BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016118
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
Linguale
Length = 250
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 40/264 (15%)
Query: 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLI 195
FI F++R YE A G SI L N QE+A +D G G +A+K +
Sbjct: 5 AFIQTDTFTLRGYECDAFGRXSIPALXNLXQESA-----NRNAIDYGIGIAD-LAQKGVG 58
Query: 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255
W + R + + +YP + D + + T+ + K + RD+ + A G L A S W++ +
Sbjct: 59 WXLXRFCLRIHQYPRYGDTIQLXTYPTTVDKYFIHRDFRVL-ATDGTLLADARSTWLVFS 117
Query: 256 KLTRRLSKMPDEVRQEIEPYFLNSDPV-------------VDEDSRKLPKLGDSTAD--- 299
R +PD +RQ P N DP+ + K ++G D
Sbjct: 118 XEKRSXVPLPDFIRQLSPP--ANVDPLPALPLKPDFQTASFATAASKSVQVGWLNIDQNQ 175
Query: 300 ------YVRRGLTSAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLG 353
YV+ L +I+++ ++A + L YR E L S+ +V++ D L
Sbjct: 176 HVNNVAYVQWLLEGVDSEIVQTREIAEIDLVYRTESHWHDWL-SVQSVTETDNSVL---- 230
Query: 354 SVECQHLLRLEEGAEVLRARTEWR 377
+ + E G +VL AR+ WR
Sbjct: 231 ----HRISQTESGKDVLLARSRWR 250
>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
Length = 262
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 10/148 (6%)
Query: 128 GIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATP 187
G + + ++ + I YE G A++ TL++ + + + DA T
Sbjct: 1 GXATLGANASLYSEQHRITYYECDRTGRATLTTLID------IAVLASEDQSDALGLTTE 54
Query: 188 AMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRA 247
+ + WVVT+ + + R P ++VV + SA R++ IR+A G+ L
Sbjct: 55 XVQSHGVGWVVTQYAIDITRXPRQDEVVTIAVRGSAYNPYFAYREFWIRDAD-GQQLAYI 113
Query: 248 TSLWVMMNKLTRRLSKMPDEVRQEIEPY 275
TS+WV ++ TRR+ K+ E+ + PY
Sbjct: 114 TSIWVXXSQTTRRIVKILPEL---VAPY 138
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 143 FSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQ 202
F + + +G + L NHL A H D GFG + + N WV++R+
Sbjct: 13 FVAEPFHVDFNGRLTXGVLGNHLLNCAGFHAS-----DRGFG-IATLNEDNYTWVLSRLA 66
Query: 203 VVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRR 260
+ +D P + +V+TWV + R++ + + K G+ + A S+W +N TR+
Sbjct: 67 IELDEXPYQYEKFSVQTWVENVYRLFTDRNFAVID-KDGKKIGYARSVWAXINLNTRK 123
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 162 MNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221
+ H +ET LNH + G + + K+ + + + +D T++DV +V W
Sbjct: 51 LQHFKETTLNHAILMGRVTFDGMGRRLLPKRETLILTRNPEEKIDGVATFHDVQSVLDWY 110
Query: 222 SASGKN 227
SA KN
Sbjct: 111 SAQEKN 116
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 482
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 232 DWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEV------RQEIEPYFLNSDPVVDE 285
+ +++ + GE + R T W M K+T + +E +I P L SD ++E
Sbjct: 236 ERIVKAMERGEDVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVL-SDEYLEE 294
Query: 286 DSRKLPKLGDSTADYVRR--GLTSAPQQIL-ESHQLASVTLEYRREC 329
++LP+L D A+ R GL ++L S +LA E+ EC
Sbjct: 295 VKKELPELPDEKAERFMREYGLPEYDAKVLTSSKELA----EFFEEC 337
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 162 MNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221
+ + ET++ + AG P MA++ L W + V VD ++D ++ +
Sbjct: 195 VQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTM-LYSDALDQRLAM 253
Query: 222 SASGKNGMR 230
SGKNG R
Sbjct: 254 FKSGKNGPR 262
>pdb|2G33|C Chain C, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|D Chain D, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|B Chain B, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|A Chain A, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G34|C Chain C, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|D Chain D, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|B Chain B, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|A Chain A, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
Length = 150
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 211 WNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLT 258
W D++ + TWV + ++ RD ++ T L LW ++ LT
Sbjct: 62 WGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISALT 109
>pdb|2QIJ|C Chain C, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|D Chain D, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|B Chain B, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data.
pdb|2QIJ|A Chain A, Hepatitis B Capsid Protein With An N-Terminal Extension
Modelled Into 8.9 A Data
Length = 157
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 210 TWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLT 258
W D++ + TWV + ++ RD ++ T L LW ++ LT
Sbjct: 70 CWGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISCLT 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,550,136
Number of Sequences: 62578
Number of extensions: 401555
Number of successful extensions: 845
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 22
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)