CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
....|..+.++..++..+...|++++|+..+++++.+ + +. ..++..+|.++...|++++|++.|.+|+.+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------n-~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------E-MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------C-CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------C-CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1234666778888888888899999999999999998 1 33 456788999999999999999999999986
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.27 E-value=1.7e-05 Score=51.42 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=58.8
Q ss_pred ChhhhhhHHhHHHHHHHcCC---hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 97 SADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.|..+..+..+|.+++..++ .++|...+++++.+ +|....++..+|..++..|+|++|+.+++++++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556788888999877666 79999999999997 6777788999999999999999999999999874
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.24 E-value=1.8e-05 Score=62.06 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHh-----hC------chhHHHHHHHHHHHHHHHhcCCCChh--hhhhHHhHHHHHHHc-----CChH
Q 016114 57 LLVTSLLGMAKVLGS-----IG------RAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKE-----GKAV 118 (395)
Q Consensus 57 ~~~~~~~~l~~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~ 118 (395)
..+..++..|..+.. .| ....|...+++++++ +|. ...++..+|.+|... |+.+
T Consensus 150 ~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~e 221 (301)
T 3u64_A 150 VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGME 221 (301)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHH
Confidence 345556666555432 12 356777888888887 444 567999999999995 9999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q 016114 119 DAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCA-NGNAEEAVELYKKALRV 172 (395)
Q Consensus 119 ~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~ 172 (395)
+|..+|++++++ +|. ...++...|..+.. .|++++|..++++++..
T Consensus 222 kA~~~ferAL~L--------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 222 KAHTAFEHLTRY--------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHH--------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 999999999998 333 25667788888887 59999999999999985
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.22 E-value=0.00011 Score=52.12 Aligned_cols=128 Identities=15% Similarity=0.035 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (395)
.++..-.......|.|+.|+.....++.+..... ....+.....++..+|..++..|+|..|...|++++...+.....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566777899999999999999988876431 111345566788899999999999999999999999987643211
Q ss_pred -----------------CChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 016114 224 -----------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 281 (395)
Q Consensus 224 -----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 281 (395)
+.+......+.++.||.+.+++++|+..++.. +....+..+...||.+|
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 11223467788999999999999999987643 12234455556677665
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.20 E-value=3.6e-05 Score=63.08 Aligned_cols=132 Identities=8% Similarity=0.027 Sum_probs=91.8
Q ss_pred HHHHHHHhh---CchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc---C-ChHHHHHHHHHHHHHHHHHhC
Q 016114 64 GMAKVLGSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---G-KAVDAESVFSRILKIYTKVYG 136 (395)
Q Consensus 64 ~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~al~~~~~~~~ 136 (395)
..|..+... ..+.+|+.+|++++++ +|..+.++..++.+|... + .......-+.+++..... .
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~ 270 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--L 270 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--c
Confidence 334545444 4468999999999997 677777777777776532 1 111222333334432211 1
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
...+..+.++..++..+...|++++|+..+++|+.+. ++ ...+..+|.++...|++++|++.|.+|+.+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-------MS----WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2234555677788888888899999999999999962 22 345578899999999999999999999987
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.20 E-value=1.4e-05 Score=51.89 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhCc---hhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 59 VTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 59 ~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
...+..+|.+++..++ .++|...+++++.+ +|....++..+|..++..|+|++|+.+++++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567778888876655 79999999999997 7888899999999999999999999999999875
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.18 E-value=0.0001 Score=52.27 Aligned_cols=109 Identities=10% Similarity=-0.021 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc-ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC-
Q 016114 18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT- 95 (395)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 95 (395)
.++..-....+..|.|+.|+.....++.+....... .......++..+|..++..|+|..|...|++++...+.+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445667777889999999999999988886553221 233678889999999999999999999999999987643211
Q ss_pred ----------------CChhhhhhHHhHHHHHHHcCChHHHHHHHHH
Q 016114 96 ----------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSR 126 (395)
Q Consensus 96 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (395)
+.+...++.+.++.||...+++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1122236778999999999999999988764
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.17 E-value=0.0011 Score=52.24 Aligned_cols=85 Identities=13% Similarity=-0.076 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 016114 244 NFVEAERLLRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHL-----NRDKEAEKLVLEALYIREIAFGKDSLPVGEAL 316 (395)
Q Consensus 244 ~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 316 (395)
....|...+++++++ +|. ...++..+|.+|... |+.++|..+|++++++. ++. ...+.
T Consensus 178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~--~id~~ 242 (301)
T 3u64_A 178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAH--DPDHH 242 (301)
T ss_dssp HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTT--CSHHH
T ss_pred hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCC--CchHH
Confidence 457888888888885 344 566899999999995 99999999999999975 332 13457
Q ss_pred HHHHHHHHHc-CCchhHHHHHHHHHHHHH
Q 016114 317 DCLVSIQTRL-GEDDTKLLELLKRVLRIQ 344 (395)
Q Consensus 317 ~~l~~~~~~~-~~~~~~A~~~~~~al~~~ 344 (395)
...|..+... |+++ +|..++++++..-
T Consensus 243 v~YA~~l~~~~gd~~-~a~~~L~kAL~a~ 270 (301)
T 3u64_A 243 ITYADALCIPLNNRA-GFDEALDRALAID 270 (301)
T ss_dssp HHHHHHTTTTTTCHH-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCHH-HHHHHHHHHHcCC
Confidence 7888888874 8888 9999999999853
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.09 E-value=9.5e-05 Score=52.10 Aligned_cols=68 Identities=21% Similarity=0.117 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 227 SFVTHLLNLAASYSRSK---NFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
....+.+++|.++.+.+ +.++++.+++..++. +.| ....++++||..+.+.|+|++|..++++++++.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 35578889999999977 777999999998873 234 567899999999999999999999999999865
No 225
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.08 E-value=0.0046 Score=54.15 Aligned_cols=216 Identities=12% Similarity=0.042 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114 76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 155 (395)
Q Consensus 76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 155 (395)
......|++++.. .|.....+...+..+...|+.++|...|++++.. |.+... +...+.. ..
T Consensus 196 ~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~l---~~~y~~~-~e 257 (493)
T 2uy1_A 196 SRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMFL---SLYYGLV-MD 257 (493)
T ss_dssp HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHH---HHHHHHH-TT
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHHH---HHHHHhh-cc
Confidence 3456678887765 2444677888899999999999999999999976 222222 1111211 11
Q ss_pred CCCHHHHHHHHHHHHHHH---HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH
Q 016114 156 NGNAEEAVELYKKALRVI---KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 232 (395)
Q Consensus 156 ~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (395)
.+ +. +++..+.. ...............++...+....+.++.+.|...|+++ .. . . .....+
T Consensus 258 ~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~--~--~~~~v~ 322 (493)
T 2uy1_A 258 EE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----E--G--VGPHVF 322 (493)
T ss_dssp CT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----S--C--CCHHHH
T ss_pred hh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----C--C--CChHHH
Confidence 11 11 22222211 0000000012223456677777777888999999999988 21 1 1 123345
Q ss_pred HHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 016114 233 LNLAASYSRSK-NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 311 (395)
Q Consensus 233 ~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 311 (395)
...|.+....+ +.+.|..+|+.++..+ ++.| ..+...+......|+.+.|..+|+++. .+.
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~---~~~~~yid~e~~~~~~~~aR~l~er~~---------k~~- 384 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDST---LLKEEFFLFLLRIGDEENARALFKRLE---------KTS- 384 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCHHHHHHHHHHSC---------CBH-
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH---------HHH-
Confidence 55566666666 5999999999998842 2333 334456677788999999999998872 222
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114 312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 345 (395)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~ 345 (395)
..+......-...|+.+ .+...++++++...
T Consensus 385 --~lw~~~~~fE~~~G~~~-~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 385 --RMWDSMIEYEFMVGSME-LFRELVDQKMDAIK 415 (493)
T ss_dssp --HHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCHH-HHHHHHHHHHHHhc
Confidence 33445555566679887 88889999988665
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.07 E-value=0.00034 Score=49.34 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHH
Q 016114 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEALYIREIAFGKDSL-PVGEALDCLV 320 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~ 320 (395)
...+.+.|.+.+. ..+....+.+++|.++.+.+ +.++++.+++..++. +.| ...+.++.||
T Consensus 14 l~~~~~~y~~e~~--------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKA--------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHH--------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence 3444555555443 23356778899999999988 666899999888773 224 5577899999
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114 321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT 358 (395)
Q Consensus 321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 358 (395)
..+.+.|+++ +|..++++++++ .|+++.....
T Consensus 79 v~~~kl~~Y~-~A~~y~~~lL~i-----eP~n~QA~~L 110 (152)
T 1pc2_A 79 VGNYRLKEYE-KALKYVRGLLQT-----EPQNNQAKEL 110 (152)
T ss_dssp HHHHHTSCHH-HHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred HHHHHccCHH-HHHHHHHHHHhc-----CCCCHHHHHH
Confidence 9999999999 999999999986 3555544333
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.014 Score=50.23 Aligned_cols=216 Identities=11% Similarity=-0.064 Sum_probs=129.9
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHH
Q 016114 115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 194 (395)
Q Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la 194 (395)
|++++|++.+....+..+ .+.+.+....+...+..++...|+++...+.+.-.. ++ .+........+...+-
T Consensus 30 ~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kk---r~qlk~ai~~~V~~~~ 101 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KK---HGQLKLSIQYMIQKVM 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TT---TTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HH---hhhhHHHHHHHHHHHH
Confidence 567777765543332222 234556667788888999999999988766554321 11 1222222222211111
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhhhC-CC--ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC-Ccch
Q 016114 195 ELLHIVGRGQEGRELLEECLLITEKYKG-KE--HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD-DQSI 270 (395)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~ 270 (395)
.........+.. .....+........ .- ....+.....|+.++...|++.+|...+..... +..+.. ....
T Consensus 102 ~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~k 176 (445)
T 4b4t_P 102 EYLKSSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEK 176 (445)
T ss_dssp HHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHH
T ss_pred HHHhcCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHH
Confidence 222222222221 11122222111111 11 122456667899999999999999999987653 333332 2344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~ 346 (395)
...+.....++...+++.+|...+.++....... +.+|. ....+...|.++...+++. +|..+|..+...+..
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~-~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYL-EVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhcccc
Confidence 6677788899999999999999999886544332 33444 3455677899999999999 999999998876544
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.019 Score=49.36 Aligned_cols=218 Identities=11% Similarity=0.006 Sum_probs=132.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114 29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 108 (395)
Q Consensus 29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 108 (395)
..|+++.|++-+....+..+ .+.+.+....++..+..++...|+++...+.+.-.. +..+. .+..........
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls----kkr~q-lk~ai~~~V~~~ 100 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS----KKHGQ-LKLSIQYMIQKV 100 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH----TTTTT-SHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHhhh-hHHHHHHHHHHH
Confidence 35888888876644333322 234445566777888889999999988766553221 11111 111111111111
Q ss_pred HHHH-HcCChHHHHHHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114 109 SLFI-KEGKAVDAESVFSRILKIYTKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184 (395)
Q Consensus 109 ~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 184 (395)
.-+. .....+. ......+.......... ....+.....|+.++...|++.+|...+.....-.. ...+..
T Consensus 101 ~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~----~~~~~~ 174 (445)
T 4b4t_P 101 MEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY----GSMEMS 174 (445)
T ss_dssp HHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----SSSCHH
T ss_pred HHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH----hcccHH
Confidence 1111 1222211 11112222111111110 112456677899999999999999999998764332 234455
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261 (395)
Q Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 261 (395)
....++.....++...+++.+|...++++........ .+|. ....+...|.++...++|.+|..+|.++......
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~--~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP--KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC--CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 6677888899999999999999999998755433322 3333 4556678899999999999999999998875443
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.44 E-value=0.0075 Score=41.95 Aligned_cols=110 Identities=11% Similarity=0.114 Sum_probs=80.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhcH------HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHH
Q 016114 9 LKDDEPLLDAILLHMGSMYSTLENY------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82 (395)
Q Consensus 9 l~~~~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 82 (395)
+.+.+|+....|..+ ....|+. ++-++.|++|+...+..........+..+...|.. ...++.++|...|
T Consensus 8 ~~p~~yd~W~~yl~l---lE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy 83 (161)
T 4h7y_A 8 MMANNPEDWLSLLLK---LEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYF 83 (161)
T ss_dssp --CCSHHHHHHHHHH---HHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred eCCCCHHHHHHHHHH---HHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence 456677665554444 3344777 88888999988765433222334667777777755 5669999999999
Q ss_pred HHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 83 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
+.++.+ +...+.++...|..-.++|+...|.+.+.+++.+
T Consensus 84 ~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 84 QMARAN--------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHH--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 999986 2334888889999999999999999999999986
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.42 E-value=0.00071 Score=45.81 Aligned_cols=76 Identities=12% Similarity=-0.037 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114 313 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
..+.+.+|.++.+..+.. ..++.+.+.+.++....| ...+.++.||..+.+.|+|++|..+++..+++.|...+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~-----d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYND-----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHTTSSSHH-----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 456789999999887665 345666666666666546 67889999999999999999999999999999887665
Q ss_pred hh
Q 016114 392 KV 393 (395)
Q Consensus 392 ~~ 393 (395)
+.
T Consensus 110 A~ 111 (126)
T 1nzn_A 110 AK 111 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.34 E-value=0.012 Score=40.90 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCh------HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC
Q 016114 191 IDLAELLHIVGRG------QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 264 (395)
Q Consensus 191 ~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 264 (395)
..........|+. ++-++.|++|+..............+..+...|.. ...++.++|.+.|+.++.+
T Consensus 17 ~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------ 89 (161)
T 4h7y_A 17 LSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------ 89 (161)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------
T ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------
Confidence 3444555556887 77778888887764332223445567777777765 5669999999999999884
Q ss_pred CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 265 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 265 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
+...+.++...|..-.++|+...|.+.+.+++.+
T Consensus 90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 3334889999999999999999999999999884
No 232
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.019 Score=49.12 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=88.8
Q ss_pred hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114 98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177 (395)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 177 (395)
.....++..+|..|...|++++|.+.|.++...+. ........+..+..++...+++..+..++.++......
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-- 200 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-- 200 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence 34567888999999999999999999999877642 23456678888889999999999999999999877653
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
++++..........|.++...++|.+|-..|-.+...
T Consensus 201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3455555566667788888999999999999887654
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.013 Score=50.20 Aligned_cols=106 Identities=18% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114 188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 267 (395)
Q Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 267 (395)
.++..+|..|...|++++|.+.|.++..... ........+..+..++...+++..+..++.++....... ++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~d~ 204 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--GDW 204 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--CCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--CCH
Confidence 4557899999999999999999999776542 223466778888899999999999999999987754432 222
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 268 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 268 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
..........|.++...++|.+|..+|-.+...
T Consensus 205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 223344556677888899999999999877653
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.65 E-value=0.0017 Score=44.08 Aligned_cols=74 Identities=11% Similarity=-0.090 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCchh--HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114 313 GEALDCLVSIQTRLGEDDT--KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 390 (395)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 390 (395)
..+.+++|.++.+..+... +++.+++..+. .......+.++.||..+.+.|+|++|..+.+..+++.|...
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3567889999988876541 45555544443 23235678999999999999999999999999998877766
Q ss_pred hhh
Q 016114 391 QKV 393 (395)
Q Consensus 391 ~~~ 393 (395)
++.
T Consensus 113 QA~ 115 (134)
T 3o48_A 113 QVG 115 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 235
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.49 E-value=0.043 Score=51.50 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 263 (395)
Q Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 263 (395)
......++.+-..|.+.|+.++|..++.+..+...+-. .|+ ..+|+.|...|.+.|++++|.++|++....
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----- 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA----- 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 34455678899999999999999999987654432222 232 457889999999999999999999988651
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 016114 264 GPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALY 299 (395)
Q Consensus 264 ~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~ 299 (395)
+-.|+ ..+|..+-.++.+.|+. ++|.+++++..+
T Consensus 195 -G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 195 -GLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp -TCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -CCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 23344 45788888889999985 788888887654
No 236
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.46 E-value=0.07 Score=50.13 Aligned_cols=107 Identities=10% Similarity=-0.056 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 304 (395)
......+++.+...|++.|+.++|..+|.+......+- -.|+ ..+|..|...|.+.|+.++|.++|++..+.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---- 194 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---KLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA---- 194 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---TTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---CCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence 34456678899999999999999999998765432222 1233 458899999999999999999999987652
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114 305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 342 (395)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~ 342 (395)
.-.|+ ..+|..+-..+.+.|+..++|.+++++..+
T Consensus 195 --G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 195 --GLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp --TCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --CCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 12233 356788888899999863278888888765
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.40 E-value=0.12 Score=35.06 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
....+.+++|+++.+..+... .++.+.+....+..+.| ..-..++.||..+.+.|++. +|..+++..+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~-~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE-KALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHh
Confidence 456788999999999887665 23444444444444545 56788999999999999999 999999999986
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.39 E-value=0.0023 Score=44.13 Aligned_cols=74 Identities=11% Similarity=-0.076 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHcCCch--hHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114 312 VGEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 389 (395)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 389 (395)
...+.+++|.++.+..+.. .+++.+++..+. .......+.++.||..+.+.|+|++|..+.+..+++.|..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4467789999999887654 145555555443 2222457889999999999999999999999999887766
Q ss_pred Hhh
Q 016114 390 KQK 392 (395)
Q Consensus 390 ~~~ 392 (395)
.++
T Consensus 111 ~QA 113 (144)
T 1y8m_A 111 KQV 113 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.27 E-value=0.068 Score=50.16 Aligned_cols=76 Identities=20% Similarity=0.092 Sum_probs=51.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (395)
..+...+...|.+++|+...+.. .. ........|++++|.+..+.. ++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------------~~-------~f~~~l~~~~~~~A~~~~~~~----------~~- 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------------DQ-------KFELALKVGQLTLARDLLTDE----------SA- 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------------HH-------HHHHHHHHTCHHHHHHHHTTC----------CC-
T ss_pred HHHHHHHHhCCChHHheecCCCc--------------ch-------heehhhhcCCHHHHHHHHHhh----------Cc-
Confidence 45566677888888877654321 11 122345678998888765321 12
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114 227 SFVTHLLNLAASYSRSKNFVEAERLLRICL 256 (395)
Q Consensus 227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 256 (395)
...|..+|..+...++++.|+.+|.++-
T Consensus 681 --~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 681 --EMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred --HhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3568899999999999999999998763
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.15 Score=47.80 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=34.1
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH
Q 016114 69 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 128 (395)
Q Consensus 69 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (395)
....|++++|.+..+. ......+..+|..+...|+++.|+.+|.++-
T Consensus 662 ~l~~~~~~~A~~~~~~-------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTT-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHh-------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3456666666655321 1234578899999999999999999999863
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.80 E-value=0.36 Score=40.70 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=81.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh--------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
-|......|+.+.|...+.+|+.+++..+-++. .....+...++..+...|++.+++..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444568899999999999987643211111 123445566778888999999999999988775
Q ss_pred HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114 89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 139 (395)
+|..-..+..+-.++...|+..+|+..|++.......-+|-+.
T Consensus 201 --------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 201 --------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp --------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5666668888899999999999999999999988776666443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.63 Score=42.69 Aligned_cols=88 Identities=11% Similarity=-0.001 Sum_probs=63.6
Q ss_pred chhHHHHHHHHHHHHHHHhcC---CCC-------hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114 74 RAKKAVEIYHRVITILELNRG---TES-------ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 143 (395)
Q Consensus 74 ~~~~A~~~~~~al~~~~~~~~---~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 143 (395)
+--+|+....++++-...... ..+ +.....+...+..+...|+++-|+.+.++|+.. .|...
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF 371 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSF 371 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------Cchhh
Confidence 445677777777654322111 111 112334555678888999999999999999987 46667
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114 144 MAMCSLAHAKCANGNAEEAVELYKKA 169 (395)
Q Consensus 144 ~~~~~la~~~~~~g~~~~A~~~~~~a 169 (395)
.+|..|+.+|..+|+|+.|+-.+..+
T Consensus 372 ~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 372 ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 88999999999999999999887765
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.62 E-value=0.35 Score=40.73 Aligned_cols=105 Identities=12% Similarity=-0.088 Sum_probs=77.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhhhCCC---C-----------hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114 197 LHIVGRGQEGRELLEECLLITEKYKGKE---H-----------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 262 (395)
Q Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 262 (395)
....|+.+.|...+.+|+.+++...-++ . .....+...++..+...|++.+++..+..++..
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~---- 200 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE---- 200 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 3445778888888888877653211000 0 011234456678888999999999999888763
Q ss_pred hCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCC
Q 016114 263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 309 (395)
Q Consensus 263 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 309 (395)
+|..-..+..+-.++...|+..+|+..|++......+.+|.+.
T Consensus 201 ----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 201 ----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp ----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5666778889999999999999999999999998877777554
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.79 Score=42.05 Aligned_cols=88 Identities=8% Similarity=-0.083 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHHHHhhhC---CCC-------hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114 202 RGQEGRELLEECLLITEKYKG---KEH-------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 271 (395)
Q Consensus 202 ~~~~A~~~~~~al~~~~~~~~---~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 271 (395)
+--+|+..+.++++....... ..+ +.....+...+..+...|+++-|+.+.++|+.. .|...
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF 371 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSF 371 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------Cchhh
Confidence 344677888777754322111 111 112334555688888999999999999999884 57778
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~a 297 (395)
.+|..|+.+|...|+|+.|+-.+.-+
T Consensus 372 ~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 372 ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 89999999999999999998776554
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.26 E-value=0.97 Score=36.71 Aligned_cols=213 Identities=11% Similarity=0.077 Sum_probs=111.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHhhhCCC
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKE 224 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~ 224 (395)
+..-+..+.+.|++..|.++..-.++.+.+.. ...+. .....+..++.....-+ .=..+.++++....+. +..
T Consensus 58 L~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~----~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~ 131 (336)
T 3lpz_A 58 LASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDG----ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDY 131 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCH----HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSC
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCC
Confidence 33344455555666666666655555555431 11121 12234444444443211 2245667777766553 222
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHH--------HHHHHHHHhhCCCCcchHHHHHHH-HHHHHhcCChHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLR--------ICLDIMTKTVGPDDQSISFPMLHL-GITLYHLNRDKEAEKLVL 295 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~ 295 (395)
.......+..+|..|.+.+++.+|..+|- ...++..+......+.....+... ...|...++...|...+.
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~ 211 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYR 211 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22334556778999999999999988872 111222222222234434433333 345677899999999887
Q ss_pred HHHHHHHHHcC-----------------CCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114 296 EALYIREIAFG-----------------KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT 358 (395)
Q Consensus 296 ~al~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 358 (395)
...+...+... +..|.. . +..+...-...+. ...|+...+.+...+..+.+.....
T Consensus 212 ~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL-N-Fl~lLllt~q~~~-----~~lF~~L~~~Y~~~l~rd~~~~~~~ 284 (336)
T 3lpz_A 212 IFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL-N-FISMLLLSVQKGS-----PDLFRQLKSKYEANLNELNGIWDTA 284 (336)
T ss_dssp HHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH-H-HHHHHHHHHHSCC-----HHHHHHHHHHTHHHHHTTTTTTHHH
T ss_pred HHHHHHhhcCCCccccccccCCcccccCCCCchH-H-HHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 77765533211 112221 1 1122222233333 3456666555555444443256778
Q ss_pred HHHHHHHHHHhcc
Q 016114 359 LKKVVSYLDKLGR 371 (395)
Q Consensus 359 ~~~la~~~~~~g~ 371 (395)
+..+|..|+....
T Consensus 285 L~~IG~~YFgi~~ 297 (336)
T 3lpz_A 285 LELIAEMYFGIQR 297 (336)
T ss_dssp HHHHHHHHHCCCC
T ss_pred HHHHHHHHcCCCC
Confidence 8899999987643
No 246
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.36 Score=41.75 Aligned_cols=145 Identities=10% Similarity=0.099 Sum_probs=61.7
Q ss_pred HHHhhhcHHHHHHHHHHHH--HHHHHhc-CcChHHHHHHHHHHHHHHHhhCchhHHHHHH-------HHHHHHHHHh-cC
Q 016114 26 MYSTLENYEKSMLVYQRVI--NVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIY-------HRVITILELN-RG 94 (395)
Q Consensus 26 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~ 94 (395)
.++..+++++|..+....+ +...... ..-+...+.+|+..+.++...|+........ ...+...+.. ..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3457788999988877665 2222110 0112345666777777777777765533221 1222222222 22
Q ss_pred CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
.+....+..++.+-..|...+.+++|..+..++.- ... ...+...+..++.+|.++...++|.+|.+++..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 34455677888889999999999999999988741 100 01223467778899999999999999999999998743
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.90 E-value=1.8 Score=42.44 Aligned_cols=208 Identities=11% Similarity=-0.036 Sum_probs=119.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc-------------cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSN-------------YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
.+.+|.++...|++++|..+|+++-.-..... ...+........|..+..++...|.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 47799999999999999999988632110000 00111112234567788899999999999999999
Q ss_pred HHHHHHhhhCCCChh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHH
Q 016114 213 CLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 291 (395)
Q Consensus 213 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 291 (395)
|++.. +++++. ....+.++-..+...|+|++|...+...-+ ......++..|-......|+.+.=.
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhh
Confidence 98753 223333 233577788888999999999877643321 2223345555555555555543332
Q ss_pred H--------HHHHHHHHHH-HH-cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCC---HHHHHH
Q 016114 292 K--------LVLEALYIRE-IA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES---EEVMLT 358 (395)
Q Consensus 292 ~--------~~~~al~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~ 358 (395)
. ..+..+.... .. .....|.. +..|-..+...|++...|..+|+.+..+....-.... ......
T Consensus 992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Y---y~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~ 1068 (1139)
T 4fhn_B 992 NYSMPTLRQDVDNLLERKAFQMINVESQPCW---YNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEH 1068 (1139)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhCCccccCCCH---HHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHHH
Confidence 1 1122221111 11 01222332 3344555667788876888999998877653211111 123345
Q ss_pred HHHHHHHHHHh
Q 016114 359 LKKVVSYLDKL 369 (395)
Q Consensus 359 ~~~la~~~~~~ 369 (395)
+..+.+++.-.
T Consensus 1069 yL~~INaLslv 1079 (1139)
T 4fhn_B 1069 YLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHhcC
Confidence 55555555544
No 248
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.53 E-value=0.37 Score=41.87 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
.++..+|.+......+..|..+|.+|..+ .|..+..++.||.+....|+.-+|+-+|.+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 46778899999999999999999999987 6888899999999999999999999999998853
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.89 Score=32.97 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=64.6
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114 111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 190 (395)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (395)
....|+++.|.+..+.. ++ ...|..+|......|+++-|+.+|.++-+.
T Consensus 15 AL~lg~l~~A~e~a~~l----------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------ 63 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL----------ND---SITWERLIQEALAQGNASLAEMIYQTQHSF------------------ 63 (177)
T ss_dssp HHHTTCHHHHHHHHHHH----------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------
T ss_pred HHhcCCHHHHHHHHHHh----------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------
Confidence 35678888888775542 22 246788999999999999999999886442
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 255 (395)
..+..+|...|+.+.-....+.+... .. ++.-..++...|++++++++|.+.
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~-------g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTR-------ED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT-------TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHC-------cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 23455667777765544443333221 11 112234466788888888877643
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.48 E-value=0.77 Score=31.76 Aligned_cols=66 Identities=15% Similarity=0.037 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhCch---hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 58 LVTSLLGMAKVLGSIGRA---KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 58 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
...+.+++|+++....+. .+++.+++..+.. +......+++.+|..+.+.|+|++|..+.+..+++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345677888888777654 4566666665542 23356788999999999999999999999999986
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.32 E-value=0.79 Score=31.25 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114 270 ISFPMLHLGITLYHLNRD---KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343 (395)
Q Consensus 270 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~ 343 (395)
...+.+++|+++.+..+. .+++.+++..+. .+....-..++.||..+.+.|++. +|..+.+..+++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~-~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYS-MAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhh
Confidence 446778999999887665 356666655544 222346678999999999999999 999999998864
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.65 E-value=1.4 Score=31.89 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=65.7
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH
Q 016114 153 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 232 (395)
Q Consensus 153 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (395)
....|+++.|.+..+.. +. ...|..+|......|+++-|+.+|.++-. +
T Consensus 15 AL~lg~l~~A~e~a~~l------------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------~ 63 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------------ND---SITWERLIQEALAQGNASLAEMIYQTQHS----------------F 63 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------H
T ss_pred HHhcCCHHHHHHHHHHh------------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------H
Confidence 36789999988876543 11 34568899999999999999999987532 2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114 233 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 233 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 297 (395)
..+..+|...|+.+.-....+.+.. ..+ +.....++...|++++++++|.+.
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~-------~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQT-------RED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-------TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-------Ccc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 2344556667776654444433322 111 122234677889999998888654
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.28 Score=42.40 Aligned_cols=143 Identities=4% Similarity=-0.016 Sum_probs=62.1
Q ss_pred HHHcCChHHHHHHHHHHH--HHHHHHh-CCCChhHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHHhcccCC
Q 016114 111 FIKEGKAVDAESVFSRIL--KIYTKVY-GENDGRVGMAMCSLAHAKCANGNAEEAVEL-------YKKALRVIKDSNYMS 180 (395)
Q Consensus 111 ~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~a~~~~~~~~~~~ 180 (395)
+...+++++|..+....+ ....... -.-+.-.+.+|+..+.++...|+....... -...+...+.. ...
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta-~lr 224 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA-SLK 224 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHC-CSC
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH-hcc
Confidence 456788888888776655 2221110 001233556677777777777776653221 11222233322 244
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.+....+.+++.+-+.|...+.+++|..+..++.- ... ...+...+..++.+|.++.-+++|.+|.+++..|+.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56666777888899999999999999999887631 100 012345577788899999999999999999998875
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.13 E-value=3 Score=33.94 Aligned_cols=246 Identities=7% Similarity=-0.065 Sum_probs=135.0
Q ss_pred HHhhhcH---HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhh
Q 016114 27 YSTLENY---EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 103 (395)
Q Consensus 27 ~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 103 (395)
....|+| =+|-+.++.......+ .......++.++.-+..+...|++..|.++..-.++.+.+..-+-+ ...
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~--~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~ 96 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYSK--QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GAS 96 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHH
Confidence 3456777 6676666665544433 2344556666677777777888888888777777777666532211 234
Q ss_pred HHhHHHHHHHcCChH-HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH--------HHHHHH
Q 016114 104 LFSLGSLFIKEGKAV-DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK--------ALRVIK 174 (395)
Q Consensus 104 ~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------a~~~~~ 174 (395)
...+..++.....-+ .=..+..+++....+. +.........+..+|..|...+++.+|..+|-- ..++.-
T Consensus 97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHH
Confidence 445555554444321 2355677777776663 322222335677899999999999999887621 111111
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC-----------------CCChhHHHHHHHHHH
Q 016114 175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG-----------------KEHPSFVTHLLNLAA 237 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~~~la~ 237 (395)
+..... .+.............|...++...|...+..-.+...+... +..|..- +..+..
T Consensus 176 ew~~~~-~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLN--Fl~lLl 252 (336)
T 3lpz_A 176 EWYKQD-ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLN--FISMLL 252 (336)
T ss_dssp HHHHTS-CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHH--HHHHHH
T ss_pred HHHHhc-CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHH--HHHHHH
Confidence 110001 11222222233344577889999999888776665432111 1122211 122222
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC
Q 016114 238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 285 (395)
Q Consensus 238 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 285 (395)
+-+..+. ...|....+.+...+..+.+.....+..+|..|+...
T Consensus 253 lt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 253 LSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 3334443 3455555555554444443266777788888888654
No 255
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.99 E-value=1.8 Score=30.98 Aligned_cols=96 Identities=15% Similarity=0.023 Sum_probs=67.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH----------HHH
Q 016114 192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI----------MTK 261 (395)
Q Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------~~~ 261 (395)
.++..+.-.|.+..++-.+.. ..++.+.+.-+.+|...+++..|+..++..++- .-+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 467778889999888766542 223455566778999999999999999988731 000
Q ss_pred hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
..-.+..+....+..+|.++...|+.++|+.++......
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111111233345678899999999999999999887654
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.33 E-value=9.1 Score=37.59 Aligned_cols=105 Identities=11% Similarity=0.106 Sum_probs=73.9
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHH-------------HHHh--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY 166 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 166 (395)
...+.+|.++...|++++|..+|+++-.-. .... ..........|..+..++...|.++.++++.
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345789999999999999999998863210 0000 0011123345777888999999999999999
Q ss_pred HHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016114 167 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 211 (395)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (395)
+.|++... ..+.......+.++-..+...|+|++|...+.
T Consensus 923 ~lAi~~~~-----~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 923 LLADASKE-----TDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHCC-----SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHhcc-----CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99987531 22333334467788888999999999987764
No 257
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.13 E-value=2.4 Score=30.36 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=70.0
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH----------H
Q 016114 63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY----------T 132 (395)
Q Consensus 63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------~ 132 (395)
..++..++..|+|..++-++. .-..+.+.+.-+.||....++..|+..++..+.-- -
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred hhhhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 346778888999988876553 23456667778899999999999999999887310 0
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
..+--+..+.-..+..+|.++...|+-++|+.++......
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0011112233345778999999999999999999987764
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.00 E-value=0.56 Score=40.76 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=56.0
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
.++..||.+......+..|..+|.+|..+ .|..+..++.||.+....|+.-+|+-+|-+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 46778999999999999999999999988 577778999999999999999999999999875
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.54 E-value=5.9 Score=31.95 Aligned_cols=103 Identities=8% Similarity=-0.059 Sum_probs=58.4
Q ss_pred hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhcccCCC
Q 016114 103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~ 181 (395)
.++.-+..+.+.|++..|-++..-.++.+.+.. .+........+..++.....-+ .=.++.+++++...+.. .
T Consensus 55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g---~ 128 (312)
T 2wpv_A 55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFS---E 128 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTS---S
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcC---C
Confidence 333444555566667777666666666655532 1112223444555544432111 22567778888776642 1
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLE 211 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (395)
....-...+..+|..|...|++.+|..+|-
T Consensus 129 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 129 YKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 111223456778999999999998888774
No 260
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.78 E-value=9.8 Score=32.01 Aligned_cols=136 Identities=7% Similarity=0.003 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC---------CChhHHHH
Q 016114 75 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE---------NDGRVGMA 145 (395)
Q Consensus 75 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~ 145 (395)
.+.-.++|...+.-+.... +.-..+. .+..+.....+.++|.+++++........... .......+
T Consensus 55 ~~~~~~ly~~fi~~f~~ki--n~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i 129 (393)
T 4b4t_O 55 TPLRLRLYDNFVSKFYDKI--NQLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLI 129 (393)
T ss_dssp CCCCHHHHHHHHHHHHHHS--CSHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHH
T ss_pred chHHHHHHHHHHHHHHHhc--CHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHH
Confidence 3344566666665554332 1111111 23445566778999999988765443332211 11224556
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
...++..|...|+.++|..+++++-...... .+.++......+...+..+...+++..+....-..+...
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~--~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKK--DSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS--CCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 6788999999999999999999998887764 344555666677777888888899887766655555443
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.59 E-value=8.5 Score=31.04 Aligned_cols=182 Identities=8% Similarity=-0.063 Sum_probs=111.6
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114 27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 106 (395)
Q Consensus 27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 106 (395)
-...|+|=+|.+.++.......+. .......+.++.-+..+...|++..|.++..-.++.+.+... +........
T Consensus 23 ~I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~r 97 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVAR 97 (312)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHH
T ss_pred HhhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 345678888888877766655442 345566777777788888888888888887777777766432 222334445
Q ss_pred HHHHHHHcCChH-HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHHH
Q 016114 107 LGSLFIKEGKAV-DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA------------LRVI 173 (395)
Q Consensus 107 l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------~~~~ 173 (395)
+..++.....-+ .=.++..+++....+.. .........+..+|..|...|++.+|..+|-.. .+..
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 555554433222 23567777887766542 222223456788999999999999999877321 1122
Q ss_pred HhcccCCCCchHHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHH
Q 016114 174 KDSNYMSLDDSIMENMRIDL-AELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
... .. ..+.....+... ...|...|+...|...+....+..
T Consensus 177 ~~~--~~-~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 177 CQV--DD-IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHT--TC-CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred Hhc--CC-CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 210 00 122222322223 335667899999999888766554
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.27 E-value=7.1 Score=30.53 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=75.5
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 016114 239 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC 318 (395)
Q Consensus 239 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 318 (395)
..+.|+.++|+......++ .+|........|..++.-.|+++.|.+-++.+.++. +.....+..|..
T Consensus 7 ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-----p~~~~~a~~yr~ 73 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-----PEYLPGASQLRH 73 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----GGGHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhhHHHHHHHH
Confidence 4577899999998888776 568888888899999999999999999888777653 222222222222
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114 319 LVSIQTRLGEDDTKLLELLKRVLR--IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 387 (395)
Q Consensus 319 l~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 387 (395)
+-.+-. .=++.+. .....++. .+. ......-+......|+.++|..+-.++.+..+
T Consensus 74 lI~aE~-----------~R~~vfaG~~~P~~~g~-~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 74 LVKAAQ-----------ARKDFAQGAATAKVLGE-NEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp HHHHHH-----------HHHHHTTSCCCEECCCS-CHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHH-----------HHHHHHcCCCCCCCCCC-CHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 211111 0011110 00111222 222 33333345566677999999999888877643
No 263
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.83 E-value=15 Score=30.93 Aligned_cols=131 Identities=13% Similarity=-0.064 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCC---------CCcchHHHHH
Q 016114 205 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP---------DDQSISFPML 275 (395)
Q Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~~ 275 (395)
.-.++|+..+.-+.... +.-..+. .+..+.....+.++|.+++++........... .......+..
T Consensus 57 ~~~~ly~~fi~~f~~ki--n~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~ 131 (393)
T 4b4t_O 57 LRLRLYDNFVSKFYDKI--NQLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDS 131 (393)
T ss_dssp CCHHHHHHHHHHHHHHS--CSHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHH
Confidence 33456666665554333 1111111 12344556678899999988765433332211 1123455667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 016114 276 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 341 (395)
Q Consensus 276 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al 341 (395)
.++..|...|+.++|..+++++-.......+.+.......+...+..+...+++. .+....-..+
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a-~~y~~~l~~l 196 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFN-SFYYTSLLYL 196 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH
Confidence 8899999999999999999999888776544443344555556677777777766 4444333333
No 264
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=85.46 E-value=11 Score=29.28 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHhhh--CCCChhHHH
Q 016114 163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR----------GQEGRELLEECLLITEKYK--GKEHPSFVT 230 (395)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~ 230 (395)
...+..++.+..+...+....+.....+-..|..|...-. .+.|...|+.|.++..... .+.+|....
T Consensus 118 ~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLG 197 (268)
T 3efz_A 118 LLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLA 197 (268)
T ss_dssp HHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 3455556666554321222222222233344666654322 3678899999999998777 788888777
Q ss_pred HHHHHHHHHH-hhhcHHHHHHHHHHHHHH
Q 016114 231 HLLNLAASYS-RSKNFVEAERLLRICLDI 258 (395)
Q Consensus 231 ~~~~la~~~~-~~~~~~~A~~~~~~a~~~ 258 (395)
...|.+..|. -.+++++|..+.++|.+-
T Consensus 198 LaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 198 TILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777766 469999999999998874
No 265
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=84.89 E-value=11 Score=28.74 Aligned_cols=182 Identities=15% Similarity=0.063 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhC-CCC
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYG-END 139 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~-~~~ 139 (395)
+..++.+..+.++|++...+.+++... +......=.+.++.+|-. .|....+...+....+. +...| ...
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~-------~~eLs~EERnLLSvaYKNvig~rR~swRiissieqk-e~~~~~~~~ 82 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEK-------GEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQK-SNEEGSEEK 82 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSTTCCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HhhcCCHHH
Confidence 445678888999999999998887764 122222333344444422 12222233322211111 10001 111
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHHHH-----cCC-----hHHHHH
Q 016114 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL-DDSIMENMRIDLAELLHI-----VGR-----GQEGRE 208 (395)
Q Consensus 140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 208 (395)
.....-+... + -.+=...+...+.+......+.. +.......+-..|..|.. .|+ .+.|..
T Consensus 83 ~~~i~~yr~k--i------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~ 154 (236)
T 3iqu_A 83 GPEVREYREK--V------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARS 154 (236)
T ss_dssp CSHHHHHHHH--H------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHH--H------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 1122111111 0 11223344555555443211111 122222223344555543 233 367889
Q ss_pred HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHH
Q 016114 209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~ 259 (395)
.|+.|.++......+.||.......|.+..|. -.++.++|..+.+++.+-.
T Consensus 155 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 155 AYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999988888899988777777777766 4589999999888887643
No 266
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=84.46 E-value=13 Score=29.01 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCc--ChHHHHHHHHHHHHHHHhhCc----------hhHHHHHHHHHHHHHHHhc--CCCChhhhhhH
Q 016114 39 VYQRVINVLESRYGK--TSILLVTSLLGMAKVLGSIGR----------AKKAVEIYHRVITILELNR--GTESADLVLPL 104 (395)
Q Consensus 39 ~~~~al~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~ 104 (395)
.+...+.+..+.+-+ .++..+-.+-..|..|..... .+.|...|+.|.++..... +|.+|......
T Consensus 120 iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLa 199 (268)
T 3efz_A 120 ESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATI 199 (268)
T ss_dssp HHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Confidence 344455555544322 222333334445666654322 4678899999999998777 77888877777
Q ss_pred HhHHHHHH-HcCChHHHHHHHHHHHHH
Q 016114 105 FSLGSLFI-KEGKAVDAESVFSRILKI 130 (395)
Q Consensus 105 ~~l~~~~~-~~g~~~~A~~~~~~al~~ 130 (395)
.+.+..|+ -.++.++|..+.++|++-
T Consensus 200 LNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 200 LNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777666 579999999999988775
No 267
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=82.66 E-value=5.5 Score=24.87 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES 49 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 49 (395)
-..+..+...+..+...|+|++|+.+.+++......
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 346777788999999999999999999999876544
No 268
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=82.12 E-value=15 Score=28.24 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHH
Q 016114 203 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~ 260 (395)
.+.|...|+.|.++......+.||.......|.+..|.. .++.++|..+.+++++-..
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai 205 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI 205 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 367889999999999888888999887777777777665 6999999999888877543
No 269
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=78.86 E-value=19 Score=27.28 Aligned_cols=181 Identities=7% Similarity=-0.044 Sum_probs=100.5
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114 106 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDS 184 (395)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 184 (395)
.++.+....++|++...+..++...+... +++ ....-.+.++.+|-. .|....+.+.+... ++. ...+..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~~e--Lt~EERnLLSvAYKNvig~rR~swRiissi----Eqk--ek~~~~ 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE-NSE--FDDEERHLLTLCIKHKISDYRTMTSQVLQE----QTK--QLNNDE 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--SCSCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc-CCC--CCHHHHHHHHHHHHHhhcccHHHHHHHHHH----HHH--HcCCHH
Confidence 56888889999999999999988732111 111 111222333333321 11122222222221 111 001111
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-----hhhcHHHHHHHHHHHHHHH
Q 016114 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----RSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~a~~~~ 259 (395)
. ..+..-|... --.+=...+...+.+..+..-+.....+..+-..|..|. ..|+.+.|...|+.|.++.
T Consensus 82 ~-----~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA 155 (227)
T 2o8p_A 82 L-----VKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL 155 (227)
T ss_dssp H-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 1 1122222111 112233455666666665543332222333334455544 3456789999999999999
Q ss_pred HHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 016114 260 TKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 260 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 301 (395)
...+.+.||-......+.+..|.. .+++++|..+.++|+.+.
T Consensus 156 ~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 156 CEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 887888889777777777766654 799999999999998764
No 270
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=78.24 E-value=22 Score=27.67 Aligned_cols=184 Identities=14% Similarity=0.030 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114 62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG 140 (395)
Q Consensus 62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 140 (395)
+..++.+..+.++|++...+.+++... +........-.+.++.+|-. .|....+...+...- ++.-+..+.
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~-----~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie---qke~~k~~~ 82 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNS-----LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE---QKEESRGNE 82 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT-----CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH---HHhhccCcH
Confidence 446678888899999999999987764 10011222223333443321 122222222222211 111011111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCc-hHHHHHHHHHHHHHHHcCC----------hHHHHHH
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGR----------GQEGREL 209 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~----------~~~A~~~ 209 (395)
.. ..+..-|.. .=-.+=...+...+.+..+...+.... ......+-..|..|...-. .+.|...
T Consensus 83 ~~----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~a 157 (260)
T 1o9d_A 83 EH----VNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTA 157 (260)
T ss_dssp HH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHH
Confidence 11 111111111 111222344555555544431111111 2222223334555443221 3578889
Q ss_pred HHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHH
Q 016114 210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDI 258 (395)
Q Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~ 258 (395)
|+.|..+......+.||.......+.+..|.. .++.++|..+.+++++-
T Consensus 158 Y~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 158 YKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999888888899887777777777665 69999999888887763
No 271
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=77.69 E-value=10 Score=32.53 Aligned_cols=100 Identities=8% Similarity=0.022 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHHHHhcccCC--C----CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh---hhCCCChhH
Q 016114 158 NAEEAVELYKKALRVIKDSNYMS--L----DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK---YKGKEHPSF 228 (395)
Q Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~ 228 (395)
..+++...+.++...+....... . .........+.+-.+|.+.|+..-+...++.. +.... ...-.....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccce
Confidence 45666777777776653221111 1 11223334466778999999999998888543 32211 000012356
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
+...+.+|.++..+++|.+|.+.+..|+..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 777889999999999999999999999986
No 272
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.78 E-value=11 Score=23.15 Aligned_cols=29 Identities=41% Similarity=0.478 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
...|.-.-..|++++|+.+|.++++.+..
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33455567899999999999999997654
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=75.10 E-value=12 Score=23.20 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
.+...|.-.-..|++++|+.+|..+++.+...
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34455566678999999999999999987544
No 274
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=74.52 E-value=27 Score=26.74 Aligned_cols=58 Identities=17% Similarity=0.079 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHH
Q 016114 204 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTK 261 (395)
Q Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~ 261 (395)
+.|...|++|.++......+.||.......+.+..|.. .++.++|..+.+++++-...
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 57888999999999888888899887777777777665 79999999998888774433
No 275
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=74.32 E-value=7.5 Score=23.60 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114 191 IDLAELLHIVGRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (395)
..+|+-|...|+|+.|+.+|+.+++...+..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l 46 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYL 46 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998776554
No 276
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=73.78 E-value=36 Score=27.91 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=51.8
Q ss_pred hhhHHhHHHHHHHcC--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 101 VLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
+.++.+||.+-...- .-..++.+|.+++...+..+++.+.. -+..+|..+++.+++.+|+..+..+-...+.-
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvY---PYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIY---PYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCcc---chhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 344445554433221 12238899999999998887665542 36678889999999999999999988876654
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.19 E-value=31 Score=26.99 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=45.2
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 68 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 68 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
.....|..++|+......++ ..|..+.....+..++.-.|+++.|...++.+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45678899999988887776 36777778888889999999999999988877665
No 278
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=73.10 E-value=5.4 Score=24.20 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114 358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 392 (395)
Q Consensus 358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 392 (395)
-...+|+=|...|+|+.|+.+|+.+++.-.++-.+
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999877666443
No 279
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=72.05 E-value=31 Score=26.39 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 016114 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 303 (395)
.+.|...|+.|.++....+.+.||.......+.+..|.. .++.++|..+.+++++-...
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 357888999999999888889999877777777777665 79999999998888775544
No 280
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.47 E-value=15 Score=22.60 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 148 SLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 148 ~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
..|.-.-..|++++|+.+|.++++.+..
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3445557889999999999999997654
No 281
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=70.69 E-value=35 Score=26.50 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 016114 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 303 (395)
.+.|...|+.|.++....+.+.||-......+.+..|.. .++.++|..+.++|++-...
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~ 231 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 231 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 367889999999998888889999877777777777666 79999999998888775543
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.48 E-value=41 Score=32.32 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=50.7
Q ss_pred hhHHhHHHHHHHcCChHHHHHHHHHHHHHH-------------HHHhC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 016114 102 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVYG--ENDGRVGMAMCSLAHAKCANGNAEEAVELY 166 (395)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 166 (395)
..-+.+|.++...|++++|..+|++|-.-. ..... +........|..+..++...+-++-++.+.
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345789999999999999999999864210 00000 111123346778888888899999999999
Q ss_pred HHHHHHH
Q 016114 167 KKALRVI 173 (395)
Q Consensus 167 ~~a~~~~ 173 (395)
+.|++..
T Consensus 921 ~lAI~~~ 927 (950)
T 4gq2_M 921 LLADASK 927 (950)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 8888753
No 283
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=69.92 E-value=18 Score=22.85 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
+...|.-.-..|++++|+.+|..+++.+...
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3445555678899999999999999987654
No 284
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=69.28 E-value=36 Score=26.04 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 016114 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 303 (395)
.+.|...|+.|.++....+.+.||-......+.+..|.. .+++++|..+.++|++-...
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~ 208 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMA 208 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999888889999877777777777664 79999999998888765443
No 285
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=69.22 E-value=37 Score=26.18 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 016114 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI 303 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 303 (395)
.+.|...|+.|.++....+.+.||-......+.+..|.. .++.++|..+.++|++-...
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 367888999999999888889999877777777776665 79999999998888775543
No 286
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=67.55 E-value=55 Score=27.49 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114 119 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178 (395)
Q Consensus 119 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 178 (395)
.++.+|.+++...+..+++.|.. -|..+|-.+++.+++.+|+..+-.+-...+.-++
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvY---PYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY 353 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIY---PYMYLAGYHCRNRNVREALQAWADTATVIQDYNY 353 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHHHHhccCCcc---ceeecchhhhhcchHHHHHHHHHHHHHHHHHcCC
Confidence 38899999999998887655542 4667888999999999999999999887765433
No 287
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=67.25 E-value=21 Score=30.63 Aligned_cols=100 Identities=10% Similarity=0.150 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHHHHHHhcC----cC----hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH---hcCCCChhh
Q 016114 32 NYEKSMLVYQRVINVLESRYG----KT----SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL---NRGTESADL 100 (395)
Q Consensus 32 ~~~~A~~~~~~al~~~~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~ 100 (395)
..+++.....++...+..... .. ..........+-.+|++.|+..-+...++..-.. .. ...-.....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccce
Confidence 445556666666555322111 11 1122333455668899999999999888654332 10 000012245
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHH-HH
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKI-YT 132 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~ 132 (395)
+...+.+|.++...++|.+|.+.+..|+.. +.
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 667889999999999999999999999988 64
No 288
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=66.70 E-value=40 Score=25.58 Aligned_cols=181 Identities=9% Similarity=-0.037 Sum_probs=98.1
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc-CChHHHHHHHHHHHHHHHHHhCCCChhH
Q 016114 64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRV 142 (395)
Q Consensus 64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 142 (395)
.++.+..+.++|++...+..++...+.... ......-.+.++.+|-.. |....+...... .+... ..+..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~---~eLt~EERnLLSvAYKNvig~rR~swRiiss----iEqke-k~~~~- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFEN---SEFDDEERHLLTLCIKHKISDYRTMTSQVLQ----EQTKQ-LNNDE- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHS-CSCHH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccC---CCCCHHHHHHHHHHHHHhhcccHHHHHHHHH----HHHHH-cCCHH-
Confidence 567888889999999999998887321111 112222233344443211 112222222211 11110 11111
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHH
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI-----VGRGQEGRELLEECLLIT 217 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~ 217 (395)
...+..-|... =-.+=...+...+.+..+. .-|........+-..|..|.. .|+.+.|...|+.|.++.
T Consensus 82 ---~~~~i~~yr~k-ie~EL~~iC~dil~lld~~--Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA 155 (227)
T 2o8p_A 82 ---LVKICSEYVFS-LRKDIKAFLQSFEDCVDRL--VEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL 155 (227)
T ss_dssp ---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTC--CCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHh--ccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 11111112111 1123344566677776654 223222222233344555443 466889999999999999
Q ss_pred HhhhCCCChhHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHH
Q 016114 218 EKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIM 259 (395)
Q Consensus 218 ~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~ 259 (395)
.....+.||.......|.+..| .-.++.++|..+.++++++.
T Consensus 156 ~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 156 CEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 8777777886666556665554 46789999999999998754
No 289
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.32 E-value=19 Score=22.17 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLES 49 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 49 (395)
+..+...|.-.-..|++++|+.+|.++++.+..
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344556666777888888888888888877644
No 290
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=65.14 E-value=47 Score=25.87 Aligned_cols=184 Identities=11% Similarity=-0.021 Sum_probs=96.3
Q ss_pred hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114 103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSL 181 (395)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 181 (395)
-+..++.+....++|++...+..++... +........-.+.++..|-. .|..-.+.+.+....+-.. ..+
T Consensus 10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~-----~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~----~k~ 80 (260)
T 1o9d_A 10 ENVYMAKLAEQAERYEEMVEFMEKVSNS-----LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE----SRG 80 (260)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-----CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh----ccC
Confidence 3456788888899999999999988764 10011111222233333321 1222223333322111110 001
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC--CCh-hHHHHHHHHHHHHHhhh----------cHHHH
Q 016114 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK--EHP-SFVTHLLNLAASYSRSK----------NFVEA 248 (395)
Q Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~~----------~~~~A 248 (395)
+... ..+..-|.. .--.+=...+...+.+.....-+ ..+ ..+..+...|..|.-.- -.+.|
T Consensus 81 ~~~~-----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 154 (260)
T 1o9d_A 81 NEEH-----VNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 154 (260)
T ss_dssp CHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cHHH-----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 1111 111111211 11122234445555555443211 122 22223334455554322 23578
Q ss_pred HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 016114 249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 301 (395)
...|+.|.++....+.+.||.......+.+..|.. .++.++|..+.+++++-.
T Consensus 155 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 155 LTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 88999999999888889999877777777777665 799999998888877644
No 291
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.63 E-value=1e+02 Score=29.53 Aligned_cols=174 Identities=17% Similarity=0.191 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc--ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 92 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 92 (395)
..+-+++.+|.++...++ ++..++...+.-....-+. .......+...+|.++.-.++ +++...+...+.-
T Consensus 411 ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d---- 483 (963)
T 4ady_A 411 IKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN---- 483 (963)
T ss_dssp HHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc----
Confidence 457778889988877764 5676666655432100000 112333456677777776665 3555555554431
Q ss_pred cCCCChhh-hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114 93 RGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171 (395)
Q Consensus 93 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 171 (395)
++... ..+-..+|.++...|+-+-...++..+.+ ..+..+ .-...+|......|+.+.+....+....
T Consensus 484 ---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~v-rR~aalgLGll~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 484 ---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNI-TRGLAVGLALINYGRQELADDLITKMLA 552 (963)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHH-HHHHHHHHHHHTTTCGGGGHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHH-HHHHHHHHHhhhCCChHHHHHHHHHHHh
Confidence 22221 24556788888888886655555554442 122222 2223445555567777766665554332
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016114 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 214 (395)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (395)
..++......-..+|..|...|+...-..++..+.
T Consensus 553 --------~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 553 --------SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp --------CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 12333333344667888899999655444666554
No 292
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=64.32 E-value=29 Score=23.11 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=21.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 150 AHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 150 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
|.-.-..|+|++|+.+|..+++.+...
T Consensus 25 Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 334456799999999999999987553
No 293
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=63.55 E-value=23 Score=21.80 Aligned_cols=29 Identities=21% Similarity=0.055 Sum_probs=22.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKD 175 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 175 (395)
...|.-.-..|++++|+.+|..+++.+..
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34444556789999999999999997654
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.49 E-value=38 Score=24.19 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhh-hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC
Q 016114 207 RELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 285 (395)
Q Consensus 207 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 285 (395)
..++++++..+... .-.+++....++...+... ++ +.++|..... +- -....+..|...|..+...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~---~~---IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHN---QG---IGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHH---TT---SSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHH---CC---cchhhHHHHHHHHHHHHHcC
Confidence 44566666654321 1125677777777776653 33 4555554433 11 23356677888999999999
Q ss_pred ChHHHHHHHHHHHHH
Q 016114 286 RDKEAEKLVLEALYI 300 (395)
Q Consensus 286 ~~~~A~~~~~~al~~ 300 (395)
++.+|.+.|+.+++.
T Consensus 111 ~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999873
No 295
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.43 E-value=24 Score=21.66 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114 17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLES 49 (395)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 49 (395)
+.-+...|.-.-..|++++|+.+|.++++.+..
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344556666677788888888888888876544
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=60.62 E-value=28 Score=21.80 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (395)
...+..+...+..+...|+|++|+++.+++........
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAm 49 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM 49 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 34456667789999999999999999999987766554
No 297
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.80 E-value=23 Score=21.12 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 275 LHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 275 ~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
..+|..+...|++++|..+|-+|+..+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 467888888999999988888887754
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.69 E-value=51 Score=24.47 Aligned_cols=86 Identities=6% Similarity=0.015 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhc-CcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC
Q 016114 38 LVYQRVINVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 116 (395)
Q Consensus 38 ~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (395)
.++++++..+.... -.+++..+..+...+..+ ..+...++..+|.-.... - -....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~---IG~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---G---IGTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---T---SSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---C---CcHHHHHHHHHHHHHHHHcCC
Confidence 57777777664431 245678888888887765 334456777777765443 1 134556678888999999999
Q ss_pred hHHHHHHHHHHHHH
Q 016114 117 AVDAESVFSRILKI 130 (395)
Q Consensus 117 ~~~A~~~~~~al~~ 130 (395)
+.+|...|+.+++.
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999875
No 299
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=58.75 E-value=76 Score=26.13 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114 188 NMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 188 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 260 (395)
.++.+||.+-...- .-..++.+|.+++...+..++..|. ..+..+|..+.+.+++.+|+..+-++-+...
T Consensus 256 mALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 256 MAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 34456666544322 2234899999999999988865553 3466788899999999999999988877544
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=58.14 E-value=7.5 Score=24.63 Aligned_cols=33 Identities=12% Similarity=-0.101 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114 359 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 391 (395)
Q Consensus 359 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 391 (395)
-..+|..+...|+++.|..+|-+|+.++++-.+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 346788888899999999988888888765443
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.87 E-value=1.5e+02 Score=28.59 Aligned_cols=72 Identities=6% Similarity=-0.148 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-------------HHHcC--CCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIR-------------EIAFG--KDSLPVGEALDCLVSIQTRLGEDDTKLLE 335 (395)
Q Consensus 271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 335 (395)
...-+.+|.++...|++++|..+|++|-... ...+. +........|..+..++...+-++ -++.
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~-~vi~ 918 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI-DALE 918 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHH-HHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHH-HHHH
Confidence 3445789999999999999999999864211 00000 001112234556777777777777 7777
Q ss_pred HHHHHHHH
Q 016114 336 LLKRVLRI 343 (395)
Q Consensus 336 ~~~~al~~ 343 (395)
+.+.|++.
T Consensus 919 fA~lAI~~ 926 (950)
T 4gq2_M 919 FSLLADAS 926 (950)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77777764
No 302
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=55.37 E-value=1.2e+02 Score=27.40 Aligned_cols=249 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 90 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 90 (395)
++.|....+-..--..+...+++..-+.++ +..|......+.........|+-.+|.....++...
T Consensus 66 ~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~------------~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~-- 131 (618)
T 1qsa_A 66 PTLPPARTLQSRFVNELARREDWRGLLAFS------------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-- 131 (618)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHC------------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC--
T ss_pred CCChhHHHHHHHHHHHHHhCCCHHHHHHhc------------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC--
Q ss_pred HhcCCCChhhhhhHHh---------------HHHHHHHcCChHHHHHHHHHH------------------HHHHHHHhCC
Q 016114 91 LNRGTESADLVLPLFS---------------LGSLFIKEGKAVDAESVFSRI------------------LKIYTKVYGE 137 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~---------------l~~~~~~~g~~~~A~~~~~~a------------------l~~~~~~~~~ 137 (395)
+...|..+..+.. ........|+...|..+.... -.........
T Consensus 132 ---~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~ 208 (618)
T 1qsa_A 132 ---GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTT 208 (618)
T ss_dssp ---SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHS
T ss_pred ---CCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhcc
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 217 (395)
Q Consensus 138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (395)
...........++.......+.+.|...+...... ...+..........++.-....+...++..++.+...
T Consensus 209 ~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-- 280 (618)
T 1qsa_A 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQA------QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-- 280 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--
T ss_pred CCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhc------cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114 218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 297 (395)
Q Consensus 218 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 297 (395)
....... ....+...+..|+++.|..++...-. .........+-+|..+...|+.++|..+|+++
T Consensus 281 ------~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 281 ------RSQSTSL-IERRVRMALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp ------TCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------cCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred HH
Q 016114 298 LY 299 (395)
Q Consensus 298 l~ 299 (395)
..
T Consensus 346 a~ 347 (618)
T 1qsa_A 346 MQ 347 (618)
T ss_dssp HT
T ss_pred hc
No 303
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=55.31 E-value=46 Score=24.79 Aligned_cols=60 Identities=7% Similarity=-0.081 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhH
Q 016114 15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 77 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 77 (395)
..+.-.+.+|.++...++|.+|...+.+|+..+.+. .......++..+--+-.-.|+...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456667899999999999999999999999875321 223334444444444455676553
No 304
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=55.27 E-value=94 Score=26.17 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114 119 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178 (395)
Q Consensus 119 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 178 (395)
.+..+|.+|+...+..+...+. .-|..+|-.+.+.+++.+|+..+..+-.....-++
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY 338 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY 338 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhhccc
Confidence 4678999999999988765553 34677899999999999999999999887765443
No 305
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=54.96 E-value=24 Score=30.27 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Q 016114 332 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 371 (395)
Q Consensus 332 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 371 (395)
+|++.|++|++..+++...+++.....+..++..|...|+
T Consensus 450 kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 450 GAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 7788888888888887777777777777777666655554
No 306
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=54.73 E-value=37 Score=21.55 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114 275 LHLGITLYHLNRDKEAEKLVLEALYIR 301 (395)
Q Consensus 275 ~~la~~~~~~g~~~~A~~~~~~al~~~ 301 (395)
..+|..+...|+++.|..+|-+|+..+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 467888999999999999998888876
No 307
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=54.29 E-value=51 Score=22.83 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114 239 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299 (395)
Q Consensus 239 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 299 (395)
...+|+-++-.+.+...+. +.+..+..+..+|..|.+.|+..+|.+++.+|-+
T Consensus 101 lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3456666655554443222 3444567788999999999999999999998865
No 308
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=54.20 E-value=75 Score=24.73 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHH
Q 016114 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIRE 302 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 302 (395)
.+.|...|+.|.++. ..+.+.||-......+.+..|.. .++.++|..+.+++++-..
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 357888999999998 77888898777777777777665 7999999999888876543
No 309
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=52.85 E-value=55 Score=22.70 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=36.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 196 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
....+|+-++-.+.+...+. +.+..+..+..+|..|.+.|+..+|.+++.+|.+
T Consensus 100 ~lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34456666655554443221 2333456778899999999999999999999876
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.98 E-value=62 Score=23.09 Aligned_cols=82 Identities=10% Similarity=0.161 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHh-cCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC
Q 016114 37 MLVYQRVINVLESR-YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG 115 (395)
Q Consensus 37 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 115 (395)
..++++++..+... .-.+++..+..+...+... +++..+|...... .-....+..|...|..+...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~------~IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ------GIGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT------TSSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CcchhhHHHHHHHHHHHHHcC
Confidence 45666766654332 1234567788887777653 3355556554331 123455667888899999999
Q ss_pred ChHHHHHHHHHHHHH
Q 016114 116 KAVDAESVFSRILKI 130 (395)
Q Consensus 116 ~~~~A~~~~~~al~~ 130 (395)
++.+|...|..+++.
T Consensus 111 ~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999875
No 311
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=50.70 E-value=55 Score=22.76 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 016114 273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE 314 (395)
Q Consensus 273 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 314 (395)
.+...|.+|...||.+.|.-+|-+.+.+...+ +.||+...
T Consensus 44 ~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 44 KIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhh
Confidence 44566889999999999999999999988655 78887643
No 312
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=50.17 E-value=43 Score=20.74 Aligned_cols=32 Identities=13% Similarity=-0.059 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114 190 RIDLAELLHIVGRGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (395)
+...|.-.-..|++++|+.+|..+++.+....
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34556666788999999999999998876554
No 313
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=49.88 E-value=1.2e+02 Score=25.65 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114 205 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 260 (395)
.++.+|.+++...+..++..|. ..+..+|..+.+.+++.+|+..+-.+-+...
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 4889999999999888865553 3466788899999999999999988876543
No 314
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=49.71 E-value=35 Score=29.29 Aligned_cols=42 Identities=12% Similarity=-0.100 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCc
Q 016114 288 KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 329 (395)
Q Consensus 288 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 329 (395)
++|+++|++|+...+++...+.+.....+..++..|...|++
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 478888888888888887778888777777777776666653
No 315
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=49.33 E-value=99 Score=24.69 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhCc---hhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChH--HHHHHHHHHHHHHHHH
Q 016114 60 TSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--DAESVFSRILKIYTKV 134 (395)
Q Consensus 60 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~ 134 (395)
..+..-|.+.-..|- -+-|-++|.+|+.++++... ++.....+...+...+.....+. .-..+-.++-....+.
T Consensus 100 rL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~Is-dSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askL 178 (298)
T 2r17_C 100 RLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEIS-DSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 178 (298)
T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhc
Confidence 333333444444444 56678889999999888542 33444555555555555655542 2222223332222333
Q ss_pred hCCCChhHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH---HHHHHHHHHHcC
Q 016114 135 YGENDGRVGMAMCSLAHAKCA----------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM---RIDLAELLHIVG 201 (395)
Q Consensus 135 ~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~la~~~~~~g 201 (395)
+ ..|+...+...-+.+++. ..+-+..++++++++++.... -++...... ..+.-..|+..|
T Consensus 179 L--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~----~d~~~~v~LfveILn~ylyff~~g 252 (298)
T 2r17_C 179 L--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQC----MDPSLQVQLFIEILNRYIYFYEKE 252 (298)
T ss_dssp S--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHS----CCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred c--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHH----hChhhHHHHHHHHHHHHHhhhhCC
Confidence 2 346667777777777764 257889999999999998764 122211111 134445566677
Q ss_pred ChHHHHHHHHHHHHHHHhhh
Q 016114 202 RGQEGRELLEECLLITEKYK 221 (395)
Q Consensus 202 ~~~~A~~~~~~al~~~~~~~ 221 (395)
+..-..++.+..+++.....
T Consensus 253 ~~~Vt~~~in~LI~lI~~~l 272 (298)
T 2r17_C 253 NDAVTIQVLNQLIQKIREDL 272 (298)
T ss_dssp CTTSCHHHHHHHHHHHHTTT
T ss_pred CCcccHHHHHHHHHHHHHHh
Confidence 76666667777777665533
No 316
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.40 E-value=87 Score=23.72 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhc-CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHC
Q 016114 78 AVEIYHRVITILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN 156 (395)
Q Consensus 78 A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 156 (395)
-..++++++..+.... -.+++....++...+.. .+++..+|...... -. ....+..|...|..+...
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~---~I---G~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHH---HI---GQESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHT---TC---STTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHC---Cc---chhHHHHHHHHHHHHHHc
Confidence 4567777776654321 13556666666666552 24566666654432 11 233556788889999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 016114 157 GNAEEAVELYKKALRV 172 (395)
Q Consensus 157 g~~~~A~~~~~~a~~~ 172 (395)
|++.+|..+|+.+++.
T Consensus 164 g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 164 GLFQKADEVYQKGKRM 179 (223)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999884
No 317
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=47.85 E-value=1.3e+02 Score=25.46 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114 188 NMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 188 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 260 (395)
.++.+||.+-...- ....++.+|++|+...+..+...+ ...+..+|-.+.+.+++.+|...+-++-....
T Consensus 263 mALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~ 334 (489)
T 4gq4_A 263 MALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 334 (489)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhh
Confidence 34456666554322 223578899999999998886555 34566789999999999999999988876543
No 318
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=47.71 E-value=84 Score=23.36 Aligned_cols=59 Identities=10% Similarity=0.005 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH
Q 016114 141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 204 (395)
Q Consensus 141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 204 (395)
+.+...+.+|.++...++|.+|.+.+..|+..+.+ ........++..+.-+-...|+..
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~-----~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR-----SSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH-----hHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45667889999999999999999999999987532 122233334444544555567754
No 319
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=47.49 E-value=98 Score=24.11 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHH
Q 016114 204 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~ 260 (395)
+.|...|++|.++. ....+.||.......|.+..|.. .++.++|..+.+++.+-..
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 57888999999999 77888899877777777777665 7999999999998887443
No 320
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=46.29 E-value=1e+02 Score=23.98 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHH
Q 016114 204 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMT 260 (395)
Q Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~ 260 (395)
+.|...|++|.++......+.+|.......|.+..|.. .++.++|..+.+++.+-..
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 67889999999999888888999887777777777665 6999999999888877543
No 321
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=45.57 E-value=64 Score=21.42 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=21.5
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114 320 VSIQTRLGEDDTKLLELLKRVLRIQEREF 348 (395)
Q Consensus 320 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 348 (395)
|.-.-..|+++ +|+.+|..+++.+...+
T Consensus 25 Ave~D~ag~y~-eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 25 AAQEDKAGNYE-EALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHTCHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHH-HHHHHHHHHHHHHHHHH
Confidence 33445668888 99999999999877654
No 322
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=45.16 E-value=39 Score=29.08 Aligned_cols=34 Identities=15% Similarity=-0.082 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
......+...+|++|+..|++++|....++++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3445567788999999999999999999999874
No 323
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=45.13 E-value=53 Score=20.34 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 16 LDAILLHMGSMYSTLENYEKSMLVYQRVINV 46 (395)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 46 (395)
.+..+..-|.-++..++|.+|..+|+++...
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4566677788899999999999999998865
No 324
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.97 E-value=2.2e+02 Score=27.38 Aligned_cols=175 Identities=14% Similarity=0.225 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC--CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114 56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133 (395)
Q Consensus 56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 133 (395)
....-++..+|.++...++ ++..++...+.-.....+. .......+...||.++...++ +++.+.+...+.-
T Consensus 410 ~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d--- 483 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN--- 483 (963)
T ss_dssp HHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc---
Confidence 3466678888888766664 5776666655431100000 011223455678887777766 4555555555431
Q ss_pred HhCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114 134 VYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212 (395)
Q Consensus 134 ~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (395)
++... ..+-..+|.++...|+-+-....+..+.+ . .+... .+. ..+|..+...|+.+.+..+.+.
T Consensus 484 ----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~----~~e~v-rR~-aalgLGll~~g~~e~~~~li~~ 549 (963)
T 4ady_A 484 ----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T----QHGNI-TRG-LAVGLALINYGRQELADDLITK 549 (963)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C----SCHHH-HHH-HHHHHHHHTTTCGGGGHHHHHH
T ss_pred ----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c----CcHHH-HHH-HHHHHHhhhCCChHHHHHHHHH
Confidence 22222 24556788888899987665555554443 1 12222 222 3445555567887777666554
Q ss_pred HHHHHHhhhCCCChhH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 213 CLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 213 al~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
.... .+|.. ..+...+|..|...|+...-..++..+..
T Consensus 550 L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 550 MLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 3321 23332 23345678888899996555556665554
No 325
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=44.66 E-value=94 Score=23.08 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhh-CCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC
Q 016114 208 ELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 286 (395)
Q Consensus 208 ~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 286 (395)
.++++++..+.... -.+++.....|...+..+ ..++..++.++|.-... +-. ....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~---~~I---G~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFN---KGI---GTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH---HTS---STTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH---CCC---cHHHHHHHHHHHHHHHHcCC
Confidence 56777777654321 135677788887777765 23445677777776544 122 23456778889999999999
Q ss_pred hHHHHHHHHHHHHH
Q 016114 287 DKEAEKLVLEALYI 300 (395)
Q Consensus 287 ~~~A~~~~~~al~~ 300 (395)
+.+|.+.|+..++.
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999873
No 326
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=43.98 E-value=33 Score=23.95 Aligned_cols=40 Identities=5% Similarity=-0.095 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 016114 272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 312 (395)
Q Consensus 272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 312 (395)
..+...|.+|...|+.+.|.-+|-+...+..... +.||+.
T Consensus 41 ~~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpdy 80 (146)
T 2xze_A 41 VEIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCccc
Confidence 3445678899999999999999999988886443 445553
No 327
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=43.58 E-value=43 Score=28.85 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=28.9
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
......++..+|++|+..|++++|....++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455667788999999999999999999999874
No 328
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.34 E-value=58 Score=23.15 Aligned_cols=68 Identities=6% Similarity=-0.025 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc-ChHHHHHHHHH---HHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114 21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLG---MAKVLGSIGRAKKAVEIYHRVITILEL 91 (395)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~al~~~~~ 91 (395)
+.-|..++..|+|-+|-+.++..-... .++ +.......+.. .|......|+..-|...+.+++.....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~---~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~ 107 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNY---GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTT---CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 445666777799999988888765432 111 02334444444 345566789999999999999987654
No 329
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=41.30 E-value=1.7e+02 Score=24.96 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=26.3
Q ss_pred cHHHH-HHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 13 EPLLD-AILLHMGSMYSTLENYEKSMLVYQRVINV 46 (395)
Q Consensus 13 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 46 (395)
.|+.. ..+..|+..+...|+|.+|-.++..+..+
T Consensus 6 ~pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 6 TPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45544 45589999999999999999888755543
No 330
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=41.12 E-value=46 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
.+....+...+|.+|...|++++|....++++...
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34566788889999999999999999999998754
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.61 E-value=1.2e+02 Score=23.02 Aligned_cols=83 Identities=12% Similarity=0.020 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhh-CCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc
Q 016114 206 GRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 284 (395)
Q Consensus 206 A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 284 (395)
=..++++++..+.... -.+++.....|...+.. . +.+..+|.-... +- -....+..|...|..+...
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---~~p~~if~~L~~---~~---IG~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---DEPVELFSFLAH---HH---IGQESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHH---TT---CSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHH---CC---cchhHHHHHHHHHHHHHHc
Confidence 3567777776654321 12567777777776653 1 345556655433 11 2335567788899999999
Q ss_pred CChHHHHHHHHHHHHH
Q 016114 285 NRDKEAEKLVLEALYI 300 (395)
Q Consensus 285 g~~~~A~~~~~~al~~ 300 (395)
|++.+|...|+..++.
T Consensus 164 g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 164 GLFQKADEVYQKGKRM 179 (223)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999874
No 332
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=39.41 E-value=56 Score=28.15 Aligned_cols=34 Identities=15% Similarity=-0.069 Sum_probs=29.4
Q ss_pred CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300 (395)
Q Consensus 267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 300 (395)
.+....++..+|++|...|++++|....++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4556677888999999999999999999999874
No 333
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=35.58 E-value=1.1e+02 Score=21.24 Aligned_cols=41 Identities=2% Similarity=-0.078 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114 314 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 357 (395)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 357 (395)
..+...|.+|...|+.+ .|.-+|-+.+.++..+ +.||+...
T Consensus 43 ~~L~r~A~~y~~EGd~E-~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 43 LKIFKTAEECRLDRDEE-RAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHH--hcCcchhh
Confidence 44566788999999999 9999999999888654 57787654
No 334
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=35.35 E-value=2.1e+02 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 229 VTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
...+..|+..+...|++.+|.-++..+..
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567899999999999999988875544
No 335
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=34.96 E-value=73 Score=19.00 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114 146 MCSLAHAKCANGNAEEAVELYKKALRVI 173 (395)
Q Consensus 146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 173 (395)
...+|..+...|++++|..+|-+|+..+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 3567888899999999999999998864
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.16 E-value=1.3e+02 Score=21.37 Aligned_cols=69 Identities=10% Similarity=-0.033 Sum_probs=46.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC-CchHHHH--HH-HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL-DDSIMEN--MR-IDLAELLHIVGRGQEGRELLEECLLITEKY 220 (395)
Q Consensus 147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~--~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (395)
..-+..++..|+|-+|-+.++..-... .++ +...... +. ...|......|+...|..++.+++......
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~-----~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNY-----GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTT-----CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 345666777899999999998876532 111 0122223 33 344556677899999999999999877543
No 337
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=33.10 E-value=50 Score=28.60 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
......++..+|++|+..|++++|....++++..
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3445567788999999999999999999998864
No 338
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=32.27 E-value=1.9e+02 Score=23.07 Aligned_cols=153 Identities=13% Similarity=0.037 Sum_probs=79.9
Q ss_pred hHHhHHHHHHHcCC---hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhcc
Q 016114 103 PLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA--EEAVELYKKALRVIKDSN 177 (395)
Q Consensus 103 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~ 177 (395)
.+..-|.+--..|- -+-|-+.|.+|+.+++.... ++.....+...+...+.....+ +.-..+..++.....+.
T Consensus 101 L~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~Is-dSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askL- 178 (298)
T 2r17_C 101 LFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEIS-DSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL- 178 (298)
T ss_dssp HHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhc-
Confidence 33333444444444 55678889999999988643 3333444555555555555443 22222223332222221
Q ss_pred cCCCCchHHHHHHHHHHHHHHH----------cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH---HHHHHHHHhhhc
Q 016114 178 YMSLDDSIMENMRIDLAELLHI----------VGRGQEGRELLEECLLITEKYKGKEHPSFVTHL---LNLAASYSRSKN 244 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~~la~~~~~~~~ 244 (395)
-..+....+...-+.+++. ..+-+..+++++++++++.... +.......+ .+.-..|...|+
T Consensus 179 ---LKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~--d~~~~v~LfveILn~ylyff~~g~ 253 (298)
T 2r17_C 179 ---LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM--DPSLQVQLFIEILNRYIYFYEKEN 253 (298)
T ss_dssp ---SSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ---cCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHhhhhCCC
Confidence 1223334454555555553 1366789999999999987764 212222221 223344556666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016114 245 FVEAERLLRICLDIMTKT 262 (395)
Q Consensus 245 ~~~A~~~~~~a~~~~~~~ 262 (395)
..-..++.+..+++..+.
T Consensus 254 ~~Vt~~~in~LI~lI~~~ 271 (298)
T 2r17_C 254 DAVTIQVLNQLIQKIRED 271 (298)
T ss_dssp TTSCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 544555566666655543
No 339
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=31.01 E-value=93 Score=19.02 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 50 (395)
Q Consensus 14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 50 (395)
...+..+...|.-.-..|++++|+.+|..+++.+...
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445556677777788899999999999999976543
No 340
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=29.92 E-value=92 Score=26.83 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 257 (395)
+....+...+|++|+..+++++|....++++.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44566788899999999999999999998875
No 341
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=29.83 E-value=1e+02 Score=26.52 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLL 215 (395)
Q Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (395)
.....++..+|++|...|++++|....++++.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 33456778899999999999999999998875
No 342
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=29.79 E-value=59 Score=28.15 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172 (395)
Q Consensus 139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 172 (395)
.+....++..+|.+|...|+|++|....++++..
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3446678889999999999999999999999874
No 343
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=29.36 E-value=1.4e+02 Score=20.70 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114 143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176 (395)
Q Consensus 143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 176 (395)
+..+...|.+|...|+.+.|.-.|-+...++-..
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~e~ 73 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEK 73 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3456667899999999999999999998888643
No 344
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=28.96 E-value=2.6e+02 Score=23.43 Aligned_cols=34 Identities=12% Similarity=0.395 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHH
Q 016114 15 LLDAILLHMGSMYSTLE------NYEKSMLVYQRVINVLE 48 (395)
Q Consensus 15 ~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~ 48 (395)
+.+.+++++|.++...+ ....|..+|++|--++.
T Consensus 121 E~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~ 160 (392)
T 1zb1_A 121 EKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFE 160 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 56778888888876544 46788888988877654
No 345
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.50 E-value=1.1e+02 Score=19.22 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=42.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114 149 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 220 (395)
Q Consensus 149 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (395)
-|..++..|+|-+|-+.++..-.... ++. .....-+....|......|+. |...+.+++......
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~-----~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKAT-----GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 45566778999999999998766420 111 112233334445566678888 999999999877654
No 346
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.23 E-value=1.2e+02 Score=18.89 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=31.7
Q ss_pred hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH-HHHHHH
Q 016114 101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM-CSLAHA 152 (395)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~ 152 (395)
+.....-|.-++..++|.+|..+|+++... .++|.+-.++ +.++.|
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec 99 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEEC 99 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHH
Confidence 345555677788999999999999999865 2456554444 444443
No 347
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.88 E-value=1.3e+02 Score=18.91 Aligned_cols=42 Identities=5% Similarity=-0.122 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC-CCCHHHHHHH
Q 016114 317 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-SESEEVMLTL 359 (395)
Q Consensus 317 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~ 359 (395)
...|.-.-..|+++ +|+.+|..+++.+...+. ..++.....+
T Consensus 19 v~~Ave~D~~g~y~-eAl~~Y~~Aie~l~~alk~e~~~~~k~~l 61 (93)
T 1wfd_A 19 LKRAVELDAESRYQ-QALVCYQEGIDMLLQVLKGTKESSKRCVL 61 (93)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444556678898 999999999988776543 2334443333
No 348
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.05 E-value=1.6e+02 Score=25.64 Aligned_cols=33 Identities=12% Similarity=-0.045 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114 226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258 (395)
Q Consensus 226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 258 (395)
.....++..+|++|+..|++++|....++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445567788999999999999999999999863
No 349
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=24.03 E-value=3.4e+02 Score=23.18 Aligned_cols=101 Identities=9% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHH---------------HHHHHHHHHHhhCch
Q 016114 11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT---------------SLLGMAKVLGSIGRA 75 (395)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~~ 75 (395)
..+......+..|+..+...++|.+|--.+....++..-...+-.|.... .+......+...+.|
T Consensus 29 ~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~ 108 (436)
T 2yin_A 29 NREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMW 108 (436)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcH
Q ss_pred hHHHHHHHHHHHHHHHh-cCCCChhhhhhHHhHHHHHHH
Q 016114 76 KKAVEIYHRVITILELN-RGTESADLVLPLFSLGSLFIK 113 (395)
Q Consensus 76 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 113 (395)
+.|+.+++..+..++.. . +-...+.++..++.+|..
T Consensus 109 E~ai~l~k~L~~~yE~~~~--Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 109 EEAISLCKELAEQYEMEIF--DYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
No 350
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.94 E-value=1.8e+02 Score=25.30 Aligned_cols=33 Identities=9% Similarity=-0.113 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.....++..+|++|...|++++|....++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344556778999999999999999999999864
No 351
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.02 E-value=1.6e+02 Score=25.37 Aligned_cols=33 Identities=12% Similarity=-0.154 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLI 216 (395)
Q Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (395)
.....++..+|++|...|++++|....++++..
T Consensus 194 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 194 FNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 334567788999999999999999999999864
No 352
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=21.76 E-value=3.5e+02 Score=22.58 Aligned_cols=31 Identities=19% Similarity=0.015 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114 274 MLHLGITLYHLNRDKEAEKLVLEALYIREIA 304 (395)
Q Consensus 274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 304 (395)
++..|......+++.+|+..++.|.+.....
T Consensus 260 ~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 290 (392)
T 1zb1_A 260 AYYHGLHLEEENRVGEAIAFLDFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 4445666667788889999998888776654
No 353
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=20.43 E-value=2.2e+02 Score=19.57 Aligned_cols=42 Identities=5% Similarity=-0.208 Sum_probs=23.2
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114 31 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 88 (395)
Q Consensus 31 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 88 (395)
|+.+++..++.+|..-.. .+......|.|+.|.-..+++.+.
T Consensus 4 ~~~ee~~~wl~~A~~dl~----------------~A~~~~~~g~y~~a~F~aqQA~Ek 45 (141)
T 3o10_A 4 GNPVEARRWLRQARANFS----------------AARNDLHKNANEWVCFKCYLSTKL 45 (141)
T ss_dssp CCHHHHHHHHHHHHHHHH----------------HHGGGTTTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhhh----------------HHhhHHhhCccceEeeehhHHHHH
Confidence 566677777777654322 233344556666665555555443
No 354
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.27 E-value=2.3e+02 Score=19.87 Aligned_cols=113 Identities=10% Similarity=0.052 Sum_probs=65.2
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHH--HhhhcHHHHHHHHHHHHHHHHHh-cCcChHHHHHHHHHHHHHHHhhCchhHHHH
Q 016114 4 GIVDSLKDDEPLLDAILLHMGSMY--STLENYEKSMLVYQRVINVLESR-YGKTSILLVTSLLGMAKVLGSIGRAKKAVE 80 (395)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 80 (395)
..+.....++|-.... ..+-++. +-.|. ..=..++++++..+... .-.+++..+..+...+... +++..
T Consensus 15 ~~i~~y~gdDPL~~w~-~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~ 86 (152)
T 4a1g_A 15 AHMQSYKGNDPLGEWE-RYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQ 86 (152)
T ss_dssp HHTTSCCSSCHHHHHH-HHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHH
T ss_pred HHHHhCCCCCCHHHHH-HHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHH
Confidence 3344556666754432 1222221 12233 22345566666655332 1234567777776666542 34666
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114 81 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130 (395)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (395)
+|...... .-....+..|...|..+...|++.+|...|+.+++.
T Consensus 87 if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 87 FFEFLYNH------GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHTT------TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHC------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66554321 123345667788899999999999999999999875
Done!