Query 016119
Match_columns 395
No_of_seqs 241 out of 1174
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 4E-06 1.4E-10 68.1 9.7 63 137-199 40-103 (110)
2 2i68_A Protein EMRE; transmemb 98.1 2.8E-06 9.7E-11 71.7 6.1 63 137-199 40-103 (137)
3 2i68_A Protein EMRE; transmemb 97.8 2.4E-05 8.3E-10 65.9 5.9 70 296-369 35-105 (137)
4 3b5d_A Multidrug transporter E 97.1 0.0022 7.5E-08 51.7 8.4 41 328-368 64-104 (110)
5 2jp3_A FXYD domain-containing 45.8 16 0.00055 26.0 2.9 38 351-388 22-59 (67)
6 3l1l_A Arginine/agmatine antip 31.4 1.3E+02 0.0044 28.6 8.1 25 351-375 410-434 (445)
7 2jo1_A Phospholemman; FXYD1, N 21.8 93 0.0032 22.3 3.6 20 351-370 21-40 (72)
8 2zxe_G FXYD10, phospholemman-l 19.0 84 0.0029 22.8 2.9 21 351-371 24-44 (74)
9 3rko_J NADH-quinone oxidoreduc 18.6 4.4E+02 0.015 22.4 15.2 24 336-359 127-150 (184)
10 1q90_G Cytochrome B6F complex 14.7 1.4E+02 0.0049 18.5 2.7 26 350-375 8-34 (37)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.28 E-value=4e-06 Score=68.07 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhccccChhHHHHH-HhhhHHHHHHHHHHHccccCChhHHHHHHHHHHHHHhhee
Q 016119 137 TAADCFLYSIGLRYLPVSTYSII-CASQLAFNSFFSFFFNKQTFTPYIINSLVLLTISSALLVF 199 (395)
Q Consensus 137 ~~~~~~l~~~sl~~~s~s~atvl-~~~~pift~l~s~i~~kek~t~~~i~si~l~~~Gv~lv~~ 199 (395)
.+....++..++++.|+|.+..+ ..+.|++++++++++++|++|+.++.|+.+.+.|++++..
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45667888999999999999887 8999999999999999999999999999999999988754
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.14 E-value=2.8e-06 Score=71.66 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhccccChhHHHHH-HhhhHHHHHHHHHHHccccCChhHHHHHHHHHHHHHhhee
Q 016119 137 TAADCFLYSIGLRYLPVSTYSII-CASQLAFNSFFSFFFNKQTFTPYIINSLVLLTISSALLVF 199 (395)
Q Consensus 137 ~~~~~~l~~~sl~~~s~s~atvl-~~~~pift~l~s~i~~kek~t~~~i~si~l~~~Gv~lv~~ 199 (395)
.+...++|+.+++++|++.+..+ .++.|++++++++++++|++++.+++|+++.++|++++..
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45667899999999999988877 8999999999999999999999999999999999998754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.81 E-value=2.4e-05 Score=65.91 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhhhhheeeechhhhhhh-hhhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhhc
Q 016119 296 MNLVWTAICWQIFSIGSVGLISETSSLFSNAI-SVVGLPVVPVLAVVFFRDKMHGLKVIAMVLAIWGFFSFLYQN 369 (395)
Q Consensus 296 ~~l~~~~i~~~~~~~~~~g~~~~~ssl~~sv~-~~~~~pva~i~svi~f~E~lt~~~~iG~~lil~G~~~~~~~~ 369 (395)
+.++.+++.+.++..++.. .....+..+ ..+.++++.++++++|||++++.+++|+++++.|+++.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~----i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAY----IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555555555554422 222223333 567778899999999999999999999999999999988654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.06 E-value=0.0022 Score=51.69 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=36.2
Q ss_pred hhhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhh
Q 016119 328 SVVGLPVVPVLAVVFFRDKMHGLKVIAMVLAIWGFFSFLYQ 368 (395)
Q Consensus 328 ~~~~~pva~i~svi~f~E~lt~~~~iG~~lil~G~~~~~~~ 368 (395)
..+.+..+.++++++|||++++.+++|+.+++.|++..+..
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45667778999999999999999999999999999988643
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=45.82 E-value=16 Score=26.04 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhcccccCCCCCCCcc
Q 016119 351 KVIAMVLAIWGFFSFLYQNYLDDYCKSKSNNGEAKQPL 388 (395)
Q Consensus 351 ~~iG~~lil~G~~~~~~~~~~~~k~~~~~~~~~~~~~~ 388 (395)
-+++.++.+.|+++...+|-+-++.++.++..++++.+
T Consensus 22 LifA~vLfi~GI~iilS~kcrCk~~qk~~~~~~~a~~l 59 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKVTPL 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHTCCTTTSTTTSHHH
T ss_pred hhhHHHHHHHHHHHHHcCcccccCCCCCCCCCccCCce
Confidence 35566777888888776665544444433444555444
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.40 E-value=1.3e+02 Score=28.64 Aligned_cols=25 Identities=4% Similarity=-0.219 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhc
Q 016119 351 KVIAMVLAIWGFFSFLYQNYLDDYC 375 (395)
Q Consensus 351 ~~iG~~lil~G~~~~~~~~~~~~k~ 375 (395)
.+.|.++++.|+.+|.+.+++++|+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccC
Confidence 4568888899999998766554433
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.80 E-value=93 Score=22.32 Aligned_cols=20 Identities=35% Similarity=0.394 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 016119 351 KVIAMVLAIWGFFSFLYQNY 370 (395)
Q Consensus 351 ~~iG~~lil~G~~~~~~~~~ 370 (395)
-+++.++.+.|+++....+-
T Consensus 21 LifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcc
Confidence 34566666777777665553
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=19.02 E-value=84 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 016119 351 KVIAMVLAIWGFFSFLYQNYL 371 (395)
Q Consensus 351 ~~iG~~lil~G~~~~~~~~~~ 371 (395)
-+++.++.+.|+++...+|-+
T Consensus 24 LifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC--
T ss_pred chhHHHHHHHHHHHHHcCccc
Confidence 345667778888877766643
No 9
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=18.64 E-value=4.4e+02 Score=22.43 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHhhccccchhHHHHHHHHHH
Q 016119 336 PVLAVVFFRDKMHGLKVIAMVLAI 359 (395)
Q Consensus 336 ~i~svi~f~E~lt~~~~iG~~lil 359 (395)
--+|..+|+|-+-+.+..+.++..
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999888763
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=14.66 E-value=1.4e+02 Score=18.47 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=15.0
Q ss_pred HHHHHHHHH-HHHHHHHHhhccchhhc
Q 016119 350 LKVIAMVLA-IWGFFSFLYQNYLDDYC 375 (395)
Q Consensus 350 ~~~iG~~li-l~G~~~~~~~~~~~~k~ 375 (395)
.-++|.+-+ +.|.....|..|++.++
T Consensus 8 GIVlGlipvtlaGLfv~Ay~QyrRg~~ 34 (37)
T 1q90_G 8 GIVLGLVPVTIAGLFVTAYLQYLRGDL 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHhhHHHHHHHHHHHHHHHHhhccc
Confidence 344555544 78888888888876544
Done!