Query 016118
Match_columns 395
No_of_seqs 362 out of 1532
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02370 acyl-ACP thioesterase 100.0 1E-116 3E-121 892.8 43.9 395 1-395 1-419 (419)
2 PF12590 Acyl-thio_N: Acyl-ATP 100.0 9.4E-66 2E-70 431.5 8.9 124 1-125 1-129 (129)
3 PF01643 Acyl-ACP_TE: Acyl-ACP 100.0 2.3E-49 4.9E-54 382.2 24.6 238 136-378 1-261 (261)
4 COG3884 FatA Acyl-ACP thioeste 100.0 7.7E-31 1.7E-35 243.6 15.3 224 137-379 2-242 (250)
5 PRK10800 acyl-CoA thioesterase 99.9 3.6E-26 7.9E-31 197.4 18.5 128 138-272 2-129 (130)
6 TIGR02799 thio_ybgC tol-pal sy 99.9 2.2E-24 4.7E-29 184.1 16.5 124 139-270 1-125 (126)
7 TIGR00051 acyl-CoA thioester h 99.9 1.1E-23 2.3E-28 176.6 15.9 117 142-265 1-117 (117)
8 COG0824 FcbC Predicted thioest 99.9 6.4E-23 1.4E-27 180.2 17.8 132 136-275 3-134 (137)
9 PRK07531 bifunctional 3-hydrox 99.8 2.1E-20 4.6E-25 195.7 17.8 135 136-278 343-477 (495)
10 PF13279 4HBT_2: Thioesterase- 99.8 1.7E-19 3.7E-24 153.0 17.2 119 145-272 1-121 (121)
11 cd00586 4HBT 4-hydroxybenzoyl- 99.7 1.1E-16 2.3E-21 130.1 15.3 110 139-255 1-110 (110)
12 cd03442 BFIT_BACH Brown fat-in 99.3 2.7E-10 6E-15 95.8 16.2 114 136-265 5-123 (123)
13 cd03440 hot_dog The hotdog fol 99.0 2.8E-08 6.1E-13 75.4 13.7 98 140-251 2-99 (100)
14 PF03061 4HBT: Thioesterase su 98.8 1.5E-07 3.3E-12 72.9 11.6 79 153-245 1-79 (79)
15 cd03443 PaaI_thioesterase PaaI 98.6 2.2E-06 4.7E-11 70.9 14.6 102 136-252 11-112 (113)
16 PF01643 Acyl-ACP_TE: Acyl-ACP 98.6 3.8E-07 8.3E-12 88.3 10.4 96 136-251 163-259 (261)
17 PRK10800 acyl-CoA thioesterase 98.4 2.1E-06 4.4E-11 73.9 10.2 90 288-383 9-115 (130)
18 TIGR00051 acyl-CoA thioester h 98.3 3.3E-06 7.1E-11 70.3 9.5 89 288-382 4-109 (117)
19 PLN02370 acyl-ACP thioesterase 98.3 4E-06 8.7E-11 86.4 10.9 94 140-253 303-402 (419)
20 COG0824 FcbC Predicted thioest 98.2 8.2E-06 1.8E-10 71.7 9.9 90 288-384 12-118 (137)
21 PRK10694 acyl-CoA esterase; Pr 98.2 9.5E-05 2.1E-09 64.8 15.2 111 140-266 13-131 (133)
22 TIGR02799 thio_ybgC tol-pal sy 98.1 2.9E-05 6.4E-10 65.8 9.7 89 288-383 7-113 (126)
23 cd00586 4HBT 4-hydroxybenzoyl- 98.0 3.1E-05 6.6E-10 62.3 8.8 86 289-380 8-110 (110)
24 COG1607 Acyl-CoA hydrolase [Li 97.7 0.0019 4.2E-08 58.2 15.2 113 141-268 16-132 (157)
25 PF13279 4HBT_2: Thioesterase- 97.7 0.00022 4.8E-09 60.1 8.4 89 289-383 2-108 (121)
26 TIGR00369 unchar_dom_1 unchara 97.6 0.0033 7.3E-08 53.0 14.3 98 140-252 19-116 (117)
27 PRK07531 bifunctional 3-hydrox 97.5 0.00043 9.2E-09 73.2 9.9 89 289-383 353-457 (495)
28 COG3884 FatA Acyl-ACP thioeste 97.5 0.00037 8E-09 66.1 8.0 88 138-251 152-239 (250)
29 TIGR02286 PaaD phenylacetic ac 97.2 0.014 3E-07 49.1 14.1 97 140-253 17-113 (114)
30 PLN02647 acyl-CoA thioesterase 97.0 0.013 2.8E-07 61.1 13.7 117 143-266 98-221 (437)
31 PRK10293 acyl-CoA esterase; Pr 96.7 0.077 1.7E-06 46.6 14.4 101 139-254 36-136 (136)
32 COG5496 Predicted thioesterase 96.7 0.09 1.9E-06 45.7 14.3 110 134-258 2-118 (130)
33 PRK10254 thioesterase; Provisi 96.4 0.22 4.7E-06 43.9 15.4 101 139-254 36-136 (137)
34 PRK11688 hypothetical protein; 96.3 0.14 3.1E-06 45.5 14.1 111 140-253 40-153 (154)
35 PLN02864 enoyl-CoA hydratase 96.1 0.3 6.6E-06 48.7 16.5 60 197-256 95-158 (310)
36 cd03440 hot_dog The hotdog fol 96.0 0.069 1.5E-06 39.6 9.0 75 296-376 19-99 (100)
37 KOG3328 HGG motif-containing t 95.9 0.11 2.4E-06 46.3 10.6 101 139-253 39-139 (148)
38 COG2050 PaaI HGG motif-contain 95.8 0.38 8.3E-06 42.0 14.2 104 139-256 36-139 (141)
39 cd03449 R_hydratase (R)-hydrat 95.8 0.13 2.9E-06 43.2 10.6 56 195-251 69-126 (128)
40 PF03061 4HBT: Thioesterase su 95.6 0.046 9.9E-07 41.8 6.6 69 296-370 5-79 (79)
41 PLN02322 acyl-CoA thioesterase 94.7 1.9 4.1E-05 38.9 15.0 103 139-255 28-135 (154)
42 cd03455 SAV4209 SAV4209 is a S 94.0 0.43 9.2E-06 40.5 9.1 55 196-251 67-122 (123)
43 cd01288 FabZ FabZ is a 17kD be 94.0 1.2 2.6E-05 37.6 11.9 81 161-253 50-130 (131)
44 cd00556 Thioesterase_II Thioes 93.7 0.39 8.5E-06 38.3 7.9 58 194-252 41-98 (99)
45 PRK13691 (3R)-hydroxyacyl-ACP 93.7 0.82 1.8E-05 41.5 10.7 69 197-266 85-157 (166)
46 COG4109 Predicted transcriptio 93.5 0.57 1.2E-05 47.5 9.9 100 136-252 330-429 (432)
47 PLN02647 acyl-CoA thioesterase 93.0 3.6 7.9E-05 43.1 15.6 117 137-267 289-415 (437)
48 cd03442 BFIT_BACH Brown fat-in 93.0 0.96 2.1E-05 37.3 9.4 86 289-380 15-114 (123)
49 PF14539 DUF4442: Domain of un 93.0 1.7 3.7E-05 37.7 11.2 99 138-252 30-131 (132)
50 cd03441 R_hydratase_like (R)-h 92.8 1.1 2.5E-05 37.2 9.6 56 194-250 66-125 (127)
51 cd03447 FAS_MaoC FAS_MaoC, the 92.4 1.6 3.4E-05 37.7 10.1 53 197-250 69-122 (126)
52 PRK13692 (3R)-hydroxyacyl-ACP 92.3 1.4 3.1E-05 39.6 10.1 60 199-259 87-150 (159)
53 PRK00006 fabZ (3R)-hydroxymyri 92.3 7.2 0.00016 34.0 16.0 59 195-255 87-146 (147)
54 KOG4366 Predicted thioesterase 92.1 0.055 1.2E-06 49.9 0.7 125 145-285 57-184 (213)
55 cd03454 YdeM YdeM is a Bacillu 91.8 0.91 2E-05 39.2 8.0 51 201-252 81-138 (140)
56 cd03446 MaoC_like MoaC_like 91.8 1 2.2E-05 38.6 8.4 51 201-252 83-139 (140)
57 cd03453 SAV4209_like SAV4209_l 91.8 1.4 3E-05 37.6 9.0 52 198-250 70-125 (127)
58 cd03443 PaaI_thioesterase PaaI 91.5 1.5 3.3E-05 35.6 8.8 55 316-377 58-112 (113)
59 TIGR01750 fabZ beta-hydroxyacy 91.2 9.1 0.0002 32.9 13.9 56 195-252 83-139 (140)
60 cd03451 FkbR2 FkbR2 is a Strep 90.8 1.4 3E-05 38.2 8.2 52 201-253 84-142 (146)
61 cd00493 FabA_FabZ FabA/Z, beta 89.4 11 0.00025 31.4 14.6 85 154-248 42-126 (131)
62 PRK04424 fatty acid biosynthes 89.4 4.1 8.9E-05 37.6 10.5 59 193-253 123-181 (185)
63 PF13452 MaoC_dehydrat_N: N-te 89.4 1.6 3.4E-05 37.2 7.3 51 195-246 74-131 (132)
64 TIGR02286 PaaD phenylacetic ac 88.5 4.5 9.7E-05 33.7 9.3 54 318-378 59-113 (114)
65 cd03452 MaoC_C MaoC_C The C-t 87.7 4.1 8.9E-05 35.5 9.0 51 201-252 81-137 (142)
66 PRK08190 bifunctional enoyl-Co 87.2 4.6 0.0001 42.6 10.5 66 195-261 82-149 (466)
67 PF13622 4HBT_3: Thioesterase- 87.0 5 0.00011 38.0 9.8 58 196-256 34-91 (255)
68 cd03449 R_hydratase (R)-hydrat 86.7 5 0.00011 33.4 8.6 54 318-375 72-125 (128)
69 cd03445 Thioesterase_II_repeat 86.5 6.6 0.00014 32.0 8.9 54 196-251 39-92 (94)
70 TIGR02447 yiiD_Cterm thioester 86.3 22 0.00047 31.0 13.8 100 140-254 25-137 (138)
71 TIGR00369 unchar_dom_1 unchara 81.7 11 0.00024 31.4 8.5 53 317-377 63-116 (117)
72 cd03446 MaoC_like MoaC_like 81.2 9.1 0.0002 32.7 8.1 55 322-376 84-138 (140)
73 cd03453 SAV4209_like SAV4209_l 80.0 11 0.00024 32.0 8.1 59 315-375 67-125 (127)
74 PF07977 FabA: FabA-like domai 78.8 31 0.00068 29.6 10.7 102 139-248 27-138 (138)
75 cd03455 SAV4209 SAV4209 is a S 78.7 15 0.00033 30.8 8.5 56 315-375 66-121 (123)
76 cd03441 R_hydratase_like (R)-h 73.8 30 0.00065 28.5 9.0 58 315-374 67-124 (127)
77 cd03447 FAS_MaoC FAS_MaoC, the 72.9 27 0.00059 29.9 8.6 53 317-375 69-122 (126)
78 PRK11688 hypothetical protein; 71.0 29 0.00062 30.7 8.6 52 318-377 100-152 (154)
79 cd03452 MaoC_C MaoC_C The C-t 70.7 15 0.00034 31.9 6.7 56 322-377 82-137 (142)
80 TIGR00189 tesB acyl-CoA thioes 69.4 21 0.00045 34.3 7.9 55 196-252 44-98 (271)
81 COG2030 MaoC Acyl dehydratase 67.9 30 0.00065 30.9 8.1 58 195-254 93-155 (159)
82 PRK13692 (3R)-hydroxyacyl-ACP 67.1 28 0.00061 31.2 7.8 55 321-377 89-143 (159)
83 PRK13188 bifunctional UDP-3-O- 66.3 63 0.0014 34.3 11.2 58 196-255 402-461 (464)
84 cd03451 FkbR2 FkbR2 is a Strep 66.3 29 0.00063 29.7 7.5 56 322-377 85-141 (146)
85 PRK13691 (3R)-hydroxyacyl-ACP 65.1 42 0.0009 30.4 8.5 60 321-382 89-148 (166)
86 PRK00006 fabZ (3R)-hydroxymyri 63.5 42 0.00092 29.0 8.0 56 318-380 90-146 (147)
87 PF14539 DUF4442: Domain of un 61.4 22 0.00049 30.7 5.8 55 318-377 77-131 (132)
88 COG0764 FabA 3-hydroxymyristoy 61.0 1E+02 0.0023 27.5 10.1 62 194-256 85-146 (147)
89 cd01287 FabA FabA, beta-hydrox 60.6 1.2E+02 0.0027 26.9 11.9 87 159-254 55-147 (150)
90 PRK10293 acyl-CoA esterase; Pr 59.2 76 0.0016 27.7 8.8 53 318-378 82-135 (136)
91 cd03448 HDE_HSD HDE_HSD The R 58.8 55 0.0012 27.9 7.7 48 196-248 70-117 (122)
92 cd01289 FabA_like Domain of un 58.4 1.2E+02 0.0027 26.2 12.3 87 154-250 45-133 (138)
93 cd03444 Thioesterase_II_repeat 57.1 69 0.0015 26.4 7.8 56 196-252 48-103 (104)
94 PF01575 MaoC_dehydratas: MaoC 57.1 23 0.00051 29.7 5.1 33 195-227 75-107 (122)
95 cd03454 YdeM YdeM is a Bacillu 56.7 51 0.0011 28.1 7.2 55 321-375 81-136 (140)
96 PRK10694 acyl-CoA esterase; Pr 56.4 87 0.0019 27.2 8.7 60 317-382 55-123 (133)
97 PRK10526 acyl-CoA thioesterase 55.5 56 0.0012 32.1 8.2 55 196-252 55-109 (286)
98 PF03756 AfsA: A-factor biosyn 55.5 1.3E+02 0.0028 25.5 12.9 88 153-253 40-132 (132)
99 cd01288 FabZ FabZ is a 17kD be 53.0 68 0.0015 26.7 7.3 51 319-376 78-128 (131)
100 PRK04424 fatty acid biosynthes 50.4 69 0.0015 29.4 7.5 53 319-378 129-181 (185)
101 TIGR01750 fabZ beta-hydroxyacy 49.1 90 0.002 26.6 7.6 52 318-376 86-138 (140)
102 PRK08190 bifunctional enoyl-Co 47.8 1E+02 0.0022 32.5 9.2 57 318-378 85-141 (466)
103 cd03450 NodN NodN (nodulation 45.5 2E+02 0.0044 25.4 9.4 29 196-224 85-113 (149)
104 COG2050 PaaI HGG motif-contain 44.3 1.5E+02 0.0032 25.6 8.2 54 319-380 83-138 (141)
105 TIGR02278 PaaN-DH phenylacetic 43.9 68 0.0015 35.5 7.3 51 201-252 604-660 (663)
106 PRK11563 bifunctional aldehyde 43.8 72 0.0016 35.3 7.6 49 202-251 617-671 (675)
107 PF13452 MaoC_dehydrat_N: N-te 41.9 66 0.0014 27.1 5.5 53 319-371 78-131 (132)
108 PF13622 4HBT_3: Thioesterase- 38.6 2.6E+02 0.0056 26.2 9.6 54 198-252 200-254 (255)
109 PRK10254 thioesterase; Provisi 37.2 2.1E+02 0.0045 25.0 8.1 53 317-377 81-134 (137)
110 PRK13693 (3R)-hydroxyacyl-ACP 36.8 2.9E+02 0.0062 24.1 9.4 51 199-250 81-138 (142)
111 PLN02864 enoyl-CoA hydratase 36.6 2E+02 0.0043 28.7 8.8 50 197-251 254-303 (310)
112 PF02551 Acyl_CoA_thio: Acyl-C 36.0 2.4E+02 0.0051 24.9 8.0 53 198-251 77-130 (131)
113 TIGR00189 tesB acyl-CoA thioes 36.0 2.1E+02 0.0045 27.3 8.6 55 197-252 215-269 (271)
114 cd00493 FabA_FabZ FabA/Z, beta 33.8 2.1E+02 0.0046 23.4 7.4 47 321-374 81-127 (131)
115 PLN02868 acyl-CoA thioesterase 31.5 1.6E+02 0.0034 30.4 7.3 56 196-253 181-236 (413)
116 COG0764 FabA 3-hydroxymyristoy 30.0 2.8E+02 0.0062 24.7 7.8 56 318-379 89-144 (147)
117 PLN02322 acyl-CoA thioesterase 29.4 3.4E+02 0.0074 24.3 8.2 55 317-378 72-133 (154)
118 COG1946 TesB Acyl-CoA thioeste 28.2 6.2E+02 0.013 25.3 10.8 136 99-254 147-283 (289)
119 cd03448 HDE_HSD HDE_HSD The R 28.1 2.5E+02 0.0055 23.8 7.0 46 317-372 71-116 (122)
120 TIGR02278 PaaN-DH phenylacetic 25.7 1.9E+02 0.0042 32.0 7.2 55 321-375 604-658 (663)
121 PF14765 PS-DH: Polyketide syn 24.9 4E+02 0.0087 25.2 8.5 57 193-250 226-284 (295)
122 PRK11563 bifunctional aldehyde 24.4 1.8E+02 0.0039 32.2 6.6 55 322-376 617-671 (675)
123 PF07977 FabA: FabA-like domai 24.0 2.4E+02 0.0051 24.1 6.1 52 318-373 86-138 (138)
124 KOG3328 HGG motif-containing t 23.9 2.4E+02 0.0051 25.4 6.0 52 317-375 83-136 (148)
125 PF11456 DUF3019: Protein of u 22.5 2.3E+02 0.0049 23.7 5.4 35 231-265 65-99 (102)
126 COG2030 MaoC Acyl dehydratase 21.5 4E+02 0.0088 23.6 7.2 60 317-378 95-154 (159)
127 cd00556 Thioesterase_II Thioes 21.3 3.9E+02 0.0084 20.6 8.2 53 316-375 43-96 (99)
128 PRK05174 3-hydroxydecanoyl-(ac 20.1 6.6E+02 0.014 22.8 12.8 79 159-252 81-163 (172)
No 1
>PLN02370 acyl-ACP thioesterase
Probab=100.00 E-value=1.3e-116 Score=892.81 Aligned_cols=395 Identities=76% Similarity=1.179 Sum_probs=362.4
Q ss_pred CccccccccccccCCCCCCCcccccCCCCCCCCCccccCC-CCceeeeccccCCCcccCccceecCCcccccCCCCCCCC
Q 016118 1 MVATAAASAFFPVSSPSGDSVAKTKNLGSANLGGIKSKSS-SGSLQVKANAQAPSKINGTSVGLTTPAESLKNGDISTSS 79 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (395)
|||++|+|||||||+|++++++.++|.+++|++|||+|++ +|||||||||||+|||||++|+|+++++++|++|++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (419)
T PLN02370 1 MVATAATSSFFPVPSPSGDAKAKKFGSGSASLGGIKSKSASSGALQVKANAQAPPKINGSPVGLTGSVEIVKTDEDVVSS 80 (419)
T ss_pred CchhhhhcccccCCCCCCCcccccCCCCcccccccccCCCCCCceeeeccccCCCcccCceeecccccccccccccCCCC
Confidence 9999999999999999999987788889999999999998 899999999999999999999999999999999997669
Q ss_pred CCcccccccCCChHHHHHHHHHHHHHhhhhhccccCCCCCCCccccccccCccccCCeeEEEEEEeecccCCCCCCcCHH
Q 016118 80 PPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIE 159 (395)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~f~~~~~VR~~D~D~~G~v~~~ 159 (395)
|||||||||||||||||||||||||||||||||||||++|||||+|||++|++++|+++|+++|+|||||||.+|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~f~Ir~yEvD~~g~lsl~ 160 (419)
T PLN02370 81 PAPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLIDPFGIGRIVQDGLVFRQNFSIRSYEIGADRTASIE 160 (419)
T ss_pred CCCcchhhcCCcHHHHHHHHHHHHHhhhhhhhhhcccCCCCcccccccccCceeccCcEEEEEEEEeeEEECCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECC
Q 016118 160 TLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAK 239 (395)
Q Consensus 160 ~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~ 239 (395)
.++|||||+|.+|++.+|+.++||+...+|.+.|++|||++++|+|.|+|+|||+|+|+||+.++++++++|+|.|+|.+
T Consensus 161 ~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~ 240 (419)
T PLN02370 161 TLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCK 240 (419)
T ss_pred HHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECC
Confidence 99999999999999999988888887678999999999999999999999999999999999999999999999999965
Q ss_pred CCcEEEEEEEEEEEEEcCCCcccCCCHHHHHhhccccCCCCCCC----------Cc---------cCCCCCCCCC----C
Q 016118 240 TGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVV----------DE---------DSRKLPKLGD----S 296 (395)
Q Consensus 240 ~Gevia~A~S~wV~iD~~tRRpvrIP~ev~~~i~~y~~~~~p~i----------~~---------~~~k~sdlD~----N 296 (395)
+|+++++|+|+||+||++||||+|||+++++.+.+|..+..+.+ +. ...|++|||. |
T Consensus 241 ~Ge~la~A~SvWV~mD~~TRRpvRIP~Evr~~i~~y~~~~~~~i~~~~~kl~~l~~~~~~~~~~~~~VRysDLD~NgHVN 320 (419)
T PLN02370 241 TGETLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFLNSDPVVNEDSRKLPKLDDKTADYIRKGLTPRWSDLDVNQHVN 320 (419)
T ss_pred CCeEEEEEEEEEEEEECCCCcccCCCHHHHHhhhhcccccccccccccccCCccccccccceeeeeeecHHHCcccCccc
Confidence 79999999999999999999999999999888888865432222 11 1246889997 9
Q ss_pred chhHHhhhccccChhhhccCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEE
Q 016118 297 TADYVRRGLTSAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEW 376 (395)
Q Consensus 297 Na~Yi~w~ld~lp~e~l~~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W 376 (395)
|++|++|++|++|.|++++|++++|+|+|++||++||+|++++...+.+.+...+++.+.++|+++.++|+++|+++|.|
T Consensus 321 NvkYi~Wild~lP~e~l~~~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~~~~~h~~~~~dG~e~a~a~t~W 400 (419)
T PLN02370 321 NVKYIGWILESAPPPIMESHELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGDVECQHLLRLEDGAEIVRGRTEW 400 (419)
T ss_pred cHHHHHHHHhhCchhhhhcceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCCcceEEEEEEcCCCeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999987643221111123335688888888999999999999
Q ss_pred EEcCCCCCCCcCCcCCCCC
Q 016118 377 RPKDAHNFGNVGPIPAEST 395 (395)
Q Consensus 377 ~~k~~~~~~~~~~~~~~~~ 395 (395)
++|.++|+|++|+|||+++
T Consensus 401 r~~~~~~~~~~~~~~~~~~ 419 (419)
T PLN02370 401 RPKHATNFGIMGQIPAESA 419 (419)
T ss_pred EECCccCCCccccccCCCC
Confidence 9999999999999999975
No 2
>PF12590 Acyl-thio_N: Acyl-ATP thioesterase; InterPro: IPR021113 This entry represents the N-terminal domain of acyl-ATP thioesterases from bacteria and eukaryotes. These proteins are typically between 120 and 131 amino acids in length. The plant acyl-acyl carrier protein (ACP) thioesterases (TEs) play an essential role in chain termination during de novo fatty acid synthesis [].; GO: 0016790 thiolester hydrolase activity
Probab=100.00 E-value=9.4e-66 Score=431.54 Aligned_cols=124 Identities=73% Similarity=1.036 Sum_probs=117.6
Q ss_pred CccccccccccccCCCCCCCcc--cccCC--CCCCCCCccccCC-CCceeeeccccCCCcccCccceecCCcccccCCCC
Q 016118 1 MVATAAASAFFPVSSPSGDSVA--KTKNL--GSANLGGIKSKSS-SGSLQVKANAQAPSKINGTSVGLTTPAESLKNGDI 75 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (395)
|||++|+|||||||++++++++ +++|+ +++|+||||+|++ +|||||||||||+|||||++|+|+++++.+|++|+
T Consensus 1 MvAtaAaSaFFpvps~~~~~~~~s~~~G~~p~sl~~rgik~k~~~sg~~qvKanaqA~pKiNG~~v~l~~~~~~~~~~~~ 80 (129)
T PF12590_consen 1 MVATAAASAFFPVPSPSPSPKASSGKLGNGPDSLDVRGIKAKSASSGGLQVKANAQAPPKINGSKVGLKTGSEGTKEDDS 80 (129)
T ss_pred ChhhhhhhhccCCCCCCCCCccccccCCCCCCcccccccccCcCCCCCeeeecCCcCCCcccCccccccccccccccccc
Confidence 9999999999999999999988 88888 7888889999999 99999999999999999999999998888877765
Q ss_pred CCCCCCcccccccCCChHHHHHHHHHHHHHhhhhhccccCCCCCCCcccc
Q 016118 76 STSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLVD 125 (395)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 125 (395)
++||||||||||||||||||||||||||||||||||||||+||||||+|
T Consensus 81 -~~s~~pRTFiNQLPDWSMLLAAITTIFlAAEKQW~mLDwKpkRPDML~D 129 (129)
T PF12590_consen 81 -SSSPAPRTFINQLPDWSMLLAAITTIFLAAEKQWTMLDWKPKRPDMLVD 129 (129)
T ss_pred -CCCCCchhHhhhCccHHHHHHHHHHHHHHhhhhhhhhcccCCCcccccC
Confidence 7899999999999999999999999999999999999999999999997
No 3
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=100.00 E-value=2.3e-49 Score=382.25 Aligned_cols=238 Identities=33% Similarity=0.629 Sum_probs=176.5
Q ss_pred CeeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEE
Q 016118 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (395)
Q Consensus 136 ~~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V 215 (395)
|.+|+++++|+++|||.+|+++++.+++|||++|..|+..+|++.++||.+++|.+.|++|||+|++|++.|+|++||+|
T Consensus 1 g~~y~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i 80 (261)
T PF01643_consen 1 GLVYEKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKI 80 (261)
T ss_dssp ---EEEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EE
T ss_pred CceEEEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEE
Confidence 57899999999999999999999999999999999999999975443333344899999999999999999999999999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCCHHHHHhhccccCC--------CCCCC--Cc
Q 016118 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLN--------SDPVV--DE 285 (395)
Q Consensus 216 ~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP~ev~~~i~~y~~~--------~~p~i--~~ 285 (395)
+|+||+.+.+++++.|+|.|+|.++|+++++|+|.||+||++||||+|||+++.+.+.++..+ ..+.+ ..
T Consensus 81 ~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~WvliD~~trr~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (261)
T PF01643_consen 81 TIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWVLIDLETRRPVRIPEEIIEEYGPFFPDELPEEDIRKLPKIPKNP 160 (261)
T ss_dssp EEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEEEEETTT-SEE---GGCTCCGGGGB----T-EESSS--------
T ss_pred EEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEhhhCCcccCCHHHHhhhhhhcccccccccccccccccccC
Confidence 999999999999999999999933899999999999999999999999999887655311111 11111 00
Q ss_pred ---------cCCCCCCCCC----CchhHHhhhccccChhhhccCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCC
Q 016118 286 ---------DSRKLPKLGD----STADYVRRGLTSAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNL 352 (395)
Q Consensus 286 ---------~~~k~sdlD~----NNa~Yi~w~ld~lp~e~l~~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~ 352 (395)
-..+++|||. ||++|++|++|++|.+++++|.+++++|+|++||++||+|.+++.+... .++
T Consensus 161 ~~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~-----~~~ 235 (261)
T PF01643_consen 161 PEEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLEKYQIKSIDINYKKEIRYGDTITSYTEVEKD-----EEE 235 (261)
T ss_dssp --TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHCCEEEEEEEEEE-S--BTT-EEEEEEEEEEE-----CCT
T ss_pred ChhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhccCCcEEEEEEEccccCCCCEEEEEEEEccc-----ccC
Confidence 1247999998 9999999999999999999999999999999999999999999886431 123
Q ss_pred CceEEEEEEEcCCCcEEEEEEEEEEE
Q 016118 353 GSVECQHLLRLEEGAEVLRARTEWRP 378 (395)
Q Consensus 353 ~~~~~~H~ir~edG~ei~rart~W~~ 378 (395)
..+.+.|.|+.++|+++|+++|+|++
T Consensus 236 ~~~~~~h~i~~~~g~~~~~~~~~W~~ 261 (261)
T PF01643_consen 236 DGLSTLHEIRNEDGEEVARARTEWQK 261 (261)
T ss_dssp TEEEEEEEEECT-TCEEEEEEEEEE-
T ss_pred CceEEEEEEEcCCCceEEEEEEEEcC
Confidence 56789999999889999999999986
No 4
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=99.97 E-value=7.7e-31 Score=243.55 Aligned_cols=224 Identities=18% Similarity=0.258 Sum_probs=190.5
Q ss_pred eeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEE
Q 016118 137 FIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVN 216 (395)
Q Consensus 137 ~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~ 216 (395)
.++.+.+.|.+++.|+.|++..+..+.+..+++..+...+|.+. ...+.+.++.|+|.++.|++.|||.++|.|+
T Consensus 2 ~~~k~~~~vP~~~~d~~g~i~~~~~l~l~~~i~~~Qsi~lg~~~-----~~~lee~~l~WiV~~~~i~~ir~pef~e~it 76 (250)
T COG3884 2 SVDKQNMPVPFYWPDAVGDIDITSRLRLDLQIRGIQSIGLGQLD-----VAGLEEYHLLWIVRRTEIDVIRPPEFGEMIT 76 (250)
T ss_pred cchhhcCCCccchhhhcCCcchhhhhhhhhhhcceeecccchhh-----hhhHhhcCceEEEEEEEEEEeeccccCCcce
Confidence 35677889999999999999999999999999988887766322 1357899999999999999999999999999
Q ss_pred EEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCCHHHHHhhccccCCC---CC-----CCCc---
Q 016118 217 VETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNS---DP-----VVDE--- 285 (395)
Q Consensus 217 I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP~ev~~~i~~y~~~~---~p-----~i~~--- 285 (395)
|+||+.++++++++|+|.+.+ .|+.++++.+.|++||.+||||.++++++.+.+..-..++ .+ .++.
T Consensus 77 i~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a~wilmn~dTrkp~ri~~d~la~~~~t~~~k~~r~~~~l~~~~e~s~~ 154 (250)
T COG3884 77 IETWCSSISNFFCYRRFRLDG--RGGGLIEIEAFWILMNRDTRKPARITDDLLAPFNLTTEKKRLRWPKYLSSRLEASEI 154 (250)
T ss_pred EEEeeccccceEEEEEEEEec--CCCcEEEEEEEEEEEccccccceeccHHHhhhhcccchhheeccccccCcccccccc
Confidence 999999999999999999998 5889999999999999999999999999976554222111 11 1111
Q ss_pred --cCCCCCCCCC----CchhHHhhhccccChhhhccCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEE
Q 016118 286 --DSRKLPKLGD----STADYVRRGLTSAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQH 359 (395)
Q Consensus 286 --~~~k~sdlD~----NNa~Yi~w~ld~lp~e~l~~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H 359 (395)
-..|+.|||. ||++|++|++|.++.+++..|.+.+++|+|++|+.+|++|.+.+.+.+. ...|
T Consensus 155 ~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~p~r~~l~y~keva~G~~iti~~e~~~~-----------~s~~ 223 (250)
T COG3884 155 HDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGPLRLTLEYVKEVAPGEKITIVYEVHPL-----------ESKH 223 (250)
T ss_pred ccceeEEEeeccccccccceehHHHHHHHhhhhHhhcccceeEEEEEcccCCCCeEEEEEEEccc-----------Ccee
Confidence 1358899998 9999999999999999999999999999999999999999999988652 2356
Q ss_pred EEEcCCCcEEEEEEEEEEEc
Q 016118 360 LLRLEEGAEVLRARTEWRPK 379 (395)
Q Consensus 360 ~ir~edG~ei~rart~W~~k 379 (395)
.+.. ||+..+.+-++|...
T Consensus 224 ~f~~-d~~v~~lt~i~~d~i 242 (250)
T COG3884 224 QFTS-DGQVNALTYIVGDEI 242 (250)
T ss_pred eecC-CcceEEEEEEEehhh
Confidence 5543 799999999999864
No 5
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.94 E-value=3.6e-26 Score=197.35 Aligned_cols=128 Identities=17% Similarity=0.240 Sum_probs=118.6
Q ss_pred eEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEE
Q 016118 138 IFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (395)
Q Consensus 138 ~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I 217 (395)
+|..+++|||+|||++|||++++|++|||+|+.+++..+|+ +. ..+.+.|.+|++++++++|.+|+++||+|+|
T Consensus 2 ~f~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~-----~~-~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v 75 (130)
T PRK10800 2 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHF-----SQ-QALLAERVAFVVRKMTVEYYAPARLDDMLEV 75 (130)
T ss_pred ceEEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCC-----CH-HHHHhCCCEEEEEEEEEEEcCcccCCCEEEE
Confidence 57789999999999999999999999999999999999876 32 3466789999999999999999999999999
Q ss_pred EEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCCHHHHHhh
Q 016118 218 ETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEI 272 (395)
Q Consensus 218 ~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP~ev~~~i 272 (395)
+||+.++++.++...|++++. +|+++++|.++||++|.++|||++||+++++.+
T Consensus 76 ~t~v~~~~~~s~~~~~~i~~~-~g~~~a~~~~~~v~~d~~~~r~~~iP~~l~~~~ 129 (130)
T PRK10800 76 QSEITSMRGTSLTFTQRIVNA-EGTLLNEAEVLIVCVDPLKMKPRALPKSIVAEF 129 (130)
T ss_pred EEEEEeeCcEEEEEEEEEEcC-CCeEEEEEEEEEEEEECCCCcCcCCCHHHHHhh
Confidence 999999999988888999985 899999999999999999999999999998754
No 6
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.92 E-value=2.2e-24 Score=184.10 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=114.7
Q ss_pred EEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHH-hhCCceEEeEEeEEEEeecCCCCCEEEE
Q 016118 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAM-AKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (395)
Q Consensus 139 f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l-~~~gl~WVV~r~~Ie~~r~P~~gD~V~I 217 (395)
|+.+++|||+|||++|||+++.|++||++|+..++.++|+. . ..+ .+.|.+||+++++|+|.+|+++||+|.|
T Consensus 1 f~~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~-----~-~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v 74 (126)
T TIGR02799 1 FRWPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFE-----Q-SALLEETGLVFVVRSMELDYLKPARLDDLLTV 74 (126)
T ss_pred CcceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCC-----H-HHHhhcCCcEEEEEEEEEEEcCcccCCCEEEE
Confidence 46689999999999999999999999999999999999862 2 345 3569999999999999999999999999
Q ss_pred EEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCCHHHHH
Q 016118 218 ETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQ 270 (395)
Q Consensus 218 ~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP~ev~~ 270 (395)
+||+.++++.++.+.|.|++ +|+++++|.++||++|.++|||+++|+++++
T Consensus 75 ~~~v~~~~~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~~~~~~~~~p~~~~~ 125 (126)
T TIGR02799 75 TTRVVELKGASLVFAQEVRR--GDTLLCEATVEVACVDASDMRPRRLPAELRA 125 (126)
T ss_pred EEEEEecCceEEEEEEEEEe--CCEEEEEEEEEEEEEECCCCcCcCCCHHHhh
Confidence 99999999999999999995 6999999999999999999999999999875
No 7
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.91 E-value=1.1e-23 Score=176.63 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=108.2
Q ss_pred EEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEE
Q 016118 142 NFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221 (395)
Q Consensus 142 ~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv 221 (395)
+++|||+|||++|||+++.|++|||+|+..|++.+|+ +. ..+.+.|++|++++++++|++||++||+|+|+||+
T Consensus 1 ~~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~-----~~-~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~ 74 (117)
T TIGR00051 1 PVRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGF-----PQ-SVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQI 74 (117)
T ss_pred CEEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCC-----CH-HHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEE
Confidence 3689999999999999999999999999999999875 22 45778899999999999999999999999999999
Q ss_pred EEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCC
Q 016118 222 SASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMP 265 (395)
Q Consensus 222 ~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP 265 (395)
.++++.++.+.|+|++. +|++++.+.++||++|.++|||++||
T Consensus 75 ~~~~~~s~~~~~~i~~~-~~~~~~~~~~~~v~~d~~~~r~~~ip 117 (117)
T TIGR00051 75 EELNGFSFVFSQEIFNE-DEALLKAATVIVVCVDPKKQKPVAIP 117 (117)
T ss_pred EecCcEEEEEEEEEEeC-CCcEEEeeEEEEEEEECCCCeEcCCC
Confidence 99999999999999985 78888888888999999999999997
No 8
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.90 E-value=6.4e-23 Score=180.23 Aligned_cols=132 Identities=20% Similarity=0.295 Sum_probs=122.1
Q ss_pred CeeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEE
Q 016118 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (395)
Q Consensus 136 ~~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V 215 (395)
...|..+++|||+|||++|||++++|+.||++|+.++++.+|+ .. ..+.+.|+.|+|++.+|+|++|.++||.+
T Consensus 3 ~~~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~-----~~-~~~~~~~~~~~v~~~~i~y~~p~~~~d~l 76 (137)
T COG0824 3 SFPFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGF-----DY-ADLEEGGIAFVVVEAEIDYLRPARLGDVL 76 (137)
T ss_pred CcceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCC-----CH-HHHhhCCcEEEEEEEEeEECCCccCCCEE
Confidence 3568889999999999999999999999999999999999775 33 45777789999999999999999999999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCCHHHHHhhccc
Q 016118 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPY 275 (395)
Q Consensus 216 ~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP~ev~~~i~~y 275 (395)
+|+||+.++++.++...|+|++. ++++++|.+++|++|.+++||+++|+++++.+..+
T Consensus 77 ~v~~~v~~~~~~s~~~~~~i~~~--~~l~a~~~~~~V~v~~~~~kp~~~P~~~~~~l~~~ 134 (137)
T COG0824 77 TVRTRVEELGGKSLTLGYEIVNE--DELLATGETTLVCVDLKTGKPVPLPPELREALEAL 134 (137)
T ss_pred EEEEEEEeecCeEEEEEEEEEeC--CEEEEEEEEEEEEEECCCCCcccCCHHHHHHHHHh
Confidence 99999999999999999999985 49999999999999999999999999999988764
No 9
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.85 E-value=2.1e-20 Score=195.74 Aligned_cols=135 Identities=11% Similarity=0.093 Sum_probs=122.5
Q ss_pred CeeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEE
Q 016118 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (395)
Q Consensus 136 ~~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V 215 (395)
..+++.+++|+++|||++|||+++.|++||++++.+|+..+|+ +. .....+.+|++++++|+|.+|+++||+|
T Consensus 343 ~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~-----~~--~~~~~~~~~vvv~~~i~y~rp~~~gD~v 415 (495)
T PRK07531 343 QPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGV-----DA--AYVAAGHSYYTVETHIRHLGEAKAGQAL 415 (495)
T ss_pred CceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCC-----CH--HHHhcCCcEEEEEEEEEEcccCCCCCEE
Confidence 3456789999999999999999999999999999999999886 22 2334589999999999999999999999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCCHHHHHhhccccCC
Q 016118 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLN 278 (395)
Q Consensus 216 ~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP~ev~~~i~~y~~~ 278 (395)
+|+||+.++++.++.+.|+|++. +|++++++.++||++|+++||++++|+++++.+..+..+
T Consensus 416 ~I~t~v~~~~~~s~~~~~~i~~~-~g~l~A~g~~~~v~vD~~trr~~~iP~e~r~~l~~~~~~ 477 (495)
T PRK07531 416 HVETQLLSGDEKRLHLFHTLYDA-GGELIATAEHMLLHVDLKAGKAVPAPAAVLAALKPIAEA 477 (495)
T ss_pred EEEEEEEecCCcEEEEEEEEECC-CCcEEEEEEEEEEEEECCCCccCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999984 899999999999999999999999999999988766543
No 10
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.84 E-value=1.7e-19 Score=152.95 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=99.7
Q ss_pred eecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEEEEe
Q 016118 145 IRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSAS 224 (395)
Q Consensus 145 VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~ 224 (395)
|||+||| +|||+++.|++||++|+.+++.+.|+ . ..+...|+++++.+.+|+|.+|.+++|+++|++++.++
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~-~------~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~ 72 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGL-Y------DELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEI 72 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTS-C------HHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcch-h------hHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEE
Confidence 7999999 99999999999999999999998886 1 46788899999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEECCCCcE--EEEEEEEEEEEEcCCCcccCCCHHHHHhh
Q 016118 225 GKNGMRRDWLIRNAKTGET--LTRATSLWVMMNKLTRRLSKMPDEVRQEI 272 (395)
Q Consensus 225 ~k~~~~R~f~I~d~~~Gev--ia~A~S~wV~iD~~tRRpvrIP~ev~~~i 272 (395)
++.++...|.|++.++|+. +++|.+++|++|.++ |++++|++++++|
T Consensus 73 ~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~~-r~~~~P~~~~~~l 121 (121)
T PF13279_consen 73 GGKSFRFEQEIFRPADGKGELAATGRTVMVFVDYKT-RSVPIPDELREAL 121 (121)
T ss_dssp ESSEEEEEEEEEECSTTEEEEEEEEEEEEEEEETTT-CE-B--HHHHHHH
T ss_pred CCcEEEEEEEEEEcCCCceEEEEEEEEEEEEEeCCC-CcCCCCHHHHhcC
Confidence 9999999999998435655 999999999999999 6999999998764
No 11
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.73 E-value=1.1e-16 Score=130.10 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=101.6
Q ss_pred EEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEE
Q 016118 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVE 218 (395)
Q Consensus 139 f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~ 218 (395)
|+.++.|+++|||.+||++++.|++|+++++..++...|+.. ..+...+.+|++.+.+++|.+|+.+||+|+|+
T Consensus 1 ~~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~ 74 (110)
T cd00586 1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGY------DELEEQGLGLVVVELEIDYLRPLRLGDRLTVE 74 (110)
T ss_pred CcEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCH------HHHHhCCceEEEEEeEeeEcCccCCCCEEEEE
Confidence 467899999999999999999999999999999999988632 34567899999999999999999999999999
Q ss_pred EEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEE
Q 016118 219 TWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255 (395)
Q Consensus 219 Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD 255 (395)
+|+.+.++.++.+.+.+++. +|++++++.+.|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~g~~~a~~~~~~~~~d 110 (110)
T cd00586 75 TRVLRLGRKSFTFEQEIFRE-DGELLATAETVLVCVD 110 (110)
T ss_pred EEEEecCcEEEEEEEEEECC-CCeEEEEEEEEEEEeC
Confidence 99999999999999999985 7999999999999987
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.27 E-value=2.7e-10 Score=95.77 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=95.1
Q ss_pred CeeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEe-EEEEeecCCCCCE
Q 016118 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRM-QVVVDRYPTWNDV 214 (395)
Q Consensus 136 ~~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~-~Ie~~r~P~~gD~ 214 (395)
.-.+...++|++.+||+.|+++.+.|+.++++++..++... . +..+++... +++|.+|..+||.
T Consensus 5 ~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~-------------~--~~~~~~~~~~~~~f~~p~~~gd~ 69 (123)
T cd03442 5 DTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRH-------------A--GGRVVTASVDRIDFLKPVRVGDV 69 (123)
T ss_pred ccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHH-------------h--CCcEEEEEECceEEcCccccCcE
Confidence 34567799999999999999999999999999987665321 1 113444455 7999999999999
Q ss_pred EEEEEEEEEeCCcEEEEEEEEEECC----CCcEEEEEEEEEEEEEcCCCcccCCC
Q 016118 215 VNVETWVSASGKNGMRRDWLIRNAK----TGETLTRATSLWVMMNKLTRRLSKMP 265 (395)
Q Consensus 215 V~I~Twv~~~~k~~~~R~f~I~d~~----~Gevia~A~S~wV~iD~~tRRpvrIP 265 (395)
|.+++++.+.++.++..++.+++.+ +++++++|..++|++| .++||.++|
T Consensus 70 l~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~-~~~~~~~~p 123 (123)
T cd03442 70 VELSARVVYTGRTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD-EDGKPRPVP 123 (123)
T ss_pred EEEEEEEEEecCCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC-CCCCeeeCC
Confidence 9999999999999999999999852 2479999999999999 568999887
No 13
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.96 E-value=2.8e-08 Score=75.36 Aligned_cols=98 Identities=20% Similarity=0.206 Sum_probs=87.9
Q ss_pred EEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEE
Q 016118 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (395)
Q Consensus 140 ~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~T 219 (395)
...++|+++|+|.+++++...++.++++++..++...+ . .+..+++.+++++|.+|+..||.|.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~g~~v~~~~ 68 (100)
T cd03440 2 VLRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLG---------G----RGLGAVTLSLDVRFLRPVRPGDTLTVEA 68 (100)
T ss_pred EEEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhc---------c----CCCeEEEEEEEeEEecCCCCCCEEEEEE
Confidence 34789999999999999999999999999999887542 1 5678999999999999999999999999
Q ss_pred EEEEeCCcEEEEEEEEEECCCCcEEEEEEEEE
Q 016118 220 WVSASGKNGMRRDWLIRNAKTGETLTRATSLW 251 (395)
Q Consensus 220 wv~~~~k~~~~R~f~I~d~~~Gevia~A~S~w 251 (395)
++...++.++.....+.+. +|++++.+...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 99 (100)
T cd03440 69 EVVRVGRSSVTVEVEVRNE-DGKLVATATATF 99 (100)
T ss_pred EEEeccccEEEEEEEEECC-CCCEEEEEEEEe
Confidence 9999999888888999985 799999997765
No 14
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.76 E-value=1.5e-07 Score=72.87 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=70.5
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEE
Q 016118 153 DGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRD 232 (395)
Q Consensus 153 ~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~ 232 (395)
+|+++.+.|+.|+++++..++...+. .+...++...+++|.+|.+.||.|++++|+.+.++.++.-.
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~-------------~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~ 67 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGG-------------DGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVE 67 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHS-------------STEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhcc-------------CCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEE
Confidence 58999999999999999999987642 16789999999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEE
Q 016118 233 WLIRNAKTGETLT 245 (395)
Q Consensus 233 f~I~d~~~Gevia 245 (395)
+++++. +++++|
T Consensus 68 ~~v~~~-~~~~~~ 79 (79)
T PF03061_consen 68 VEVYSE-DGRLCA 79 (79)
T ss_dssp EEEEET-TSCEEE
T ss_pred EEEEEC-CCcEEC
Confidence 999996 787765
No 15
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.59 E-value=2.2e-06 Score=70.94 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=88.5
Q ss_pred CeeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEE
Q 016118 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (395)
Q Consensus 136 ~~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V 215 (395)
....+..+++...++|..|.++...|..+++.++...+.... ..+...++.+++++|.+|+.. +.|
T Consensus 11 ~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~-------------~~~~~~~~~~~~i~f~~p~~~-~~v 76 (113)
T cd03443 11 PGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSAL-------------PPGALAVTVDLNVNYLRPARG-GDL 76 (113)
T ss_pred CCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhcc-------------CCCCceEEEEEEEeEEcCCCC-CeE
Confidence 345677899999999999999999999999999887665421 134567889999999999999 999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 216 ~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
.+++++.+.++....-+..+++. +|+++++|+.+|+
T Consensus 77 ~~~~~v~~~g~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 77 TARARVVKLGRRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred EEEEEEEecCceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 99999999999888888999985 6999999999886
No 16
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=98.56 E-value=3.8e-07 Score=88.34 Aligned_cols=96 Identities=18% Similarity=0.333 Sum_probs=70.3
Q ss_pred CeeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEE
Q 016118 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (395)
Q Consensus 136 ~~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V 215 (395)
...+..+++||++|+|.+|||||..|++|+.++--. ++.+ ...+.++.|.|.+..++||+|
T Consensus 163 ~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~----------------~~~~---~~~~~~i~I~y~~E~~~gd~i 223 (261)
T PF01643_consen 163 EPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPE----------------EFLE---KYQIKSIDINYKKEIRYGDTI 223 (261)
T ss_dssp TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-H----------------HHHC---CEEEEEEEEEE-S--BTT-EE
T ss_pred hhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcc----------------hhhc---cCCcEEEEEEEccccCCCCEE
Confidence 556789999999999999999999999999998322 2222 245889999999999999999
Q ss_pred EEEEEEEEeC-CcEEEEEEEEEECCCCcEEEEEEEEE
Q 016118 216 NVETWVSASG-KNGMRRDWLIRNAKTGETLTRATSLW 251 (395)
Q Consensus 216 ~I~Twv~~~~-k~~~~R~f~I~d~~~Gevia~A~S~w 251 (395)
.+.+.+.... .....-.+.|++. +|+.+++|.+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~h~i~~~-~g~~~~~~~~~W 259 (261)
T PF01643_consen 224 TSYTEVEKDEEEDGLSTLHEIRNE-DGEEVARARTEW 259 (261)
T ss_dssp EEEEEEEEECCTTEEEEEEEEECT--TCEEEEEEEEE
T ss_pred EEEEEEcccccCCceEEEEEEEcC-CCceEEEEEEEE
Confidence 9999876443 3344456889885 699999999999
No 17
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=98.41 E-value=2.1e-06 Score=73.94 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=70.8
Q ss_pred CCCCCCCC----CchhHHhhhccc---------cChhhhc----cCceEEEEEEeccccCCCCeEEEEEEeecCccCccc
Q 016118 288 RKLPKLGD----STADYVRRGLTS---------APQQILE----SHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLV 350 (395)
Q Consensus 288 ~k~sdlD~----NNa~Yi~w~ld~---------lp~e~l~----~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~ 350 (395)
.++.|+|. ||..|++|+.++ ++..-+. ...+.+.+|+|++++++||.|.+.+++...
T Consensus 9 Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~------ 82 (130)
T PRK10800 9 VYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSM------ 82 (130)
T ss_pred EeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEee------
Confidence 47788997 999999999874 2221122 224889999999999999999999998762
Q ss_pred CCCceEEEEEEEcCCCcEEEEEEEEEEEcCCCC
Q 016118 351 NLGSVECQHLLRLEEGAEVLRARTEWRPKDAHN 383 (395)
Q Consensus 351 ~~~~~~~~H~ir~edG~ei~rart~W~~k~~~~ 383 (395)
+..++.+.|.+..++|+++++|++.|...|.+.
T Consensus 83 ~~~s~~~~~~i~~~~g~~~a~~~~~~v~~d~~~ 115 (130)
T PRK10800 83 RGTSLTFTQRIVNAEGTLLNEAEVLIVCVDPLK 115 (130)
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEEEEEEEECCC
Confidence 124566788887778999999999999988664
No 18
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.34 E-value=3.3e-06 Score=70.32 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=68.5
Q ss_pred CCCCCCCC----CchhHHhhhccc---------cChhhhccC----ceEEEEEEeccccCCCCeEEEEEEeecCccCccc
Q 016118 288 RKLPKLGD----STADYVRRGLTS---------APQQILESH----QLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLV 350 (395)
Q Consensus 288 ~k~sdlD~----NNa~Yi~w~ld~---------lp~e~l~~~----~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~ 350 (395)
.+++|+|. ||+.|+.|+.++ ++.+.+..+ .+.+++|+|++++++||.|.+.+++...
T Consensus 4 V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~------ 77 (117)
T TIGR00051 4 VYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEEL------ 77 (117)
T ss_pred EEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEec------
Confidence 46788887 999999999986 444333333 5899999999999999999999998762
Q ss_pred CCCceEEEEEEEcCCCcEEEEEEEEEEEcCCC
Q 016118 351 NLGSVECQHLLRLEEGAEVLRARTEWRPKDAH 382 (395)
Q Consensus 351 ~~~~~~~~H~ir~edG~ei~rart~W~~k~~~ 382 (395)
+...+.+.|.+..++|..++.+.+.|...|..
T Consensus 78 ~~~s~~~~~~i~~~~~~~~~~~~~~~v~~d~~ 109 (117)
T TIGR00051 78 NGFSFVFSQEIFNEDEALLKAATVIVVCVDPK 109 (117)
T ss_pred CcEEEEEEEEEEeCCCcEEEeeEEEEEEEECC
Confidence 23456778888777777777777778777654
No 19
>PLN02370 acyl-ACP thioesterase
Probab=98.30 E-value=4e-06 Score=86.40 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=68.9
Q ss_pred EEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEE
Q 016118 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (395)
Q Consensus 140 ~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~T 219 (395)
+..++|||+|+|.+|||||..|++|++|+.-. ++.+. ..+.++.|+|.+..++||.|.+.+
T Consensus 303 ~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~----------------e~l~~---~~l~~i~I~Y~kE~~~gd~V~s~~ 363 (419)
T PLN02370 303 RKGLTPRWSDLDVNQHVNNVKYIGWILESAPP----------------PIMES---HELAAITLEYRRECGRDSVLQSLT 363 (419)
T ss_pred eeeeeecHHHCcccCccccHHHHHHHHhhCch----------------hhhhc---ceEEEEEEEEcccCCCCCEEEEEE
Confidence 45599999999999999999999999997221 12122 247899999999999999999888
Q ss_pred EEEEe--CCc---E-EEEEEEEEECCCCcEEEEEEEEEEE
Q 016118 220 WVSAS--GKN---G-MRRDWLIRNAKTGETLTRATSLWVM 253 (395)
Q Consensus 220 wv~~~--~k~---~-~~R~f~I~d~~~Gevia~A~S~wV~ 253 (395)
.+.+. +.. . ......+.. ++|++++++.+.|-=
T Consensus 364 ~~~~~~~~~~~~~~~~~~~h~~~~-~dG~e~a~a~t~Wr~ 402 (419)
T PLN02370 364 AVSGTGIGNLGTAGDVECQHLLRL-EDGAEIVRGRTEWRP 402 (419)
T ss_pred eecccccccccCCCcceEEEEEEc-CCCeEEEEEEEEEEE
Confidence 75321 111 1 112234444 489999999999963
No 20
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=98.23 E-value=8.2e-06 Score=71.71 Aligned_cols=90 Identities=16% Similarity=0.054 Sum_probs=71.9
Q ss_pred CCCCCCCC----CchhHHhhhccc---------cChhhhcc----CceEEEEEEeccccCCCCeEEEEEEeecCccCccc
Q 016118 288 RKLPKLGD----STADYVRRGLTS---------APQQILES----HQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLV 350 (395)
Q Consensus 288 ~k~sdlD~----NNa~Yi~w~ld~---------lp~e~l~~----~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~ 350 (395)
.++.|+|. ||++|+.|+.++ ++..-+.+ -.+.++.|+|++++++||.+.+.+.+...
T Consensus 12 V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~------ 85 (137)
T COG0824 12 VRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEEL------ 85 (137)
T ss_pred EEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEee------
Confidence 57889997 999999998773 22222222 46899999999999999999999998763
Q ss_pred CCCceEEEEEEEcCCCcEEEEEEEEEEEcCCCCC
Q 016118 351 NLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNF 384 (395)
Q Consensus 351 ~~~~~~~~H~ir~edG~ei~rart~W~~k~~~~~ 384 (395)
+..++.+.|.|..++ +.++.|++.+...+.++.
T Consensus 86 ~~~s~~~~~~i~~~~-~l~a~~~~~~V~v~~~~~ 118 (137)
T COG0824 86 GGKSLTLGYEIVNED-ELLATGETTLVCVDLKTG 118 (137)
T ss_pred cCeEEEEEEEEEeCC-EEEEEEEEEEEEEECCCC
Confidence 235788899998865 999999999999987653
No 21
>PRK10694 acyl-CoA esterase; Provisional
Probab=98.17 E-value=9.5e-05 Score=64.84 Aligned_cols=111 Identities=15% Similarity=0.056 Sum_probs=88.1
Q ss_pred EEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEe-EEEEeecCCCCCEEEEE
Q 016118 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRM-QVVVDRYPTWNDVVNVE 218 (395)
Q Consensus 140 ~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~-~Ie~~r~P~~gD~V~I~ 218 (395)
...+.|...+++..|.++=..+|.|+.+++.-.+... .+-.++.+++ .++|.+|.+.||.|++.
T Consensus 13 ~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~---------------~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~ 77 (133)
T PRK10694 13 VLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEI---------------AHGRVVTVRVEGMTFLRPVAVGDVVCCY 77 (133)
T ss_pred EEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHH---------------cCCceEEEEECceEECCCcccCcEEEEE
Confidence 3456899999999999999999999999877655432 1224677777 77999999999999999
Q ss_pred EEEEEeCCcEEEEEEEEEECC-----CC--cEEEEEEEEEEEEEcCCCcccCCCH
Q 016118 219 TWVSASGKNGMRRDWLIRNAK-----TG--ETLTRATSLWVMMNKLTRRLSKMPD 266 (395)
Q Consensus 219 Twv~~~~k~~~~R~f~I~d~~-----~G--evia~A~S~wV~iD~~tRRpvrIP~ 266 (395)
+++...++.++....+++.+. .| ..++.+..++|.+| +.+||.++|+
T Consensus 78 a~V~~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd-~~g~p~~vp~ 131 (133)
T PRK10694 78 ARCVKTGTTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVD-PEGKPRALPV 131 (133)
T ss_pred EEEEEccCceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEEC-CCCCEEeCCC
Confidence 999999999998777777421 12 24667888888888 5789999884
No 22
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=98.07 E-value=2.9e-05 Score=65.79 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=68.4
Q ss_pred CCCCCCCC----CchhHHhhhccc---------cChh-hhcc----CceEEEEEEeccccCCCCeEEEEEEeecCccCcc
Q 016118 288 RKLPKLGD----STADYVRRGLTS---------APQQ-ILES----HQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNL 349 (395)
Q Consensus 288 ~k~sdlD~----NNa~Yi~w~ld~---------lp~e-~l~~----~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~ 349 (395)
.++.|+|. ||+.|+.|+.++ ++.+ .... ..+.++.|+|++++++||.|.+.+++...
T Consensus 7 vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~----- 81 (126)
T TIGR02799 7 VYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVEL----- 81 (126)
T ss_pred EEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEec-----
Confidence 46788997 999999999652 3332 2222 25789999999999999999999998762
Q ss_pred cCCCceEEEEEEEcCCCcEEEEEEEEEEEcCCCC
Q 016118 350 VNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHN 383 (395)
Q Consensus 350 ~~~~~~~~~H~ir~edG~ei~rart~W~~k~~~~ 383 (395)
+...+.+.+.+.. +|.++|+|.+.|...|.+.
T Consensus 82 -~~~~~~~~~~i~~-~g~~~a~~~~~~v~vd~~~ 113 (126)
T TIGR02799 82 -KGASLVFAQEVRR-GDTLLCEATVEVACVDASD 113 (126)
T ss_pred -CceEEEEEEEEEe-CCEEEEEEEEEEEEEECCC
Confidence 2355667777774 6899999999999887653
No 23
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=98.03 E-value=3.1e-05 Score=62.32 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=64.2
Q ss_pred CCCCCCC----CchhHHhhhccccChhh-------------hccCceEEEEEEeccccCCCCeEEEEEEeecCccCcccC
Q 016118 289 KLPKLGD----STADYVRRGLTSAPQQI-------------LESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVN 351 (395)
Q Consensus 289 k~sdlD~----NNa~Yi~w~ld~lp~e~-------------l~~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~ 351 (395)
+..|+|. ||..|++|+.++...-+ ...+.+.++.++|++++..||.|.+.+++....
T Consensus 8 ~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~------ 81 (110)
T cd00586 8 RFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLG------ 81 (110)
T ss_pred EEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecC------
Confidence 4566776 89999999998764322 224468999999999999999999999886521
Q ss_pred CCceEEEEEEEcCCCcEEEEEEEEEEEcC
Q 016118 352 LGSVECQHLLRLEEGAEVLRARTEWRPKD 380 (395)
Q Consensus 352 ~~~~~~~H~ir~edG~ei~rart~W~~k~ 380 (395)
.......+.+..++|+++|++++.|...|
T Consensus 82 ~~~~~~~~~~~~~~g~~~a~~~~~~~~~d 110 (110)
T cd00586 82 RKSFTFEQEIFREDGELLATAETVLVCVD 110 (110)
T ss_pred cEEEEEEEEEECCCCeEEEEEEEEEEEeC
Confidence 13334455565557999999999998653
No 24
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=97.69 E-value=0.0019 Score=58.25 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=88.7
Q ss_pred EEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEE
Q 016118 141 QNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETW 220 (395)
Q Consensus 141 ~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Tw 220 (395)
....+-..|++++|.++=..+|.||.+++.-.+... ..+..--+.==++.|.+|.+.||.|.+.++
T Consensus 16 ~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~--------------a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~ 81 (157)
T COG1607 16 LRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRH--------------AGGRVVTASVDSVDFKKPVRVGDIVCLYAR 81 (157)
T ss_pred EEEEecCCccCcccccccHHHHHHHHHHHHHHHHHH--------------hCCeEEEEEeceEEEccccccCcEEEEEEE
Confidence 577899999999999999999999999987655432 122222233357899999999999999999
Q ss_pred EEEeCCcEEEEEEEEEEC--C--CCcEEEEEEEEEEEEEcCCCcccCCCHHH
Q 016118 221 VSASGKNGMRRDWLIRNA--K--TGETLTRATSLWVMMNKLTRRLSKMPDEV 268 (395)
Q Consensus 221 v~~~~k~~~~R~f~I~d~--~--~Gevia~A~S~wV~iD~~tRRpvrIP~ev 268 (395)
+...|+.++...-+++.+ . .......|.-++|-+|-+ +||.++|++.
T Consensus 82 v~~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~~-gkP~~vp~~~ 132 (157)
T COG1607 82 VVYTGRTSMEVGVEVWAEDIRSGERRLATSAYFTFVAVDED-GKPTPVPREE 132 (157)
T ss_pred EeecCcccEEEEEEEEEecccCCcceEeeeEEEEEEEECCC-CCcccCCccC
Confidence 999999999777777643 1 234566788888888865 9999999764
No 25
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=97.67 E-value=0.00022 Score=60.06 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCCCCCC---CchhHHhhhccccC--------hhhhc----cCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCC
Q 016118 289 KLPKLGD---STADYVRRGLTSAP--------QQILE----SHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLG 353 (395)
Q Consensus 289 k~sdlD~---NNa~Yi~w~ld~lp--------~e~l~----~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~ 353 (395)
++.|+|. ||+.|++|+.++.- .+.+. ...+.+.+|.|++|+.+||.+.+.+.+... +..
T Consensus 2 r~~D~D~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~------~~~ 75 (121)
T PF13279_consen 2 RWSDTDNGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEI------GGK 75 (121)
T ss_dssp -GGGB-TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEE------ESS
T ss_pred CHHHccCCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEE------CCc
Confidence 4567772 99999998876321 22222 235889999999999999999988887652 236
Q ss_pred ceEEEEEEEc-CCCcE--EEEEEEEEEEcCCCC
Q 016118 354 SVECQHLLRL-EEGAE--VLRARTEWRPKDAHN 383 (395)
Q Consensus 354 ~~~~~H~ir~-edG~e--i~rart~W~~k~~~~ 383 (395)
.+.+.|.+.. .+|+. +|+|++.+...|.+.
T Consensus 76 s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~~ 108 (121)
T PF13279_consen 76 SFRFEQEIFRPADGKGELAATGRTVMVFVDYKT 108 (121)
T ss_dssp EEEEEEEEEECSTTEEEEEEEEEEEEEEEETTT
T ss_pred EEEEEEEEEEcCCCceEEEEEEEEEEEEEeCCC
Confidence 6788887765 35655 999999999887665
No 26
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.57 E-value=0.0033 Score=53.00 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=79.6
Q ss_pred EEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEE
Q 016118 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (395)
Q Consensus 140 ~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~T 219 (395)
+..+.++...++..|.+.=..++.+++.++...... ....+...+-+.++++|.+|++-| .|+++.
T Consensus 19 ~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~-------------~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a 84 (117)
T TIGR00369 19 EATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYL-------------CNSGGQAVVGLELNANHLRPAREG-KVRAIA 84 (117)
T ss_pred EEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHh-------------hcCCCceEEEEEEEeeeccccCCC-EEEEEE
Confidence 567788888899999999999999988876322211 112344567779999999999999 999999
Q ss_pred EEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 220 WVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 220 wv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
++.+.++....-+-+++|+ +|++++.++.++.
T Consensus 85 ~v~~~gr~~~~~~~~i~~~-~g~~va~~~~t~~ 116 (117)
T TIGR00369 85 QVVHLGRQTGVAEIEIVDE-QGRLCALSRGTTA 116 (117)
T ss_pred EEEecCceEEEEEEEEECC-CCCEEEEEEEEEc
Confidence 9999999888788899996 8999999998864
No 27
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.52 E-value=0.00043 Score=73.17 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=69.6
Q ss_pred CCCCCCC----CchhHHhhhccc---------cChhhhc---cCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCC
Q 016118 289 KLPKLGD----STADYVRRGLTS---------APQQILE---SHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNL 352 (395)
Q Consensus 289 k~sdlD~----NNa~Yi~w~ld~---------lp~e~l~---~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~ 352 (395)
++.++|. ||.+|++|+.++ ++.+.+. ...+.+.+|+|++|+++||.|.+.+++... +.
T Consensus 353 ~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~------~~ 426 (495)
T PRK07531 353 PPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSG------DE 426 (495)
T ss_pred CHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEec------CC
Confidence 4556776 999999999874 2333322 225799999999999999999999998762 23
Q ss_pred CceEEEEEEEcCCCcEEEEEEEEEEEcCCCC
Q 016118 353 GSVECQHLLRLEEGAEVLRARTEWRPKDAHN 383 (395)
Q Consensus 353 ~~~~~~H~ir~edG~ei~rart~W~~k~~~~ 383 (395)
..+.+.|.+..++|+.++.|++.|...|.+.
T Consensus 427 ~s~~~~~~i~~~~g~l~A~g~~~~v~vD~~t 457 (495)
T PRK07531 427 KRLHLFHTLYDAGGELIATAEHMLLHVDLKA 457 (495)
T ss_pred cEEEEEEEEECCCCcEEEEEEEEEEEEECCC
Confidence 5677788887778999999999999988664
No 28
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=97.49 E-value=0.00037 Score=66.09 Aligned_cols=88 Identities=9% Similarity=0.008 Sum_probs=67.1
Q ss_pred eEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEE
Q 016118 138 IFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (395)
Q Consensus 138 ~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I 217 (395)
.+...|.||++|+|.+|||||+.|.+++.|.-..++..+ . -..++.++|.++...||+|+|
T Consensus 152 s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~---------------~----~p~r~~l~y~keva~G~~iti 212 (250)
T COG3884 152 SEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKL---------------Y----GPLRLTLEYVKEVAPGEKITI 212 (250)
T ss_pred cccccceeEEEeeccccccccceehHHHHHHHhhhhHhh---------------c----ccceeEEEEEcccCCCCeEEE
Confidence 455689999999999999999999999999866544322 1 136899999999999999999
Q ss_pred EEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEE
Q 016118 218 ETWVSASGKNGMRRDWLIRNAKTGETLTRATSLW 251 (395)
Q Consensus 218 ~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~w 251 (395)
.+.....+..- .+.. +|.+.+.+..+|
T Consensus 213 ~~e~~~~~s~~------~f~~-d~~v~~lt~i~~ 239 (250)
T COG3884 213 VYEVHPLESKH------QFTS-DGQVNALTYIVG 239 (250)
T ss_pred EEEEcccCcee------eecC-CcceEEEEEEEe
Confidence 99988664321 1222 577766666655
No 29
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.24 E-value=0.014 Score=49.10 Aligned_cols=97 Identities=14% Similarity=0.034 Sum_probs=77.7
Q ss_pred EEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEE
Q 016118 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (395)
Q Consensus 140 ~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~T 219 (395)
...+.++-..++..|.++=..++.++..+....+.. .+..-+...++++|.+|.+.||.|.++.
T Consensus 17 ~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~----------------~~~~~~t~~~~i~f~rp~~~G~~l~~~a 80 (114)
T TIGR02286 17 RVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNS----------------YGDAAVAAQCTIDFLRPGRAGERLEAEA 80 (114)
T ss_pred EEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcC----------------CCCceEEEEEEEEEecCCCCCCEEEEEE
Confidence 347778888889999999999999999885433211 0111245788999999999999999999
Q ss_pred EEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 016118 220 WVSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (395)
Q Consensus 220 wv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~ 253 (395)
++.+.++.....+-.|+++ +|++++.++.+|-.
T Consensus 81 ~v~~~g~~~~~~~~~i~~~-~~~~va~~~~t~~~ 113 (114)
T TIGR02286 81 VEVSRGGRTGTYDVEVVNQ-EGELVALFRGTSRR 113 (114)
T ss_pred EEEEeCCcEEEEEEEEEcC-CCCEEEEEEEEEEE
Confidence 9999988777777889985 89999999998864
No 30
>PLN02647 acyl-CoA thioesterase
Probab=96.98 E-value=0.013 Score=61.09 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=87.5
Q ss_pred EEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEE-eEEEEeecCCCCCEEEEEEEE
Q 016118 143 FSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTR-MQVVVDRYPTWNDVVNVETWV 221 (395)
Q Consensus 143 ~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r-~~Ie~~r~P~~gD~V~I~Twv 221 (395)
..+|-.+++..|+++.+.+|.+|.++|..-+....-..+ .....+..|-+. -+|+|.+|.+.||.|.|...+
T Consensus 98 ~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~-------~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~V 170 (437)
T PLN02647 98 FILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDD-------STTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAV 170 (437)
T ss_pred hhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCc-------ccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEE
Confidence 367777799999999999999999998766654321101 111222333333 468899999999999999999
Q ss_pred EEeCCcEEEEEEEEEECC------CCcEEEEEEEEEEEEEcCCCcccCCCH
Q 016118 222 SASGKNGMRRDWLIRNAK------TGETLTRATSLWVMMNKLTRRLSKMPD 266 (395)
Q Consensus 222 ~~~~k~~~~R~f~I~d~~------~Gevia~A~S~wV~iD~~tRRpvrIP~ 266 (395)
...|+.++...-.++.+. ...+++.|..++|.+|-+++||+++|+
T Consensus 171 t~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~ 221 (437)
T PLN02647 171 TWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNR 221 (437)
T ss_pred EEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCC
Confidence 999999997766676531 124688999999999987899998864
No 31
>PRK10293 acyl-CoA esterase; Provisional
Probab=96.70 E-value=0.077 Score=46.64 Aligned_cols=101 Identities=8% Similarity=-0.117 Sum_probs=81.0
Q ss_pred EEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEE
Q 016118 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVE 218 (395)
Q Consensus 139 f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~ 218 (395)
-+.++.|+-..+.+.|.++=..++.+++.++...... ....+...+-..++++|.+|.+-| .|+.+
T Consensus 36 ~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~-------------~~~~~~~~vTiel~infl~p~~~g-~l~a~ 101 (136)
T PRK10293 36 LEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYL-------------CTEGEQKVVGLEINANHVRSAREG-RVRGV 101 (136)
T ss_pred EEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHh-------------cccCCceEEEEEEEeEEecccCCc-eEEEE
Confidence 3456778888899999999999999887765432221 112345678889999999999877 69999
Q ss_pred EEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 016118 219 TWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (395)
Q Consensus 219 Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~i 254 (395)
-++.+.||..+.-+-+|+|+ +|++++.++.+|.++
T Consensus 102 a~vv~~Gr~~~~~~~~v~d~-~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 102 CKPLHLGSRHQVWQIEIFDE-KGRLCCSSRLTTAIL 136 (136)
T ss_pred EEEEecCCCEEEEEEEEEeC-CCCEEEEEEEEEEEC
Confidence 99999999888888999996 899999999998764
No 32
>COG5496 Predicted thioesterase [General function prediction only]
Probab=96.69 E-value=0.09 Score=45.72 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=85.0
Q ss_pred cCCeeEEEEEEeecccCCCC-------CCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEe
Q 016118 134 QDGFIFRQNFSIRSYEIGAD-------GTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVD 206 (395)
Q Consensus 134 ~~~~~f~~~~~VR~~D~D~~-------G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~ 206 (395)
.+++.++.++.|+-..+++- .-+--+.++-||++|+.+.+.. +| +.|.+-|-++..++-.
T Consensus 2 ~~g~~~e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~------------~L-d~g~ttVG~ev~vrHl 68 (130)
T COG5496 2 MDGLTLEGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQP------------YL-DNGETTVGTEVLVRHL 68 (130)
T ss_pred CCceeeEEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHh------------hC-cCCcceeeEEEEeeec
Confidence 36788899999998888831 1233456788999988876653 22 5688889999999999
Q ss_pred ecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCC
Q 016118 207 RYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLT 258 (395)
Q Consensus 207 r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~t 258 (395)
.+.-.|.+|+|.+.+.++.+......-+.. .+|+.+++++-+-+.+|.++
T Consensus 69 a~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~--~~~~~Ig~g~h~R~iv~~~k 118 (130)
T COG5496 69 AATPPGLTVTIGARLEKVEGRKVKFRIIAM--EGGDKIGEGTHTRVIVPREK 118 (130)
T ss_pred cCCCCCCeEEEEEEEEEEeccEEEEEEEEe--eCCcEEeeeEEEEEEecHHH
Confidence 999999999999999999766554333444 37999999999999988653
No 33
>PRK10254 thioesterase; Provisional
Probab=96.41 E-value=0.22 Score=43.93 Aligned_cols=101 Identities=8% Similarity=-0.030 Sum_probs=81.9
Q ss_pred EEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEE
Q 016118 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVE 218 (395)
Q Consensus 139 f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~ 218 (395)
-+..+.|+-..+.+.|.++=..++.+++.++...+.. ....+...+-+.++++|.||.+-| .|..+
T Consensus 36 ~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~-------------~~~~g~~~vTiel~in~Lrp~~~g-~l~a~ 101 (137)
T PRK10254 36 LEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFL-------------MTRDGQCVVGTELNATHHRPVSEG-KVRGV 101 (137)
T ss_pred EEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHh-------------hCCCCCeEEEEEEEeEEeccCcCC-eEEEE
Confidence 3456777777889999999999999988876544321 123466789999999999999876 79999
Q ss_pred EEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 016118 219 TWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (395)
Q Consensus 219 Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~i 254 (395)
..+.+.||....-+-+|+|+ +|++++.++.+..++
T Consensus 102 a~vi~~Gr~~~v~~~~v~d~-~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 102 CQPLHLGRQNQSWEIVVFDE-QGRRCCTCRLGTAVL 136 (137)
T ss_pred EEEEecCcCEEEEEEEEEcC-CCCEEEEEEEEEEEe
Confidence 99999999888888999996 899999999887654
No 34
>PRK11688 hypothetical protein; Provisional
Probab=96.33 E-value=0.14 Score=45.55 Aligned_cols=111 Identities=11% Similarity=0.060 Sum_probs=76.5
Q ss_pred EEEEEeecccCC--CCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchH-HHhhCCceEEeEEeEEEEeecCCCCCEEE
Q 016118 140 RQNFSIRSYEIG--ADGTASIETLMNHLQETALNHVMTAGLLDAGFGATP-AMAKKNLIWVVTRMQVVVDRYPTWNDVVN 216 (395)
Q Consensus 140 ~~~~~VR~~D~D--~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~-~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~ 216 (395)
...++++-..++ +.|.+.=..++.++..+....+....... ..+... ........-+-++++++|.+|.+ |+.|+
T Consensus 40 ~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~-~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~ 117 (154)
T PRK11688 40 ELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILAR-HEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFT 117 (154)
T ss_pred EEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccc-cccccccccccccccceEEEEEEEeeccCC-CCeEE
Confidence 345667776675 57888888888888777654443221100 000000 00011223356799999999996 99999
Q ss_pred EEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 016118 217 VETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (395)
Q Consensus 217 I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~ 253 (395)
++.++.+.++..+.-+-+|+|. +|+++++++.+|..
T Consensus 118 a~a~v~~~g~r~~~~~~~i~~~-~g~lvA~a~~t~~v 153 (154)
T PRK11688 118 ATSSVLRAGNKVAVARMELHNE-QGVHIASGTATYLV 153 (154)
T ss_pred EEEEEEEccCCEEEEEEEEECC-CCCEEEEEEEEEEe
Confidence 9999999998777777899986 89999999999864
No 35
>PLN02864 enoyl-CoA hydratase
Probab=96.11 E-value=0.3 Score=48.75 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=47.8
Q ss_pred EeEEeEEEEeecCCCCCEEEEEEEEEEeC---C-cEEEEEEEEEECCCCcEEEEEEEEEEEEEc
Q 016118 197 VVTRMQVVVDRYPTWNDVVNVETWVSASG---K-NGMRRDWLIRNAKTGETLTRATSLWVMMNK 256 (395)
Q Consensus 197 VV~r~~Ie~~r~P~~gD~V~I~Twv~~~~---k-~~~~R~f~I~d~~~Gevia~A~S~wV~iD~ 256 (395)
|=.+..|+++||...++++++++++..+. + .....+..+.+..+|+++++..++.++-..
T Consensus 95 VHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 95 LHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGA 158 (310)
T ss_pred eeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCC
Confidence 34578899999999999999999999872 2 224666777785589999999988887653
No 36
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=96.01 E-value=0.069 Score=39.57 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=56.4
Q ss_pred CchhHHhhhccccChhhhc------cCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEE
Q 016118 296 STADYVRRGLTSAPQQILE------SHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEV 369 (395)
Q Consensus 296 NNa~Yi~w~ld~lp~e~l~------~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei 369 (395)
|+..|+.|+......-+.. ...+.++.+.|++++.+||.+.....+...+ .......+.+..++|.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 92 (100)
T cd03440 19 HGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVG------RSSVTVEVEVRNEDGKLV 92 (100)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEecc------ccEEEEEEEEECCCCCEE
Confidence 7899999988766544332 4578999999999999999999998886622 233455556666668999
Q ss_pred EEEEEEE
Q 016118 370 LRARTEW 376 (395)
Q Consensus 370 ~rart~W 376 (395)
+.++..|
T Consensus 93 ~~~~~~~ 99 (100)
T cd03440 93 ATATATF 99 (100)
T ss_pred EEEEEEe
Confidence 9987765
No 37
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=95.85 E-value=0.11 Score=46.33 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=81.4
Q ss_pred EEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEE
Q 016118 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVE 218 (395)
Q Consensus 139 f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~ 218 (395)
-+-+++|.-..+++++.+.-.....+.+..+..-+- +.+....-|-+.++|.|..+...||.|.|+
T Consensus 39 v~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~--------------~~~~~~~gvsvdLsvsyL~~AklGe~l~i~ 104 (148)
T KOG3328|consen 39 VSCELKVTPDHLNRFKTLHGGATATLVDLITSAALL--------------MTSGFKPGVSVDLSVSYLSSAKLGEELEIE 104 (148)
T ss_pred EEEEEEeCHHHcCccccccccchhhHHHHHhhHHHH--------------hccCCCCceEEEEEhhhccccCCCCeEEEE
Confidence 345899999999999999998888877777654322 122233467789999999999999999999
Q ss_pred EEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 016118 219 TWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (395)
Q Consensus 219 Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~ 253 (395)
..+.+.||....-+-+++...+|++++.++-+-.+
T Consensus 105 a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~ 139 (148)
T KOG3328|consen 105 ATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYF 139 (148)
T ss_pred EEEeecCceEEEEEEEEEEcCCCeEEEecceEEEe
Confidence 99999999888888888887679999998865544
No 38
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.84 E-value=0.38 Score=42.00 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=82.9
Q ss_pred EEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEE
Q 016118 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVE 218 (395)
Q Consensus 139 f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~ 218 (395)
-+..+.+.-....+.|.++=..++.+++.++...+.... .....-+-+.++++|.||.+-|+ |+.+
T Consensus 36 ~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~-------------~~~~~~~ti~l~i~flr~~~~g~-v~a~ 101 (141)
T COG2050 36 AEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLL-------------GVVALAVTLELNINFLRPVKEGD-VTAE 101 (141)
T ss_pred EEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhcc-------------CccceeEEEEEEehhccCCCCCe-EEEE
Confidence 345667777777888999999999999988776665432 11112277899999999999999 9999
Q ss_pred EEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEc
Q 016118 219 TWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNK 256 (395)
Q Consensus 219 Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~ 256 (395)
..+.+.|+.-...+-++++.+.|++++.++.++..++.
T Consensus 102 a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~ 139 (141)
T COG2050 102 ARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRK 139 (141)
T ss_pred EEEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecC
Confidence 99999999888788899964466999999999998874
No 39
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=95.76 E-value=0.13 Score=43.15 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=46.5
Q ss_pred eEEeEEeEEEEeecCCCCCEEEEEEEEEEeCC--cEEEEEEEEEECCCCcEEEEEEEEE
Q 016118 195 IWVVTRMQVVVDRYPTWNDVVNVETWVSASGK--NGMRRDWLIRNAKTGETLTRATSLW 251 (395)
Q Consensus 195 ~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k--~~~~R~f~I~d~~~Gevia~A~S~w 251 (395)
..+....+++|.+|...||+|+++.++.+... ..+.....+++. +|+++++++.+.
T Consensus 69 ~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~-~g~~v~~g~~~~ 126 (128)
T cd03449 69 GTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ-NGEVVIEGEAVV 126 (128)
T ss_pred eEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeC-CCCEEEEEEEEE
Confidence 56677899999999999999999999998754 455666788885 799999998654
No 40
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=95.63 E-value=0.046 Score=41.79 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=49.7
Q ss_pred CchhHHhhhccccChh---hh---ccCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEE
Q 016118 296 STADYVRRGLTSAPQQ---IL---ESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEV 369 (395)
Q Consensus 296 NNa~Yi~w~ld~lp~e---~l---~~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei 369 (395)
||..|+.|+.++.-.- .. ....+.++.|+|+++++.||.+....++... +.......+.++.+++.++
T Consensus 5 ~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~------g~~~~~~~~~v~~~~~~~~ 78 (79)
T PF03061_consen 5 HGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRV------GRKSFTVEVEVYSEDGRLC 78 (79)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEE------ESSEEEEEEEEEETTSCEE
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEE------CCEEEEEEEEEEECCCcEE
Confidence 6778888876643211 11 3346889999999999999999999888662 2355677888998888777
Q ss_pred E
Q 016118 370 L 370 (395)
Q Consensus 370 ~ 370 (395)
|
T Consensus 79 ~ 79 (79)
T PF03061_consen 79 A 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 41
>PLN02322 acyl-CoA thioesterase
Probab=94.69 E-value=1.9 Score=38.87 Aligned_cols=103 Identities=7% Similarity=-0.114 Sum_probs=78.5
Q ss_pred EEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEE
Q 016118 139 FRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVE 218 (395)
Q Consensus 139 f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~ 218 (395)
.+.+..|+-..+.+.|.++=..++.+++.|+. ..... ...+...+-+.+.++|.+|.+.||.|..+
T Consensus 28 ~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g-~A~~~-------------~~~~~~~vTiel~infLrpa~~G~~L~Ae 93 (154)
T PLN02322 28 VTGRLPVSPMCCQPFKVLHGGVSALIAESLAS-LGAHM-------------ASGFKRVAGIQLSINHLKSADLGDLVFAE 93 (154)
T ss_pred EEEEEECCHHHcCCCCCccHHHHHHHHHHHHH-HHHhh-------------ccCCCceEEEEEEEEEeccCCCCCEEEEE
Confidence 34567777778999999999999998876543 22111 11223467899999999999999999999
Q ss_pred EEEEEeCCcEEEEEEEEEECC-----CCcEEEEEEEEEEEEE
Q 016118 219 TWVSASGKNGMRRDWLIRNAK-----TGETLTRATSLWVMMN 255 (395)
Q Consensus 219 Twv~~~~k~~~~R~f~I~d~~-----~Gevia~A~S~wV~iD 255 (395)
-.+...|+....-+-+|++.. +|++++.++.+..++.
T Consensus 94 a~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~~ 135 (154)
T PLN02322 94 ATPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICNL 135 (154)
T ss_pred EEEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEcc
Confidence 999999998777788898831 2788999998776553
No 42
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=94.03 E-value=0.43 Score=40.48 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=44.4
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEeCCc-EEEEEEEEEECCCCcEEEEEEEEE
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKN-GMRRDWLIRNAKTGETLTRATSLW 251 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~-~~~R~f~I~d~~~Gevia~A~S~w 251 (395)
..+.+++++|.+|...||+|+++.++.+.... .+....++.|+ +|+++++++.+.
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq-~G~~v~~g~a~v 122 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNS-EGDHVMAGTATV 122 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcC-CCCEEEeEEEEE
Confidence 44567899999999999999999999876432 55667888885 899998887653
No 43
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=94.03 E-value=1.2 Score=37.58 Aligned_cols=81 Identities=9% Similarity=-0.013 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCC
Q 016118 161 LMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKT 240 (395)
Q Consensus 161 ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~ 240 (395)
.+.++-+++..+....+. . ...+..+.+.--+++|.+|+..||++++++++...+.........++. +
T Consensus 50 ~iE~~aQ~~~~~~~~~~~---------~-~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~~--~ 117 (131)
T cd01288 50 IIEALAQAAGILGLKSLE---------D-FEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYV--D 117 (131)
T ss_pred HHHHHHHHHHHHhhhccc---------c-cCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--C
Confidence 556666666655432110 0 123345555558999999999999999999999887666656667754 7
Q ss_pred CcEEEEEEEEEEE
Q 016118 241 GETLTRATSLWVM 253 (395)
Q Consensus 241 Gevia~A~S~wV~ 253 (395)
|+++++|+-+.+.
T Consensus 118 g~~v~~~~~~~~~ 130 (131)
T cd01288 118 GKLVAEAELMFAI 130 (131)
T ss_pred CEEEEEEEEEEEE
Confidence 9999999887764
No 44
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=93.73 E-value=0.39 Score=38.34 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=51.5
Q ss_pred ceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 194 l~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
..-+...+++.|.+++..++.+..+.++...++....++-.|++. +|++++.+.....
T Consensus 41 ~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~-~G~lva~~~~~~~ 98 (99)
T cd00556 41 SGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-DGKLVASATQSFL 98 (99)
T ss_pred CCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECC-CCcEEEEEEEeEc
Confidence 345778999999999999999999999999999999899999985 7999999987653
No 45
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=93.68 E-value=0.82 Score=41.55 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=51.9
Q ss_pred EeEEeEEEEeecCCCCCEEEEEEEEEEeC----CcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCCH
Q 016118 197 VVTRMQVVVDRYPTWNDVVNVETWVSASG----KNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPD 266 (395)
Q Consensus 197 VV~r~~Ie~~r~P~~gD~V~I~Twv~~~~----k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP~ 266 (395)
+-...+++|.+|.+.||+|+++..+.... +-.+.....++|+ +|++++++..+++.-+.++.-..+...
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ-~Ge~V~~~~~~~~~~~~~~~~~~~~~~ 157 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTND-DGELVMEAYTTLMGQQGDNSASLKWDK 157 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECC-CCCEEEEEEEEEEEecCCCceeeccCc
Confidence 33457888999999999999999998762 2345666788885 899999999888777655544444443
No 46
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=93.47 E-value=0.57 Score=47.54 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=83.4
Q ss_pred CeeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEE
Q 016118 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVV 215 (395)
Q Consensus 136 ~~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V 215 (395)
+..+...++|...-++..|.+++..+-.++.++....+.. .++--.++-++.+-|.+|....+.+
T Consensus 330 ~~~~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k---------------~~~~niiIE~i~iyflk~vqid~~l 394 (432)
T COG4109 330 GDEYGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRK---------------KKKRNIIIENITIYFLKPVQIDSVL 394 (432)
T ss_pred ccccceEEEechhhccccccchHHHHHHHHHHHHHHHHHH---------------hcCCceEEEeeeeeeecceecccEE
Confidence 4445566889999999999999999999999997766643 2233467889999999999999999
Q ss_pred EEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 216 NVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 216 ~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
+|...+...+|.+...+.+|+. +|++++.|-...=
T Consensus 395 ~I~prIl~~gR~~a~idvei~~--~~~ivaKAiv~~q 429 (432)
T COG4109 395 EIYPRILEEGRKFAKIDVEIYH--DGQIVAKAIVTVQ 429 (432)
T ss_pred EEeeeeeccccccceeEEEEee--Ccchhhhheeeee
Confidence 9999999999999999999997 5888888765443
No 47
>PLN02647 acyl-CoA thioesterase
Probab=93.02 E-value=3.6 Score=43.14 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=82.5
Q ss_pred eeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEE
Q 016118 137 FIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVN 216 (395)
Q Consensus 137 ~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~ 216 (395)
..-+..+.+...|.+..|+++=+.+|.++.++|.--+... ..+..-.+.=-.|+|.+|...||.|.
T Consensus 289 T~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~--------------a~~~~vt~svd~v~F~~PV~vGdil~ 354 (437)
T PLN02647 289 TRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAF--------------AGLRPYFLEVDHVDFLRPVDVGDFLR 354 (437)
T ss_pred cceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHH--------------cCCceEEEEecceEecCccccCcEEE
Confidence 3445667789999999999999999999999877444321 22333444556899999999999999
Q ss_pred EEEEEEEe-----CCcEEEEEEE--EEEC--CCCcEEEEEEEEEEEEEc-CCCcccCCCHH
Q 016118 217 VETWVSAS-----GKNGMRRDWL--IRNA--KTGETLTRATSLWVMMNK-LTRRLSKMPDE 267 (395)
Q Consensus 217 I~Twv~~~-----~k~~~~R~f~--I~d~--~~Gevia~A~S~wV~iD~-~tRRpvrIP~e 267 (395)
++..+... ++.++..+-. +.+. .+++++..+..++|..|- ..++|+++|+.
T Consensus 355 l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~~~~g~p~~Vp~V 415 (437)
T PLN02647 355 FKSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPEAAMKNGFKIRNV 415 (437)
T ss_pred EEEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEeccccCCCCccCCee
Confidence 87655544 3444433323 2332 245678899999999886 36788888754
No 48
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=92.98 E-value=0.96 Score=37.35 Aligned_cols=86 Identities=14% Similarity=-0.016 Sum_probs=56.6
Q ss_pred CCCCCCC----CchhHHhhhccccChhhh--cc--CceEEE-EEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEE
Q 016118 289 KLPKLGD----STADYVRRGLTSAPQQIL--ES--HQLASV-TLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQH 359 (395)
Q Consensus 289 k~sdlD~----NNa~Yi~w~ld~lp~e~l--~~--~~l~~i-~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H 359 (395)
+..++|. ++..|+.|+-++.-.-.. .. .....+ +++|++++..||+|.+...+...+ ...+.+..
T Consensus 15 ~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g------~~~~~~~~ 88 (123)
T cd03442 15 LPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTG------RTSMEVGV 88 (123)
T ss_pred CCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEec------CCeEEEEE
Confidence 3445555 788888887664321111 11 234456 699999999999999888876521 23445555
Q ss_pred EEEcCC-----CcEEEEEEEEEEEcC
Q 016118 360 LLRLEE-----GAEVLRARTEWRPKD 380 (395)
Q Consensus 360 ~ir~ed-----G~ei~rart~W~~k~ 380 (395)
.++.++ ++.+++|++.+...+
T Consensus 89 ~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 89 EVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred EEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 555543 468999999999875
No 49
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=92.97 E-value=1.7 Score=37.70 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=66.1
Q ss_pred eEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEE
Q 016118 138 IFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNV 217 (395)
Q Consensus 138 ~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I 217 (395)
.....++.++.--+..|.++-.+++...+-+....+... + ..+..|++..++|+|.+|.+ ..|+.
T Consensus 30 ~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~------------l-~~~~~~~~k~~~i~f~kpa~--g~v~a 94 (132)
T PF14539_consen 30 RVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSN------------L-GDKYRVWDKSAEIDFLKPAR--GDVTA 94 (132)
T ss_dssp EEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHH------------S--TTEEEEEEEEEEEE-S-----S-EEE
T ss_pred EEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHh------------C-CCcEEEEEEeeEEEEEeccC--CcEEE
Confidence 455677788888999999999999999999987666431 1 22677889999999999966 34555
Q ss_pred EEEEEE--eC-CcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 218 ETWVSA--SG-KNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 218 ~Twv~~--~~-k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
+..+.. .+ +......-.|+|. +|++++++.-+|.
T Consensus 95 ~~~~~~e~~~~~~~~~~~v~i~D~-~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 95 TAELTEEQIGERGELTVPVEITDA-DGEVVAEATITWY 131 (132)
T ss_dssp EEE-TCCHCCHEEEEEEEEEEEET-TC-EEEEEEEEEE
T ss_pred EEEcCHHHhCCCcEEEEEEEEEEC-CCCEEEEEEEEEE
Confidence 555443 33 4455566788896 9999999999984
No 50
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=92.79 E-value=1.1 Score=37.20 Aligned_cols=56 Identities=16% Similarity=-0.072 Sum_probs=45.3
Q ss_pred ceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCC----cEEEEEEEEEECCCCcEEEEEEEE
Q 016118 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGK----NGMRRDWLIRNAKTGETLTRATSL 250 (395)
Q Consensus 194 l~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k----~~~~R~f~I~d~~~Gevia~A~S~ 250 (395)
..+++...+++|.+|...||+|+++.++..... ........+.+. +|+++..+...
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g~~v~~g~~~ 125 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQ-GGEVVLSGEAT 125 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeC-CCCEEEEEEEE
Confidence 457788999999999999999999999998743 345666778885 78988886643
No 51
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=92.35 E-value=1.6 Score=37.69 Aligned_cols=53 Identities=17% Similarity=-0.000 Sum_probs=42.6
Q ss_pred EeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCC-CcEEEEEEEE
Q 016118 197 VVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKT-GETLTRATSL 250 (395)
Q Consensus 197 VV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~-Gevia~A~S~ 250 (395)
.+.+++++|.+|...||+|+++.++.+...-....++.++++ + |+++.++..+
T Consensus 69 ~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq-~~g~~V~~g~~~ 122 (126)
T cd03447 69 RVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNE-ETGELVLRGEAE 122 (126)
T ss_pred eEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEEC-CCCCEEEEEEEE
Confidence 345679999999999999999999998754455667888886 6 8888887754
No 52
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=92.31 E-value=1.4 Score=39.65 Aligned_cols=60 Identities=7% Similarity=0.055 Sum_probs=47.7
Q ss_pred EEeEEEEeecCCCCCEEEEEEEEEEeC----CcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCC
Q 016118 199 TRMQVVVDRYPTWNDVVNVETWVSASG----KNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTR 259 (395)
Q Consensus 199 ~r~~Ie~~r~P~~gD~V~I~Twv~~~~----k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tR 259 (395)
...+++|.+|.+.||+|+++..+.... +-.+.....++|+ +|++++++.++.+.-..+..
T Consensus 87 ~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq-~Ge~V~~~~~~~~~r~~~~~ 150 (159)
T PRK13692 87 VDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNE-EGDVVQETYTTLAGRAGEDG 150 (159)
T ss_pred eeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcC-CCCEEEEEEEEEEEecCCcC
Confidence 347899999999999999999997552 2356667888885 89999999998887665543
No 53
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=92.26 E-value=7.2 Score=33.95 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=46.6
Q ss_pred eEEeEE-eEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEE
Q 016118 195 IWVVTR-MQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255 (395)
Q Consensus 195 ~WVV~r-~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD 255 (395)
..++.. -+++|.+|.+.||+|+++.++...++.....+..+.. +|++++++....++-|
T Consensus 87 ~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~~--~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 87 LVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVATV--DGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEEEc
Confidence 344445 4799999999999999999999876666566677764 7999999999887644
No 54
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=92.07 E-value=0.055 Score=49.93 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=91.2
Q ss_pred eecccCCCCC-CcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEEEE
Q 016118 145 IRSYEIGADG-TASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSA 223 (395)
Q Consensus 145 VR~~D~D~~G-~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~ 223 (395)
.-..|+|-.- |+||+.|+.=+.-|+.+|....|+- ..+...+..-|..--.+.|.|..+.-++..|.|.+..
T Consensus 57 cls~dlDtll~HmnNArYfrElDfAR~~~~~r~~l~-------~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sRiI~ 129 (213)
T KOG4366|consen 57 CLSTDLDTLLSHMNNARYFRELDFARVNFYCRTGLY-------LMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSRIIC 129 (213)
T ss_pred eecchHHHHHHHhhhhHHHHHhhHHHHHHHHHHhHH-------HHHHhcCCCeeechhhhhhhhhcCCCCccceeeEEEE
Confidence 3446667665 9999999999999999999988761 2366677777777788889999999999999999998
Q ss_pred eCC--cEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCCHHHHHhhccccCCCCCCCCc
Q 016118 224 SGK--NGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDE 285 (395)
Q Consensus 224 ~~k--~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP~ev~~~i~~y~~~~~p~i~~ 285 (395)
..- +++.-.|.+.. +|=+++-+.+..++.|. .++++..++-+...++.|.+++
T Consensus 130 WDekaiyle~rFv~~s--d~fvcala~~kq~l~dt-------s~~~v~~e~c~~~~e~~ae~pe 184 (213)
T KOG4366|consen 130 WDEKAIYLESRFVILS--DGFVCALALTKQVLKDT-------SKEKVALELCPRTNEKRAEIPE 184 (213)
T ss_pred Echhhhhhhhheeecc--CceEeehHHHHHHHhcC-------CHHHHHHHHhhhhccCcccCCh
Confidence 854 44444465553 79999999999999982 3444444444444444444443
No 55
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=91.82 E-value=0.91 Score=39.18 Aligned_cols=51 Identities=16% Similarity=-0.001 Sum_probs=41.6
Q ss_pred eEEEEeecCCCCCEEEEEEEEEEeC-------CcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 201 MQVVVDRYPTWNDVVNVETWVSASG-------KNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 201 ~~Ie~~r~P~~gD~V~I~Twv~~~~-------k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
.+++|.+|...||+|+++.++.+.. +-.+.....+.|+ +|++++++..+.+
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~~ 138 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQ-RGEVVLTFEATVL 138 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcC-CCCEEEEEEehhe
Confidence 4899999999999999999998763 2245667888885 8999999887654
No 56
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=91.80 E-value=1 Score=38.62 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=40.8
Q ss_pred eEEEEeecCCCCCEEEEEEEEEEeCC------cEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 201 MQVVVDRYPTWNDVVNVETWVSASGK------NGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 201 ~~Ie~~r~P~~gD~V~I~Twv~~~~k------~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
.+++|.+|.+.||+|+++.++.+... -.+.....++|+ +|++++++..+.+
T Consensus 83 ~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~l 139 (140)
T cd03446 83 DNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQ-RGEVVQSGEMSLL 139 (140)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcC-CCCEEEEEEEeee
Confidence 48999999999999999999987631 234556777885 8999999987764
No 57
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=91.76 E-value=1.4 Score=37.60 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=41.6
Q ss_pred eEEeEEEEeecCCCCCEEEEEEEEEEe----CCcEEEEEEEEEECCCCcEEEEEEEE
Q 016118 198 VTRMQVVVDRYPTWNDVVNVETWVSAS----GKNGMRRDWLIRNAKTGETLTRATSL 250 (395)
Q Consensus 198 V~r~~Ie~~r~P~~gD~V~I~Twv~~~----~k~~~~R~f~I~d~~~Gevia~A~S~ 250 (395)
+.++.++|.+|...||+|+++.++.+. ++-....+.+++++ +|+++..++.+
T Consensus 70 i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq-~g~~v~~g~a~ 125 (127)
T cd03453 70 VVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQ-AGGKKVLGRAI 125 (127)
T ss_pred eEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEc-CCCEEEEEEEE
Confidence 357889999999999999999999764 22345667888895 89988887754
No 58
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=91.54 E-value=1.5 Score=35.62 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=42.4
Q ss_pred CceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEE
Q 016118 316 HQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWR 377 (395)
Q Consensus 316 ~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~ 377 (395)
..+.+++|+|.+.+.. +.+.+..++...+ .....+...+..++|+++++|...|.
T Consensus 58 ~~~~~~~i~f~~p~~~-~~v~~~~~v~~~g------~~~~~~~~~~~~~~~~~~a~a~~~~~ 112 (113)
T cd03443 58 AVTVDLNVNYLRPARG-GDLTARARVVKLG------RRLAVVEVEVTDEDGKLVATARGTFA 112 (113)
T ss_pred eEEEEEEEeEEcCCCC-CeEEEEEEEEecC------ceEEEEEEEEECCCCCEEEEEEEEEe
Confidence 3678999999999999 8888888776521 13345556677767999999999986
No 59
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=91.17 E-value=9.1 Score=32.95 Aligned_cols=56 Identities=7% Similarity=-0.074 Sum_probs=44.1
Q ss_pred eEEeEE-eEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 195 IWVVTR-MQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 195 ~WVV~r-~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
...+.. -+++|.++.+.||++++..++..........+..++. +|+++++|+.+.+
T Consensus 83 ~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 83 LVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGEATV--DGKVVAEAEITFA 139 (140)
T ss_pred EEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 344555 5999999999999999999998776555555667754 7999999988765
No 60
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=90.80 E-value=1.4 Score=38.16 Aligned_cols=52 Identities=13% Similarity=-0.015 Sum_probs=41.4
Q ss_pred eEEEEeecCCCCCEEEEEEEEEEeCC-------cEEEEEEEEEECCCCcEEEEEEEEEEE
Q 016118 201 MQVVVDRYPTWNDVVNVETWVSASGK-------NGMRRDWLIRNAKTGETLTRATSLWVM 253 (395)
Q Consensus 201 ~~Ie~~r~P~~gD~V~I~Twv~~~~k-------~~~~R~f~I~d~~~Gevia~A~S~wV~ 253 (395)
.+++|.+|.+.||+|+++..+..... ..+.....+.++ +|+++++++.+.++
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~~ 142 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQ-DGEPVLSFERTALV 142 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECC-CCCEEEEEEehhEE
Confidence 48999999999999999999987632 244556677775 89999999976543
No 61
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=89.44 E-value=11 Score=31.35 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=61.2
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEE
Q 016118 154 GTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDW 233 (395)
Q Consensus 154 G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f 233 (395)
+.+--..++.++-+++..++...+... . .....+..+.--+++|.++.+.||+++++.++...+......+.
T Consensus 42 p~lPg~~~iE~~aQ~~~~~~~~~~~~~-------~-~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~ 113 (131)
T cd00493 42 PVMPGVLGIEAMAQAAAALAGLLGLGK-------G-NPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDG 113 (131)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhccccc-------c-cCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEE
Confidence 445666778888888887776543210 0 12233444555799999999999999999999988765556667
Q ss_pred EEEECCCCcEEEEEE
Q 016118 234 LIRNAKTGETLTRAT 248 (395)
Q Consensus 234 ~I~d~~~Gevia~A~ 248 (395)
.++. +|++++++.
T Consensus 114 ~~~~--~g~~v~~~~ 126 (131)
T cd00493 114 RAYV--DGKLVAEAE 126 (131)
T ss_pred EEEE--CCEEEEEEE
Confidence 7776 599999988
No 62
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=89.44 E-value=4.1 Score=37.58 Aligned_cols=59 Identities=10% Similarity=-0.065 Sum_probs=46.1
Q ss_pred CceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 016118 193 NLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (395)
Q Consensus 193 gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~ 253 (395)
+..-+....+++|.+|...||+|.++..+...++......-.++. +|+++++|..+.+.
T Consensus 123 ~~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 123 AELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred CcEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 444555667999999999999999999999877654444455553 79999999987765
No 63
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=89.42 E-value=1.6 Score=37.24 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=37.6
Q ss_pred eEEeEEeEEEEeecCCCCCEEEEEEEEEEeC-C------cEEEEEEEEEECCCCcEEEE
Q 016118 195 IWVVTRMQVVVDRYPTWNDVVNVETWVSASG-K------NGMRRDWLIRNAKTGETLTR 246 (395)
Q Consensus 195 ~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~-k------~~~~R~f~I~d~~~Gevia~ 246 (395)
.-+-...+++|++|++.||+|++++.+..+. | .+...+..++|. +|+++++
T Consensus 74 ~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~-~Ge~v~t 131 (132)
T PF13452_consen 74 RLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQ-DGELVAT 131 (132)
T ss_dssp GEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-C-TTEEEEE
T ss_pred hEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCEEEe
Confidence 4555789999999999999999999998762 1 234556788885 8999875
No 64
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=88.50 E-value=4.5 Score=33.71 Aligned_cols=54 Identities=19% Similarity=0.157 Sum_probs=40.9
Q ss_pred eEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceE-EEEEEEcCCCcEEEEEEEEEEE
Q 016118 318 LASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVE-CQHLLRLEEGAEVLRARTEWRP 378 (395)
Q Consensus 318 l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~-~~H~ir~edG~ei~rart~W~~ 378 (395)
-.+++|+|.+.+..||.|.....+...+ .... +.-.+.+++|++++.++-+|+.
T Consensus 59 t~~~~i~f~rp~~~G~~l~~~a~v~~~g-------~~~~~~~~~i~~~~~~~va~~~~t~~~ 113 (114)
T TIGR02286 59 AAQCTIDFLRPGRAGERLEAEAVEVSRG-------GRTGTYDVEVVNQEGELVALFRGTSRR 113 (114)
T ss_pred EEEEEEEEecCCCCCCEEEEEEEEEEeC-------CcEEEEEEEEEcCCCCEEEEEEEEEEE
Confidence 4678999999999999998887775421 2232 3335677889999999999975
No 65
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=87.74 E-value=4.1 Score=35.53 Aligned_cols=51 Identities=16% Similarity=0.024 Sum_probs=40.9
Q ss_pred eEEEEeecCCCCCEEEEEEEEEEeC--C----cEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 201 MQVVVDRYPTWNDVVNVETWVSASG--K----NGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 201 ~~Ie~~r~P~~gD~V~I~Twv~~~~--k----~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
.+++|.+|.+.||+|+++..+.... + -.+.....+.|+ +|++++++.....
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~ 137 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQ-NGELVASYDILTL 137 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEec-CCCEEEEEEehHe
Confidence 3999999999999999999998763 1 245667788885 8999999886544
No 66
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=87.24 E-value=4.6 Score=42.61 Aligned_cols=66 Identities=18% Similarity=0.077 Sum_probs=49.8
Q ss_pred eEEeEEeEEEEeecCCCCCEEEEEEEEEEe--CCcEEEEEEEEEECCCCcEEEEEEEEEEEEEcCCCcc
Q 016118 195 IWVVTRMQVVVDRYPTWNDVVNVETWVSAS--GKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRL 261 (395)
Q Consensus 195 ~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~--~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~~tRRp 261 (395)
+.+....+++|.+|.+.||+|+++.++... ++.......+++|+ +|++++.++.++++-...=.+|
T Consensus 82 ~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq-~G~~V~~g~~~~l~~~~~~~~~ 149 (466)
T PRK08190 82 GTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQ-DGEVVITGTAEVIAPTEKVRRP 149 (466)
T ss_pred ceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeC-CCCEEEEEEEEeeccccccccc
Confidence 345567899999999999999999999865 33455566777885 8999999988776554443334
No 67
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=86.99 E-value=5 Score=37.97 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=48.5
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEc
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNK 256 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~ 256 (395)
..+..++++|.++...+ .+++++...+.||.+..+.-+++. +|+++++|+..+.--+.
T Consensus 34 ~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q--~~~~~~~a~~~f~~~~~ 91 (255)
T PF13622_consen 34 FDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ--DGKVVATATASFGRPEP 91 (255)
T ss_dssp SEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE--TTEEEEEEEEEEE--TT
T ss_pred CceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE--CCcCEEEEEEEEccCcC
Confidence 78999999999999999 999999999999999999889986 68889888887665553
No 68
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=86.74 E-value=5 Score=33.45 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=40.1
Q ss_pred eEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEE
Q 016118 318 LASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTE 375 (395)
Q Consensus 318 l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~ 375 (395)
..+.+++|++.+..||+|.....+.... .+...+.+...+.+++|+.+++++..
T Consensus 72 ~~~~~~~f~~Pv~~gd~l~~~~~v~~~~----~~~~~v~~~~~~~~~~g~~v~~g~~~ 125 (128)
T cd03449 72 YLSQSLRFLRPVFIGDTVTATVTVTEKR----EDKKRVTLETVCTNQNGEVVIEGEAV 125 (128)
T ss_pred EEEEEEEECCCccCCCEEEEEEEEEEEe----cCCCEEEEEEEEEeCCCCEEEEEEEE
Confidence 4578999999999999999888775421 11134456666777789999999864
No 69
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=86.48 E-value=6.6 Score=32.03 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=47.5
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEE
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLW 251 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~w 251 (395)
..+..+++.|.+++..+..|++++....-||.+..|.-.+.. +|+++..+...+
T Consensus 39 ~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q--~g~~~~~a~~sf 92 (94)
T cd03445 39 RVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ--NGKVIFTATASF 92 (94)
T ss_pred CCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE--CCEEEEEEEEEE
Confidence 447799999999999999999999999999999999888875 699988887654
No 70
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=86.35 E-value=22 Score=31.04 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=66.7
Q ss_pred EEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEE
Q 016118 140 RQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVET 219 (395)
Q Consensus 140 ~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~T 219 (395)
+.+..++. +....|.++=..++..+..+....... -+ ... ..+..-|....+|+|.+|.+- + +.+..
T Consensus 25 ~v~~pl~~-n~N~~G~~hGG~l~tlad~a~~~~~~~-~~--------~~~-~~~~~~vt~~~~i~yl~P~~~-~-~~a~~ 91 (138)
T TIGR02447 25 RLSAPLAA-NINHHGTMFGGSLYTLATLSGWGLLWL-RL--------QEL-GIDGDIVIADSHIRYLAPVTG-D-PVANC 91 (138)
T ss_pred EEEeECCC-CcCCCCceehhHHHHHHHHHHHHHHHH-HH--------HHh-CCCCcEEEEEeeeEEcCCcCC-C-eEEEE
Confidence 34556666 489999999999999996553321210 00 011 112345778999999999974 3 55555
Q ss_pred EE-------------EEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 016118 220 WV-------------SASGKNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (395)
Q Consensus 220 wv-------------~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~i 254 (395)
.+ .+-+|.....+-+|++ +|+++++++.+++.+
T Consensus 92 ~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 92 EAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVAL 137 (138)
T ss_pred EcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 55 3446666666778886 689999999999875
No 71
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=81.65 E-value=11 Score=31.36 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=38.7
Q ss_pred ceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEE-EEEcCCCcEEEEEEEEEE
Q 016118 317 QLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQH-LLRLEEGAEVLRARTEWR 377 (395)
Q Consensus 317 ~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H-~ir~edG~ei~rart~W~ 377 (395)
.-.+++|+|.+.+..| .|.....+... | ..+.+.+ .+.+++|+++++++..+.
T Consensus 63 vt~~l~i~f~~p~~~g-~l~a~a~v~~~--g-----r~~~~~~~~i~~~~g~~va~~~~t~~ 116 (117)
T TIGR00369 63 VGLELNANHLRPAREG-KVRAIAQVVHL--G-----RQTGVAEIEIVDEQGRLCALSRGTTA 116 (117)
T ss_pred EEEEEEeeeccccCCC-EEEEEEEEEec--C-----ceEEEEEEEEECCCCCEEEEEEEEEc
Confidence 3468999999999999 78877766542 1 3333333 577788999999998763
No 72
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=81.23 E-value=9.1 Score=32.67 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=38.7
Q ss_pred EEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEE
Q 016118 322 TLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEW 376 (395)
Q Consensus 322 ~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W 376 (395)
++.|++-+..||+|.....+.........+.+.+.+...+++++|++++.++...
T Consensus 84 ~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~ 138 (140)
T cd03446 84 NLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGEMSL 138 (140)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEEEEEEEee
Confidence 8899999999999998887754221100112335566677888899999988754
No 73
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=79.98 E-value=11 Score=31.98 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=41.8
Q ss_pred cCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEE
Q 016118 315 SHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTE 375 (395)
Q Consensus 315 ~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~ 375 (395)
...+.++.+.|++-+..||+|.....+.+.... .+.+.+.+...+++++|.+++.++.+
T Consensus 67 ~~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~--~~~~~v~~~~~~~nq~g~~v~~g~a~ 125 (127)
T cd03453 67 PGRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVA--DGEDALTVTVDATDQAGGKKVLGRAI 125 (127)
T ss_pred ccceEEEEEEECCcCcCCCEEEEEEEEEEEEec--CCCcEEEEEEEEEEcCCCEEEEEEEE
Confidence 445678899999999999999988776542111 11233556667788889888887643
No 74
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=78.80 E-value=31 Score=29.63 Aligned_cols=102 Identities=16% Similarity=0.063 Sum_probs=62.8
Q ss_pred EEEEEEeecccCCCCCC------cCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCC
Q 016118 139 FRQNFSIRSYEIGADGT------ASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWN 212 (395)
Q Consensus 139 f~~~~~VR~~D~D~~G~------v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~g 212 (395)
-+-...|...|-=..|| +--.-+++.+.+++..++...+... +.+ ......+...--+++|.++...|
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~kF~~~v~Pg 100 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAE-GTG-----EARKVPFLAGIRNVKFRGPVYPG 100 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSS-SCC-----CCCEEEEEEEEEEEEE-S-B-TT
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccc-cCC-----CcceEEEeccccEEEECccEeCC
Confidence 34455555555434443 3333466777777776666554210 000 01134566777899999999999
Q ss_pred C-EEEEEEEEEE---eCCcEEEEEEEEEECCCCcEEEEEE
Q 016118 213 D-VVNVETWVSA---SGKNGMRRDWLIRNAKTGETLTRAT 248 (395)
Q Consensus 213 D-~V~I~Twv~~---~~k~~~~R~f~I~d~~~Gevia~A~ 248 (395)
| .++++..+.+ .....+..+..++. +|+.+++|.
T Consensus 101 ~~~l~~~v~i~~~~~~~~~~~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 101 DKTLRIEVEIKKIRRREGGMAIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp E-EEEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEEE
T ss_pred CcEEEEEEEEEEeecccCCEEEEEEEEEE--CCEEEEEEC
Confidence 9 9999999998 56666667778886 799998874
No 75
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=78.65 E-value=15 Score=30.83 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=42.3
Q ss_pred cCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEE
Q 016118 315 SHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTE 375 (395)
Q Consensus 315 ~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~ 375 (395)
...+.++++.|.+-+..||+|.....+.+... . ..+.+...+++++|..++.++.+
T Consensus 66 ~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~----~-~~v~~~~~~~nq~G~~v~~g~a~ 121 (123)
T cd03455 66 DARVKSFAFRLGAPLYAGDTLRFGGRVTAKRD----D-EVVTVELWARNSEGDHVMAGTAT 121 (123)
T ss_pred cceEEEEEEEeeccccCCCEEEEEEEEEeecc----C-cEEEEEEEEEcCCCCEEEeEEEE
Confidence 35678899999999999999999888765221 1 14456667888889888888754
No 76
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=73.81 E-value=30 Score=28.45 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=40.7
Q ss_pred cCceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEE
Q 016118 315 SHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRART 374 (395)
Q Consensus 315 ~~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart 374 (395)
...+...++.|++-++.||+|.....+...... .+.+.+.+.....+++|..++.++.
T Consensus 67 ~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~--~~~~~v~~~~~~~n~~g~~v~~g~~ 124 (127)
T cd03441 67 GANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPS--KGRGVVTVRTEARNQGGEVVLSGEA 124 (127)
T ss_pred cceeEEeEEEEeCCcCCCCEEEEEEEEEEeecc--CCCcEEEEEEEEEeCCCCEEEEEEE
Confidence 346788999999999999999998887652210 0113345566667777888887654
No 77
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=72.86 E-value=27 Score=29.92 Aligned_cols=53 Identities=23% Similarity=0.123 Sum_probs=38.8
Q ss_pred ceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCC-CcEEEEEEEE
Q 016118 317 QLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEE-GAEVLRARTE 375 (395)
Q Consensus 317 ~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~ed-G~ei~rart~ 375 (395)
.+.++++.|++-+..||+|.+..++.+.. ++...+...+.+++ |+.++.+...
T Consensus 69 ~~~~~~~rf~~PV~~gdtl~~~~~v~~~~------~~~~~~~~~~~nq~~g~~V~~g~~~ 122 (126)
T cd03447 69 RVRSFTASFVGMVLPNDELEVRLEHVGMV------DGRKVIKVEARNEETGELVLRGEAE 122 (126)
T ss_pred eEEEEEEEEcccCcCCCEEEEEEEEEEEe------CCeEEEEEEEEECCCCCEEEEEEEE
Confidence 55778999999999999999877765421 23345555666776 8888888754
No 78
>PRK11688 hypothetical protein; Provisional
Probab=70.98 E-value=29 Score=30.69 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=38.9
Q ss_pred eEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEE-EEEEEcCCCcEEEEEEEEEE
Q 016118 318 LASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVEC-QHLLRLEEGAEVLRARTEWR 377 (395)
Q Consensus 318 l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~-~H~ir~edG~ei~rart~W~ 377 (395)
-.+++|+|.+.+. |+.|.....+... | ..+.+ .-.+++++|+++++++-.|.
T Consensus 100 Ti~l~i~fl~p~~-g~~l~a~a~v~~~--g-----~r~~~~~~~i~~~~g~lvA~a~~t~~ 152 (154)
T PRK11688 100 TIDLRVDYLRPGR-GERFTATSSVLRA--G-----NKVAVARMELHNEQGVHIASGTATYL 152 (154)
T ss_pred EEEEEEEeeccCC-CCeEEEEEEEEEc--c-----CCEEEEEEEEECCCCCEEEEEEEEEE
Confidence 4689999999995 8888887777552 1 33433 33677788999999998875
No 79
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=70.68 E-value=15 Score=31.87 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=38.4
Q ss_pred EEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEE
Q 016118 322 TLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWR 377 (395)
Q Consensus 322 ~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~ 377 (395)
++.|++-++.||+|.+...+.+.........+.+.+...+.+++|++++.++...-
T Consensus 82 ~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~ 137 (142)
T cd03452 82 NLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVASYDILTL 137 (142)
T ss_pred eEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEEEEEehHe
Confidence 89999999999999988877553210001112345555677788999999886543
No 80
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=69.41 E-value=21 Score=34.30 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=48.5
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
..+..+++.|.+++..+..|++++...+-||.+..|.-.++. +|++++++...+.
T Consensus 44 ~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q--~g~~~~~a~asf~ 98 (271)
T TIGR00189 44 FIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ--HGKTIFTLQASFQ 98 (271)
T ss_pred CCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE--CCEEEEEEEEEcc
Confidence 346689999999999999999999999999999999888875 6899999887665
No 81
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=67.86 E-value=30 Score=30.90 Aligned_cols=58 Identities=12% Similarity=-0.089 Sum_probs=43.3
Q ss_pred eEEeEEeEEEEeecCCCCCEEEEEEEEEEeC-----CcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 016118 195 IWVVTRMQVVVDRYPTWNDVVNVETWVSASG-----KNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (395)
Q Consensus 195 ~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~-----k~~~~R~f~I~d~~~Gevia~A~S~wV~i 254 (395)
+-.+.-..++|.+|.+.||+|..++++.... +....| ....+. +|+....+...+++.
T Consensus 93 ~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~-~~~~~~-~g~~v~~~~~~~~~~ 155 (159)
T COG2030 93 GANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLR-LETVNQ-EGELVLTLEATVLVL 155 (159)
T ss_pred eeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEE-EEEEcc-CCcEEEEEEEeEeEe
Confidence 4456678899999999999999999998752 222233 455564 799888888877664
No 82
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=67.13 E-value=28 Score=31.20 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=39.1
Q ss_pred EEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEE
Q 016118 321 VTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWR 377 (395)
Q Consensus 321 i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~ 377 (395)
.++.|.+.++.||+|.....+.+.... .+-+-+.+.+.+++++|.+++.++..-.
T Consensus 89 q~~~f~~PV~~GDtL~~~~eV~~~~~~--~~~giv~~~~~v~Nq~Ge~V~~~~~~~~ 143 (159)
T PRK13692 89 QVLKFEKPIVAGDKLYCDVYVDSVREA--HGTQIIVTKNIVTNEEGDVVQETYTTLA 143 (159)
T ss_pred eEEEEeCCccCCCEEEEEEEEEEEEEc--CCceEEEEEEEEEcCCCCEEEEEEEEEE
Confidence 689999999999999888777532110 1123456677888888998887766644
No 83
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=66.30 E-value=63 Score=34.35 Aligned_cols=58 Identities=7% Similarity=-0.064 Sum_probs=43.0
Q ss_pred EEeEE-eEEEEeecCCCCCEEEEEEEEEE-eCCcEEEEEEEEEECCCCcEEEEEEEEEEEEE
Q 016118 196 WVVTR-MQVVVDRYPTWNDVVNVETWVSA-SGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255 (395)
Q Consensus 196 WVV~r-~~Ie~~r~P~~gD~V~I~Twv~~-~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD 255 (395)
..+.. -+++|.+|++.||+++++..+.. ..+.....+-.++. +|+++++|....++.+
T Consensus 402 g~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v~~ 461 (464)
T PRK13188 402 TYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQIVK 461 (464)
T ss_pred EEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEEec
Confidence 34455 49999999999999999999876 33333344455653 7999999998887653
No 84
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=66.26 E-value=29 Score=29.72 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=39.0
Q ss_pred EEEeccccCCCCeEEEEEEeecCccC-cccCCCceEEEEEEEcCCCcEEEEEEEEEE
Q 016118 322 TLEYRRECGRDSVLQSLTAVSDKDIG-NLVNLGSVECQHLLRLEEGAEVLRARTEWR 377 (395)
Q Consensus 322 ~I~Y~kE~~~Gd~l~s~t~~~~~~~~-~~~~~~~~~~~H~ir~edG~ei~rart~W~ 377 (395)
++.|++-++.||+|.....+.+.... +..+.+-+.+...+.+++|+.++.++....
T Consensus 85 ~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~ 141 (146)
T cd03451 85 EVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTAL 141 (146)
T ss_pred EEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEEEEEehhE
Confidence 89999999999999988777542110 001112345566777788999999987654
No 85
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=65.06 E-value=42 Score=30.41 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=42.4
Q ss_pred EEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEEEcCCC
Q 016118 321 VTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAH 382 (395)
Q Consensus 321 i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~~k~~~ 382 (395)
-+.+|.+-++.||+|.....+.+... ..+-+-+.+...+.+++|.+++.++..+.-.+..
T Consensus 89 q~~~f~rPV~~GDtL~~~~~V~~~~~--~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~~~~~ 148 (166)
T PRK13691 89 QRFVFHKPVLAGDKLWARMDIHSVDE--RFGADIVVTRNVCTNDDGELVMEAYTTLMGQQGD 148 (166)
T ss_pred eEEEEeCCcCCCCEEEEEEEEEEEEE--cCCCcEEEEEEEEECCCCCEEEEEEEEEEEecCC
Confidence 47889999999999998887754211 0111234556677888999999999887665443
No 86
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=63.54 E-value=42 Score=29.04 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=39.5
Q ss_pred eEEE-EEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEEEcC
Q 016118 318 LASV-TLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKD 380 (395)
Q Consensus 318 l~~i-~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~~k~ 380 (395)
+.++ +++|++.+..||+|.+...+.... .+.+.+...+. .+|+.+++|+.....+|
T Consensus 90 l~gi~~~kF~~pv~pGd~l~i~~~i~~~~------~~~v~~~~~~~-~~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 90 FAGIDKARFKRPVVPGDQLILEVELLKQR------RGIWKFKGVAT-VDGKLVAEAELMFAIRD 146 (147)
T ss_pred EeeeeEEEEccccCCCCEEEEEEEEEEee------CCEEEEEEEEE-ECCEEEEEEEEEEEEEc
Confidence 3444 699999999999999888775421 13344455554 37899999998876554
No 87
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=61.41 E-value=22 Score=30.65 Aligned_cols=55 Identities=16% Similarity=0.348 Sum_probs=30.5
Q ss_pred eEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEE
Q 016118 318 LASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWR 377 (395)
Q Consensus 318 l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~ 377 (395)
+++++|+|+|-.+-+ |.......+.+.+ ......+.-.+.+++|.++++++.+|.
T Consensus 77 ~k~~~i~f~kpa~g~--v~a~~~~~~e~~~---~~~~~~~~v~i~D~~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 77 DKSAEIDFLKPARGD--VTATAELTEEQIG---ERGELTVPVEITDADGEVVAEATITWY 131 (132)
T ss_dssp EEEEEEEE-S---S---EEEEEE-TCCHCC---HEEEEEEEEEEEETTC-EEEEEEEEEE
T ss_pred EEeeEEEEEeccCCc--EEEEEEcCHHHhC---CCcEEEEEEEEEECCCCEEEEEEEEEE
Confidence 699999999986543 4443433331111 112233344678889999999999994
No 88
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=61.00 E-value=1e+02 Score=27.48 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=47.2
Q ss_pred ceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEc
Q 016118 194 LIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNK 256 (395)
Q Consensus 194 l~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~iD~ 256 (395)
+...+.=-++.|.++...||.+.++......++..+........- +|+++++|+...+.++.
T Consensus 85 ~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~V-dg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 85 LGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVATV-DGKVVAEAELLFAGVEK 146 (147)
T ss_pred EEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEEE-CCEEEEEEEEEEEEeec
Confidence 566677788999999999999999999998874333332333333 79999999998887653
No 89
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=60.56 E-value=1.2e+02 Score=26.89 Aligned_cols=87 Identities=11% Similarity=-0.037 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCCCchHHHhh-CCceEEeEEeEEEEeecCCCCC-EEEEEEEEEEeCC----cEEEEE
Q 016118 159 ETLMNHLQETALNHVMTAGLLDAGFGATPAMAK-KNLIWVVTRMQVVVDRYPTWND-VVNVETWVSASGK----NGMRRD 232 (395)
Q Consensus 159 ~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~-~gl~WVV~r~~Ie~~r~P~~gD-~V~I~Twv~~~~k----~~~~R~ 232 (395)
.-+++.|-++...++-..|... .-.. ...+....--.++|+++...|| +++++..+.+.+. ..+.-+
T Consensus 55 ~L~iEamaQ~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~ 127 (150)
T cd01287 55 SLGLEAMIQLLQFYLIWLGLGT-------GVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIAD 127 (150)
T ss_pred HHHHHHHHHHHHHHHhhccccc-------ccCcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEE
Confidence 3456667666555543333210 0001 2234455556899999999999 8999999999863 555555
Q ss_pred EEEEECCCCcEEEEEEEEEEEE
Q 016118 233 WLIRNAKTGETLTRATSLWVMM 254 (395)
Q Consensus 233 f~I~d~~~Gevia~A~S~wV~i 254 (395)
-.++. +|+++++|...-|.+
T Consensus 128 ~~~~v--dg~~v~~a~~~~~~~ 147 (150)
T cd01287 128 ASLWV--DGLRIYEAKDIAVRL 147 (150)
T ss_pred EEEEE--CCEEEEEEEccEEEe
Confidence 56665 799999998776654
No 90
>PRK10293 acyl-CoA esterase; Provisional
Probab=59.19 E-value=76 Score=27.68 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=37.3
Q ss_pred eEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceE-EEEEEEcCCCcEEEEEEEEEEE
Q 016118 318 LASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVE-CQHLLRLEEGAEVLRARTEWRP 378 (395)
Q Consensus 318 l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~-~~H~ir~edG~ei~rart~W~~ 378 (395)
-.++.|+|.+-++.|. |.....+... | ..+. +.-.+++++|+.++.++..|..
T Consensus 82 Tiel~infl~p~~~g~-l~a~a~vv~~--G-----r~~~~~~~~v~d~~g~l~A~~~~t~~i 135 (136)
T PRK10293 82 GLEINANHVRSAREGR-VRGVCKPLHL--G-----SRHQVWQIEIFDEKGRLCCSSRLTTAI 135 (136)
T ss_pred EEEEEeEEecccCCce-EEEEEEEEec--C-----CCEEEEEEEEEeCCCCEEEEEEEEEEE
Confidence 4578899999999884 6655555431 1 3333 3346778889999999998864
No 91
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=58.82 E-value=55 Score=27.90 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=32.8
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEE
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRAT 248 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~ 248 (395)
-.+..+.++|.+|...||+|+++.|.. ++ ... |.+...++|+++..+.
T Consensus 70 ~~~~~~~~rF~~PV~~gDtl~~~~~~~--~~-~v~--~~~~~~~~g~~v~~g~ 117 (122)
T cd03448 70 ARFKAIKVRFSSPVFPGETLRTEMWKE--GN-RVI--FQTKVVERDVVVLSNG 117 (122)
T ss_pred ceeEEEEEEEcCCccCCCEEEEEEEEe--CC-EEE--EEEEEccCCcEEEECC
Confidence 346678999999999999999999854 33 232 4443323577655543
No 92
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=58.42 E-value=1.2e+02 Score=26.19 Aligned_cols=87 Identities=7% Similarity=-0.104 Sum_probs=57.4
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCC-CCEEEEEEEEEEeCC-cEEEE
Q 016118 154 GTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTW-NDVVNVETWVSASGK-NGMRR 231 (395)
Q Consensus 154 G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~-gD~V~I~Twv~~~~k-~~~~R 231 (395)
+.+--..++.+|-+++..+...... ..-.+..++..+.=-+++++++... ||+++|+.......+ .....
T Consensus 45 ~~~P~~l~iE~mAQa~a~~~g~~~~--------~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~ 116 (138)
T cd01289 45 GRLPAWVGIEYMAQAIAAHGGLLAR--------QQGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVF 116 (138)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHH--------hcCCCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEE
Confidence 5677778889998887766421110 0001223455555568999998655 999999998877653 44444
Q ss_pred EEEEEECCCCcEEEEEEEE
Q 016118 232 DWLIRNAKTGETLTRATSL 250 (395)
Q Consensus 232 ~f~I~d~~~Gevia~A~S~ 250 (395)
+-.++. +|+++++|+-.
T Consensus 117 ~~~~~v--~~~~va~a~l~ 133 (138)
T cd01289 117 ECTIED--QGGVLASGRLN 133 (138)
T ss_pred EEEEEE--CCEEEEEEEEE
Confidence 556665 68999999765
No 93
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=57.14 E-value=69 Score=26.39 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=44.9
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
-.-..+.|.|++++...|=+..+.+....+.-+..-.=.|+++ +|++++.+...-+
T Consensus 48 ~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~-~G~LvAs~~Q~~l 103 (104)
T cd03444 48 SASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTR-DGELVASVAQEGL 103 (104)
T ss_pred eEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECC-CCCEEEEEEEeee
Confidence 3566789999999998898888888888866666566789996 8999998876543
No 94
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=57.14 E-value=23 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.007 Sum_probs=26.8
Q ss_pred eEEeEEeEEEEeecCCCCCEEEEEEEEEEeCCc
Q 016118 195 IWVVTRMQVVVDRYPTWNDVVNVETWVSASGKN 227 (395)
Q Consensus 195 ~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~ 227 (395)
...+.+++++|.+|...||+|.++.++.+....
T Consensus 75 ~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~ 107 (122)
T PF01575_consen 75 PARLGRFNVRFRAPVFPGDTLTAEVEVTEKREG 107 (122)
T ss_dssp CEEEEEEEEEESS--BTTEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEeccccCCCEEEEEEEEEEEEEc
Confidence 577889999999999999999999999875433
No 95
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=56.67 E-value=51 Score=28.14 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=37.0
Q ss_pred EEEEeccccCCCCeEEEEEEeecCccC-cccCCCceEEEEEEEcCCCcEEEEEEEE
Q 016118 321 VTLEYRRECGRDSVLQSLTAVSDKDIG-NLVNLGSVECQHLLRLEEGAEVLRARTE 375 (395)
Q Consensus 321 i~I~Y~kE~~~Gd~l~s~t~~~~~~~~-~~~~~~~~~~~H~ir~edG~ei~rart~ 375 (395)
.+++|.+.+..||+|.+...+.+.... +..+.+-+.+...+.+++|++++.++..
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~ 136 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVVLTFEAT 136 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEEEEEEeh
Confidence 389999999999999988877542210 0011123445556777889998888754
No 96
>PRK10694 acyl-CoA esterase; Provisional
Probab=56.36 E-value=87 Score=27.22 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=41.4
Q ss_pred ceEEE-EEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcC----C--C--cEEEEEEEEEEEcCCC
Q 016118 317 QLASV-TLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLE----E--G--AEVLRARTEWRPKDAH 382 (395)
Q Consensus 317 ~l~~i-~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~e----d--G--~ei~rart~W~~k~~~ 382 (395)
...++ .|+|++-++.||.|.+...+...+ ..++++.+.+..+ + | ..++.|...+...|.+
T Consensus 55 vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g------~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~~ 123 (133)
T PRK10694 55 VTVRVEGMTFLRPVAVGDVVCCYARCVKTG------TTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVDPE 123 (133)
T ss_pred EEEEECceEECCCcccCcEEEEEEEEEEcc------CceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECCC
Confidence 45566 669999999999999988886632 2445555544421 1 2 3477899999888754
No 97
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=55.55 E-value=56 Score=32.11 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=49.1
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
.++..+++.|.+|...+..|+.++....-||++..|.-.++. +|++|..+...+-
T Consensus 55 ~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q--~g~~if~~~~sF~ 109 (286)
T PRK10526 55 RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQ--NGKPIFYMTASFQ 109 (286)
T ss_pred CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEE--CCEEEEEEEEEec
Confidence 478899999999999999999999999999999999888875 7999988887665
No 98
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=55.47 E-value=1.3e+02 Score=25.55 Aligned_cols=88 Identities=10% Similarity=0.237 Sum_probs=57.1
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEEEEeCC-----c
Q 016118 153 DGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGK-----N 227 (395)
Q Consensus 153 ~G~v~~~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k-----~ 227 (395)
.+|+..--+++-+-+++....... ++. ..+..+++..+.++|.++..+.-.+.|+..+..-.. .
T Consensus 40 ~dh~~gmll~Ea~RQa~~~~~h~~------~~v-----p~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~ 108 (132)
T PF03756_consen 40 GDHVPGMLLLEAARQAGIALAHRF------YGV-----PLDHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPR 108 (132)
T ss_pred CCccChHHHHHHHHHHHHHhhccc------cCC-----CCCceEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccc
Confidence 345555555555555544433321 121 224468999999999999888778888887764322 3
Q ss_pred EEEEEEEEEECCCCcEEEEEEEEEEE
Q 016118 228 GMRRDWLIRNAKTGETLTRATSLWVM 253 (395)
Q Consensus 228 ~~~R~f~I~d~~~Gevia~A~S~wV~ 253 (395)
.+.....|.. +|+++++++..+-|
T Consensus 109 ~~~~~v~~~q--~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 109 GLRFRVTVSQ--GGRVVATASMTFTC 132 (132)
T ss_pred eEEEEEEEEE--CCEEEEEEEEEEEC
Confidence 4455566765 79999999988753
No 99
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=52.95 E-value=68 Score=26.66 Aligned_cols=51 Identities=12% Similarity=0.013 Sum_probs=35.8
Q ss_pred EEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEE
Q 016118 319 ASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEW 376 (395)
Q Consensus 319 ~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W 376 (395)
..-+++|++-+..||++.+...+.... .+...+.-.+. .+|+.+++|+...
T Consensus 78 ~~~~~kf~~pv~pgd~l~i~~~v~~~~------~~~~~~~~~~~-~~g~~v~~~~~~~ 128 (131)
T cd01288 78 GIDKARFRKPVVPGDQLILEVELLKLR------RGIGKFKGKAY-VDGKLVAEAELMF 128 (131)
T ss_pred eecccEEccccCCCCEEEEEEEEEEee------CCEEEEEEEEE-ECCEEEEEEEEEE
Confidence 346789999999999999888775521 13333344443 3688999998765
No 100
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=50.43 E-value=69 Score=29.42 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=36.0
Q ss_pred EEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEEE
Q 016118 319 ASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRP 378 (395)
Q Consensus 319 ~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~~ 378 (395)
..-++.|++.+.+||+|.....+.... .....+.-.+. .+|+.+|+|+.....
T Consensus 129 ~i~~irF~kPV~pGD~L~~ea~v~~~~------~~~~~v~~~~~-v~g~~V~ege~~~~~ 181 (185)
T PRK04424 129 GVANIRFKRPVKLGERVVAKAEVVRKK------GNKYIVEVKSY-VGDELVFRGKFIMYR 181 (185)
T ss_pred EeeeEEEccCCCCCCEEEEEEEEEEcc------CCEEEEEEEEE-ECCEEEEEEEEEEEE
Confidence 345899999999999999988876522 11122222233 478999999887643
No 101
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=49.06 E-value=90 Score=26.64 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=35.6
Q ss_pred eEEE-EEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEE
Q 016118 318 LASV-TLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEW 376 (395)
Q Consensus 318 l~~i-~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W 376 (395)
+.++ +++|++.+..||+|.+...+.... .+...+.-.+. .+|+.+|+|+...
T Consensus 86 l~~~~~~kF~~~v~pGd~l~i~~~i~~~~------~~~~~~~~~~~-~~g~~va~~~~~~ 138 (140)
T TIGR01750 86 FAGIDKAKFRRPVVPGDQLILHAEFLKKR------RKIGKFKGEAT-VDGKVVAEAEITF 138 (140)
T ss_pred EeecceeEECCccCCCCEEEEEEEEEEcc------CCEEEEEEEEE-ECCEEEEEEEEEE
Confidence 4443 889999999999999887765421 12233333443 3789999998764
No 102
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=47.80 E-value=1e+02 Score=32.54 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=41.4
Q ss_pred eEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEEE
Q 016118 318 LASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRP 378 (395)
Q Consensus 318 l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~~ 378 (395)
..+.+++|.+-++.||+|....++.+.. .+.+.+.+.....+++|+.++.++.++..
T Consensus 85 ~~~~~~rF~~PV~~GDtl~~~~~V~~~~----~~~~~v~~~~~~~nq~G~~V~~g~~~~l~ 141 (466)
T PRK08190 85 YLGQSLRFRRPVRIGDTLTVTVTVREKD----PEKRIVVLDCRCTNQDGEVVITGTAEVIA 141 (466)
T ss_pred EEEEEEEEeCCcCCCCEEEEEEEEEEEE----CCCCEEEEEEEEEeCCCCEEEEEEEEeec
Confidence 4568999999999999999888775422 11233445556677889999998877654
No 103
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=45.46 E-value=2e+02 Score=25.38 Aligned_cols=29 Identities=7% Similarity=-0.274 Sum_probs=24.3
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEe
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSAS 224 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~ 224 (395)
..+...+++|.+|.+.||+|+++..+...
T Consensus 85 ~~~g~~~~rF~~PV~~GDtl~~~~~V~~~ 113 (149)
T cd03450 85 VNYGLDKVRFPAPVPVGSRVRGRFTLLSV 113 (149)
T ss_pred EEeeccEEEeCcceeCCcEEEEEEEEEEE
Confidence 34445689999999999999999999875
No 104
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.26 E-value=1.5e+02 Score=25.56 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=37.5
Q ss_pred EEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEE-EEEc-CCCcEEEEEEEEEEEcC
Q 016118 319 ASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQH-LLRL-EEGAEVLRARTEWRPKD 380 (395)
Q Consensus 319 ~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H-~ir~-edG~ei~rart~W~~k~ 380 (395)
.++.|+|.+-++.|+ +.....+... | ......+ .+.. ++|+.+|+++..|...+
T Consensus 83 i~l~i~flr~~~~g~-v~a~a~v~~~--G-----~~~~v~~i~v~~~~~~~lva~~~~t~~v~~ 138 (141)
T COG2050 83 LELNINFLRPVKEGD-VTAEARVLHL--G-----RRVAVVEIEVKNDEGGRLVAKGTGTYAVLR 138 (141)
T ss_pred EEEEehhccCCCCCe-EEEEEEEEee--C-----CEEEEEEEEEEECCCCeEEEEEEEEEEEec
Confidence 478899999999999 6666665441 1 3333333 4553 44689999999987654
No 105
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=43.95 E-value=68 Score=35.53 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=39.5
Q ss_pred eEEEEeecCCCCCEEEEEEEEEEeC--C---c-EEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 201 MQVVVDRYPTWNDVVNVETWVSASG--K---N-GMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 201 ~~Ie~~r~P~~gD~V~I~Twv~~~~--k---~-~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
.+++|.+|.+.||+|+++..+.... + . .+..+..++++ +|+++.++.....
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq-~G~~Vl~~~~~~l 660 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQ-NGEPVATYDVLTL 660 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcC-CCCEEEEEEEHHh
Confidence 4899999999999999999998652 1 1 35566778885 8999888876543
No 106
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=43.84 E-value=72 Score=35.33 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=39.1
Q ss_pred EEEEeecCCCCCEEEEEEEEEEeC--C----cEEEEEEEEEECCCCcEEEEEEEEE
Q 016118 202 QVVVDRYPTWNDVVNVETWVSASG--K----NGMRRDWLIRNAKTGETLTRATSLW 251 (395)
Q Consensus 202 ~Ie~~r~P~~gD~V~I~Twv~~~~--k----~~~~R~f~I~d~~~Gevia~A~S~w 251 (395)
+++|.+|.+.||+|+++..+.... + -.+..+..+.++ +|+++.++....
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~G~~V~~~~~~~ 671 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQ-DGELVATYDILT 671 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEEC-CCCEEEEEEEHH
Confidence 789999999999999999999762 1 245667788885 899988887543
No 107
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=41.90 E-value=66 Score=27.06 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=32.1
Q ss_pred EEEEEEeccccCCCCeEEEEEEeecCccCcccCCCc-eEEEEEEEcCCCcEEEE
Q 016118 319 ASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGS-VECQHLLRLEEGAEVLR 371 (395)
Q Consensus 319 ~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~-~~~~H~ir~edG~ei~r 371 (395)
.+.+++|.+.++.||+|.+.+.+.+...-.+.+... +.....+++++|+.++.
T Consensus 78 ~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v~t 131 (132)
T PF13452_consen 78 GEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELVAT 131 (132)
T ss_dssp EEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEEEE
T ss_pred cCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEEEe
Confidence 578999999999999999888775422100011122 23455677788888774
No 108
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=38.63 E-value=2.6e+02 Score=26.17 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=39.5
Q ss_pred eEEeEEEEeecC-CCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 198 VTRMQVVVDRYP-TWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 198 V~r~~Ie~~r~P-~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
-..+.|.|++.| .-+|=+.++++....+.-.+.-+=.|+|+ +|+++|.+...-+
T Consensus 200 tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d~-~G~lvA~~~Q~~l 254 (255)
T PF13622_consen 200 TLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWDE-DGRLVASSRQEAL 254 (255)
T ss_dssp EEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEET-TS-EEEEEEEEEE
T ss_pred cceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEECC-CCCEEEEEEEEee
Confidence 567788875544 45888999998887766556567889996 8999999987654
No 109
>PRK10254 thioesterase; Provisional
Probab=37.20 E-value=2.1e+02 Score=25.02 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=35.9
Q ss_pred ceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceE-EEEEEEcCCCcEEEEEEEEEE
Q 016118 317 QLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVE-CQHLLRLEEGAEVLRARTEWR 377 (395)
Q Consensus 317 ~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~-~~H~ir~edG~ei~rart~W~ 377 (395)
.-.++.|+|.+-+..| .|.....+... | ..+. +.-.+++++|+.+|.++..-.
T Consensus 81 vTiel~in~Lrp~~~g-~l~a~a~vi~~--G-----r~~~v~~~~v~d~~g~l~a~~~~t~~ 134 (137)
T PRK10254 81 VGTELNATHHRPVSEG-KVRGVCQPLHL--G-----RQNQSWEIVVFDEQGRRCCTCRLGTA 134 (137)
T ss_pred EEEEEEeEEeccCcCC-eEEEEEEEEec--C-----cCEEEEEEEEEcCCCCEEEEEEEEEE
Confidence 4456778899999888 56665555441 1 3333 333677888999999887654
No 110
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=36.78 E-value=2.9e+02 Score=24.08 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=35.0
Q ss_pred EEeEEEEeecCCCC-C----EEEEEEEEEEeC--CcEEEEEEEEEECCCCcEEEEEEEE
Q 016118 199 TRMQVVVDRYPTWN-D----VVNVETWVSASG--KNGMRRDWLIRNAKTGETLTRATSL 250 (395)
Q Consensus 199 ~r~~Ie~~r~P~~g-D----~V~I~Twv~~~~--k~~~~R~f~I~d~~~Gevia~A~S~ 250 (395)
.++.++|.+|...| | +++++..+.... +........+.+. +++++++|..+
T Consensus 81 ~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~ 138 (142)
T PRK13693 81 TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTG-GKKIFGRAIAS 138 (142)
T ss_pred EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEEC-CcEEEEEEEEE
Confidence 47899999999864 3 888888888763 3345555666653 55566666554
No 111
>PLN02864 enoyl-CoA hydratase
Probab=36.55 E-value=2e+02 Score=28.74 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=34.8
Q ss_pred EeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEE
Q 016118 197 VVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLW 251 (395)
Q Consensus 197 VV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~w 251 (395)
.+.+++++|.+|...||+|.++.|.. ++ ... |.+...++|+++..+....
T Consensus 254 ~~~~~~~rF~~PV~pGdtl~~~~~~~--~~-~v~--~~~~~~~~g~~vl~G~a~~ 303 (310)
T PLN02864 254 AVKTISGRFLLHVYPGETLVTEMWLE--GL-RVI--YQTKVKERNKAVLSGYVDL 303 (310)
T ss_pred eEEEEEEEEcCCccCCCEEEEEEEeC--CC-EEE--EEEEEecCCeEEEEEEEEE
Confidence 45678999999999999999999864 22 222 3333223788777776543
No 112
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=36.01 E-value=2.4e+02 Score=24.90 Aligned_cols=53 Identities=8% Similarity=-0.139 Sum_probs=35.3
Q ss_pred eEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEE-ECCCCcEEEEEEEEE
Q 016118 198 VTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIR-NAKTGETLTRATSLW 251 (395)
Q Consensus 198 V~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~-d~~~Gevia~A~S~w 251 (395)
-....|=|+|+++.+|-+.-.+...........++=.++ + ++|++++.+...-
T Consensus 77 SlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~-q~G~Lvas~~QEG 130 (131)
T PF02551_consen 77 SLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDT-QDGELVASVVQEG 130 (131)
T ss_dssp EEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEE-CTTEEEEEEEEEE
T ss_pred ecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEec-CCCCEEEEEecCC
Confidence 667888899999999998888877655444443445566 5 4899999977543
No 113
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=35.99 E-value=2.1e+02 Score=27.32 Aligned_cols=55 Identities=7% Similarity=-0.097 Sum_probs=41.1
Q ss_pred EeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 016118 197 VVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWV 252 (395)
Q Consensus 197 VV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV 252 (395)
.-..+.|.|+++...+|=+..+++....+.-...-+=.|+|. +|+++|.+...-+
T Consensus 215 aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d~-~G~lvAs~~Qe~l 269 (271)
T TIGR00189 215 ASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFTR-DGVLIASTVQEGL 269 (271)
T ss_pred EeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEECC-CCCEEEEEEeeee
Confidence 456788899998788998888888876643333334688996 9999998876544
No 114
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=33.75 E-value=2.1e+02 Score=23.44 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=32.9
Q ss_pred EEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEE
Q 016118 321 VTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRART 374 (395)
Q Consensus 321 i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart 374 (395)
-+++|++.+..||++.+...+...+ ++...+.-.+.. +|++++++++
T Consensus 81 ~~~kf~~~v~pgd~l~i~~~i~~~~------~~~~~~~~~~~~-~g~~v~~~~~ 127 (131)
T cd00493 81 RKVKFRGPVLPGDTLTLEVELLKVR------RGLGKFDGRAYV-DGKLVAEAEL 127 (131)
T ss_pred ceeEECCCcCCCCEEEEEEEEEEee------CCEEEEEEEEEE-CCEEEEEEEE
Confidence 4899999999999998887775421 123333334554 5889999884
No 115
>PLN02868 acyl-CoA thioesterase family protein
Probab=31.54 E-value=1.6e+02 Score=30.43 Aligned_cols=56 Identities=11% Similarity=-0.062 Sum_probs=47.1
Q ss_pred EEeEEeEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 016118 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVM 253 (395)
Q Consensus 196 WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~wV~ 253 (395)
..+..+++.|.++...+..|++++...+-||.+..|.-..+. +|++++.+...+..
T Consensus 181 ~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q--~g~~~~~~~~sf~~ 236 (413)
T PLN02868 181 KLVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQ--KGKVIFTLFASFQK 236 (413)
T ss_pred CCceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEE--CCeeEEEEeecccc
Confidence 347789999999998888999999999999999999888875 68988888766543
No 116
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=30.00 E-value=2.8e+02 Score=24.71 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=36.5
Q ss_pred eEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEEEc
Q 016118 318 LASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPK 379 (395)
Q Consensus 318 l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~~k 379 (395)
..--+..|++.+.+||.+.+........ ...+....-...-||+++|.|+.....+
T Consensus 89 ~gid~~kF~~~V~PGd~l~l~~~~~~~~------~~~~~~~~~~a~Vdg~~v~~a~~~~~~~ 144 (147)
T COG0764 89 LGIDNAKFKRPVLPGDQLELEVKLLKSR------RLGIGKAKGVATVDGKVVAEAELLFAGV 144 (147)
T ss_pred EEecceeecCccCCCCEEEEEEEEEEec------ccceEEEEEEEEECCEEEEEEEEEEEEe
Confidence 3344689999999999988877664411 0122222222234799999999887654
No 117
>PLN02322 acyl-CoA thioesterase
Probab=29.39 E-value=3.4e+02 Score=24.34 Aligned_cols=55 Identities=5% Similarity=0.013 Sum_probs=37.2
Q ss_pred ceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEE-EEEcC------CCcEEEEEEEEEEE
Q 016118 317 QLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQH-LLRLE------EGAEVLRARTEWRP 378 (395)
Q Consensus 317 ~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H-~ir~e------dG~ei~rart~W~~ 378 (395)
.-.++.|+|.+-++.|+.|.....+... | ..+.+.+ .+++. +|+.++.++..-..
T Consensus 72 vTiel~infLrpa~~G~~L~Aea~vv~~--G-----r~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~ 133 (154)
T PLN02322 72 AGIQLSINHLKSADLGDLVFAEATPVST--G-----KTIQVWEVKLWKTTDKDKANKILISSSRVTLIC 133 (154)
T ss_pred EEEEEEEEEeccCCCCCEEEEEEEEEec--C-----CCEEEEEEEEEECCCCcccCCeEEEEEEEEEEE
Confidence 3467889999999999988877766542 1 3333333 45552 26889988887743
No 118
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=28.24 E-value=6.2e+02 Score=25.33 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=83.0
Q ss_pred HHHHHHHhhhhhccccCCCCCCCccccccccCccccCCeeEEEEEEeecccCCCCCCcCHHHHHHHHHHHHHHHHHHcCC
Q 016118 99 ITTIFLAAEKQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGL 178 (395)
Q Consensus 99 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~f~~~~~VR~~D~D~~G~v~~~~ll~~~qeAa~~h~~~lGl 178 (395)
+-..+..+|+.|++ |+=-..+||.. +...=.+.+-||...-=++-..-+..++-|+.+--.-...-.
T Consensus 147 ~~~~~~~~~~pie~------R~~~~~~~~~~-----~k~~~~~~vWira~~~~pdd~~~~~~lLay~SD~~ll~tal~-- 213 (289)
T COG1946 147 IVRAKFELERPIEI------RPVNLTNPFSG-----DKSSPQQQVWIRARGELPDDPRLHQALLAYLSDFTLLDTALQ-- 213 (289)
T ss_pred hhhhhhccccceeE------EecccCCcccc-----ccCCcceeEEEEcCCCCCCCHHHHHHHHHHhccchhhhhhhc--
Confidence 33445556776642 22333445555 222234567788876666667777777888877643222211
Q ss_pred CccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCEEEEEEEEEEeC-CcEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 016118 179 LDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASG-KNGMRRDWLIRNAKTGETLTRATSLWVMM 254 (395)
Q Consensus 179 ~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~V~I~Twv~~~~-k~~~~R~f~I~d~~~Gevia~A~S~wV~i 254 (395)
..|.+ +...++.-+=..+.+-|+||.+.+|=+.-.+...... .....| =.+++. +|+++|...-..++-
T Consensus 214 -~Hg~~----~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~-G~lf~r-~G~LiA~~~QEG~~r 283 (289)
T COG1946 214 -PHGLG----FLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVR-GQLFDR-DGQLIASVVQEGLIR 283 (289)
T ss_pred -cCCCc----cccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceee-eEEEcC-CCCEEEEEeeeEEEe
Confidence 01111 1244555666778899999999999888887776653 344444 356674 899999888776654
No 119
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=28.13 E-value=2.5e+02 Score=23.75 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=31.1
Q ss_pred ceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEE
Q 016118 317 QLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRA 372 (395)
Q Consensus 317 ~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~ra 372 (395)
.+..+++.|.+-+..||+|.+..+..+ ..+.+..... ++|..++.+
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~~~---------~~v~~~~~~~-~~g~~v~~g 116 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWKEG---------NRVIFQTKVV-ERDVVVLSN 116 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEEeC---------CEEEEEEEEc-cCCcEEEEC
Confidence 577889999999999999998776422 2344433332 356665554
No 120
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=25.72 E-value=1.9e+02 Score=32.00 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=37.3
Q ss_pred EEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEE
Q 016118 321 VTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTE 375 (395)
Q Consensus 321 i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~ 375 (395)
-++.|++-++.||+|.+...+.+.......+.+.+.+...+++++|+.++.++..
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~G~~Vl~~~~~ 658 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQNGEPVATYDVL 658 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcCCCCEEEEEEEH
Confidence 3889999999999999888775421100011123556667778889998888654
No 121
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=24.93 E-value=4e+02 Score=25.16 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=41.8
Q ss_pred CceEEeEE-eEEEEee-cCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCcEEEEEEEE
Q 016118 193 NLIWVVTR-MQVVVDR-YPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSL 250 (395)
Q Consensus 193 gl~WVV~r-~~Ie~~r-~P~~gD~V~I~Twv~~~~k~~~~R~f~I~d~~~Gevia~A~S~ 250 (395)
+..|+-.. -++.+.+ ++..++.+.+.+.....+...+.-+..++|+ +|+++++....
T Consensus 226 ~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d~-~G~~~~~~~gl 284 (295)
T PF14765_consen 226 GRVFLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFDE-DGRVVAELEGL 284 (295)
T ss_dssp TSEEEEEEEEEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEET-TSBEEEEEEEE
T ss_pred CCEEcccEeCEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEECC-CCCEEEEEccE
Confidence 33444444 4556663 6688999999999977777777889999996 99999888754
No 122
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=24.44 E-value=1.8e+02 Score=32.25 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=38.0
Q ss_pred EEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEE
Q 016118 322 TLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEW 376 (395)
Q Consensus 322 ~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W 376 (395)
++.|++-++.||+|.....+.+.......+.+-+.+.+.+.+++|+.++.++...
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~G~~V~~~~~~~ 671 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQDGELVATYDILT 671 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEECCCCEEEEEEEHH
Confidence 6899999999999998887755311000111235667777788899998887643
No 123
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=23.99 E-value=2.4e+02 Score=24.07 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=27.9
Q ss_pred eEEEEEEeccccCCCC-eEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEE
Q 016118 318 LASVTLEYRRECGRDS-VLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRAR 373 (395)
Q Consensus 318 l~~i~I~Y~kE~~~Gd-~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rar 373 (395)
..--+++|++.+.+|| ++.+...+..... .......+.-.+.. ||+.+|.++
T Consensus 86 ~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~---~~~~~~~~~~~~~v-dg~~v~~~~ 138 (138)
T PF07977_consen 86 AGIRNVKFRGPVYPGDKTLRIEVEIKKIRR---REGGMAIFDGTAYV-DGELVAEAE 138 (138)
T ss_dssp EEEEEEEE-S-B-TTE-EEEEEEEEEEEEE---EETTEEEEEEEEEE-TTEEEEEEE
T ss_pred ccccEEEECccEeCCCcEEEEEEEEEEeec---ccCCEEEEEEEEEE-CCEEEEEEC
Confidence 3455789999999999 8777665543000 01122223323333 688898875
No 124
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=23.87 E-value=2.4e+02 Score=25.44 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=36.5
Q ss_pred ceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEE-EEEc-CCCcEEEEEEEE
Q 016118 317 QLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQH-LLRL-EEGAEVLRARTE 375 (395)
Q Consensus 317 ~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H-~ir~-edG~ei~rart~ 375 (395)
--..+.|.|.+-+..||.|.+...+... | ..+.+.- .++. .+|+.++++|-.
T Consensus 83 vsvdLsvsyL~~AklGe~l~i~a~~vr~--G-----k~la~t~v~l~~K~t~kiia~grht 136 (148)
T KOG3328|consen 83 VSVDLSVSYLSSAKLGEELEIEATVVRV--G-----KTLAFTDVELRRKSTGKIIAKGRHT 136 (148)
T ss_pred eEEEEEhhhccccCCCCeEEEEEEEeec--C-----ceEEEEEEEEEEcCCCeEEEecceE
Confidence 4457788999999999999988777652 2 3444322 3333 579999988754
No 125
>PF11456 DUF3019: Protein of unknown function (DUF3019); InterPro: IPR021559 This is a bacterial family of uncharacterised proteins.
Probab=22.46 E-value=2.3e+02 Score=23.69 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=26.0
Q ss_pred EEEEEEECCCCcEEEEEEEEEEEEEcCCCcccCCC
Q 016118 231 RDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMP 265 (395)
Q Consensus 231 R~f~I~d~~~Gevia~A~S~wV~iD~~tRRpvrIP 265 (395)
-.|.++|.+++..++.+.-....+..++||-.|-|
T Consensus 65 ~~f~L~~~~~~~~la~~~v~V~~~~~k~Rrr~r~p 99 (102)
T PF11456_consen 65 TQFSLRDSDTGQPLAQVKVKVTWVSPKVRRRRRNP 99 (102)
T ss_pred eEEEEEeCCCCcEEEEEEEEEEEeccCcCCccCCC
Confidence 35888888778889988777666667777766654
No 126
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=21.47 E-value=4e+02 Score=23.56 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=40.9
Q ss_pred ceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEEEEEEEcCCCcEEEEEEEEEEE
Q 016118 317 QLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRP 378 (395)
Q Consensus 317 ~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~~H~ir~edG~ei~rart~W~~ 378 (395)
.+-.-++.|.+-+..||+|....++.+...- .+.+-+...+...++.|.+++.+...+--
T Consensus 95 ~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~--~~~G~v~~~~~~~~~~g~~v~~~~~~~~~ 154 (159)
T COG2030 95 NLGGDEVRFVKPVFPGDTLRARVEVLDKRPS--KSRGLVTLRLETVNQEGELVLTLEATVLV 154 (159)
T ss_pred eccccceEecCCCCCCCEEEEEEEEEEeeec--CCceEEEEEEEEEccCCcEEEEEEEeEeE
Confidence 3445678999999999999988887542210 00133455667777788888888777654
No 127
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=21.30 E-value=3.9e+02 Score=20.58 Aligned_cols=53 Identities=13% Similarity=0.010 Sum_probs=37.2
Q ss_pred CceEEEEEEeccccCCCCeEEEEEEeecCccCcccCCCceEE-EEEEEcCCCcEEEEEEEE
Q 016118 316 HQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVEC-QHLLRLEEGAEVLRARTE 375 (395)
Q Consensus 316 ~~l~~i~I~Y~kE~~~Gd~l~s~t~~~~~~~~~~~~~~~~~~-~H~ir~edG~ei~rart~ 375 (395)
....++.|.|.+-...|+.+.........+ ..+.+ .=.+..++|+.++.+.-.
T Consensus 43 ~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~i~~~~G~lva~~~~~ 96 (99)
T cd00556 43 FASLDHHIYFHRPGDADEWLLYEVESLRDG-------RSRALRRGRAYQRDGKLVASATQS 96 (99)
T ss_pred eeeeEEEEEEcCCCCCCccEEEEEEecccC-------CCceEEEEEEECCCCcEEEEEEEe
Confidence 456788999999999988887776664421 22333 335677779999988654
No 128
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=20.07 E-value=6.6e+02 Score=22.79 Aligned_cols=79 Identities=13% Similarity=-0.158 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCCCchHHHhhCCceEEeEEeEEEEeecCCCCCE-EEEEEEEEEeC---CcEEEEEEE
Q 016118 159 ETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDV-VNVETWVSASG---KNGMRRDWL 234 (395)
Q Consensus 159 ~~ll~~~qeAa~~h~~~lGl~~~Gfg~~~~l~~~gl~WVV~r~~Ie~~r~P~~gD~-V~I~Twv~~~~---k~~~~R~f~ 234 (395)
.-.++.|-++...++...+ ..+.+.++.--+++|.++...+|+ ++++..+.+.. +.....+-.
T Consensus 81 ~L~iEamAQ~~~~~~~~~~-------------~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~ 147 (172)
T PRK05174 81 CLGLDAMWQLVGFYLGWLG-------------GPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIADGR 147 (172)
T ss_pred HHHHHHHHHHHHHHHhccc-------------ccCceEEeeccEEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEEEE
Confidence 3456777776665553211 112345556668999999999998 89999888862 333444555
Q ss_pred EEECCCCcEEEEEEEEEE
Q 016118 235 IRNAKTGETLTRATSLWV 252 (395)
Q Consensus 235 I~d~~~Gevia~A~S~wV 252 (395)
++. +|+++++|...-+
T Consensus 148 i~v--~g~~va~a~~~~l 163 (172)
T PRK05174 148 VLV--DGEEIYTAKDLKV 163 (172)
T ss_pred EEE--CCEEEEEEEeeEE
Confidence 554 6999988865544
Done!