Query 016119
Match_columns 395
No_of_seqs 241 out of 1174
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 08:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016119.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016119hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 25.5 30 0.0022 18.1 2.6 17 216-232 2-18 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 19.0 81 0.0059 17.9 4.0 19 44-62 14-32 (37)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 9.9 52 0.0038 22.8 1.5 21 356-376 29-49 (91)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 7.0 1.9E+02 0.014 19.9 3.6 34 340-374 25-58 (100)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 6.4 3.6E+02 0.026 21.6 6.0 27 43-69 32-58 (348)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.8 6.5E+02 0.047 20.2 7.9 33 164-196 35-67 (248)
7 d1iwga8 f.35.1.1 (A:513-566,A: 5.7 4.2E+02 0.031 20.6 5.7 42 323-365 82-126 (222)
8 d1ppjd2 f.23.11.1 (D:196-241) 5.4 2.5E+02 0.018 16.7 2.9 22 349-370 10-31 (46)
9 d2iuba2 f.17.3.1 (A:286-349) M 4.8 2.3E+02 0.017 17.6 2.7 8 360-367 52-59 (64)
10 d1p6ta1 d.58.17.1 (A:1-72) Pot 4.7 1.6E+02 0.012 18.6 1.8 13 1-13 2-14 (72)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.48 E-value=30 Score=18.12 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 016119 216 AIGFICTVGASAGYGFQ 232 (395)
Q Consensus 216 ~~G~ll~L~Aa~~~aly 232 (395)
.+|.+.+-+++++|+.|
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 46888888999999988
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.97 E-value=81 Score=17.85 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=12.4
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 016119 44 RNYWRWIRLGIYALFVICG 62 (395)
Q Consensus 44 ~~~~~~~~~~~~~~~v~~~ 62 (395)
++..+|-++.+..+.++..
T Consensus 14 rtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4566788777766666543
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.91 E-value=52 Score=22.85 Aligned_cols=21 Identities=10% Similarity=-0.115 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhccchhhcc
Q 016119 356 VLAIWGFFSFLYQNYLDDYCK 376 (395)
Q Consensus 356 ~lil~G~~~~~~~~~~~~k~~ 376 (395)
.+++.|...|..-||++++.+
T Consensus 29 ~v~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp TTHHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHHHhhheeeeccCCc
Confidence 345667777777777655443
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.98 E-value=1.9e+02 Score=19.93 Aligned_cols=34 Identities=3% Similarity=0.073 Sum_probs=18.3
Q ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhhccchhh
Q 016119 340 VVFFRDKMHGLKVIAMVLAIWGFFSFLYQNYLDDY 374 (395)
Q Consensus 340 vi~f~E~lt~~~~iG~~lil~G~~~~~~~~~~~~k 374 (395)
+..+++.+-+ -..++.+++.|...|...+++.+|
T Consensus 25 i~~l~~~v~~-i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 25 IHWLDGFILV-IIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhccC
Confidence 3344443322 344555667777777766665443
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.43 E-value=3.6e+02 Score=21.59 Aligned_cols=27 Identities=11% Similarity=0.072 Sum_probs=15.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhHhh
Q 016119 43 SRNYWRWIRLGIYALFVICGQAAATLL 69 (395)
Q Consensus 43 ~~~~~~~~~~~~~~~~v~~~~s~~~ll 69 (395)
..++++-++..++.++.++|..+..++
T Consensus 32 ~~~~~~~~~~~~~~ii~v~gi~gN~lv 58 (348)
T d1u19a_ 32 AEPWQFSMLAAYMFLLIMLGFPINFLT 58 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 344555566666666666665555543
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.82 E-value=6.5e+02 Score=20.16 Aligned_cols=33 Identities=9% Similarity=0.023 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHccccCChhHHHHHHHHHHHHHh
Q 016119 164 LAFNSFFSFFFNKQTFTPYIINSLVLLTISSAL 196 (395)
Q Consensus 164 pift~l~s~i~~kek~t~~~i~si~l~~~Gv~l 196 (395)
.+.++++.++++.+|.-+.|++-=.++++.+..
T Consensus 35 ~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 35 LILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp HHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 456777788888888888887765555554443
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.67 E-value=4.2e+02 Score=20.61 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=24.7
Q ss_pred hhhhhhhhhhhHHHH---HHHhhccccchhHHHHHHHHHHHHHHHH
Q 016119 323 FSNAISVVGLPVVPV---LAVVFFRDKMHGLKVIAMVLAIWGFFSF 365 (395)
Q Consensus 323 ~~sv~~~~~~pva~i---~svi~f~E~lt~~~~iG~~lil~G~~~~ 365 (395)
...++-.+..|++.+ .+..+.+.+++....+|+++. .|+...
T Consensus 82 ~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l-~Gi~v~ 126 (222)
T d1iwga8 82 SIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTT-IGLSAK 126 (222)
T ss_dssp SHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccch-hhhhhh
Confidence 334443344555443 455677888998887776664 444443
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.35 E-value=2.5e+02 Score=16.72 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q 016119 349 GLKVIAMVLAIWGFFSFLYQNY 370 (395)
Q Consensus 349 ~~~~iG~~lil~G~~~~~~~~~ 370 (395)
+.+++.++.++.++..|...+.
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888877765443
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.82 E-value=2.3e+02 Score=17.60 Aligned_cols=8 Identities=13% Similarity=0.339 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 016119 360 WGFFSFLY 367 (395)
Q Consensus 360 ~G~~~~~~ 367 (395)
.++..+.+
T Consensus 52 ~~~~~~~~ 59 (64)
T d2iuba2 52 IAVIMVVY 59 (64)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 33333333
No 10
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=4.71 E-value=1.6e+02 Score=18.65 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=10.7
Q ss_pred CCccceeeEEEec
Q 016119 1 MGEIQEVQLQITA 13 (395)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (395)
|.+.+++.++|.|
T Consensus 2 ~s~~~~~~l~V~G 14 (72)
T d1p6ta1 2 LSEQKEIAMQVSG 14 (72)
T ss_dssp CCCCEEEEEEEES
T ss_pred CCCceEEEEEECC
Confidence 6678888888888
Done!