Query 016116
Match_columns 395
No_of_seqs 342 out of 1483
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 9.8E-34 2.1E-38 302.6 8.5 237 97-337 216-529 (640)
2 cd05496 Bromo_WDR9_II Bromodom 100.0 6.4E-29 1.4E-33 212.5 10.8 107 102-213 4-111 (119)
3 cd05497 Bromo_Brdt_I_like Brom 100.0 2.5E-28 5.4E-33 205.4 11.3 101 104-207 6-106 (107)
4 cd05495 Bromo_cbp_like Bromodo 100.0 2.7E-28 5.9E-33 205.5 11.5 105 102-209 2-107 (108)
5 cd05505 Bromo_WSTF_like Bromod 99.9 5.7E-28 1.2E-32 199.7 9.8 94 106-204 3-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 2.1E-27 4.5E-32 196.9 9.8 99 104-205 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.1E-27 4.6E-32 196.4 9.7 96 105-205 2-97 (97)
8 cd05504 Bromo_Acf1_like Bromod 99.9 2.8E-27 6.2E-32 201.5 10.6 105 100-209 9-113 (115)
9 cd05502 Bromo_tif1_like Bromod 99.9 7.8E-27 1.7E-31 197.0 11.7 103 103-211 4-109 (109)
10 cd05507 Bromo_brd8_like Bromod 99.9 7E-27 1.5E-31 195.7 11.0 101 103-208 3-103 (104)
11 cd05498 Bromo_Brdt_II_like Bro 99.9 1.2E-26 2.6E-31 193.4 10.0 98 105-205 2-102 (102)
12 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.5E-26 3.2E-31 193.0 10.0 98 105-205 2-102 (102)
13 cd05508 Bromo_RACK7 Bromodomai 99.9 1.5E-26 3.3E-31 191.8 10.0 96 103-204 3-98 (99)
14 cd05510 Bromo_SPT7_like Bromod 99.9 2.8E-26 6.1E-31 194.4 11.1 102 102-208 6-109 (112)
15 cd05509 Bromo_gcn5_like Bromod 99.9 2.5E-26 5.5E-31 191.1 10.6 100 104-208 2-101 (101)
16 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.6E-26 5.7E-31 191.8 10.7 99 103-204 4-102 (103)
17 cd05501 Bromo_SP100C_like Brom 99.9 4.7E-26 1E-30 189.3 11.3 97 105-209 4-100 (102)
18 cd05528 Bromo_AAA Bromodomain; 99.9 7.3E-26 1.6E-30 191.9 11.1 104 103-211 3-110 (112)
19 cd05516 Bromo_SNF2L2 Bromodoma 99.9 4.6E-26 1E-30 191.7 9.4 100 103-207 1-106 (107)
20 cd05513 Bromo_brd7_like Bromod 99.9 2E-25 4.4E-30 184.8 9.9 92 104-200 2-93 (98)
21 cd05512 Bromo_brd1_like Bromod 99.9 4.8E-25 1E-29 182.6 9.8 91 105-200 3-93 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 4.9E-25 1.1E-29 186.9 10.0 99 107-210 4-102 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 6.7E-25 1.5E-29 183.3 8.9 96 105-205 2-103 (103)
24 cd05524 Bromo_polybromo_I Brom 99.9 1.5E-24 3.3E-29 184.1 9.6 102 104-210 3-110 (113)
25 cd05515 Bromo_polybromo_V Brom 99.9 2.5E-24 5.4E-29 180.6 9.4 96 106-206 3-104 (105)
26 cd05520 Bromo_polybromo_III Br 99.9 4.1E-24 8.8E-29 178.7 8.9 82 118-204 21-102 (103)
27 cd05518 Bromo_polybromo_IV Bro 99.9 3.9E-24 8.4E-29 178.8 8.6 100 99-204 3-102 (103)
28 cd05525 Bromo_ASH1 Bromodomain 99.9 7.5E-24 1.6E-28 177.9 9.7 96 104-204 3-104 (106)
29 smart00297 BROMO bromo domain. 99.9 1.7E-23 3.6E-28 174.8 10.9 101 102-207 6-106 (107)
30 cd05529 Bromo_WDR9_I_like Brom 99.9 1.7E-23 3.7E-28 181.4 11.2 99 103-206 24-126 (128)
31 cd05517 Bromo_polybromo_II Bro 99.9 7E-24 1.5E-28 177.2 8.4 93 106-203 3-101 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.7E-22 5.8E-27 168.0 10.0 82 118-204 22-103 (104)
33 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 5.4E-22 1.2E-26 166.6 9.8 96 104-206 2-103 (106)
34 PF00439 Bromodomain: Bromodom 99.9 4.7E-22 1E-26 159.0 8.0 84 108-196 1-84 (84)
35 cd04369 Bromodomain Bromodomai 99.9 6.3E-22 1.4E-26 160.9 8.8 95 106-205 3-99 (99)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 7.7E-21 1.7E-25 160.0 10.6 98 108-208 5-106 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.8 1.3E-18 2.9E-23 146.3 9.1 98 104-208 4-107 (110)
38 KOG1245 Chromatin remodeling c 99.7 1.3E-18 2.7E-23 197.7 7.2 97 108-210 1306-1402(1404)
39 COG5076 Transcription factor i 99.7 1.3E-17 2.8E-22 168.7 8.9 90 119-213 164-253 (371)
40 KOG1472 Histone acetyltransfer 99.6 1.7E-16 3.6E-21 168.6 6.7 143 63-210 562-708 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 2.9E-13 6.2E-18 115.2 4.8 83 103-185 3-89 (114)
42 KOG0008 Transcription initiati 99.0 4.2E-10 9.2E-15 124.7 5.8 94 107-205 1386-1479(1563)
43 KOG0955 PHD finger protein BR1 99.0 6.1E-10 1.3E-14 123.6 7.0 102 104-210 566-667 (1051)
44 cd05491 Bromo_TBP7_like Bromod 99.0 3.2E-10 6.9E-15 96.2 3.3 41 144-187 63-103 (119)
45 KOG0386 Chromatin remodeling c 99.0 7.9E-10 1.7E-14 120.2 7.0 100 106-210 1027-1132(1157)
46 KOG1827 Chromatin remodeling c 98.8 5.6E-09 1.2E-13 110.2 6.5 98 104-206 53-156 (629)
47 KOG0008 Transcription initiati 98.7 1.6E-08 3.6E-13 112.4 6.6 99 104-207 1262-1360(1563)
48 KOG1472 Histone acetyltransfer 98.7 8.2E-09 1.8E-13 110.6 4.2 81 117-202 300-380 (720)
49 KOG1474 Transcription initiati 98.6 1.3E-08 2.7E-13 110.0 1.5 91 115-208 4-94 (640)
50 KOG1828 IRF-2-binding protein 98.1 7.4E-07 1.6E-11 88.8 0.5 88 110-202 26-113 (418)
51 COG5076 Transcription factor i 98.0 1.6E-06 3.5E-11 88.1 1.5 159 32-206 190-361 (371)
52 KOG1828 IRF-2-binding protein 97.9 7.1E-06 1.5E-10 81.9 2.8 82 112-199 217-298 (418)
53 cd05493 Bromo_ALL-1 Bromodomai 96.0 0.0069 1.5E-07 52.7 3.7 68 145-215 59-126 (131)
54 KOG0644 Uncharacterized conser 86.4 0.59 1.3E-05 51.7 3.2 60 142-204 1050-1109(1113)
55 KOG0732 AAA+-type ATPase conta 85.7 0.52 1.1E-05 53.7 2.6 64 121-187 533-601 (1080)
56 KOG1827 Chromatin remodeling c 67.8 0.67 1.4E-05 50.1 -3.0 76 121-201 213-288 (629)
57 KOG0644 Uncharacterized conser 66.3 3.5 7.6E-05 45.9 2.0 65 125-195 87-181 (1113)
58 PF14372 DUF4413: Domain of un 66.2 16 0.00034 30.2 5.4 49 160-208 3-51 (101)
59 PF03670 UPF0184: Uncharacteri 59.9 22 0.00047 28.7 4.9 48 4-51 1-53 (83)
60 PF14933 CEP19: CEP19-like pro 47.4 69 0.0015 28.9 6.7 35 311-345 106-140 (159)
61 PF11116 DUF2624: Protein of u 42.9 35 0.00077 27.6 3.7 71 263-333 8-82 (85)
62 PHA01750 hypothetical protein 40.2 54 0.0012 25.3 4.0 29 24-52 42-70 (75)
63 PF10046 BLOC1_2: Biogenesis o 34.6 65 0.0014 26.5 4.2 32 24-55 59-90 (99)
64 PF04472 DUF552: Protein of un 33.9 1.5E+02 0.0032 22.8 5.9 42 288-337 10-51 (73)
65 PF04380 BMFP: Membrane fusoge 27.2 1.1E+02 0.0025 24.1 4.3 30 23-52 49-78 (79)
66 PF10393 Matrilin_ccoil: Trime 24.5 1.4E+02 0.0031 21.4 3.9 24 24-47 23-46 (47)
67 PF04508 Pox_A_type_inc: Viral 23.1 1.1E+02 0.0023 18.8 2.6 20 32-51 2-21 (23)
68 PF10078 DUF2316: Uncharacteri 21.6 65 0.0014 26.3 1.9 19 322-340 53-71 (89)
69 PF05377 FlaC_arch: Flagella a 21.1 2.1E+02 0.0046 21.3 4.3 32 24-55 14-45 (55)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=9.8e-34 Score=302.64 Aligned_cols=237 Identities=34% Similarity=0.529 Sum_probs=174.1
Q ss_pred hhccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhch
Q 016116 97 AGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 176 (395)
Q Consensus 97 ~~~~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LI 176 (395)
..+.+..++++|..||..|+.|+++|||..|||+..||+||||+||++||||+||+.||.++. |.++.+|++|||||
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~---Y~~~~eF~~DVRL~ 292 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGE---YKSAEEFAADVRLT 292 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccc---cCCHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCcCchHHHhhhHHHH----------------------HH---Hh-hhH
Q 016116 177 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEEEKRQEEEE----------------------AK---AQ-LDM 230 (395)
Q Consensus 177 f~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~~~~e~~~~~ee----------------------~~---~~-~~~ 230 (395)
|.||++||++|++||.||..|+++|+.+|..+.............+. .. .. ...
T Consensus 293 F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (640)
T KOG1474|consen 293 FDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSE 372 (640)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccc
Confidence 99999999999999999999999999999997665432211110000 00 00 000
Q ss_pred hHhHHHhhhhhHHHHhHhHHHhhHhHH-----------------------HH------------HHHHHhhhcCCCHHHH
Q 016116 231 QLTQEAVQTNKAKELRSELNEVDMQLE-----------------------NL------------RETVIQKCRKMSTEEK 275 (395)
Q Consensus 231 ~l~~~~~~~~~~~~l~~el~~~~~~le-----------------------~l------------~~~~~~~~r~mt~eEK 275 (395)
....+ ........+...+..+..++. .+ ........+.||..++
T Consensus 373 ~~~~~-e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~ 451 (640)
T KOG1474|consen 373 LMSEE-ERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEK 451 (640)
T ss_pred cccHH-hhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhcccccccccccccccccc
Confidence 00000 000000000000000000000 00 0011123478999999
Q ss_pred HHHHHHhccC-ChHhHHHHHHHH--HhcCCCCCCCCCeEEEeCCCCC-------------HHHHHHHHHHHHHHHHhc
Q 016116 276 KNLGTALTRL-SPEDLCKALEIV--AENNPSFHATAQEVDLDMDAQS-------------ELTLWRLKVFVQESLKAA 337 (395)
Q Consensus 276 ~~L~~~I~~L-~~e~L~~vi~II--~~~~P~~~~~~~evElDid~L~-------------~~TL~~L~~yV~~~L~~~ 337 (395)
..|...+..| ++..+..+++|+ ....+.+....+++++|++.++ ..|+|++..++...-...
T Consensus 452 ~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 529 (640)
T KOG1474|consen 452 AKLKELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTERELEL 529 (640)
T ss_pred ccchhhccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhHHHHH
Confidence 9999999994 999999999999 5567778788999999999999 999999998887653333
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=6.4e-29 Score=212.50 Aligned_cols=107 Identities=29% Similarity=0.489 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016116 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
.+|.++|..||..|++|+.++||+.||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||+
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~---Y~~~~ef~~D~~lif~Na~ 78 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGN---YDDPMEFAKDVRLIFSNSK 78 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999987 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCC-CCHHHHHHHHHHHHHHHHHHhhCcCch
Q 016116 182 KYNDE-RDDVHVMAKSLLEKFEEKWLQLLPKVM 213 (395)
Q Consensus 182 ~YN~~-~S~v~~~A~~L~~~Fe~~~~~~~~~~~ 213 (395)
+||++ +|.||.+|..|+..|+++|..+.+.+.
T Consensus 79 ~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 79 SYTPNKRSRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 999999999999999999999876543
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.5e-28 Score=205.39 Aligned_cols=101 Identities=37% Similarity=0.656 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016116 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
+.-.+..||..|++|+.|+||..||++..+++||||++|++||||+||++||+++. |.++.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na~~y 82 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNY---YWSASECIQDFNTMFTNCYIY 82 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 33355788999999999999999999987779999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 016116 184 NDERDDVHVMAKSLLEKFEEKWLQ 207 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~~~ 207 (395)
|+++|+++.+|..|++.|++++.+
T Consensus 83 N~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 83 NKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999875
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.7e-28 Score=205.52 Aligned_cols=105 Identities=31% Similarity=0.579 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhh
Q 016116 102 QELKRQFAAIFRQITQH-KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~-~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na 180 (395)
.+|.+.|..+++.|+++ +.||||..||++..+++||||++|++||||+||++||.++. |.++.+|.+||+|||.||
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQ---YQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHH
Confidence 36888999999999999 99999999999987779999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016116 181 MKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 181 ~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
+.||+++|.+|.+|..|++.|++.+..++
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987653
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5.7e-28 Score=199.74 Aligned_cols=94 Identities=30% Similarity=0.540 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCC
Q 016116 106 RQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYND 185 (395)
Q Consensus 106 ~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~ 185 (395)
+.|..||+.|++++.++||..||++.. +||||++|++||||+||++||+.+. |.|+.+|.+||+|||.||+.||+
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN~ 77 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGS---YSSVQEFLDDMKLVFSNAEKYYE 77 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHCC
Confidence 679999999999999999999999887 9999999999999999999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 016116 186 ERDDVHVMAKSLLEKFEEK 204 (395)
Q Consensus 186 ~~S~v~~~A~~L~~~Fe~~ 204 (395)
+||.|+.+|..|++.|.+.
T Consensus 78 ~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 78 NGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.1e-27 Score=196.88 Aligned_cols=99 Identities=48% Similarity=0.944 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016116 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
++++|..||+.|++++.+++|..||++...++|+||++|++||||+||++||+++. |.++.+|..||++||.||+.|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na~~y 77 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGE---YSSPEEFAADVRLTFANAMRY 77 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999886669999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 016116 184 NDERDDVHVMAKSLLEKFEEKW 205 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~ 205 (395)
|+++|.++.+|..|++.|+++|
T Consensus 78 n~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 78 NPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.1e-27 Score=196.40 Aligned_cols=96 Identities=34% Similarity=0.720 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccC
Q 016116 105 KRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 184 (395)
Q Consensus 105 ~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN 184 (395)
+..|..||..|++|+.+++|+.||++.. +|+||++|++||||+||++||+++. |.|+.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQ---YKTLEEFAEDVRLVFDNCETFN 76 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999987 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 016116 185 DERDDVHVMAKSLLEKFEEKW 205 (395)
Q Consensus 185 ~~~S~v~~~A~~L~~~Fe~~~ 205 (395)
+++|.++.+|..|++.|+.+|
T Consensus 77 ~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 77 EDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.8e-27 Score=201.46 Aligned_cols=105 Identities=32% Similarity=0.562 Sum_probs=99.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016116 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
.+......|..||..|+.++.+++|..||+... +||||++|++||||+||++||..+. |.|+.+|.+||+|||.|
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~---Y~s~~~f~~Dv~LI~~N 83 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGE---YKLAEEFLSDIQLVFSN 83 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCC---CCCHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999877 9999999999999999999999999 99999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 016116 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
|+.||+++|.+|.+|..|+++|+++++++.
T Consensus 84 a~~yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 84 CFLYNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998763
No 9
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.8e-27 Score=196.95 Aligned_cols=103 Identities=36% Similarity=0.625 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCC---CCCCCCCHHHHHHHHhchhhh
Q 016116 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGK---DGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~---~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
...+.|..||..|++|+.++||..||++ . +|+||++|++||||+||++||+.+ . |.++++|.+||+|||.|
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~---Y~s~~~f~~D~~li~~N 77 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQH---YSSPEEFVADVRLMFKN 77 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998 4 999999999999999999999984 6 99999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhhCcC
Q 016116 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 211 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~ 211 (395)
|+.||+++|.++.+|..|+..|+++|.+++|.
T Consensus 78 a~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 78 CYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999873
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7e-27 Score=195.70 Aligned_cols=101 Identities=32% Similarity=0.528 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016116 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
.|.+.|..|+..|+.|+.++||..||+... +||||++|++||||+||++||+++. |.++++|.+||+|||.||..
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~ 77 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGT---IRSTAEFQRDVLLMFQNAIM 77 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999876 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016116 183 YNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
||+++|.+|.+|..|++.|...+..+
T Consensus 78 yN~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 78 YNSSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999887653
No 11
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.2e-26 Score=193.36 Aligned_cols=98 Identities=46% Similarity=0.901 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016116 105 KRQFAAIFRQITQH---KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 105 ~~~~~~il~~l~~~---~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
++.|..||..|+++ +.++||+.||++...++||||++|++||||+||++||.++. |.++.+|..||+|||.||+
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~---Y~s~~ef~~D~~li~~Na~ 78 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNRE---YADAQEFAADVRLMFSNCY 78 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHH
Confidence 46899999999999 89999999999986679999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q 016116 182 KYNDERDDVHVMAKSLLEKFEEKW 205 (395)
Q Consensus 182 ~YN~~~S~v~~~A~~L~~~Fe~~~ 205 (395)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 79 KYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987
No 12
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=192.97 Aligned_cols=98 Identities=36% Similarity=0.773 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016116 105 KRQFAAIFRQITQH---KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 105 ~~~~~~il~~l~~~---~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
++.|..||..|+++ +.++||+.||++...++||||++|++||||+||++||+++. |.++.+|.+||+|||.||+
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~---Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQ---YQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHH
Confidence 36799999999994 57999999999985559999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q 016116 182 KYNDERDDVHVMAKSLLEKFEEKW 205 (395)
Q Consensus 182 ~YN~~~S~v~~~A~~L~~~Fe~~~ 205 (395)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987
No 13
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=191.84 Aligned_cols=96 Identities=28% Similarity=0.514 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016116 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
++...|..++..|. |+.+|||..||++.. +||||++|++||||+||++||+++. |.++++|.+||+|||.||+.
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~LI~~Na~~ 76 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKA---YGSTDAFLADAKWILHNAII 76 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 56667888899998 999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 016116 183 YNDERDDVHVMAKSLLEKFEEK 204 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~ 204 (395)
||+++|.++.+|..|.+.|+..
T Consensus 77 YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 77 YNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred HCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 14
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.8e-26 Score=194.37 Aligned_cols=102 Identities=25% Similarity=0.478 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhh
Q 016116 102 QELKRQFAAIFRQITQH-KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~-~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na 180 (395)
.++...|..|+..|++| +.++||+.||++.. +||||++|++||||+||++||.++. |+++.+|.+||+|||.||
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~Li~~N~ 80 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQ---YKSKAEFVDDLNLIWKNC 80 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHH
Confidence 36888999999999999 89999999999987 9999999999999999999999999 999999999999999999
Q ss_pred cccCCCCC-HHHHHHHHHHHHHHHHHHhh
Q 016116 181 MKYNDERD-DVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 181 ~~YN~~~S-~v~~~A~~L~~~Fe~~~~~~ 208 (395)
+.||+++| .++.+|..|++.|+..+..+
T Consensus 81 ~~yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 81 LLYNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999876 67899999999999998776
No 15
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.5e-26 Score=191.11 Aligned_cols=100 Identities=38% Similarity=0.653 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016116 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
++.+|..|++.|++|+.+++|..||++.. +|+||++|++||||+||++||.++. |.++.+|..||+|||.||+.|
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~li~~Na~~y 76 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGY---YVTLEEFVADLKLIFDNCRLY 76 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999988 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 016116 184 NDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
|+++|.++.+|..|+..|+++++++
T Consensus 77 N~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 77 NGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998653
No 16
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.6e-26 Score=191.84 Aligned_cols=99 Identities=32% Similarity=0.526 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016116 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
.+.+.|..|++.|++++.++||..||++...++||||++|++||||+||+.||.++. |.++.+|..||+|||.||+.
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNV---YTSVEEFTADFNLMVDNCLT 80 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 466799999999999999999999999887779999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 016116 183 YNDERDDVHVMAKSLLEKFEEK 204 (395)
Q Consensus 183 YN~~~S~v~~~A~~L~~~Fe~~ 204 (395)
||+++|.++.+|..|++.|++.
T Consensus 81 yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 81 FNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 17
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.7e-26 Score=189.27 Aligned_cols=97 Identities=20% Similarity=0.349 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccC
Q 016116 105 KRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 184 (395)
Q Consensus 105 ~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN 184 (395)
++.|..|+..|.+++.+++|..++ .. +||||++|++||||+||++||.++. |.++++|.+||+|||.||+.||
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~p--~~--~pdY~~iIk~PMDL~tI~~kL~~~~---Y~s~~ef~~D~~Lif~N~~~yN 76 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISKP--YY--IRDYCQGIKEPMWLNKVKERLNERV---YHTVEGFVRDMRLIFHNHKLFY 76 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCCC--CC--CCchHHHcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHc
Confidence 456999999999999999997743 33 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhC
Q 016116 185 DERDDVHVMAKSLLEKFEEKWLQLL 209 (395)
Q Consensus 185 ~~~S~v~~~A~~L~~~Fe~~~~~~~ 209 (395)
+++ .++.+|..|++.|+++|.+++
T Consensus 77 ~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 77 KDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999998875
No 18
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.93 E-value=7.3e-26 Score=191.87 Aligned_cols=104 Identities=29% Similarity=0.503 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcc
Q 016116 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~ 182 (395)
++...|..|+..|+.|+.+++|..||++.. +||||++|++||||+||++||+++. |.|+.+|.+||+|||.||+.
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~---Y~s~~ef~~Dv~li~~Na~~ 77 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQ---YLTAKDFLKDIDLIVTNALE 77 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCC---cCCHHHHHHHHHHHHHHHHH
Confidence 566688999999999999999999999988 9999999999999999999999999 99999999999999999999
Q ss_pred cCCC----CCHHHHHHHHHHHHHHHHHHhhCcC
Q 016116 183 YNDE----RDDVHVMAKSLLEKFEEKWLQLLPK 211 (395)
Q Consensus 183 YN~~----~S~v~~~A~~L~~~Fe~~~~~~~~~ 211 (395)
||++ ||.++.+|..|++.|.+++.+.+|.
T Consensus 78 yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 78 YNPDRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred HCCCCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999 4799999999999999999988774
No 19
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.6e-26 Score=191.69 Aligned_cols=100 Identities=28% Similarity=0.427 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhch
Q 016116 103 ELKRQFAAIFRQITQHKW------AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 176 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~------a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LI 176 (395)
+|.++|..|++.|..+.. ++||..||+... +||||++|++||||+||++||.++. |.++.+|..||.||
T Consensus 1 ~l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~---Y~s~~ef~~D~~li 75 (107)
T cd05516 1 ELTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLEDLEKDVMLL 75 (107)
T ss_pred CHHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHHHH
Confidence 366789999999998876 899999999887 9999999999999999999999999 99999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHh
Q 016116 177 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQ 207 (395)
Q Consensus 177 f~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~ 207 (395)
|.||+.||++||.+|.+|..|++.|++.++.
T Consensus 76 ~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 76 CQNAQTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998865
No 20
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2e-25 Score=184.78 Aligned_cols=92 Identities=34% Similarity=0.499 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016116 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
|...|..|++.|+.++.+++|..||+... +||||++|++||||+||++||+++. |.++.+|.+||+|||.||+.|
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~y 76 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNND---YQSIEEFKDDFKLMCENAMKY 76 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999877 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 016116 184 NDERDDVHVMAKSLLEK 200 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~ 200 (395)
|+++|.+|.+|..|...
T Consensus 77 N~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 77 NKPDTIYYKAAKKLLHS 93 (98)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998664
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.8e-25 Score=182.64 Aligned_cols=91 Identities=29% Similarity=0.505 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccC
Q 016116 105 KRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 184 (395)
Q Consensus 105 ~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN 184 (395)
...|..++++|+.|+.+++|..||+... +||||++|++||||+||++||.++. |.++++|..||+|||.||+.||
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN 77 (98)
T cd05512 3 EVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQR---YRTLEDFEADFNLIINNCLAYN 77 (98)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHC
Confidence 3468899999999999999999999987 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 016116 185 DERDDVHVMAKSLLEK 200 (395)
Q Consensus 185 ~~~S~v~~~A~~L~~~ 200 (395)
+++|.+|.+|..|++.
T Consensus 78 ~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 78 AKDTIFYRAAVRLRDQ 93 (98)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999764
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.9e-25 Score=186.91 Aligned_cols=99 Identities=29% Similarity=0.535 Sum_probs=94.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCC
Q 016116 107 QFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDE 186 (395)
Q Consensus 107 ~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~ 186 (395)
.+..|+.+|++|+.++||..||++.. +|+||++|++||||+||++||.++. |.++.+|.+||+|||.||+.||++
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~---Y~s~~ef~~Dv~li~~Na~~yN~~ 78 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHK---YQSREEFLEDIELIVDNSVLYNGP 78 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999987 9999999999999999999999999 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCc
Q 016116 187 RDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 187 ~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
+|.++.+|..|...|+..+..+..
T Consensus 79 ~s~i~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 79 DSVYTKKAKEMLELAEELLAEREE 102 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999987743
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=6.7e-25 Score=183.35 Aligned_cols=96 Identities=27% Similarity=0.505 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHH------cCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhh
Q 016116 105 KRQFAAIFRQIT------QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (395)
Q Consensus 105 ~~~~~~il~~l~------~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~ 178 (395)
.+.|..|++.|+ .++.+++|..||+... +||||++|++||||+||++||+.+. |.++.+|..||+|||.
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~---Y~s~~~f~~D~~li~~ 76 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRA---YKSLEEFLEDFHLMFA 76 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHH
Confidence 467888888888 4456999999999888 9999999999999999999999999 9999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHH
Q 016116 179 NAMKYNDERDDVHVMAKSLLEKFEEKW 205 (395)
Q Consensus 179 Na~~YN~~~S~v~~~A~~L~~~Fe~~~ 205 (395)
||+.||+++|.+|.+|..|++.|++++
T Consensus 77 Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 77 NARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998864
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.5e-24 Score=184.14 Aligned_cols=102 Identities=24% Similarity=0.364 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchh
Q 016116 104 LKRQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 104 l~~~~~~il~~l~~~------~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf 177 (395)
..+.|..|++.|+++ +.+.+|..+|+... +||||++|++||||+||++||.++. |.++.+|.+||+|||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~---Y~s~~~f~~D~~lm~ 77 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEE---YDDVDDLTADFELLI 77 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCC---CCCHHHHHHHHHHHH
Confidence 457899999999965 45678999999877 9999999999999999999999999 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016116 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
.||+.||+++|.+|.+|..|++.|++.+.++.+
T Consensus 78 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 78 NNAKAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999887754
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=2.5e-24 Score=180.56 Aligned_cols=96 Identities=26% Similarity=0.504 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016116 106 RQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 106 ~~~~~il~~l~~~------~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
.+|..|++.|..+ +.+++|+.||+... +||||++|++||||+||++||.++. |.++++|..||.|||.|
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~l~~~N 77 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQ---YQSLDDMVSDFVLMFDN 77 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHHH
Confidence 4566666666654 56899999999988 9999999999999999999999999 99999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHH
Q 016116 180 AMKYNDERDDVHVMAKSLLEKFEEKWL 206 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~~~~ 206 (395)
|+.||+++|.+|.+|..|++.|.+...
T Consensus 78 a~~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 78 ACKYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999988753
No 26
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=4.1e-24 Score=178.65 Aligned_cols=82 Identities=28% Similarity=0.504 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHHH
Q 016116 118 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSL 197 (395)
Q Consensus 118 ~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~L 197 (395)
++.++||+.||+... +||||++|++||||+||+.||.++. |.++.+|..||+|||.||+.||+++|.+|.+|..|
T Consensus 21 ~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L 95 (103)
T cd05520 21 QLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGE---YETLEELEADLNLMFENAKRYNVPNSRIYKDAEKL 95 (103)
T ss_pred CCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 357999999999887 9999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 016116 198 LEKFEEK 204 (395)
Q Consensus 198 ~~~Fe~~ 204 (395)
+++|+++
T Consensus 96 ~~~f~~~ 102 (103)
T cd05520 96 QKLMQAK 102 (103)
T ss_pred HHHHHHh
Confidence 9999875
No 27
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=3.9e-24 Score=178.76 Aligned_cols=100 Identities=28% Similarity=0.421 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhh
Q 016116 99 RRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (395)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~ 178 (395)
++|..++..+....+ ...+..+.+|+.+|+... +||||++|++||||+||+.||.++. |.++.+|.+||+|||.
T Consensus 3 ~~~~~l~~~v~~~~d-~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~---Y~s~~ef~~D~~li~~ 76 (103)
T cd05518 3 KRMLALFLYVLEYRE-GSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDK---YATEEELMDDFKLMFR 76 (103)
T ss_pred HHHHHHHHHHHHhhc-cCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCC---CCCHHHHHHHHHHHHH
Confidence 344455544444422 345678999999999988 9999999999999999999999999 9999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHH
Q 016116 179 NAMKYNDERDDVHVMAKSLLEKFEEK 204 (395)
Q Consensus 179 Na~~YN~~~S~v~~~A~~L~~~Fe~~ 204 (395)
||+.||++||.||.+|..|+++|+++
T Consensus 77 Na~~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 77 NARHYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999864
No 28
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.5e-24 Score=177.90 Aligned_cols=96 Identities=27% Similarity=0.383 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchh
Q 016116 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf 177 (395)
|...|..|++.|..++ .++||+.+|++.. +||||++|++||||+||+.||.++. |.++++|..||.|||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~---Y~s~~ef~~D~~l~f 77 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGY---YKTPEAFDSDMLKVF 77 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCC---CCCHHHHHHHHHHHH
Confidence 4456777777777654 5799999999988 9999999999999999999999999 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHH
Q 016116 178 KNAMKYNDERDDVHVMAKSLLEKFEEK 204 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~ 204 (395)
.||+.||+++|.+|.+|..|++.|++.
T Consensus 78 ~Na~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 78 RNAEKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999864
No 29
>smart00297 BROMO bromo domain.
Probab=99.90 E-value=1.7e-23 Score=174.84 Aligned_cols=101 Identities=41% Similarity=0.732 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhc
Q 016116 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (395)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~ 181 (395)
..+...|..|+..+.+|+.+++|..||++.. +|+||++|++||||++|++||+++. |.++.+|.+||++||.||+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~---Y~s~~ef~~D~~li~~Na~ 80 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGK---YSSVEEFVADVQLMFSNAK 80 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999999988 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHh
Q 016116 182 KYNDERDDVHVMAKSLLEKFEEKWLQ 207 (395)
Q Consensus 182 ~YN~~~S~v~~~A~~L~~~Fe~~~~~ 207 (395)
.||+++|.++.+|..|...|++.|++
T Consensus 81 ~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 81 TYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
No 30
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.7e-23 Score=181.44 Aligned_cols=99 Identities=26% Similarity=0.437 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHH---cCCCCCCCCCCCCcc-ccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhh
Q 016116 103 ELKRQFAAIFRQIT---QHKWAWPFMHPVDVE-GLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (395)
Q Consensus 103 ~l~~~~~~il~~l~---~~~~a~~F~~PVd~~-~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~ 178 (395)
++...|..++..|+ +++.+++|..||+.. . +|+||++|++||||+||++||.++. |.++++|..||+|||.
T Consensus 24 ~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~--~p~Y~~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 24 EERERLISGLDKLLLSLQLEIAEYFEYPVDLRAW--YPDYWNRVPVPMDLETIRSRLENRY---YRSLEALRHDVRLILS 98 (128)
T ss_pred HHHHHHHHHHHHHHhcccCcccccccCCCCcccc--CCcHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHH
Confidence 45567888888898 899999999999998 6 9999999999999999999999999 9999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 016116 179 NAMKYNDERDDVHVMAKSLLEKFEEKWL 206 (395)
Q Consensus 179 Na~~YN~~~S~v~~~A~~L~~~Fe~~~~ 206 (395)
||+.||+++|.++.+|..|+..|...+.
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998874
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=7e-24 Score=177.23 Aligned_cols=93 Identities=22% Similarity=0.385 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016116 106 RQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 106 ~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
+.|..|++.|+.+. .+++|..+|+... +||||++|++||||+||++||.++. |.++.+|..||+|||.|
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~lm~~N 77 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGY---YKSIEDMEKDLDLMVKN 77 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCC---CCCHHHHHHHHHHHHHH
Confidence 46777777777754 5799999999988 9999999999999999999999999 99999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHH
Q 016116 180 AMKYNDERDDVHVMAKSLLEKFEE 203 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~ 203 (395)
|+.||++||.+|.+|..|++.|+.
T Consensus 78 a~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 78 AKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999975
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.7e-22 Score=167.98 Aligned_cols=82 Identities=23% Similarity=0.358 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHHH
Q 016116 118 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSL 197 (395)
Q Consensus 118 ~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~L 197 (395)
++.+++|+.+|+... +||||++|++||||+||++||..+. |.++.+|..||+|||.||+.||+++|.+|.+|..|
T Consensus 22 ~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l 96 (104)
T cd05522 22 RLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRK---YKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLL 96 (104)
T ss_pred CcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 578999999999887 9999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 016116 198 LEKFEEK 204 (395)
Q Consensus 198 ~~~Fe~~ 204 (395)
++.|+..
T Consensus 97 ~~~f~~l 103 (104)
T cd05522 97 EKEARLL 103 (104)
T ss_pred HHHHHHh
Confidence 9999873
No 33
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.4e-22 Score=166.59 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchh
Q 016116 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf 177 (395)
|.++|..|++.|+..+ .+.+|..+|+... +||||++|++||||+||++||.+ |.++.+|.+||.|||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~-----Y~s~~ef~~D~~li~ 74 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH-----YTNAQEFVNDLAQIP 74 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 4466777888777654 4679999998877 99999999999999999999996 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 016116 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWL 206 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~ 206 (395)
.||+.||++||.+|.+|..|+++|..++.
T Consensus 75 ~Na~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 75 WNARLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998763
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.86 E-value=4.7e-22 Score=158.99 Aligned_cols=84 Identities=38% Similarity=0.706 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCC
Q 016116 108 FAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 187 (395)
Q Consensus 108 ~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~ 187 (395)
|..|++.|++|+.+++|..||+... +|+|+++|++||||++|+.||+++. |.++.+|..||++||.||+.||+++
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~---Y~s~~~f~~Dv~~i~~Na~~yn~~~ 75 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGK---YKSIEEFEADVRLIFQNARRYNPPD 75 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTS---SSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccc---hhhHHHHHHHHHHHHHHHHHHCCCc
Confidence 8899999999999999999998887 9999999999999999999999999 9999999999999999999999999
Q ss_pred CHHHHHHHH
Q 016116 188 DDVHVMAKS 196 (395)
Q Consensus 188 S~v~~~A~~ 196 (395)
|.+|.+|.+
T Consensus 76 s~~~~~A~~ 84 (84)
T PF00439_consen 76 SPIYKAAEK 84 (84)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHhcC
Confidence 999999974
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.86 E-value=6.3e-22 Score=160.88 Aligned_cols=95 Identities=38% Similarity=0.646 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016116 106 RQFAAIFRQITQH--KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 106 ~~~~~il~~l~~~--~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
..|..|++.+..+ +.+++|..||++.. +|+||++|++||||++|+.||..+. |.++.+|.+||++||.||+.|
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~---Y~s~~~f~~D~~li~~Na~~~ 77 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGE---YKSLEEFEADVRLIFSNAKTY 77 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999999 99999999999977 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 016116 184 NDERDDVHVMAKSLLEKFEEKW 205 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~ 205 (395)
|+++|.++.+|..|...|++.|
T Consensus 78 n~~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 78 NGPGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=7.7e-21 Score=160.03 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHHHHHHHHc-CCCCCCCCCCCCcc---ccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016116 108 FAAIFRQITQ-HKWAWPFMHPVDVE---GLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 108 ~~~il~~l~~-~~~a~~F~~PVd~~---~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
+..++..+.+ -+.++||..||... ..++|+||++|++||||+||++||.++. |+++++|.+||.|||+||..|
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEK---YTSLEEFKADALLLLHNTAIF 81 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 4456677766 56789999999733 3349999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 016116 184 NDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
|+++|.++.+|..|.......+.++
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877666544
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.77 E-value=1.3e-18 Score=146.28 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchh
Q 016116 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf 177 (395)
+...+..|+..+++|. .+.+|++.|+ . .|+||.+|+.||||.+|++||..+. |.++++|..||.+||
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~---Y~~ld~~~~D~~lmf 76 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGR---YRRLDKFQEDMFEVL 76 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCC---cCcHHHHHHHHHHHH
Confidence 3446677888888875 6899999888 2 6788999999999999999999999 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016116 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
.||++||.+||.+|.+|..|+.+|.....++
T Consensus 77 ~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 77 ERARRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHHHHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.74 E-value=1.3e-18 Score=197.73 Aligned_cols=97 Identities=35% Similarity=0.732 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCC
Q 016116 108 FAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 187 (395)
Q Consensus 108 ~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~ 187 (395)
|..|+.+|+.|..||||++||++.. +||||+||++||||+||+.++..+. |.++.+|..||.|||.||.+||.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~---Y~~~eef~~Di~lvf~Nc~~yN~~- 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGI---YPSPEEFATDIELVFDNCETYNED- 1379 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhccc---CCCHHHHHHHHHHHHHHHHHhccc-
Confidence 8999999999999999999999999 9999999999999999999999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCc
Q 016116 188 DDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 188 S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
|.++.++..|..+|+..|...+|
T Consensus 1380 s~i~~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1380 SEIGRAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred hhhhhhcchHHHHHHHHHHhhcC
Confidence 99999999999999999987765
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.71 E-value=1.3e-17 Score=168.69 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=85.6
Q ss_pred CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHHHH
Q 016116 119 KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLL 198 (395)
Q Consensus 119 ~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~L~ 198 (395)
..+++|+.+|+... +|+||.||+.||||++|+++|..+. |.++++|..|+.|||.||.+||+++|.||.+|..|+
T Consensus 164 ~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~---Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~ 238 (371)
T COG5076 164 FLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGR---YKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELE 238 (371)
T ss_pred ccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhh---hhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHH
Confidence 57999999999998 9999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCcCch
Q 016116 199 EKFEEKWLQLLPKVM 213 (395)
Q Consensus 199 ~~Fe~~~~~~~~~~~ 213 (395)
..|...+..+.+...
T Consensus 239 ~~~~~~i~~~~~~~~ 253 (371)
T COG5076 239 KYFLKLIEEIPEEML 253 (371)
T ss_pred HHHHHHHHhccccch
Confidence 999999998866543
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=1.7e-16 Score=168.56 Aligned_cols=143 Identities=25% Similarity=0.401 Sum_probs=118.4
Q ss_pred CCCCCchhhhccccCCC---CCchhhhhhhhhhhhHh-hhccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCch
Q 016116 63 NTSKSISIAKEKLKDRH---VASIEKQQQDAFHREEA-AGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDY 138 (395)
Q Consensus 63 ~~~~g~s~~k~~~r~r~---~~~~kk~~~~~~~~e~~-~~~~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdY 138 (395)
.+++|.++++++....+ +|+.+...+.....+-. .......+...+..|+.+|..|..+|||..||...+ +|||
T Consensus 562 kv~~gl~~~~~~~~~~~~~~iPg~~E~~~~~~~~~~r~~~~~~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdy 639 (720)
T KOG1472|consen 562 KVYPGLECFKDGVPQIPPRKIPGFRESGWKPEKESYRQEYKKPGKLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDY 639 (720)
T ss_pred ccccccccccccccccCcccCCCchhhccCcchHHHHhhhcccchhhHHHHhHHhhhhcCCccCCccCcccccc--CCcH
Confidence 37899999998866554 44444433322211111 113344566788999999999999999999999998 9999
Q ss_pred hhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016116 139 YEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 139 y~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
|.+|++||||.||+.+|..+. |..+..|++|+..||.||+.||+..+..|..|..|...|..++...+.
T Consensus 640 y~~I~~pmDl~tM~~~l~~~~---y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 640 YDVIKHPMDLRTMQNRLKDNQ---YTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred HHHhcccccHHHHhhhccccc---hhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhhhh
Confidence 999999999999999999999 999999999999999999999999999999999999999988876643
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.39 E-value=2.9e-13 Score=115.22 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCC----CCCCCCHHHHHHHHhchhh
Q 016116 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKD----GTGYRNVREIYADVRLVFK 178 (395)
Q Consensus 103 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~----~~~Y~s~~ef~~Dv~LIf~ 178 (395)
+.+..|..++..++.++.+|||..||++...++||||++|++||||+||+.+|.... ...|..-..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 345678888888888999999999999966669999999999999999999999863 1125555566777777777
Q ss_pred hhcccCC
Q 016116 179 NAMKYND 185 (395)
Q Consensus 179 Na~~YN~ 185 (395)
||..+|.
T Consensus 83 ~~~~~~~ 89 (114)
T cd05494 83 RRSPSNI 89 (114)
T ss_pred ccCcccc
Confidence 7777765
No 42
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.98 E-value=4.2e-10 Score=124.71 Aligned_cols=94 Identities=28% Similarity=0.494 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCC
Q 016116 107 QFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDE 186 (395)
Q Consensus 107 ~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~ 186 (395)
.+-.|+.+++.-+.+|+|.+||+++. +|+||.+|++||||.+|.+++..+. |.+.++|.+||++|+.||..||+.
T Consensus 1386 ~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~---y~s~~e~l~dv~~i~~n~~~~ng~ 1460 (1563)
T KOG0008|consen 1386 ILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHK---YDSRSEFLDDVNLIYVNSVEYNGA 1460 (1563)
T ss_pred hhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccc---cccHHHHhhhhHhhcccceeecCc
Confidence 34567888888899999999999999 9999999999999999999999999 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 016116 187 RDDVHVMAKSLLEKFEEKW 205 (395)
Q Consensus 187 ~S~v~~~A~~L~~~Fe~~~ 205 (395)
.+.+..-|+.+-++-...+
T Consensus 1461 e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1461 ESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9998888887666655444
No 43
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.98 E-value=6.1e-10 Score=123.55 Aligned_cols=102 Identities=27% Similarity=0.427 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016116 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
..+.+..+++.+...+-...|..||+..+ +|||.++|++||||.|++.++.++. |.++++|.+|+.||..||+.|
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~---y~tle~ieed~~l~~~nc~~y 640 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGA---YSTLEPIEEDVNLIVSNCMEY 640 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccc---hhhhhHHHHhHhHhHhHHHHh
Confidence 44556788889999999999999999998 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016116 184 NDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
|.-+..+|..|..+++.....+.....
T Consensus 641 n~~dtv~~r~av~~~e~~~~~~~~ark 667 (1051)
T KOG0955|consen 641 NAKDTVYYRAAVRLRELIKKDFRNARK 667 (1051)
T ss_pred hccCeehHhhhHHHHhhhhhHHHhccc
Confidence 999999999999999998887766543
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.97 E-value=3.2e-10 Score=96.21 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCC
Q 016116 144 KPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 187 (395)
Q Consensus 144 ~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~ 187 (395)
.||||+||++||.++. |.++.+|++||+|||.||+.||.++
T Consensus 63 y~MDL~tIe~RL~ng~---Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGY---YATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 6899999999999999 9999999999999999999999863
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.97 E-value=7.9e-10 Score=120.18 Aligned_cols=100 Identities=26% Similarity=0.405 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhh
Q 016116 106 RQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (395)
Q Consensus 106 ~~~~~il~~l~~~------~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~N 179 (395)
+.|..|+.....+ ..+..|...++.+. +||||.||+.||++..|.++|..+. |.+..+...||.++|.|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~n 1101 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHK---YNSLKELEKDFMLLFNN 1101 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccc---cchHHHHHHHHHhhcch
Confidence 4577788777754 45889999999998 9999999999999999999999999 99999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 016116 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (395)
Q Consensus 180 a~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~ 210 (395)
|+.||.+||.||.+|..|+.+|......+..
T Consensus 1102 a~~~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1102 ARTYNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hhhhccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999998877754
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.81 E-value=5.6e-09 Score=110.21 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchh
Q 016116 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (395)
Q Consensus 104 l~~~~~~il~~l~~~~------~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf 177 (395)
+..++..||..+..+. ....|.+.++... .|+||.+|..||.|..|+.|+..+. |.+.+.|..|+.|||
T Consensus 53 ~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~---y~~~~~f~~D~~lm~ 127 (629)
T KOG1827|consen 53 LIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGR---YKRLSFFQLDFLLMT 127 (629)
T ss_pred HHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcc---cccHHHHHHHHHHHH
Confidence 4446777777776663 5788999999998 9999999999999999999999999 999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 016116 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWL 206 (395)
Q Consensus 178 ~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~ 206 (395)
.||+.||.++|.+|.+|..|+..|.....
T Consensus 128 ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 128 ENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 99999999999999999999999987653
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.71 E-value=1.6e-08 Score=112.45 Aligned_cols=99 Identities=27% Similarity=0.446 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhccc
Q 016116 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (395)
Q Consensus 104 l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~Y 183 (395)
+...+..|+.++...+...+|..||+.+. ++|||.||+.||||.|+++.+.... |.+-++|..|+.||++|..+|
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~---y~~r~~fle~~~~~~~ns~~y 1336 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRL---YESREHFLEELPLIVSNSTKY 1336 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHH---HHHHHHHHHHhHHHhhchhhh
Confidence 44457889999999999999999999998 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 016116 184 NDERDDVHVMAKSLLEKFEEKWLQ 207 (395)
Q Consensus 184 N~~~S~v~~~A~~L~~~Fe~~~~~ 207 (395)
|++-+.+...+..+....-+.|..
T Consensus 1337 ng~~~~~t~~~q~mls~~~~~~~e 1360 (1563)
T KOG0008|consen 1337 NGPLASLTRQQQSMLSLCFEKLKE 1360 (1563)
T ss_pred cCchHHHHHHHHHHHHHHHHhhch
Confidence 999999998888877766655543
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.71 E-value=8.2e-09 Score=110.55 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=70.5
Q ss_pred cCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHH
Q 016116 117 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 196 (395)
Q Consensus 117 ~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~ 196 (395)
.+..+++|..+|+... .|+||.||+.||||+|+..++.... |.+.++|+.|+.+||.||..||.+.+.....-..
T Consensus 300 ~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~---y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~v 374 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGP---YCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAV 374 (720)
T ss_pred ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhcccc---ccchhHHHHHHHHHHhcchhhccccchhhhhhhh
Confidence 4889999999999998 9999999999999999999999999 9999999999999999999999976655444444
Q ss_pred HHHHHH
Q 016116 197 LLEKFE 202 (395)
Q Consensus 197 L~~~Fe 202 (395)
+..-+.
T Consensus 375 v~~~~s 380 (720)
T KOG1472|consen 375 IMNSKS 380 (720)
T ss_pred hhccCc
Confidence 443333
No 49
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.60 E-value=1.3e-08 Score=110.00 Aligned_cols=91 Identities=40% Similarity=0.698 Sum_probs=84.6
Q ss_pred HHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHH
Q 016116 115 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMA 194 (395)
Q Consensus 115 l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A 194 (395)
...|.++|+|..||+...+++|+||.+|++|||++||..++.++. |.+..+..+|+.-+|.||..||..+.+|+.++
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~---~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~ 80 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNY---YFSASECIADFKTKFSNCYLFNDSGDDVVRMK 80 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCc---cccHhhhhhhccccccchhcccCCccchhhcc
Confidence 456889999999999999999999999999999999999999966 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 016116 195 KSLLEKFEEKWLQL 208 (395)
Q Consensus 195 ~~L~~~Fe~~~~~~ 208 (395)
..++..|.......
T Consensus 81 ~~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 81 QSLEKLFPKKLRSM 94 (640)
T ss_pred ccchhhcccccccc
Confidence 99999997665554
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.09 E-value=7.4e-07 Score=88.78 Aligned_cols=88 Identities=26% Similarity=0.263 Sum_probs=76.9
Q ss_pred HHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCH
Q 016116 110 AIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDD 189 (395)
Q Consensus 110 ~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~ 189 (395)
.++..+-+...-..|..||.... .|+|.+||+.|||+.|++.+++-+. |.+..+|..|.+++..||..||...+.
T Consensus 26 hhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~---yl~L~~m~~d~kl~~~na~~yn~~~Tv 100 (418)
T KOG1828|consen 26 HHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTR---YLVLSQMEFDRKLPDGNATLYNLHPTV 100 (418)
T ss_pred HHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCcc---ceechhhhhhhcccccchhhhhcCCcc
Confidence 44555555555667777888887 9999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 016116 190 VHVMAKSLLEKFE 202 (395)
Q Consensus 190 v~~~A~~L~~~Fe 202 (395)
++..|++|..+-.
T Consensus 101 ~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 101 PIVAAKRLCPVRL 113 (418)
T ss_pred ccccccccchhhc
Confidence 9999999876644
No 51
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.03 E-value=1.6e-06 Score=88.09 Aligned_cols=159 Identities=23% Similarity=0.317 Sum_probs=117.8
Q ss_pred HHHHHHHHH-----HHHHHHhhhhhhhhccCCCCCCCCCCCchhhhccccCCC--------CCchhhhhhhhhhhhHhhh
Q 016116 32 TIDDILQKV-----TQLEQKLNDVEQFYLTKDNNQPNTSKSISIAKEKLKDRH--------VASIEKQQQDAFHREEAAG 98 (395)
Q Consensus 32 ~l~~i~~k~-----~~le~~~~~~~~~~~~~~~~~~~~~~g~s~~k~~~r~r~--------~~~~kk~~~~~~~~e~~~~ 98 (395)
.|..|+.++ ..+|+-+.+...|++++..+ +.+++++...+..... ++.... ........ .
T Consensus 190 ~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~y---N~~~s~v~~~a~~l~~~~~~~i~~~~~~~~---~~~~~~~~-~ 262 (371)
T COG5076 190 DLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLY---NGPDSSVYVDAKELEKYFLKLIEEIPEEML---ELSIKPGR-E 262 (371)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc---cCCCcchhhhhHHHHHHHHHHHHhccccch---hhccCccc-c
Confidence 356677766 68999999999999999988 6677666654322110 000000 00000000 0
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhh
Q 016116 99 RRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (395)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~ 178 (395)
.+. .+-..++.....+..+|+|..++.... .|+|+++|..+|+++|.+.++..+. |....+|..|..++|.
T Consensus 263 ~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 333 (371)
T COG5076 263 ERE----ERESVLITNSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNY---YRPEETFVRDAKLFFD 333 (371)
T ss_pred ccc----cchhhcccccccccccccccccCCccc--ccchhhhhhcccccccchhhhhccc---CCCccccccccchhhh
Confidence 000 023334555577788999999999988 9999999999999999999999999 9999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 016116 179 NAMKYNDERDDVHVMAKSLLEKFEEKWL 206 (395)
Q Consensus 179 Na~~YN~~~S~v~~~A~~L~~~Fe~~~~ 206 (395)
||..||+.-..++..+..+..+|.....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (371)
T COG5076 334 NCVMYNGEVTDYYKNANVLEDFVIKKTR 361 (371)
T ss_pred cccccchhhhhhhhhccchhhhHhhhhh
Confidence 9999999999999999998888877654
No 52
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.88 E-value=7.1e-06 Score=81.90 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=73.4
Q ss_pred HHHHHcCCCCCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHH
Q 016116 112 FRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVH 191 (395)
Q Consensus 112 l~~l~~~~~a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~ 191 (395)
.+++........|..+|-... +|.|.-+|++|+|++|++.+..++. |.| -+|..|+.||+.||++||.+...+|
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~and---y~S-~~f~~D~kl~~l~amT~gehsk~yy 290 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSAND---YES-LSFTQDRKLIALKAVTNGEHSKSYY 290 (418)
T ss_pred HHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhh---hhh-hhhhcccchhhHHHHhcCCcchHHH
Confidence 345555566778888888777 9999999999999999999999999 999 9999999999999999999999999
Q ss_pred HHHHHHHH
Q 016116 192 VMAKSLLE 199 (395)
Q Consensus 192 ~~A~~L~~ 199 (395)
.+|..+..
T Consensus 291 elank~lh 298 (418)
T KOG1828|consen 291 ELANKQLH 298 (418)
T ss_pred HHHHhhhh
Confidence 99998766
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.01 E-value=0.0069 Score=52.74 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=57.3
Q ss_pred CCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhhCcCchHH
Q 016116 145 PMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 215 (395)
Q Consensus 145 PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~~~~~~~~ 215 (395)
|.||..|++||+.|. |+++.+|.+||-.|+.-++.-.+....+-.....+..+|...+.++++++..+
T Consensus 59 p~dL~~V~kkl~~G~---Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~ 126 (131)
T cd05493 59 PLDLEAVGKKLEAGF---YTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSE 126 (131)
T ss_pred cccHHHHHHHHhccc---eehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccccc
Confidence 899999999999999 99999999999999998886666555555556677788999999998877543
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=86.36 E-value=0.59 Score=51.70 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=52.4
Q ss_pred ccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 016116 142 IEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 204 (395)
Q Consensus 142 Ik~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~L~~~Fe~~ 204 (395)
-.-|..|..|..+|++.. |++.+.|..||..|.+||.+|.+-+--+...+..|...|..-
T Consensus 1050 fpvpls~evi~~rlEn~y---Yrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNY---YRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhh---hhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 345789999999999999 999999999999999999999998887777777777777654
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=85.75 E-value=0.52 Score=53.73 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=55.6
Q ss_pred CCCCCCCCCcc---ccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHH--HHhchhhhhcccCCCC
Q 016116 121 AWPFMHPVDVE---GLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYA--DVRLVFKNAMKYNDER 187 (395)
Q Consensus 121 a~~F~~PVd~~---~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~--Dv~LIf~Na~~YN~~~ 187 (395)
+..|-.|++.. .+.+++|..+|+.|||+...-.++..+. |.++.+|.. ++.|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~---~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHL---KLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHh---HHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 56677777632 2225699999999999999999999999 999999999 9999999999999965
No 56
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=67.84 E-value=0.67 Score=50.10 Aligned_cols=76 Identities=8% Similarity=-0.101 Sum_probs=69.3
Q ss_pred CCCCCCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHHHHHH
Q 016116 121 AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEK 200 (395)
Q Consensus 121 a~~F~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~L~~~ 200 (395)
...|+.-++... +|.||.+++-||.+....+++..+. |.....|..|+.++|.|+..|+.....++..+..|.+.
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~E---vfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQE---VFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhccc---ceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 566778777777 9999999999999999999999999 99999999999999999999999999999998888765
Q ss_pred H
Q 016116 201 F 201 (395)
Q Consensus 201 F 201 (395)
+
T Consensus 288 d 288 (629)
T KOG1827|consen 288 D 288 (629)
T ss_pred c
Confidence 4
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=66.34 E-value=3.5 Score=45.90 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=51.5
Q ss_pred CCCCCccccCCCchhhhccCCCChHHHHHHHhCCCCCCC--------------C----------CHHH------HHHHHh
Q 016116 125 MHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY--------------R----------NVRE------IYADVR 174 (395)
Q Consensus 125 ~~PVd~~~l~~PdYy~iIk~PMDL~tIk~kL~~~~~~~Y--------------~----------s~~e------f~~Dv~ 174 (395)
.-++|... +|-|..+..-|.+|+|++..|.+.. | . ++.+ ...-+.
T Consensus 87 v~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~---k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~ 161 (1113)
T KOG0644|consen 87 VPMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRA---KDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAP 161 (1113)
T ss_pred ccCcCCCC--CcceeeeecccchhcchhHHHHhhh---hhcccccccccccccccccCcccccceeccCCcchhhhhcCc
Confidence 34667666 8999999999999999999999877 5 2 3333 677788
Q ss_pred chhhhhcccCCCCCHHHHHHH
Q 016116 175 LVFKNAMKYNDERDDVHVMAK 195 (395)
Q Consensus 175 LIf~Na~~YN~~~S~v~~~A~ 195 (395)
+|-.||+.++.||+ +++-++
T Consensus 162 ~i~~at~~~akPgt-mvqkmk 181 (1113)
T KOG0644|consen 162 SIGCATFSIAKPGT-MVQKMK 181 (1113)
T ss_pred ccccceeeecCcHH-HHHHHH
Confidence 99999999999999 444443
No 58
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=66.16 E-value=16 Score=30.21 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHhchhhhhcccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 016116 160 GTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (395)
Q Consensus 160 ~~~Y~s~~ef~~Dv~LIf~Na~~YN~~~S~v~~~A~~L~~~Fe~~~~~~ 208 (395)
|+.|.|..-|...+..|-.....++..+..+..+|..+.+.|++-|...
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3459999999988888877777777778899999999999999999755
No 59
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=59.94 E-value=22 Score=28.70 Aligned_cols=48 Identities=29% Similarity=0.312 Sum_probs=32.4
Q ss_pred CCCCCcccccccCCCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016116 4 MSGLNQDLGNVGLGKAE-----GDTVEVEGLNKTIDDILQKVTQLEQKLNDVE 51 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~i~~k~~~le~~~~~~~ 51 (395)
|||-|....-..-.... -...|...+..+||+|-+-++.||++...+.
T Consensus 1 ms~~ngd~~~~~e~~~~~~~~e~~~~E~~~ins~LD~Lns~LD~LE~rnD~l~ 53 (83)
T PF03670_consen 1 MSGPNGDDGMSVEDGGEEEDDEFDEEEYAAINSMLDQLNSCLDHLEQRNDHLH 53 (83)
T ss_pred CCCCCCCCCCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 77777665432221222 1246778999999999999999999866554
No 60
>PF14933 CEP19: CEP19-like protein
Probab=47.42 E-value=69 Score=28.93 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=30.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhccCCCCCCC
Q 016116 311 VDLDMDAQSELTLWRLKVFVQESLKAASRSSGDMG 345 (395)
Q Consensus 311 vElDid~L~~~TL~~L~~yV~~~L~~~~~~~~~~~ 345 (395)
-+.|++.|++.+|.+.+.-+...++.-...++..|
T Consensus 106 ~~~dlNk~~~~eL~~~K~~Md~~F~~N~~~p~D~~ 140 (159)
T PF14933_consen 106 PEEDLNKLDDEELAKVKEIMDELFEKNRIKPGDPG 140 (159)
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 56799999999999999999999988777666654
No 61
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=42.91 E-value=35 Score=27.63 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHhhhcCCCHHHHHHHHHHhc-cCChHhHHHHHHHHHhcCCCCCCCCC--eEEEeCCCC-CHHHHHHHHHHHHHH
Q 016116 263 VIQKCRKMSTEEKKNLGTALT-RLSPEDLCKALEIVAENNPSFHATAQ--EVDLDMDAQ-SELTLWRLKVFVQES 333 (395)
Q Consensus 263 ~~~~~r~mt~eEK~~L~~~I~-~L~~e~L~~vi~II~~~~P~~~~~~~--evElDid~L-~~~TL~~L~~yV~~~ 333 (395)
+-++...+|.+|..+++...+ .+++++...|+.|+.....++.+.++ .+-..|... +|.|...+.......
T Consensus 8 Vn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 8 VNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445667899999999999876 67999999999999987766543221 222233444 666666666555443
No 62
>PHA01750 hypothetical protein
Probab=40.21 E-value=54 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.487 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016116 24 VEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (395)
Q Consensus 24 ~~~~~~~~~l~~i~~k~~~le~~~~~~~~ 52 (395)
.|++.|+.++.++.-+.+.+++++-++.+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68999999999999999999999887654
No 63
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.62 E-value=65 Score=26.51 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 016116 24 VEVEGLNKTIDDILQKVTQLEQKLNDVEQFYL 55 (395)
Q Consensus 24 ~~~~~~~~~l~~i~~k~~~le~~~~~~~~~~~ 55 (395)
.+++.+-++|++|..+|.+||..|..++.|..
T Consensus 59 ~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 59 EELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888899999999988877543
No 64
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=33.87 E-value=1.5e+02 Score=22.79 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHhc
Q 016116 288 EDLCKALEIVAENNPSFHATAQEVDLDMDAQSELTLWRLKVFVQESLKAA 337 (395)
Q Consensus 288 e~L~~vi~II~~~~P~~~~~~~evElDid~L~~~TL~~L~~yV~~~L~~~ 337 (395)
++...+++.+.+.. -|-+||+.|+.+..+++-.|+....-..
T Consensus 10 ~D~~~i~~~l~~g~--------~Vivnl~~l~~~~~~Ri~Dfl~G~~~al 51 (73)
T PF04472_consen 10 EDAREIVDALREGK--------IVIVNLENLDDEEAQRILDFLSGAVYAL 51 (73)
T ss_dssp GGHHHHHHHHHTT----------EEEE-TTS-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC--------EEEEECCCCCHHHHHHHHHHHhchheee
Confidence 56667777777643 4899999999999999999999875443
No 65
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=27.17 E-value=1.1e+02 Score=24.07 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016116 23 TVEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (395)
Q Consensus 23 ~~~~~~~~~~l~~i~~k~~~le~~~~~~~~ 52 (395)
..|.+..+.-|...+.+++.||.+|..++.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888899999999999999887763
No 66
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=24.47 E-value=1.4e+02 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016116 24 VEVEGLNKTIDDILQKVTQLEQKL 47 (395)
Q Consensus 24 ~~~~~~~~~l~~i~~k~~~le~~~ 47 (395)
+.++.|.+.|+++..+++.||.++
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567889999999999999998764
No 67
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.06 E-value=1.1e+02 Score=18.78 Aligned_cols=20 Identities=15% Similarity=0.541 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 016116 32 TIDDILQKVTQLEQKLNDVE 51 (395)
Q Consensus 32 ~l~~i~~k~~~le~~~~~~~ 51 (395)
+++..++++.+||.+++++.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777766553
No 68
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.58 E-value=65 Score=26.34 Aligned_cols=19 Identities=16% Similarity=0.648 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 016116 322 TLWRLKVFVQESLKAASRS 340 (395)
Q Consensus 322 TL~~L~~yV~~~L~~~~~~ 340 (395)
-.|.|+.|+.+.++.+|+-
T Consensus 53 ~vW~lRdyL~~~i~~~G~e 71 (89)
T PF10078_consen 53 DVWILRDYLNDKIKEQGKE 71 (89)
T ss_pred cchHHHHHHHHHHHHcCCC
Confidence 3499999999999999963
No 69
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.15 E-value=2.1e+02 Score=21.28 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 016116 24 VEVEGLNKTIDDILQKVTQLEQKLNDVEQFYL 55 (395)
Q Consensus 24 ~~~~~~~~~l~~i~~k~~~le~~~~~~~~~~~ 55 (395)
+.+..++.+.++|+..++.+++-+-++-..|+
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999988777765
Done!