Query 016120
Match_columns 394
No_of_seqs 260 out of 2372
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-38 4.2E-43 335.1 25.2 308 62-391 22-347 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 7.4E-29 1.6E-33 234.7 14.5 171 191-374 1-173 (287)
3 PLN03210 Resistant to P. syrin 99.9 1.5E-22 3.3E-27 223.8 19.9 166 187-372 185-365 (1153)
4 PF05729 NACHT: NACHT domain 99.2 1.2E-10 2.5E-15 100.4 12.7 146 210-372 1-164 (166)
5 PRK00411 cdc6 cell division co 99.1 1.7E-09 3.7E-14 107.0 16.7 174 187-371 31-220 (394)
6 TIGR02928 orc1/cdc6 family rep 99.0 9.6E-09 2.1E-13 100.6 16.9 174 187-371 16-212 (365)
7 PF01637 Arch_ATPase: Archaeal 98.9 2.9E-09 6.2E-14 96.9 8.8 173 188-373 1-206 (234)
8 TIGR03015 pepcterm_ATPase puta 98.9 1.2E-07 2.6E-12 88.8 19.2 151 208-372 42-206 (269)
9 COG2256 MGS1 ATPase related to 98.9 9.7E-09 2.1E-13 97.9 9.4 144 187-370 25-175 (436)
10 PRK06893 DNA replication initi 98.8 4.1E-08 8.8E-13 89.8 11.2 122 209-371 39-174 (229)
11 PF13173 AAA_14: AAA domain 98.8 2.5E-08 5.4E-13 82.7 8.5 123 209-363 2-127 (128)
12 PF13401 AAA_22: AAA domain; P 98.7 5E-08 1.1E-12 80.8 7.8 114 208-330 3-125 (131)
13 PRK13342 recombination factor 98.7 8.8E-08 1.9E-12 95.4 10.9 144 187-372 13-165 (413)
14 cd01128 rho_factor Transcripti 98.7 6.6E-08 1.4E-12 89.1 7.8 89 210-303 17-114 (249)
15 PRK04841 transcriptional regul 98.6 3.7E-07 8E-12 99.9 14.8 169 187-373 15-201 (903)
16 cd00009 AAA The AAA+ (ATPases 98.6 3.9E-07 8.5E-12 76.0 11.2 124 189-332 1-131 (151)
17 PF13191 AAA_16: AAA ATPase do 98.6 7.1E-08 1.5E-12 84.7 6.8 46 187-232 1-47 (185)
18 KOG2028 ATPase related to the 98.6 3.2E-07 7E-12 86.4 10.0 150 187-370 139-293 (554)
19 PRK05564 DNA polymerase III su 98.6 1.6E-06 3.5E-11 83.1 14.6 154 187-371 5-165 (313)
20 PRK13341 recombination factor 98.5 1E-06 2.2E-11 92.8 12.9 144 187-372 29-182 (725)
21 PRK07003 DNA polymerase III su 98.5 1.4E-06 3.1E-11 90.3 13.5 152 187-373 17-193 (830)
22 PRK12402 replication factor C 98.5 1.5E-06 3.3E-11 84.0 13.1 168 187-371 16-197 (337)
23 TIGR02903 spore_lon_C ATP-depe 98.5 1.1E-06 2.4E-11 91.4 12.6 175 187-372 155-367 (615)
24 PRK09376 rho transcription ter 98.5 2.2E-07 4.8E-12 89.7 6.2 100 197-303 158-267 (416)
25 PRK14961 DNA polymerase III su 98.5 4.3E-06 9.3E-11 81.8 15.3 168 187-371 17-191 (363)
26 TIGR01242 26Sp45 26S proteasom 98.5 1.5E-06 3.3E-11 85.1 12.1 158 187-375 123-310 (364)
27 PRK06645 DNA polymerase III su 98.4 4.1E-06 9E-11 84.8 14.6 172 187-372 22-201 (507)
28 TIGR00635 ruvB Holliday juncti 98.4 9.2E-07 2E-11 84.4 8.8 165 187-372 5-173 (305)
29 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.4E-06 5.1E-11 77.8 11.2 141 187-370 16-171 (226)
30 PRK08727 hypothetical protein; 98.4 4.3E-06 9.4E-11 76.7 12.5 122 209-371 41-175 (233)
31 PRK14957 DNA polymerase III su 98.4 4.4E-06 9.6E-11 85.1 13.3 153 187-371 17-191 (546)
32 PRK12323 DNA polymerase III su 98.4 4.2E-06 9.2E-11 85.8 12.4 171 187-372 17-197 (700)
33 PTZ00202 tuzin; Provisional 98.4 3.8E-05 8.3E-10 75.1 18.2 161 187-370 263-433 (550)
34 PRK14963 DNA polymerase III su 98.4 7E-06 1.5E-10 83.3 13.9 170 187-371 15-188 (504)
35 PRK00080 ruvB Holliday junctio 98.3 2.9E-06 6.4E-11 81.9 10.7 166 187-373 26-195 (328)
36 PRK14949 DNA polymerase III su 98.3 5.9E-06 1.3E-10 87.4 13.6 153 187-371 17-191 (944)
37 COG1474 CDC6 Cdc6-related prot 98.3 6E-06 1.3E-10 80.5 12.5 171 187-371 18-203 (366)
38 PLN03025 replication factor C 98.3 6.5E-06 1.4E-10 79.2 12.1 155 187-372 14-172 (319)
39 PTZ00112 origin recognition co 98.3 1.4E-05 3E-10 83.9 15.0 175 187-372 756-950 (1164)
40 PRK14962 DNA polymerase III su 98.3 1.3E-05 2.8E-10 80.8 14.4 153 187-371 15-189 (472)
41 PRK14960 DNA polymerase III su 98.3 9.7E-06 2.1E-10 83.3 13.4 169 187-372 16-191 (702)
42 PRK00440 rfc replication facto 98.3 1.4E-05 3.1E-10 76.5 13.9 154 187-372 18-175 (319)
43 TIGR00767 rho transcription te 98.3 2.5E-06 5.5E-11 82.8 8.5 93 210-303 169-266 (415)
44 PRK08084 DNA replication initi 98.3 8.5E-06 1.8E-10 74.8 10.9 122 209-371 45-180 (235)
45 PRK07940 DNA polymerase III su 98.2 2E-05 4.3E-10 77.6 13.9 163 187-371 6-189 (394)
46 PRK03992 proteasome-activating 98.2 1.8E-05 3.9E-10 78.2 13.1 158 187-375 132-319 (389)
47 PRK14951 DNA polymerase III su 98.2 2.3E-05 5E-10 81.0 14.1 172 187-372 17-197 (618)
48 PRK04195 replication factor C 98.2 1.8E-05 3.9E-10 80.5 13.2 150 187-371 15-173 (482)
49 PRK09087 hypothetical protein; 98.2 2.7E-05 5.8E-10 71.0 12.6 112 209-372 44-167 (226)
50 TIGR00678 holB DNA polymerase 98.2 6.5E-05 1.4E-09 66.4 14.6 71 291-370 95-167 (188)
51 PHA02544 44 clamp loader, smal 98.2 2.7E-05 5.9E-10 74.7 13.1 145 187-368 22-170 (316)
52 PRK14955 DNA polymerase III su 98.2 1.7E-05 3.8E-10 78.5 11.9 175 187-371 17-199 (397)
53 TIGR02397 dnaX_nterm DNA polym 98.2 5.4E-05 1.2E-09 73.8 15.1 152 187-371 15-189 (355)
54 PRK14964 DNA polymerase III su 98.2 3.2E-05 7E-10 77.8 13.6 154 187-372 14-189 (491)
55 PRK07994 DNA polymerase III su 98.2 2.2E-05 4.7E-10 81.5 12.6 164 187-371 17-191 (647)
56 PRK14958 DNA polymerase III su 98.2 2.7E-05 5.8E-10 79.3 13.1 150 187-371 17-191 (509)
57 TIGR02880 cbbX_cfxQ probable R 98.1 6.7E-05 1.4E-09 70.9 14.3 135 211-372 60-209 (284)
58 PRK11331 5-methylcytosine-spec 98.1 7.8E-06 1.7E-10 80.7 8.1 106 187-303 176-283 (459)
59 PRK08691 DNA polymerase III su 98.1 2.8E-05 6.1E-10 80.6 12.1 151 187-372 17-192 (709)
60 KOG2543 Origin recognition com 98.1 5.7E-05 1.2E-09 72.0 13.1 112 187-303 7-126 (438)
61 PRK05896 DNA polymerase III su 98.1 2.7E-05 5.9E-10 79.7 11.9 168 187-371 17-191 (605)
62 CHL00181 cbbX CbbX; Provisiona 98.1 0.00011 2.4E-09 69.5 15.3 159 187-372 24-210 (287)
63 PRK14969 DNA polymerase III su 98.1 3.2E-05 7E-10 79.2 12.1 150 187-371 17-191 (527)
64 PRK14956 DNA polymerase III su 98.1 3.7E-05 7.9E-10 76.8 12.1 168 187-371 19-193 (484)
65 PRK07764 DNA polymerase III su 98.1 5.3E-05 1.2E-09 81.0 14.0 167 187-371 16-192 (824)
66 PRK14952 DNA polymerase III su 98.1 7.6E-05 1.6E-09 76.9 14.5 168 187-371 14-190 (584)
67 PRK14954 DNA polymerase III su 98.1 7.9E-05 1.7E-09 77.3 14.4 175 187-371 17-199 (620)
68 PRK09111 DNA polymerase III su 98.1 5.9E-05 1.3E-09 78.1 13.4 172 187-372 25-205 (598)
69 PRK08903 DnaA regulatory inact 98.0 7.3E-05 1.6E-09 68.2 12.5 142 187-370 19-169 (227)
70 PRK14970 DNA polymerase III su 98.0 8.5E-05 1.8E-09 72.9 13.7 150 187-371 18-180 (367)
71 PRK07471 DNA polymerase III su 98.0 1.3E-05 2.8E-10 78.2 7.7 169 187-372 20-214 (365)
72 PF00308 Bac_DnaA: Bacterial d 98.0 3.2E-05 7E-10 70.2 9.7 152 189-372 12-180 (219)
73 PRK05642 DNA replication initi 98.0 7.3E-05 1.6E-09 68.6 11.8 122 209-371 45-179 (234)
74 PF00004 AAA: ATPase family as 98.0 2.7E-05 5.8E-10 64.1 7.9 68 212-303 1-69 (132)
75 PRK09112 DNA polymerase III su 98.0 0.00013 2.8E-09 70.9 13.1 170 187-370 24-212 (351)
76 PRK14087 dnaA chromosomal repl 98.0 6.2E-05 1.3E-09 75.6 11.1 134 209-372 141-289 (450)
77 TIGR02881 spore_V_K stage V sp 97.9 0.00015 3.2E-09 67.7 12.6 158 187-372 7-192 (261)
78 PRK14959 DNA polymerase III su 97.9 0.00015 3.3E-09 74.7 13.6 168 187-371 17-191 (624)
79 PRK14953 DNA polymerase III su 97.9 0.00029 6.4E-09 71.4 15.1 153 187-371 17-191 (486)
80 COG2909 MalT ATP-dependent tra 97.9 0.00016 3.4E-09 75.5 13.1 165 196-371 25-207 (894)
81 PRK14971 DNA polymerase III su 97.9 0.0002 4.4E-09 74.5 14.2 149 187-371 18-193 (614)
82 smart00382 AAA ATPases associa 97.9 9.7E-05 2.1E-09 60.7 9.8 86 210-303 3-89 (148)
83 TIGR00362 DnaA chromosomal rep 97.9 0.00015 3.2E-09 72.2 12.6 136 209-373 136-283 (405)
84 COG1373 Predicted ATPase (AAA+ 97.9 0.0003 6.4E-09 69.7 14.4 118 211-365 39-161 (398)
85 PF05496 RuvB_N: Holliday junc 97.9 6.6E-05 1.4E-09 67.3 8.6 145 187-372 25-193 (233)
86 PTZ00454 26S protease regulato 97.9 0.0002 4.4E-09 70.7 12.9 158 187-375 146-333 (398)
87 PRK08116 hypothetical protein; 97.9 0.0001 2.2E-09 69.0 10.1 103 210-331 115-221 (268)
88 PRK08451 DNA polymerase III su 97.8 0.00041 8.9E-09 70.7 14.8 150 187-372 15-190 (535)
89 TIGR03689 pup_AAA proteasome A 97.8 0.00023 4.9E-09 72.1 12.8 163 187-372 183-379 (512)
90 PRK00149 dnaA chromosomal repl 97.8 0.00024 5.3E-09 71.6 13.1 132 209-372 148-294 (450)
91 TIGR02639 ClpA ATP-dependent C 97.8 0.00013 2.9E-09 77.8 11.7 153 187-370 183-357 (731)
92 PRK10787 DNA-binding ATP-depen 97.8 0.001 2.2E-08 71.2 18.2 160 187-371 323-506 (784)
93 PRK14950 DNA polymerase III su 97.8 0.00018 3.9E-09 74.8 12.3 170 187-372 17-193 (585)
94 TIGR02639 ClpA ATP-dependent C 97.8 0.00023 5.1E-09 76.0 13.1 162 187-371 455-662 (731)
95 TIGR00763 lon ATP-dependent pr 97.8 0.0017 3.8E-08 69.8 19.0 45 187-231 321-369 (775)
96 PRK07133 DNA polymerase III su 97.8 0.00045 9.7E-09 72.4 14.0 162 187-370 19-189 (725)
97 PRK08181 transposase; Validate 97.8 7.9E-05 1.7E-09 69.6 7.5 99 210-331 107-209 (269)
98 PF05621 TniB: Bacterial TniB 97.8 0.00019 4.1E-09 67.2 10.0 175 194-379 45-235 (302)
99 CHL00095 clpC Clp protease ATP 97.7 0.00019 4.2E-09 77.6 11.2 155 187-369 180-352 (821)
100 PRK12422 chromosomal replicati 97.7 0.00023 5.1E-09 71.3 11.0 135 209-372 141-285 (445)
101 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00015 3.4E-09 78.2 10.4 43 187-231 188-230 (852)
102 PRK14965 DNA polymerase III su 97.7 0.00046 1E-08 71.6 13.5 168 187-371 17-191 (576)
103 PRK14086 dnaA chromosomal repl 97.7 0.00026 5.7E-09 72.7 11.3 131 210-372 315-460 (617)
104 PRK06620 hypothetical protein; 97.7 0.00018 4E-09 65.0 9.0 109 210-372 45-161 (214)
105 PRK14088 dnaA chromosomal repl 97.7 0.00049 1.1E-08 69.1 12.8 136 209-372 130-277 (440)
106 PRK06305 DNA polymerase III su 97.7 0.00066 1.4E-08 68.3 13.6 152 187-371 18-193 (451)
107 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0011 2.5E-08 71.9 15.6 132 187-330 566-717 (852)
108 PF13177 DNA_pol3_delta2: DNA 97.6 0.00067 1.5E-08 58.5 11.1 135 190-356 1-161 (162)
109 PRK06647 DNA polymerase III su 97.6 0.0015 3.1E-08 67.5 15.4 165 187-371 17-191 (563)
110 PRK10536 hypothetical protein; 97.6 0.0008 1.7E-08 61.9 11.9 53 187-243 56-108 (262)
111 PRK08118 topology modulation p 97.6 2.6E-05 5.6E-10 67.7 2.1 34 211-244 3-37 (167)
112 PRK10865 protein disaggregatio 97.6 0.00094 2E-08 72.4 14.3 132 187-330 569-720 (857)
113 TIGR01241 FtsH_fam ATP-depende 97.6 0.0018 3.9E-08 66.2 15.5 156 187-373 56-240 (495)
114 cd03214 ABC_Iron-Siderophores_ 97.6 0.00051 1.1E-08 60.3 9.9 125 209-337 25-164 (180)
115 PRK05563 DNA polymerase III su 97.6 0.0021 4.5E-08 66.5 15.5 168 187-371 17-191 (559)
116 PRK08058 DNA polymerase III su 97.6 0.0014 3E-08 63.3 13.3 159 187-369 6-180 (329)
117 TIGR01243 CDC48 AAA family ATP 97.6 0.0013 2.9E-08 70.4 14.4 160 187-377 454-641 (733)
118 PTZ00361 26 proteosome regulat 97.5 0.00044 9.6E-09 68.9 9.8 158 187-375 184-371 (438)
119 PRK07952 DNA replication prote 97.5 0.00042 9.2E-09 63.8 8.9 116 195-330 85-204 (244)
120 PRK07399 DNA polymerase III su 97.5 0.0013 2.9E-08 62.9 12.6 170 187-371 5-195 (314)
121 PRK06526 transposase; Provisio 97.5 0.00018 3.9E-09 66.7 6.4 23 209-231 98-120 (254)
122 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0004 8.6E-09 75.1 9.9 132 187-330 567-718 (852)
123 PRK12608 transcription termina 97.5 0.00047 1E-08 66.8 9.2 106 194-302 119-230 (380)
124 PRK12377 putative replication 97.5 0.00042 9E-09 64.0 8.6 101 209-330 101-205 (248)
125 PRK14948 DNA polymerase III su 97.5 0.0024 5.2E-08 66.7 15.1 170 187-371 17-193 (620)
126 PF04665 Pox_A32: Poxvirus A32 97.5 0.00024 5.2E-09 64.9 6.7 37 209-247 13-49 (241)
127 PRK05707 DNA polymerase III su 97.5 0.0021 4.6E-08 61.9 13.5 72 291-371 105-178 (328)
128 PRK10865 protein disaggregatio 97.5 0.0008 1.7E-08 73.0 11.7 43 187-231 179-221 (857)
129 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00065 1.4E-08 73.8 10.9 43 187-231 174-216 (852)
130 CHL00176 ftsH cell division pr 97.5 0.0012 2.6E-08 69.1 12.4 156 187-373 184-368 (638)
131 PRK08939 primosomal protein Dn 97.4 0.00053 1.2E-08 65.4 8.5 119 191-331 136-261 (306)
132 TIGR02640 gas_vesic_GvpN gas v 97.4 0.006 1.3E-07 56.9 15.2 155 194-372 10-199 (262)
133 TIGR00602 rad24 checkpoint pro 97.4 0.0014 3.1E-08 68.2 11.7 45 187-231 85-132 (637)
134 cd03238 ABC_UvrA The excision 97.4 0.0017 3.8E-08 56.7 10.6 117 209-336 21-154 (176)
135 PRK11034 clpA ATP-dependent Cl 97.4 0.0012 2.5E-08 70.4 11.3 157 187-370 187-361 (758)
136 COG0542 clpA ATP-binding subun 97.4 0.00039 8.5E-09 73.0 7.5 120 187-318 492-620 (786)
137 PRK09183 transposase/IS protei 97.4 0.00038 8.2E-09 64.8 6.7 22 210-231 103-124 (259)
138 COG0470 HolB ATPase involved i 97.3 0.0021 4.5E-08 61.6 11.6 138 188-347 3-164 (325)
139 PF02562 PhoH: PhoH-like prote 97.3 0.00032 6.9E-09 62.6 5.4 126 189-329 3-154 (205)
140 CHL00095 clpC Clp protease ATP 97.3 0.0016 3.5E-08 70.5 11.8 131 187-330 510-661 (821)
141 KOG2227 Pre-initiation complex 97.3 0.00096 2.1E-08 65.4 8.9 173 187-372 151-339 (529)
142 PRK06835 DNA replication prote 97.3 0.00085 1.8E-08 64.6 8.5 101 210-330 184-288 (329)
143 COG3899 Predicted ATPase [Gene 97.3 0.0018 3.9E-08 70.1 11.8 45 187-231 1-46 (849)
144 PHA00729 NTP-binding motif con 97.3 0.0022 4.8E-08 58.0 10.4 33 197-231 7-39 (226)
145 PRK09361 radB DNA repair and r 97.3 0.0015 3.2E-08 59.5 8.8 92 207-302 21-117 (225)
146 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0034 7.4E-08 52.9 10.4 106 209-337 26-133 (144)
147 COG0593 DnaA ATPase involved i 97.2 0.0041 9E-08 61.0 12.1 134 208-372 112-258 (408)
148 cd03216 ABC_Carb_Monos_I This 97.2 0.0016 3.5E-08 56.2 8.4 117 210-337 27-148 (163)
149 PRK06921 hypothetical protein; 97.2 0.0013 2.9E-08 61.4 8.4 37 209-247 117-154 (266)
150 cd01120 RecA-like_NTPases RecA 97.2 0.0024 5.2E-08 54.1 9.4 40 211-252 1-40 (165)
151 PF01695 IstB_IS21: IstB-like 97.2 0.00023 4.9E-09 62.4 3.0 73 209-303 47-119 (178)
152 cd03247 ABCC_cytochrome_bd The 97.2 0.0036 7.9E-08 54.7 10.6 113 210-336 29-162 (178)
153 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0017 3.8E-08 59.3 8.9 96 207-303 17-126 (235)
154 PF05673 DUF815: Protein of un 97.2 0.0032 6.9E-08 57.4 10.3 101 187-317 28-133 (249)
155 TIGR02237 recomb_radB DNA repa 97.2 0.0018 3.9E-08 58.1 8.7 93 207-303 10-108 (209)
156 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0061 1.3E-07 52.7 11.6 116 209-335 27-152 (166)
157 cd01131 PilT Pilus retraction 97.2 0.00058 1.3E-08 60.9 5.3 113 210-337 2-115 (198)
158 PF13671 AAA_33: AAA domain; P 97.2 0.00057 1.2E-08 57.2 4.8 21 211-231 1-21 (143)
159 cd03235 ABC_Metallic_Cations A 97.1 0.0046 1E-07 55.6 10.9 53 285-337 143-198 (213)
160 COG3903 Predicted ATPase [Gene 97.1 0.00018 3.9E-09 69.5 1.5 140 208-370 13-154 (414)
161 PRK11034 clpA ATP-dependent Cl 97.1 0.0027 5.9E-08 67.7 10.4 116 187-317 459-583 (758)
162 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0045 9.8E-08 54.2 10.1 104 209-337 25-138 (177)
163 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0022 4.7E-08 64.9 8.7 93 187-303 191-293 (802)
164 PF13207 AAA_17: AAA domain; P 97.1 0.00041 8.9E-09 56.3 2.9 21 211-231 1-21 (121)
165 TIGR01243 CDC48 AAA family ATP 97.1 0.0045 9.7E-08 66.4 11.6 156 187-373 179-361 (733)
166 PRK04296 thymidine kinase; Pro 97.1 0.0014 3E-08 58.2 6.5 111 210-330 3-115 (190)
167 cd01393 recA_like RecA is a b 97.1 0.0055 1.2E-07 55.6 10.6 94 207-303 17-125 (226)
168 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.00098 2.1E-08 60.2 5.4 123 209-337 29-160 (213)
169 cd03263 ABC_subfamily_A The AB 97.0 0.0079 1.7E-07 54.4 11.4 53 285-337 144-198 (220)
170 COG1222 RPT1 ATP-dependent 26S 97.0 0.013 2.9E-07 55.8 13.0 170 187-389 152-353 (406)
171 cd03228 ABCC_MRP_Like The MRP 97.0 0.0043 9.3E-08 53.9 9.2 121 209-337 28-161 (171)
172 KOG0989 Replication factor C, 97.0 0.0024 5.2E-08 59.5 7.7 159 187-371 37-201 (346)
173 cd03237 ABC_RNaseL_inhibitor_d 97.0 0.0068 1.5E-07 56.0 10.9 128 210-337 26-182 (246)
174 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0045 9.8E-08 53.8 9.2 123 209-337 26-161 (173)
175 PF14532 Sigma54_activ_2: Sigm 97.0 0.00075 1.6E-08 56.5 4.1 107 189-331 1-110 (138)
176 KOG0730 AAA+-type ATPase [Post 97.0 0.0081 1.8E-07 61.4 12.0 167 187-385 435-629 (693)
177 cd03269 ABC_putative_ATPase Th 97.0 0.0097 2.1E-07 53.4 11.6 53 285-337 139-194 (210)
178 PRK07261 topology modulation p 97.0 0.0014 3.1E-08 57.0 5.9 22 211-232 2-23 (171)
179 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0026 5.7E-08 59.3 7.7 92 210-303 70-174 (274)
180 PRK13543 cytochrome c biogenes 97.0 0.011 2.5E-07 53.2 11.7 129 209-337 37-203 (214)
181 PRK06696 uridine kinase; Valid 97.0 0.00089 1.9E-08 60.9 4.5 42 190-231 2-44 (223)
182 cd03225 ABC_cobalt_CbiO_domain 97.0 0.0091 2E-07 53.6 11.0 53 285-337 145-200 (211)
183 KOG2228 Origin recognition com 97.0 0.014 3.1E-07 55.2 12.2 171 187-371 25-219 (408)
184 PRK07667 uridine kinase; Provi 97.0 0.0011 2.5E-08 58.8 5.0 37 195-231 3-39 (193)
185 cd03226 ABC_cobalt_CbiO_domain 97.0 0.014 2.9E-07 52.3 12.0 53 285-337 137-192 (205)
186 TIGR00960 3a0501s02 Type II (G 97.0 0.014 2.9E-07 52.7 12.1 54 284-337 148-204 (216)
187 TIGR03740 galliderm_ABC gallid 96.9 0.0086 1.9E-07 54.3 10.7 53 285-337 135-190 (223)
188 cd03229 ABC_Class3 This class 96.9 0.0048 1E-07 54.0 8.7 125 209-337 26-167 (178)
189 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00082 1.8E-08 64.8 4.1 46 187-232 52-101 (361)
190 CHL00195 ycf46 Ycf46; Provisio 96.9 0.008 1.7E-07 60.9 11.4 156 187-373 229-407 (489)
191 cd03217 ABC_FeS_Assembly ABC-t 96.9 0.0058 1.3E-07 54.5 9.4 53 284-336 114-169 (200)
192 KOG2004 Mitochondrial ATP-depe 96.9 0.0057 1.2E-07 63.0 10.1 147 141-303 352-516 (906)
193 TIGR02324 CP_lyasePhnL phospho 96.9 0.015 3.1E-07 52.8 12.1 59 285-347 160-221 (224)
194 PRK05541 adenylylsulfate kinas 96.9 0.0019 4.2E-08 56.3 6.1 36 208-245 6-41 (176)
195 COG1126 GlnQ ABC-type polar am 96.9 0.016 3.5E-07 51.6 11.6 126 209-337 28-202 (240)
196 cd03264 ABC_drug_resistance_li 96.9 0.0027 5.8E-08 57.1 7.1 54 284-337 140-195 (211)
197 COG1875 NYN ribonuclease and A 96.9 0.0055 1.2E-07 58.5 9.2 41 187-229 225-265 (436)
198 cd01394 radB RadB. The archaea 96.9 0.006 1.3E-07 55.1 9.4 93 207-303 17-114 (218)
199 PRK11248 tauB taurine transpor 96.9 0.013 2.7E-07 54.5 11.7 53 285-337 139-195 (255)
200 COG4608 AppF ABC-type oligopep 96.9 0.0061 1.3E-07 56.2 9.3 127 209-338 39-177 (268)
201 PRK11247 ssuB aliphatic sulfon 96.9 0.014 3.1E-07 54.2 12.0 128 209-337 38-200 (257)
202 cd03246 ABCC_Protease_Secretio 96.9 0.0065 1.4E-07 52.8 9.2 122 210-336 29-161 (173)
203 TIGR02858 spore_III_AA stage I 96.9 0.022 4.9E-07 53.2 13.2 132 194-337 97-235 (270)
204 PRK09544 znuC high-affinity zi 96.9 0.0084 1.8E-07 55.6 10.3 129 209-337 30-187 (251)
205 cd03259 ABC_Carb_Solutes_like 96.9 0.01 2.3E-07 53.3 10.7 53 285-337 141-197 (213)
206 PRK11608 pspF phage shock prot 96.9 0.0069 1.5E-07 58.4 10.0 45 187-231 7-51 (326)
207 cd03265 ABC_DrrA DrrA is the A 96.9 0.013 2.9E-07 52.9 11.3 23 209-231 26-48 (220)
208 PRK13538 cytochrome c biogenes 96.8 0.014 3E-07 52.2 11.1 53 285-337 140-195 (204)
209 COG1136 SalX ABC-type antimicr 96.8 0.015 3.3E-07 52.6 11.2 64 279-347 147-214 (226)
210 PF00158 Sigma54_activat: Sigm 96.8 0.0047 1E-07 53.6 7.7 45 188-232 1-45 (168)
211 cd03266 ABC_NatA_sodium_export 96.8 0.012 2.6E-07 53.1 10.8 22 210-231 32-53 (218)
212 KOG0741 AAA+-type ATPase [Post 96.8 0.0072 1.6E-07 60.3 9.8 129 207-370 536-685 (744)
213 PRK06871 DNA polymerase III su 96.8 0.035 7.6E-07 53.3 14.4 154 195-370 11-178 (325)
214 cd03236 ABC_RNaseL_inhibitor_d 96.8 0.013 2.9E-07 54.4 11.2 23 209-231 26-48 (255)
215 cd03293 ABC_NrtD_SsuB_transpor 96.8 0.017 3.6E-07 52.3 11.6 23 210-232 31-53 (220)
216 TIGR02012 tigrfam_recA protein 96.8 0.0029 6.3E-08 60.5 6.8 90 207-303 53-144 (321)
217 cd03298 ABC_ThiQ_thiamine_tran 96.8 0.0042 9.1E-08 55.8 7.6 52 286-337 140-195 (211)
218 cd03215 ABC_Carb_Monos_II This 96.8 0.012 2.6E-07 51.6 10.4 53 285-337 115-170 (182)
219 COG1124 DppF ABC-type dipeptid 96.8 0.011 2.3E-07 53.7 9.9 55 284-338 151-209 (252)
220 TIGR03864 PQQ_ABC_ATP ABC tran 96.8 0.016 3.4E-07 53.1 11.5 54 284-337 142-199 (236)
221 PRK11124 artP arginine transpo 96.8 0.0065 1.4E-07 55.9 8.9 53 285-337 152-207 (242)
222 PF10443 RNA12: RNA12 protein; 96.8 0.011 2.4E-07 58.0 10.8 40 191-232 1-41 (431)
223 PRK13540 cytochrome c biogenes 96.8 0.014 3E-07 52.0 10.7 54 284-337 137-193 (200)
224 TIGR03522 GldA_ABC_ATP gliding 96.8 0.013 2.8E-07 55.8 11.2 53 285-337 144-198 (301)
225 TIGR02974 phageshock_pspF psp 96.8 0.013 2.9E-07 56.5 11.3 45 188-232 1-45 (329)
226 cd03258 ABC_MetN_methionine_tr 96.8 0.01 2.3E-07 54.1 10.2 53 285-337 151-207 (233)
227 cd03268 ABC_BcrA_bacitracin_re 96.8 0.0097 2.1E-07 53.3 9.8 53 285-337 137-192 (208)
228 PRK13647 cbiO cobalt transport 96.8 0.013 2.9E-07 54.9 11.1 54 283-336 147-203 (274)
229 PRK15056 manganese/iron transp 96.8 0.012 2.6E-07 55.2 10.7 53 285-337 153-208 (272)
230 TIGR01817 nifA Nif-specific re 96.8 0.015 3.3E-07 60.0 12.3 46 187-232 197-242 (534)
231 TIGR02902 spore_lonB ATP-depen 96.8 0.0051 1.1E-07 63.3 8.7 43 187-231 66-108 (531)
232 PRK13695 putative NTPase; Prov 96.8 0.0019 4E-08 56.3 4.8 22 211-232 2-23 (174)
233 PRK15429 formate hydrogenlyase 96.8 0.012 2.5E-07 62.7 11.7 133 187-331 377-521 (686)
234 TIGR01277 thiQ thiamine ABC tr 96.8 0.016 3.5E-07 52.1 11.0 52 286-337 140-195 (213)
235 TIGR03771 anch_rpt_ABC anchore 96.8 0.014 3E-07 53.0 10.7 54 284-337 123-179 (223)
236 cd03261 ABC_Org_Solvent_Resist 96.8 0.018 4E-07 52.6 11.6 53 285-337 147-203 (235)
237 cd03297 ABC_ModC_molybdenum_tr 96.8 0.016 3.4E-07 52.2 11.0 23 208-231 23-45 (214)
238 PF07728 AAA_5: AAA domain (dy 96.8 0.0013 2.9E-08 54.8 3.7 87 212-315 2-89 (139)
239 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.017 3.6E-07 53.1 11.0 126 210-337 31-205 (254)
240 PRK09270 nucleoside triphospha 96.8 0.02 4.4E-07 52.2 11.7 25 207-231 31-55 (229)
241 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0066 1.4E-07 51.8 8.0 116 210-337 26-146 (157)
242 cd00983 recA RecA is a bacter 96.8 0.0034 7.4E-08 60.0 6.7 90 207-303 53-144 (325)
243 PRK08769 DNA polymerase III su 96.8 0.036 7.9E-07 53.1 13.7 71 291-370 112-184 (319)
244 COG1484 DnaC DNA replication p 96.7 0.0057 1.2E-07 56.8 8.0 75 208-303 104-178 (254)
245 PLN03187 meiotic recombination 96.7 0.009 2E-07 57.8 9.6 96 207-303 124-232 (344)
246 COG2255 RuvB Holliday junction 96.7 0.0012 2.6E-08 60.9 3.4 50 187-238 27-79 (332)
247 cd03301 ABC_MalK_N The N-termi 96.7 0.015 3.2E-07 52.3 10.6 23 210-232 27-49 (213)
248 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.0024 5.1E-08 57.3 5.3 121 209-337 29-157 (204)
249 PRK10733 hflB ATP-dependent me 96.7 0.014 3E-07 61.5 11.8 158 187-375 153-339 (644)
250 PRK09354 recA recombinase A; P 96.7 0.0066 1.4E-07 58.6 8.5 90 207-303 58-149 (349)
251 PF08423 Rad51: Rad51; InterP 96.7 0.0072 1.6E-07 56.2 8.5 95 208-303 37-144 (256)
252 KOG0733 Nuclear AAA ATPase (VC 96.7 0.044 9.5E-07 55.8 14.3 155 187-372 512-693 (802)
253 TIGR03608 L_ocin_972_ABC putat 96.7 0.019 4.1E-07 51.3 11.0 52 284-335 144-198 (206)
254 cd03292 ABC_FtsE_transporter F 96.7 0.017 3.6E-07 52.0 10.7 53 285-337 147-202 (214)
255 PF13604 AAA_30: AAA domain; P 96.7 0.0026 5.6E-08 56.7 5.2 113 197-327 8-127 (196)
256 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.7 0.027 5.8E-07 51.2 12.0 24 209-232 48-71 (224)
257 cd03267 ABC_NatA_like Similar 96.7 0.022 4.7E-07 52.2 11.4 54 284-337 163-220 (236)
258 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0094 2E-07 51.0 8.3 120 210-331 3-138 (159)
259 TIGR03411 urea_trans_UrtD urea 96.7 0.023 5E-07 52.2 11.6 53 285-337 154-208 (242)
260 PRK10908 cell division protein 96.7 0.026 5.6E-07 51.1 11.7 53 285-337 148-203 (222)
261 TIGR03873 F420-0_ABC_ATP propo 96.7 0.023 5E-07 52.7 11.5 54 284-337 147-203 (256)
262 PRK06762 hypothetical protein; 96.7 0.0076 1.6E-07 51.9 7.7 22 210-231 3-24 (166)
263 PRK14250 phosphate ABC transpo 96.7 0.018 4E-07 52.9 10.7 53 285-337 142-198 (241)
264 PRK10771 thiQ thiamine transpo 96.7 0.0061 1.3E-07 55.7 7.5 53 285-337 140-196 (232)
265 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0086 1.9E-07 52.4 8.2 21 211-231 1-21 (183)
266 COG1120 FepC ABC-type cobalami 96.7 0.013 2.7E-07 54.2 9.4 129 209-337 28-205 (258)
267 PRK06090 DNA polymerase III su 96.6 0.058 1.3E-06 51.7 14.3 154 195-370 12-179 (319)
268 TIGR01184 ntrCD nitrate transp 96.6 0.008 1.7E-07 54.9 8.2 53 285-337 125-181 (230)
269 TIGR02673 FtsE cell division A 96.6 0.022 4.7E-07 51.2 10.9 22 210-231 29-50 (214)
270 cd03213 ABCG_EPDR ABCG transpo 96.6 0.019 4.1E-07 50.9 10.3 117 209-332 35-172 (194)
271 PRK13545 tagH teichoic acids e 96.6 0.023 5.1E-07 57.8 11.9 126 209-337 50-209 (549)
272 COG0468 RecA RecA/RadA recombi 96.6 0.017 3.7E-07 54.0 10.2 93 207-303 58-152 (279)
273 PF14516 AAA_35: AAA-like doma 96.6 0.028 6E-07 54.4 12.0 172 187-370 12-213 (331)
274 PRK06964 DNA polymerase III su 96.6 0.074 1.6E-06 51.5 14.8 71 291-370 131-203 (342)
275 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.016 3.5E-07 52.2 9.8 51 285-335 151-205 (218)
276 cd03294 ABC_Pro_Gly_Bertaine T 96.6 0.022 4.9E-07 53.3 11.1 53 285-337 171-227 (269)
277 KOG1969 DNA replication checkp 96.6 0.019 4.1E-07 59.5 11.0 73 207-303 324-398 (877)
278 cd03256 ABC_PhnC_transporter A 96.6 0.023 5.1E-07 52.0 11.0 53 285-337 155-211 (241)
279 TIGR01188 drrA daunorubicin re 96.6 0.004 8.6E-08 59.4 6.0 54 284-337 134-190 (302)
280 COG2812 DnaX DNA polymerase II 96.6 0.0077 1.7E-07 60.9 8.2 167 187-372 17-192 (515)
281 TIGR02315 ABC_phnC phosphonate 96.6 0.021 4.6E-07 52.4 10.6 22 210-231 29-50 (243)
282 TIGR01166 cbiO cobalt transpor 96.6 0.014 2.9E-07 51.6 8.9 22 210-231 19-40 (190)
283 PLN00020 ribulose bisphosphate 96.6 0.0049 1.1E-07 59.5 6.3 26 207-232 146-171 (413)
284 cd03262 ABC_HisP_GlnQ_permease 96.6 0.02 4.2E-07 51.5 10.1 53 285-337 146-201 (213)
285 PF07693 KAP_NTPase: KAP famil 96.6 0.057 1.2E-06 51.8 13.9 41 192-232 2-43 (325)
286 PRK08699 DNA polymerase III su 96.6 0.027 5.9E-07 54.2 11.5 70 291-369 112-183 (325)
287 COG0396 sufC Cysteine desulfur 96.6 0.022 4.7E-07 51.2 9.9 64 281-347 151-217 (251)
288 cd03218 ABC_YhbG The ABC trans 96.5 0.025 5.5E-07 51.5 10.8 23 209-231 26-48 (232)
289 TIGR00968 3a0106s01 sulfate AB 96.5 0.004 8.8E-08 57.1 5.5 53 285-337 141-197 (237)
290 PRK06067 flagellar accessory p 96.5 0.016 3.5E-07 52.9 9.5 91 207-302 23-130 (234)
291 PRK15455 PrkA family serine pr 96.5 0.0023 5.1E-08 65.0 4.2 45 187-231 77-125 (644)
292 cd03219 ABC_Mj1267_LivG_branch 96.5 0.028 6.1E-07 51.3 11.1 53 285-337 154-209 (236)
293 cd03244 ABCC_MRP_domain2 Domai 96.5 0.016 3.5E-07 52.3 9.4 53 285-337 150-204 (221)
294 PRK13537 nodulation ABC transp 96.5 0.042 9E-07 52.5 12.5 53 285-337 149-204 (306)
295 cd03231 ABC_CcmA_heme_exporter 96.5 0.027 5.8E-07 50.2 10.5 23 209-231 26-48 (201)
296 PRK11264 putative amino-acid A 96.5 0.031 6.8E-07 51.6 11.2 53 285-337 155-210 (250)
297 PRK11889 flhF flagellar biosyn 96.5 0.04 8.7E-07 54.0 12.2 24 208-231 240-263 (436)
298 TIGR01189 ccmA heme ABC export 96.5 0.026 5.6E-07 50.2 10.3 24 209-232 26-49 (198)
299 TIGR02238 recomb_DMC1 meiotic 96.5 0.019 4.1E-07 55.0 9.9 96 207-303 94-202 (313)
300 PRK15064 ABC transporter ATP-b 96.5 0.037 8E-07 57.1 12.8 52 284-337 165-218 (530)
301 COG0572 Udk Uridine kinase [Nu 96.5 0.0076 1.6E-07 54.0 6.6 24 208-231 7-30 (218)
302 PRK15439 autoinducer 2 ABC tra 96.5 0.035 7.6E-07 57.0 12.5 128 210-337 38-206 (510)
303 PRK13634 cbiO cobalt transport 96.5 0.028 6.2E-07 53.2 11.0 55 283-337 154-212 (290)
304 PRK10247 putative ABC transpor 96.5 0.027 5.8E-07 51.2 10.4 53 284-336 147-203 (225)
305 cd03300 ABC_PotA_N PotA is an 96.5 0.033 7.2E-07 50.8 11.1 54 284-337 140-197 (232)
306 PRK04301 radA DNA repair and r 96.5 0.023 5E-07 54.6 10.4 96 207-303 100-209 (317)
307 cd03296 ABC_CysA_sulfate_impor 96.5 0.028 6.1E-07 51.5 10.6 23 209-231 28-50 (239)
308 PF00448 SRP54: SRP54-type pro 96.5 0.0084 1.8E-07 53.4 6.8 56 209-266 1-57 (196)
309 COG2607 Predicted ATPase (AAA+ 96.5 0.099 2.1E-06 47.4 13.4 113 187-330 61-182 (287)
310 PRK13643 cbiO cobalt transport 96.4 0.042 9E-07 52.0 11.9 55 283-337 153-210 (288)
311 PRK13638 cbiO cobalt transport 96.4 0.036 7.7E-07 51.9 11.3 54 284-337 146-202 (271)
312 COG0464 SpoVK ATPases of the A 96.4 0.019 4.2E-07 58.6 10.3 155 187-372 243-424 (494)
313 PRK13652 cbiO cobalt transport 96.4 0.036 7.7E-07 52.2 11.3 53 283-335 146-202 (277)
314 COG0466 Lon ATP-dependent Lon 96.4 0.0029 6.2E-08 65.3 4.1 159 187-370 324-507 (782)
315 PRK11144 modC molybdate transp 96.4 0.036 7.8E-07 54.1 11.6 22 210-231 25-46 (352)
316 PRK13409 putative ATPase RIL; 96.4 0.024 5.2E-07 59.2 11.0 128 209-337 365-520 (590)
317 cd03295 ABC_OpuCA_Osmoprotecti 96.4 0.034 7.4E-07 51.1 11.0 22 210-231 28-49 (242)
318 COG0488 Uup ATPase components 96.4 0.032 6.9E-07 57.1 11.6 64 278-347 157-222 (530)
319 PRK13541 cytochrome c biogenes 96.4 0.032 7E-07 49.4 10.4 23 210-232 27-49 (195)
320 PRK13650 cbiO cobalt transport 96.4 0.029 6.4E-07 52.8 10.7 55 283-337 149-207 (279)
321 cd03224 ABC_TM1139_LivF_branch 96.4 0.024 5.2E-07 51.2 9.8 51 287-337 145-198 (222)
322 PRK11000 maltose/maltodextrin 96.4 0.032 7E-07 54.7 11.3 22 210-231 30-51 (369)
323 TIGR03005 ectoine_ehuA ectoine 96.4 0.027 5.9E-07 52.0 10.3 53 285-337 157-213 (252)
324 KOG1514 Origin recognition com 96.4 0.029 6.4E-07 57.8 11.1 132 187-326 397-544 (767)
325 PRK13548 hmuV hemin importer A 96.4 0.037 8.1E-07 51.4 11.2 47 291-337 157-207 (258)
326 cd03243 ABC_MutS_homologs The 96.4 0.0047 1E-07 55.2 4.9 120 210-337 30-157 (202)
327 PRK11629 lolD lipoprotein tran 96.4 0.044 9.5E-07 50.0 11.4 53 285-337 156-212 (233)
328 KOG0924 mRNA splicing factor A 96.4 0.029 6.3E-07 57.6 10.7 131 195-334 361-513 (1042)
329 PRK10867 signal recognition pa 96.4 0.021 4.6E-07 56.9 9.9 24 208-231 99-122 (433)
330 PRK13648 cbiO cobalt transport 96.4 0.032 6.9E-07 52.2 10.6 23 209-231 35-57 (269)
331 TIGR02314 ABC_MetN D-methionin 96.4 0.041 8.9E-07 53.4 11.6 54 284-337 150-207 (343)
332 PLN03186 DNA repair protein RA 96.4 0.027 5.8E-07 54.5 10.3 103 200-303 114-229 (342)
333 PRK10636 putative ABC transpor 96.4 0.047 1E-06 57.6 13.0 53 283-337 158-212 (638)
334 PRK13639 cbiO cobalt transport 96.4 0.037 8.1E-07 52.0 11.1 53 284-336 147-202 (275)
335 cd03232 ABC_PDR_domain2 The pl 96.4 0.024 5.1E-07 50.2 9.2 23 209-231 33-55 (192)
336 PRK11153 metN DL-methionine tr 96.4 0.032 7E-07 54.2 10.9 53 285-337 151-207 (343)
337 COG4618 ArpD ABC-type protease 96.4 0.035 7.7E-07 55.3 11.0 55 283-337 481-538 (580)
338 TIGR03499 FlhF flagellar biosy 96.4 0.015 3.2E-07 55.0 8.2 24 208-231 193-216 (282)
339 PRK10419 nikE nickel transport 96.4 0.044 9.4E-07 51.3 11.4 54 284-337 161-218 (268)
340 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.4 0.064 1.4E-06 49.0 12.3 53 285-337 150-204 (238)
341 PRK13649 cbiO cobalt transport 96.3 0.038 8.2E-07 52.0 11.0 53 285-337 156-211 (280)
342 KOG0744 AAA+-type ATPase [Post 96.3 0.016 3.4E-07 54.6 8.0 81 209-303 177-261 (423)
343 COG1618 Predicted nucleotide k 96.3 0.0032 7E-08 53.3 3.2 23 209-231 5-27 (179)
344 PTZ00301 uridine kinase; Provi 96.3 0.0043 9.2E-08 55.9 4.2 23 209-231 3-25 (210)
345 PF13238 AAA_18: AAA domain; P 96.3 0.0027 5.8E-08 51.8 2.7 20 212-231 1-20 (129)
346 PRK00771 signal recognition pa 96.3 0.043 9.3E-07 54.9 11.6 24 208-231 94-117 (437)
347 PRK13651 cobalt transporter AT 96.3 0.04 8.8E-07 52.6 11.1 22 210-231 34-55 (305)
348 cd03240 ABC_Rad50 The catalyti 96.3 0.025 5.5E-07 50.6 9.1 59 284-347 131-194 (204)
349 TIGR01288 nodI ATP-binding ABC 96.3 0.056 1.2E-06 51.5 12.1 22 210-231 31-52 (303)
350 PRK10418 nikD nickel transport 96.3 0.054 1.2E-06 50.2 11.6 22 210-231 30-51 (254)
351 TIGR00959 ffh signal recogniti 96.3 0.048 1E-06 54.4 11.9 24 208-231 98-121 (428)
352 PRK13646 cbiO cobalt transport 96.3 0.049 1.1E-06 51.4 11.6 55 283-337 154-212 (286)
353 PRK11701 phnK phosphonate C-P 96.3 0.033 7.1E-07 51.7 10.2 54 284-337 161-218 (258)
354 PRK13546 teichoic acids export 96.3 0.036 7.9E-07 51.7 10.5 24 209-232 50-73 (264)
355 cd03278 ABC_SMC_barmotin Barmo 96.3 0.063 1.4E-06 47.8 11.6 20 211-230 24-43 (197)
356 PF00485 PRK: Phosphoribulokin 96.3 0.0029 6.3E-08 56.2 2.9 21 211-231 1-21 (194)
357 PRK05022 anaerobic nitric oxid 96.3 0.028 6.1E-07 57.7 10.5 46 187-232 188-233 (509)
358 TIGR00972 3a0107s01c2 phosphat 96.3 0.048 1E-06 50.3 11.1 23 209-231 27-49 (247)
359 TIGR02142 modC_ABC molybdenum 96.3 0.046 9.9E-07 53.4 11.5 22 210-231 24-45 (354)
360 PRK10619 histidine/lysine/argi 96.3 0.044 9.5E-07 50.9 10.9 54 284-337 162-218 (257)
361 TIGR02239 recomb_RAD51 DNA rep 96.3 0.028 6.1E-07 53.9 9.8 105 198-303 85-202 (316)
362 PRK10253 iron-enterobactin tra 96.3 0.04 8.8E-07 51.4 10.7 53 285-337 154-210 (265)
363 PRK14247 phosphate ABC transpo 96.3 0.071 1.5E-06 49.2 12.2 53 285-337 157-211 (250)
364 PRK07993 DNA polymerase III su 96.3 0.1 2.2E-06 50.5 13.6 156 194-370 10-179 (334)
365 PRK05480 uridine/cytidine kina 96.3 0.0035 7.7E-08 56.3 3.4 25 208-232 5-29 (209)
366 TIGR00064 ftsY signal recognit 96.3 0.051 1.1E-06 51.0 11.2 24 208-231 71-94 (272)
367 PRK10895 lipopolysaccharide AB 96.3 0.013 2.7E-07 53.9 7.1 23 209-231 29-51 (241)
368 PRK10938 putative molybdenum t 96.3 0.039 8.4E-07 56.3 11.4 23 209-231 29-51 (490)
369 TIGR02236 recomb_radA DNA repa 96.3 0.027 5.8E-07 53.9 9.6 96 207-303 93-203 (310)
370 PRK09493 glnQ glutamine ABC tr 96.3 0.026 5.5E-07 51.8 9.1 23 209-231 27-49 (240)
371 cd03115 SRP The signal recogni 96.3 0.028 6.1E-07 48.7 8.9 21 211-231 2-22 (173)
372 PRK10584 putative ABC transpor 96.3 0.045 9.7E-07 49.7 10.6 53 285-337 157-213 (228)
373 cd03252 ABCC_Hemolysin The ABC 96.2 0.075 1.6E-06 48.6 12.1 53 285-337 149-203 (237)
374 PRK11650 ugpC glycerol-3-phosp 96.2 0.009 1.9E-07 58.3 6.3 22 210-231 31-52 (356)
375 PRK10575 iron-hydroxamate tran 96.2 0.01 2.2E-07 55.4 6.4 54 284-337 157-214 (265)
376 PRK12724 flagellar biosynthesi 96.2 0.034 7.4E-07 54.9 10.2 23 209-231 223-245 (432)
377 PRK11300 livG leucine/isoleuci 96.2 0.036 7.8E-07 51.3 9.9 54 284-337 163-220 (255)
378 PRK08233 hypothetical protein; 96.2 0.0039 8.5E-08 54.3 3.3 24 209-232 3-26 (182)
379 PRK10851 sulfate/thiosulfate t 96.2 0.012 2.7E-07 57.3 7.1 55 283-337 145-203 (353)
380 PRK13539 cytochrome c biogenes 96.2 0.032 6.8E-07 50.0 9.2 49 285-333 138-189 (207)
381 cd03257 ABC_NikE_OppD_transpor 96.2 0.05 1.1E-06 49.4 10.6 53 285-337 156-212 (228)
382 PRK12723 flagellar biosynthesi 96.2 0.064 1.4E-06 52.8 12.0 24 208-231 173-196 (388)
383 cd03283 ABC_MutS-like MutS-lik 96.2 0.031 6.8E-07 49.8 9.0 22 210-231 26-47 (199)
384 PRK14974 cell division protein 96.2 0.048 1E-06 52.7 10.8 24 208-231 139-162 (336)
385 PRK13636 cbiO cobalt transport 96.2 0.052 1.1E-06 51.2 11.0 53 284-336 151-207 (283)
386 cd03253 ABCC_ATM1_transporter 96.2 0.081 1.8E-06 48.3 12.1 54 284-337 147-202 (236)
387 cd03251 ABCC_MsbA MsbA is an e 96.2 0.11 2.3E-06 47.5 12.8 54 284-337 148-203 (234)
388 COG0542 clpA ATP-binding subun 96.2 0.012 2.6E-07 62.1 7.1 156 187-369 171-344 (786)
389 TIGR00235 udk uridine kinase. 96.2 0.0042 9.1E-08 55.7 3.3 24 208-231 5-28 (207)
390 PRK09984 phosphonate/organopho 96.2 0.056 1.2E-06 50.3 11.0 53 285-337 163-219 (262)
391 cd03299 ABC_ModC_like Archeal 96.2 0.057 1.2E-06 49.4 10.8 23 209-231 25-47 (235)
392 PRK14269 phosphate ABC transpo 96.2 0.072 1.6E-06 49.1 11.5 55 283-337 151-207 (246)
393 PRK11432 fbpC ferric transport 96.1 0.0094 2E-07 58.1 5.8 54 284-337 146-203 (351)
394 PRK08533 flagellar accessory p 96.1 0.037 7.9E-07 50.6 9.4 48 209-260 24-71 (230)
395 cd03254 ABCC_Glucan_exporter_l 96.1 0.099 2.1E-06 47.5 12.3 54 284-337 149-204 (229)
396 TIGR02770 nickel_nikD nickel i 96.1 0.063 1.4E-06 48.9 10.9 24 209-232 12-35 (230)
397 COG0563 Adk Adenylate kinase a 96.1 0.013 2.9E-07 51.2 6.1 22 211-232 2-23 (178)
398 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.085 1.8E-06 47.1 11.6 53 285-337 136-190 (207)
399 PRK13531 regulatory ATPase Rav 96.1 0.01 2.2E-07 59.5 6.0 41 187-231 21-61 (498)
400 cd02025 PanK Pantothenate kina 96.1 0.023 5E-07 51.6 7.8 21 211-231 1-21 (220)
401 PRK00279 adk adenylate kinase; 96.1 0.061 1.3E-06 48.5 10.6 21 211-231 2-22 (215)
402 PRK14722 flhF flagellar biosyn 96.1 0.067 1.4E-06 52.3 11.4 23 209-231 137-159 (374)
403 PRK13536 nodulation factor exp 96.1 0.077 1.7E-06 51.5 11.9 54 284-337 182-238 (340)
404 TIGR03258 PhnT 2-aminoethylpho 96.1 0.068 1.5E-06 52.3 11.6 55 283-337 146-205 (362)
405 PRK11831 putative ABC transpor 96.1 0.056 1.2E-06 50.5 10.7 22 210-231 34-55 (269)
406 PF07724 AAA_2: AAA domain (Cd 96.1 0.0062 1.3E-07 53.0 3.8 39 209-249 3-42 (171)
407 PRK14273 phosphate ABC transpo 96.1 0.076 1.6E-06 49.1 11.4 23 209-231 33-55 (254)
408 PTZ00035 Rad51 protein; Provis 96.1 0.056 1.2E-06 52.3 10.8 96 207-303 116-224 (337)
409 TIGR03410 urea_trans_UrtE urea 96.1 0.045 9.7E-07 49.8 9.7 23 209-231 26-48 (230)
410 PRK11147 ABC transporter ATPas 96.1 0.09 1.9E-06 55.5 13.2 53 283-337 165-219 (635)
411 PF00154 RecA: recA bacterial 96.1 0.021 4.4E-07 54.6 7.5 89 208-303 52-142 (322)
412 TIGR03265 PhnT2 putative 2-ami 96.1 0.0097 2.1E-07 58.0 5.4 126 210-337 31-201 (353)
413 PRK09452 potA putrescine/sperm 96.1 0.012 2.7E-07 57.7 6.2 54 284-337 154-211 (375)
414 PF05659 RPW8: Arabidopsis bro 96.0 0.025 5.5E-07 47.7 7.2 107 28-160 7-114 (147)
415 PRK13631 cbiO cobalt transport 96.0 0.074 1.6E-06 51.2 11.4 23 209-231 52-74 (320)
416 PRK10820 DNA-binding transcrip 96.0 0.059 1.3E-06 55.4 11.3 45 187-231 205-249 (520)
417 PRK13641 cbiO cobalt transport 96.0 0.088 1.9E-06 49.8 11.8 54 284-337 155-211 (287)
418 PRK10762 D-ribose transporter 96.0 0.069 1.5E-06 54.7 11.9 23 209-231 30-52 (501)
419 TIGR01420 pilT_fam pilus retra 96.0 0.008 1.7E-07 58.4 4.7 115 209-337 122-236 (343)
420 COG0488 Uup ATPase components 96.0 0.018 4E-07 58.9 7.4 133 209-347 348-508 (530)
421 PRK06547 hypothetical protein; 96.0 0.0095 2.1E-07 51.9 4.7 26 207-232 13-38 (172)
422 cd03280 ABC_MutS2 MutS2 homolo 96.0 0.0042 9.1E-08 55.4 2.5 22 209-230 28-49 (200)
423 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.088 1.9E-06 47.8 11.3 116 208-330 19-165 (229)
424 PRK13637 cbiO cobalt transport 96.0 0.093 2E-06 49.6 11.8 54 283-336 153-210 (287)
425 PRK14275 phosphate ABC transpo 96.0 0.11 2.5E-06 49.0 12.4 22 210-231 66-87 (286)
426 cd03245 ABCC_bacteriocin_expor 96.0 0.061 1.3E-06 48.5 10.2 23 209-231 30-52 (220)
427 PRK13633 cobalt transporter AT 96.0 0.065 1.4E-06 50.4 10.7 54 284-337 154-211 (280)
428 PRK10982 galactose/methyl gala 96.0 0.085 1.8E-06 53.9 12.3 22 210-231 25-46 (491)
429 TIGR02769 nickel_nikE nickel i 96.0 0.068 1.5E-06 49.8 10.7 23 210-232 38-60 (265)
430 PRK14237 phosphate transporter 96.0 0.093 2E-06 49.0 11.6 23 209-231 46-68 (267)
431 PRK10070 glycine betaine trans 96.0 0.1 2.2E-06 51.8 12.2 53 285-337 175-231 (400)
432 PRK14235 phosphate transporter 96.0 0.12 2.6E-06 48.3 12.2 53 285-337 174-228 (267)
433 cd02019 NK Nucleoside/nucleoti 95.9 0.0053 1.2E-07 44.7 2.4 22 211-232 1-22 (69)
434 PRK13640 cbiO cobalt transport 95.9 0.074 1.6E-06 50.1 10.8 54 284-337 153-210 (282)
435 PRK15112 antimicrobial peptide 95.9 0.054 1.2E-06 50.6 9.8 53 285-337 160-216 (267)
436 PHA02244 ATPase-like protein 95.9 0.027 5.9E-07 54.6 7.8 32 196-231 110-141 (383)
437 TIGR02211 LolD_lipo_ex lipopro 95.9 0.086 1.9E-06 47.6 10.8 23 209-231 31-53 (221)
438 PRK11819 putative ABC transpor 95.9 0.12 2.7E-06 53.6 13.2 51 285-337 174-226 (556)
439 cd03248 ABCC_TAP TAP, the Tran 95.9 0.11 2.4E-06 47.0 11.6 23 209-231 40-62 (226)
440 TIGR01069 mutS2 MutS2 family p 95.9 0.0048 1E-07 66.1 2.9 123 208-337 321-451 (771)
441 PRK13409 putative ATPase RIL; 95.9 0.055 1.2E-06 56.5 10.6 23 209-231 99-121 (590)
442 PRK13644 cbiO cobalt transport 95.9 0.091 2E-06 49.3 11.2 54 284-337 146-202 (274)
443 PRK15177 Vi polysaccharide exp 95.9 0.064 1.4E-06 48.3 9.8 23 209-231 13-35 (213)
444 PRK10923 glnG nitrogen regulat 95.9 0.12 2.7E-06 52.3 12.9 46 187-232 139-184 (469)
445 COG1116 TauB ABC-type nitrate/ 95.9 0.065 1.4E-06 48.9 9.6 125 210-337 30-197 (248)
446 PTZ00088 adenylate kinase 1; P 95.9 0.016 3.4E-07 52.9 5.7 21 211-231 8-28 (229)
447 PRK09536 btuD corrinoid ABC tr 95.9 0.1 2.2E-06 51.8 11.8 55 283-337 148-205 (402)
448 COG1223 Predicted ATPase (AAA+ 95.9 0.071 1.5E-06 48.9 9.6 157 187-375 122-301 (368)
449 PRK15064 ABC transporter ATP-b 95.9 0.11 2.3E-06 53.7 12.5 127 209-337 345-501 (530)
450 COG1102 Cmk Cytidylate kinase 95.9 0.0099 2.1E-07 50.4 3.9 44 211-267 2-45 (179)
451 PRK14527 adenylate kinase; Pro 95.9 0.022 4.7E-07 50.4 6.4 23 209-231 6-28 (191)
452 KOG0735 AAA+-type ATPase [Post 95.9 0.022 4.8E-07 58.9 7.0 72 208-303 430-505 (952)
453 PRK13549 xylose transporter AT 95.8 0.093 2E-06 53.8 11.8 23 209-231 31-53 (506)
454 TIGR01186 proV glycine betaine 95.8 0.019 4.1E-07 56.1 6.4 53 285-337 140-196 (363)
455 PRK13632 cbiO cobalt transport 95.8 0.064 1.4E-06 50.2 9.8 23 209-231 35-57 (271)
456 PRK14261 phosphate ABC transpo 95.8 0.094 2E-06 48.5 10.8 23 209-231 32-54 (253)
457 PRK14259 phosphate ABC transpo 95.8 0.093 2E-06 49.1 10.9 23 209-231 39-61 (269)
458 PRK11388 DNA-binding transcrip 95.8 0.047 1E-06 57.7 9.8 46 187-232 326-371 (638)
459 PRK03839 putative kinase; Prov 95.8 0.0063 1.4E-07 53.2 2.8 22 211-232 2-23 (180)
460 PRK14268 phosphate ABC transpo 95.8 0.077 1.7E-06 49.3 10.2 22 210-231 39-60 (258)
461 TIGR03269 met_CoM_red_A2 methy 95.8 0.11 2.4E-06 53.4 12.4 53 285-337 179-235 (520)
462 PRK06002 fliI flagellum-specif 95.8 0.043 9.4E-07 54.7 8.8 91 210-303 166-265 (450)
463 COG2401 ABC-type ATPase fused 95.8 0.012 2.7E-07 57.1 4.8 151 187-337 372-574 (593)
464 smart00534 MUTSac ATPase domai 95.8 0.0042 9E-08 54.8 1.6 120 211-337 1-128 (185)
465 PRK14738 gmk guanylate kinase; 95.8 0.0081 1.8E-07 53.9 3.4 31 201-231 5-35 (206)
466 PRK11231 fecE iron-dicitrate t 95.8 0.092 2E-06 48.6 10.7 53 285-337 149-204 (255)
467 cd01121 Sms Sms (bacterial rad 95.8 0.046 1E-06 53.6 8.9 100 196-303 69-169 (372)
468 TIGR02323 CP_lyasePhnK phospho 95.8 0.1 2.2E-06 48.3 10.8 54 284-337 158-215 (253)
469 PRK14249 phosphate ABC transpo 95.8 0.12 2.5E-06 47.8 11.2 53 285-337 158-212 (251)
470 COG2884 FtsE Predicted ATPase 95.8 0.15 3.2E-06 44.7 10.9 58 280-337 143-203 (223)
471 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0077 1.7E-07 52.8 3.2 24 208-231 2-25 (188)
472 PRK14265 phosphate ABC transpo 95.8 0.09 2E-06 49.3 10.6 60 284-347 171-232 (274)
473 PRK05703 flhF flagellar biosyn 95.8 0.096 2.1E-06 52.4 11.2 23 209-231 221-243 (424)
474 COG1131 CcmA ABC-type multidru 95.8 0.13 2.8E-06 48.9 11.6 128 210-337 32-203 (293)
475 PRK15439 autoinducer 2 ABC tra 95.8 0.11 2.4E-06 53.3 12.0 23 209-231 289-311 (510)
476 KOG0739 AAA+-type ATPase [Post 95.8 0.14 3.1E-06 47.8 11.3 169 187-391 134-330 (439)
477 KOG0927 Predicted transporter 95.8 0.21 4.7E-06 50.3 13.3 220 95-337 316-572 (614)
478 TIGR00708 cobA cob(I)alamin ad 95.8 0.034 7.3E-07 48.2 6.9 122 209-331 5-140 (173)
479 PRK04132 replication factor C 95.8 0.13 2.9E-06 55.3 12.8 126 217-371 574-702 (846)
480 PRK09700 D-allose transporter 95.7 0.11 2.4E-06 53.3 11.9 23 209-231 31-53 (510)
481 PRK11607 potG putrescine trans 95.7 0.024 5.2E-07 55.8 6.7 22 210-231 46-67 (377)
482 KOG0734 AAA+-type ATPase conta 95.7 0.041 8.8E-07 55.2 8.1 46 187-232 305-360 (752)
483 cd02027 APSK Adenosine 5'-phos 95.7 0.11 2.4E-06 43.9 10.0 21 211-231 1-21 (149)
484 COG3267 ExeA Type II secretory 95.7 0.52 1.1E-05 43.2 14.6 149 208-372 50-214 (269)
485 cd03227 ABC_Class2 ABC-type Cl 95.7 0.044 9.6E-07 47.1 7.6 51 292-347 99-152 (162)
486 PRK11308 dppF dipeptide transp 95.7 0.1 2.2E-06 50.4 10.8 54 284-337 164-221 (327)
487 COG1122 CbiO ABC-type cobalt t 95.7 0.092 2E-06 48.1 9.9 23 209-231 30-52 (235)
488 PRK13635 cbiO cobalt transport 95.7 0.14 3E-06 48.2 11.5 54 284-337 150-207 (279)
489 cd01129 PulE-GspE PulE/GspE Th 95.7 0.023 4.9E-07 53.1 6.1 128 189-337 62-190 (264)
490 COG1419 FlhF Flagellar GTP-bin 95.7 0.18 4E-06 49.3 12.3 24 208-231 202-226 (407)
491 cd02023 UMPK Uridine monophosp 95.7 0.0067 1.5E-07 53.9 2.4 21 211-231 1-21 (198)
492 TIGR03375 type_I_sec_LssB type 95.7 0.13 2.9E-06 54.8 12.6 23 209-231 491-513 (694)
493 cd01125 repA Hexameric Replica 95.7 0.11 2.4E-06 47.6 10.5 21 211-231 3-23 (239)
494 PRK14236 phosphate transporter 95.7 0.17 3.7E-06 47.4 11.9 53 285-337 179-233 (272)
495 TIGR02982 heterocyst_DevA ABC 95.7 0.085 1.8E-06 47.7 9.6 22 210-231 32-53 (220)
496 PRK05439 pantothenate kinase; 95.6 0.071 1.5E-06 50.8 9.3 25 207-231 84-108 (311)
497 PRK11288 araG L-arabinose tran 95.6 0.12 2.6E-06 53.0 11.7 132 211-354 32-214 (501)
498 cd01122 GP4d_helicase GP4d_hel 95.6 0.16 3.4E-06 47.4 11.6 51 209-262 30-80 (271)
499 TIGR01818 ntrC nitrogen regula 95.6 0.16 3.4E-06 51.4 12.5 133 187-331 135-279 (463)
500 COG2842 Uncharacterized ATPase 95.6 0.075 1.6E-06 49.6 9.1 116 187-315 73-189 (297)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-38 Score=335.13 Aligned_cols=308 Identities=20% Similarity=0.270 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccccccccChHHHHHHHHHHHHhhhhHhHhhhhHHhhhhcC--C----------c
Q 016120 62 LFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQQQ--N----------S 129 (394)
Q Consensus 62 l~~~~~~~l~~L~~~L~~i~~~~l~~ae~~~~~~~~~~~Wl~~l~~~a~d~eD~lD~~~~~~~~~~--~----------~ 129 (394)
.+.+.++.+..|+++|..++.+ +++++.++........|.+.+++++|++||.++.|..+....+ . .
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~-l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSA-LEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHH-HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 5678888999999999999999 9999999999999999999999999999999999988776643 1 1
Q ss_pred ce-eccccchhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCccccccCCCCCCCc---ccceecccHHHHHHHHhcC
Q 016120 130 EN-ESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRL---DINEFERGREELFDLLIEG 205 (394)
Q Consensus 130 ~~-~~~~~~~~~~r~~i~~~i~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Gr~~~~~~i~~~L~~~ 205 (394)
++ ...+..+....+.+.+++-++...++.+..+.. +... .....+...++..+.. + ||.+..++++.+.|.++
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~-~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d 177 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVV-GESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED 177 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-eecc-cccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC
Confidence 11 112223333445555566665555555542221 1100 1101122233333333 4 99999999999999988
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHhcCcc-cccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHH
Q 016120 206 PSGLAVVAILDSSGFDKTVFTADTYNNDH-VKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKS 283 (394)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~ 283 (394)
+. .+++|+||||+||||||+.++|+.. ++++|+.++||+||++++...++.+|+..++.... .... +.++++.
T Consensus 178 ~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~---~~~~~~~~~~~~ 252 (889)
T KOG4658|consen 178 DV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE---EWEDKEEDELAS 252 (889)
T ss_pred CC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc---ccchhhHHHHHH
Confidence 64 8999999999999999999999987 99999999999999999999999999999988554 2233 5578999
Q ss_pred HHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHH
Q 016120 284 ILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEA 363 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~ 363 (394)
.+.+.|++|||||||||||+ ..+|+.+..++|...+||||++|||++.||..+ .+....++ ++.| +.+||
T Consensus 253 ~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~--m~~~~~~~-----v~~L--~~~ea 322 (889)
T KOG4658|consen 253 KLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRA--MGVDYPIE-----VECL--TPEEA 322 (889)
T ss_pred HHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhcc--ccCCcccc-----cccc--Ccccc
Confidence 99999999999999999999 999999999999999999999999999999993 26688999 9999 99999
Q ss_pred HHHHHHHhCCCCCCCCcCCCchhhhhhc
Q 016120 364 WQFFILHYGSMPLENYLQGEAIPTVGDN 391 (394)
Q Consensus 364 ~~Lf~~~~~~~~~~~~~~~~~~~~vg~~ 391 (394)
|.||++.+|......++. ++++||.
T Consensus 323 W~LF~~~v~~~~~~~~~~---i~~lak~ 347 (889)
T KOG4658|consen 323 WDLFQKKVGPNTLGSHPD---IEELAKE 347 (889)
T ss_pred HHHHHHhhcccccccccc---HHHHHHH
Confidence 999999988766566555 6666653
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=7.4e-29 Score=234.65 Aligned_cols=171 Identities=30% Similarity=0.475 Sum_probs=140.8
Q ss_pred ecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 016120 191 FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV 270 (394)
Q Consensus 191 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 270 (394)
||.++++|.++|...+++.++|+|+||||+||||||+.++++..++.+|+.++|+++++..+...++..|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~- 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS- 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc-
Confidence 7889999999999866789999999999999999999999976699999999999999999999999999999998854
Q ss_pred cccc-Cc-CHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceeeC
Q 016120 271 SVII-GE-DYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRD 348 (394)
Q Consensus 271 ~~~~-~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~ 348 (394)
+. .. +.......+.+.|+++++||||||||+ ...|+.+...++....||+||||||+..++..+ ......++
T Consensus 80 --~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~--~~~~~~~~- 153 (287)
T PF00931_consen 80 --SISDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSL--GGTDKVIE- 153 (287)
T ss_dssp --TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTH--HSCEEEEE-
T ss_pred --ccccccccccccccchhhhccccceeeeeeecc-ccccccccccccccccccccccccccccccccc--cccccccc-
Confidence 12 23 788899999999999999999999999 889999988888888899999999999998877 23377899
Q ss_pred CccCCCCCCCChHHHHHHHHHHhCCC
Q 016120 349 SVLFGGPLIRLKHEAWQFFILHYGSM 374 (394)
Q Consensus 349 ~~~~l~~L~~~~~~~~~Lf~~~~~~~ 374 (394)
|++| +.++|++||++.++..
T Consensus 154 ----l~~L--~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 154 ----LEPL--SEEEALELFKKRAGRK 173 (287)
T ss_dssp ----CSS----HHHHHHHHHHHHTSH
T ss_pred ----cccc--cccccccccccccccc
Confidence 9999 9999999999996643
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.5e-22 Score=223.81 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=131.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe---CCC-----------CC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV---SIA-----------YD 252 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~ 252 (394)
+++|++..++++..+|..+....++++||||||+||||||+.+|+ ++..+|+..+|+.. +.. ++
T Consensus 185 ~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~ 262 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYN 262 (1153)
T ss_pred cccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccc
Confidence 799999999999999876666799999999999999999999999 78889998888742 111 11
Q ss_pred -HHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120 253 -FGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 253 -~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 331 (394)
...++.+++..+..... .... . ...+++.+++||+||||||||+ ...|+.+.......++||+||||||++
T Consensus 263 ~~~~l~~~~l~~il~~~~----~~~~--~-~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 263 MKLHLQRAFLSEILDKKD----IKIY--H-LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred hhHHHHHHHHHHHhCCCC----cccC--C-HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 22345555555543321 1110 1 2456778899999999999999 999999987766667899999999999
Q ss_pred HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 332 DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 332 ~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.++..+ +..++|+ ++.| +.++||+||+++++
T Consensus 335 ~vl~~~---~~~~~~~-----v~~l--~~~ea~~LF~~~Af 365 (1153)
T PLN03210 335 HFLRAH---GIDHIYE-----VCLP--SNELALEMFCRSAF 365 (1153)
T ss_pred HHHHhc---CCCeEEE-----ecCC--CHHHHHHHHHHHhc
Confidence 999877 5678999 9999 99999999999954
No 4
>PF05729 NACHT: NACHT domain
Probab=99.24 E-value=1.2e-10 Score=100.42 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=90.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHH---HHHHHHHHHhCCCCCCccccCcCHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFG---KMLDDIIKSVMPPSRVSVIIGEDYQLKK 282 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~~~~ 282 (394)
+++.|+|.+|+||||+++.++.+...... +...+|++........ .+...+......... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence 47889999999999999999875322222 4566777666544322 333344333332211 1111
Q ss_pred HHHHHHc-cCCeEEEEEeCCCC-C--ch-----hHHHHH-hhCCC-CCCCcEEEEecCChHHHhhchhcCCCceeeCCcc
Q 016120 283 SILRDYL-TNKKYFIVLDDVFD-N--SE-----IWSDLE-ELLPD-DENGSRVLITVTDPDLLASLEMENGEKIRRDSVL 351 (394)
Q Consensus 283 ~~l~~~l-~~kr~LlVlDdv~~-~--~~-----~~~~l~-~~l~~-~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~ 351 (394)
.+...+ +.++++||||++++ . .. .+..+. ..++. ..++++++||+|................+.
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~---- 146 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILE---- 146 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEE----
Confidence 222233 56899999999987 1 11 133332 33333 356899999999876633221113445778
Q ss_pred CCCCCCCChHHHHHHHHHHhC
Q 016120 352 FGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 352 ~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
+++| ++++..+++.+.|.
T Consensus 147 -l~~~--~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 147 -LEPF--SEEDIKQYLRKYFS 164 (166)
T ss_pred -ECCC--CHHHHHHHHHHHhh
Confidence 9999 99999999988864
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.13 E-value=1.7e-09 Score=107.04 Aligned_cols=174 Identities=16% Similarity=0.118 Sum_probs=115.2
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
.++||++++++|...|... +.....+.|+|++|+|||++++.++++.......-..++++.....+...++..++.++
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 110 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL 110 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence 7999999999999998442 23445678999999999999999998432222123456777777777889999999998
Q ss_pred CCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-C----chhHHHHHhhCCCCCCCcE--EEEecCChHHH
Q 016120 265 MPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-N----SEIWSDLEELLPDDENGSR--VLITVTDPDLL 334 (394)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~----~~~~~~l~~~l~~~~~gs~--IivTTR~~~v~ 334 (394)
..... .... +...+...+.+.+. +++.+||||+++. . .+.+..+...+.. ..+++ +|.++...++.
T Consensus 111 ~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 111 FGHPP---PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFL 186 (394)
T ss_pred cCCCC---CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchh
Confidence 76321 0122 56677777777774 4678999999987 1 2233344333222 22333 56666655443
Q ss_pred hhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 335 ASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 335 ~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
..... .-....+. ++|+ +.++...++..++
T Consensus 187 ~~l~~~~~s~~~~~~i~-----f~py--~~~e~~~il~~r~ 220 (394)
T PRK00411 187 YILDPRVKSVFRPEEIY-----FPPY--TADEIFDILKDRV 220 (394)
T ss_pred hhcCHHHHhcCCcceee-----cCCC--CHHHHHHHHHHHH
Confidence 33210 00124567 9999 9999999998875
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.03 E-value=9.6e-09 Score=100.61 Aligned_cols=174 Identities=17% Similarity=0.029 Sum_probs=109.7
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccc-ccc---CeeEEEEeCCCCCHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVK-FYF---DCLAWVRVSIAYDFGKMLDDI 260 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~i~~~i 260 (394)
.++||+.++++|...|... +.....+.|+|++|+|||++++.+++..... ... -..+|++.....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 7999999999999998642 2345578899999999999999999742110 111 135678877777788899999
Q ss_pred HHHhC---CCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-C---chhHHHHHhhC-CCCC--CCcEEEEe
Q 016120 261 IKSVM---PPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-N---SEIWSDLEELL-PDDE--NGSRVLIT 327 (394)
Q Consensus 261 ~~~l~---~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~---~~~~~~l~~~l-~~~~--~gs~IivT 327 (394)
+.++. ...+ ... +..+....+.+.+. +++++||||+++. . .+.+..+.... .... ....+|.+
T Consensus 96 ~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 96 ANQLRGSGEEVP----TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHhhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 99984 2211 112 44555566666663 5689999999988 1 11122332221 1111 22234555
Q ss_pred cCChHHHhhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 328 VTDPDLLASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 328 TR~~~v~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
|...+....+.. .-....+. ++|. +.++..+++..++
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~-----f~p~--~~~e~~~il~~r~ 212 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEII-----FPPY--DAEELRDILENRA 212 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceee-----eCCC--CHHHHHHHHHHHH
Confidence 544433222200 00124567 9999 9999999998875
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.94 E-value=2.9e-09 Score=96.93 Aligned_cols=173 Identities=21% Similarity=0.167 Sum_probs=85.8
Q ss_pred cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH--------
Q 016120 188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD-------- 259 (394)
Q Consensus 188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~-------- 259 (394)
|+||+.++++|.+++..+ ....+.|+|+.|+|||+|++.+.+ ..++.-...+|+........ .....
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhh-hHHHHHHHHHHHH
Confidence 789999999999998764 356788999999999999999998 34322123445544343322 11222
Q ss_pred ------HHHHhCCCCCCc--cccCcCHHHHHHHHHHHc--cCCeEEEEEeCCCC-C------chhHHHHH---hhCCCCC
Q 016120 260 ------IIKSVMPPSRVS--VIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-N------SEIWSDLE---ELLPDDE 319 (394)
Q Consensus 260 ------i~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~-~------~~~~~~l~---~~l~~~~ 319 (394)
+...+....... .............+.+.+ .+++++||+||+.. . ......+. ..+....
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 222221111000 000112222333333333 23569999999987 2 11122233 3333344
Q ss_pred CCcEEEEecCChHHHhh-ch----hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 320 NGSRVLITVTDPDLLAS-LE----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~-~~----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
+.+ ++++..+..+... .. ..+....+. |+|| +.+++++++...+..
T Consensus 156 ~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~-----l~~l--~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 156 NVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIE-----LKPL--SKEEAREFLKELFKE 206 (234)
T ss_dssp TEE-EEEEESSHHHHHHTT-TTSTTTT---EEE-----E------HHHHHHHHHHHHHC
T ss_pred Cce-EEEECCchHHHHHhhcccCccccccceEE-----EeeC--CHHHHHHHHHHHHHH
Confidence 444 4455555544443 10 012334477 9999 999999999997643
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.92 E-value=1.2e-07 Score=88.78 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=90.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc--CHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE--DYQLKKSIL 285 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~--~~~~~~~~l 285 (394)
+.+.+.|+|++|+|||||++.+++.... ..+ ...|+ +....+..+++..++..++.+.. ..+. ....+...+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHH
Confidence 3568899999999999999999984321 111 22343 33455778899999988876532 1111 122333333
Q ss_pred HHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCC---CCCCcEEEEecCChHHHhhchh-------cCCCceeeCCccCC
Q 016120 286 RDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPD---DENGSRVLITVTDPDLLASLEM-------ENGEKIRRDSVLFG 353 (394)
Q Consensus 286 ~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~---~~~gs~IivTTR~~~v~~~~~~-------~~~~~~~~~~~~~l 353 (394)
.... .+++.+||+||++. +...++.+...... ......|++|... .....+.. ......++ +
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~-----l 189 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCH-----L 189 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeee-----C
Confidence 3333 67889999999998 45566666533221 1222244555543 33222200 01134567 9
Q ss_pred CCCCCChHHHHHHHHHHhC
Q 016120 354 GPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 354 ~~L~~~~~~~~~Lf~~~~~ 372 (394)
++| +.+|...++...+.
T Consensus 190 ~~l--~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 190 GPL--DREETREYIEHRLE 206 (269)
T ss_pred CCC--CHHHHHHHHHHHHH
Confidence 999 99999999987753
No 9
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=9.7e-09 Score=97.88 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=92.3
Q ss_pred ccceecccH---HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGR---EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~---~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|.+..+ .-|-.++.. .++....+||++|+||||||+.+.. ....+|.. +|-..+-.+
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-----~sAv~~gvk-------- 87 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-----LSAVTSGVK-------- 87 (436)
T ss_pred HhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHH--hhCCceEE-----eccccccHH--------
Confidence 666655433 222233333 3577778999999999999999998 55555532 222221111
Q ss_pred hCCCCCCccccCcCHHHHHHHHHH-HccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChHHHhhchh
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRD-YLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI--TVTDPDLLASLEM 339 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~~~~~~ 339 (394)
+.....+.-++ ...|++.+|.+|.|.. |..+-+- .||.-.+|.-|+| ||-|+...-.-..
T Consensus 88 -------------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 88 -------------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred -------------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 23333333322 2358999999999998 6644444 4566688887777 8888843222111
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
.+...++. ++|| +.++-.+++.+.
T Consensus 152 lSR~~vf~-----lk~L--~~~di~~~l~ra 175 (436)
T COG2256 152 LSRARVFE-----LKPL--SSEDIKKLLKRA 175 (436)
T ss_pred hhhhheee-----eecC--CHHHHHHHHHHH
Confidence 35678999 9999 999999999884
No 10
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=4.1e-08 Score=89.84 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
.+.+.++|++|+|||+|++.+++ +.......+.|+++.... . ... .+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~---~---------------------~~~----~~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQ---Y---------------------FSP----AVLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhh---h---------------------hhH----HHHhh
Confidence 45788999999999999999998 443333445676653110 0 000 11111
Q ss_pred ccCCeEEEEEeCCCC--CchhHHH-HHhhCCCC-CCCcEEEE-ecCC---------hHHHhhchhcCCCceeeCCccCCC
Q 016120 289 LTNKKYFIVLDDVFD--NSEIWSD-LEELLPDD-ENGSRVLI-TVTD---------PDLLASLEMENGEKIRRDSVLFGG 354 (394)
Q Consensus 289 l~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~~-~~gs~Iiv-TTR~---------~~v~~~~~~~~~~~~~~~~~~~l~ 354 (394)
+. +.-+|||||+|. ....|+. +...+... ..|+.+|+ |+.. +++...+ ....+++ ++
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl---~~g~~~~-----l~ 159 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL---TWGEIYQ-----LN 159 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH---hcCCeee-----CC
Confidence 21 234899999997 2345653 33333222 34555654 5544 3555555 4567889 99
Q ss_pred CCCCChHHHHHHHHHHh
Q 016120 355 PLIRLKHEAWQFFILHY 371 (394)
Q Consensus 355 ~L~~~~~~~~~Lf~~~~ 371 (394)
++ +.++.++++++.+
T Consensus 160 ~p--d~e~~~~iL~~~a 174 (229)
T PRK06893 160 DL--TDEQKIIVLQRNA 174 (229)
T ss_pred CC--CHHHHHHHHHHHH
Confidence 99 9999999999885
No 11
>PF13173 AAA_14: AAA domain
Probab=98.79 E-value=2.5e-08 Score=82.66 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
.+++.|.|+.|+|||||++.++.+.. .-...++++.......... ..+ ..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence 36889999999999999999987422 2344566654332211000 000 23333343
Q ss_pred ccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc-h--hcCCCceeeCCccCCCCCCCChHHH
Q 016120 289 LTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL-E--MENGEKIRRDSVLFGGPLIRLKHEA 363 (394)
Q Consensus 289 l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~-~--~~~~~~~~~~~~~~l~~L~~~~~~~ 363 (394)
...++.+++||++.. ...|......+.+..+..+|++|+.+......- . ..+....++ |.|| +-.|.
T Consensus 58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~-----l~Pl--sf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIE-----LYPL--SFREF 127 (128)
T ss_pred hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEE-----ECCC--CHHHh
Confidence 444778899999999 777877777776666678999999987555321 0 023345567 9999 87663
No 12
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.70 E-value=5e-08 Score=80.78 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccc-----cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFY-----FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLK 281 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~ 281 (394)
+.+.+.|+|.+|+|||++++.+... .... -...+|++++...+...+...|+..++.... .. +...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l 75 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-----SRQTSDEL 75 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-----STS-HHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-----ccCCHHHH
Confidence 3568899999999999999999873 2221 2345699988888999999999999998765 22 67777
Q ss_pred HHHHHHHccC-CeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCC
Q 016120 282 KSILRDYLTN-KKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTD 330 (394)
Q Consensus 282 ~~~l~~~l~~-kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~ 330 (394)
...+.+.+.. +..+||+|++.. +...++.+..... ..+.+||+..+.
T Consensus 76 ~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7888888864 456999999977 1234455544433 556677776554
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.70 E-value=8.8e-08 Score=95.37 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=89.3
Q ss_pred ccceecccHHH---HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREE---LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~---i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|.+..+.. +..++... ....+.++|++|+||||||+.+++ .....| +.++.......
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~--~~~~~~-----~~l~a~~~~~~-------- 75 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAG--ATDAPF-----EALSAVTSGVK-------- 75 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHH--HhCCCE-----EEEecccccHH--------
Confidence 78998877655 66666544 355778899999999999999988 333332 32222111111
Q ss_pred hCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChH--HHhhc
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI--TVTDPD--LLASL 337 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--v~~~~ 337 (394)
+...+.+..... ..+++.+|++|+++. +....+.+...+. .|+.+++ ||.++. +...+
T Consensus 76 -------------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 76 -------------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred -------------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 111222222222 245788999999998 5556666666553 3455554 455543 22222
Q ss_pred hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.+...+++ +.++ +.++.+.++.+.+.
T Consensus 140 --~SR~~~~~-----~~~l--s~e~i~~lL~~~l~ 165 (413)
T PRK13342 140 --LSRAQVFE-----LKPL--SEEDIEQLLKRALE 165 (413)
T ss_pred --hccceeeE-----eCCC--CHHHHHHHHHHHHH
Confidence 23456788 9999 99999999988743
No 14
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.65 E-value=6.6e-08 Score=89.13 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=62.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCCccccCc-CHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA--YDFGKMLDDI-----IKSVMPPSRVSVIIGE-DYQLK 281 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i-----~~~l~~~~~~~~~~~~-~~~~~ 281 (394)
..++|+|++|+|||||++.+|++.... +|+.++|++++.+ +++.+++..+ +...+.+.. ... -....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~----~~~~~~~~~ 91 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE----RHVQVAEMV 91 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH----HHHHHHHHH
Confidence 467899999999999999999965444 8999999998877 7899999998 443333211 000 11222
Q ss_pred HHHHHHH-ccCCeEEEEEeCCCC
Q 016120 282 KSILRDY-LTNKKYFIVLDDVFD 303 (394)
Q Consensus 282 ~~~l~~~-l~~kr~LlVlDdv~~ 303 (394)
......+ -.|++.++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 3333332 257999999999874
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=3.7e-07 Score=99.87 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=101.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-CCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~ 265 (394)
.++-|+. |.+.|.. ....+++.|+|++|.||||++...... ++.++|+++.. .-++......++..+.
T Consensus 15 ~~~~R~r----l~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 15 NTVVRER----LLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccCcchH----HHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 5555654 4444443 235789999999999999999988752 23688999964 4466677777777774
Q ss_pred CCCCCc--------cccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-Cchh-HHHHHhhCCCCCCCcEEEEecCChH
Q 016120 266 PPSRVS--------VIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-NSEI-WSDLEELLPDDENGSRVLITVTDPD 332 (394)
Q Consensus 266 ~~~~~~--------~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~~~~-~~~l~~~l~~~~~gs~IivTTR~~~ 332 (394)
...+.. ...+. +...+...+...+. +.+++|||||+.. +... .+.+...++....+.++|||||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 222110 00111 23333433433332 6789999999987 3223 3344444444456678989999842
Q ss_pred HHhhchhcCCCceeeCCccCCC----CCCCChHHHHHHHHHHhCC
Q 016120 333 LLASLEMENGEKIRRDSVLFGG----PLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 333 v~~~~~~~~~~~~~~~~~~~l~----~L~~~~~~~~~Lf~~~~~~ 373 (394)
-.............. ++ +| +.+|+..||....|.
T Consensus 164 ~~~~~~l~~~~~~~~-----l~~~~l~f--~~~e~~~ll~~~~~~ 201 (903)
T PRK04841 164 PLGIANLRVRDQLLE-----IGSQQLAF--DHQEAQQFFDQRLSS 201 (903)
T ss_pred CCchHhHHhcCccee-----cCHHhCCC--CHHHHHHHHHhccCC
Confidence 111000001122344 66 99 999999999876653
No 16
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=3.9e-07 Score=76.00 Aligned_cols=124 Identities=15% Similarity=0.020 Sum_probs=69.7
Q ss_pred ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120 189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS 268 (394)
Q Consensus 189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 268 (394)
.|++..+..+...+... ....+.|+|.+|+|||++++.+++. ....-..++++..+...........+.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~------- 69 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFG------- 69 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhh-------
Confidence 36777888888887653 3457889999999999999999984 322223455665444322111110000
Q ss_pred CCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHH---HhhCCCC---CCCcEEEEecCChH
Q 016120 269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDL---EELLPDD---ENGSRVLITVTDPD 332 (394)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l---~~~l~~~---~~gs~IivTTR~~~ 332 (394)
..............++.+||+||++. .......+ ...+... ..+..||+||....
T Consensus 70 ---------~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 70 ---------HFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00001111222345678999999996 11222223 2232221 35778888888653
No 17
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.62 E-value=7.1e-08 Score=84.72 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=31.7
Q ss_pred ccceecccHHHHHHHHhc-CCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIE-GPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.|+||+++++++...|.. .+...+.+.|+|.+|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 489999999999999942 2345689999999999999999999883
No 18
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.58 E-value=3.2e-07 Score=86.37 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=94.8
Q ss_pred ccceecccHHH--HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREE--LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~--i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+.||.+..+.+ ++..+.+. ..++.+.+||++|+||||||+.+.+...... ..+|..|-.-....-.++|+++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq-~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQ-NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHc-CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 55665543322 23333333 2577888999999999999999998433222 45676665433333333333321
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChHHHhhchhcC
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI--TVTDPDLLASLEMEN 341 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~~~~~~~~ 341 (394)
. -...+..+|..|.+|.|.. |..+-+ ..||.-.+|+-++| ||.|+..-.....-+
T Consensus 214 q-------------------~~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 214 Q-------------------NEKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred H-------------------HHHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHh
Confidence 1 0112456889999999987 453333 45677788887777 888885322221135
Q ss_pred CCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 342 GEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 342 ~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
...++- |++| +.++-..++.+.
T Consensus 272 RC~Vfv-----LekL--~~n~v~~iL~ra 293 (554)
T KOG2028|consen 272 RCRVFV-----LEKL--PVNAVVTILMRA 293 (554)
T ss_pred ccceeE-----eccC--CHHHHHHHHHHH
Confidence 678888 9999 999999999884
No 19
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.6e-06 Score=83.10 Aligned_cols=154 Identities=14% Similarity=0.221 Sum_probs=101.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC----cccccccCeeEEEEe-CCCCCHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN----DHVKFYFDCLAWVRV-SIAYDFGKMLDDII 261 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~i~~~i~ 261 (394)
+++|.+..++.+.+++..+. -.....++|+.|+||||+|+.++.. .....|.|...|... +....... .+++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 67898888899998886542 3457789999999999999888762 123456666555442 22222222 11222
Q ss_pred HHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120 262 KSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM 339 (394)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~ 339 (394)
+.+... -..+++-++|+|++.. +...++.+...+.....++.+|++|.+++ +....
T Consensus 83 ~~~~~~--------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI-- 140 (313)
T PRK05564 83 EEVNKK--------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI-- 140 (313)
T ss_pred HHHhcC--------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH--
Confidence 222111 0124556677777766 57889999999988888999998887664 22222
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....++ +.++ +.++....+.+.+
T Consensus 141 ~SRc~~~~-----~~~~--~~~~~~~~l~~~~ 165 (313)
T PRK05564 141 KSRCQIYK-----LNRL--SKEEIEKFISYKY 165 (313)
T ss_pred Hhhceeee-----CCCc--CHHHHHHHHHHHh
Confidence 23456888 9999 9999887776654
No 20
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=1e-06 Score=92.85 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=87.0
Q ss_pred ccceecccHH---HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGRE---ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~---~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|.+..+. .+.+.+..+ ....+.++|++|+||||||+.+++ ....+|.. ++.+. ....
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~~---lna~~-~~i~--------- 91 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHFSS---LNAVL-AGVK--------- 91 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCccee---ehhhh-hhhH---------
Confidence 8899888774 344444433 455678999999999999999998 44444411 11110 0000
Q ss_pred hCCCCCCccccCcCHHHHHHHHHHHc--cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChH--HHhh
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI--TVTDPD--LLAS 336 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--v~~~ 336 (394)
+.........+.+ .+++.+|+|||++. +...++.+...+ ..|+.+++ ||.++. +...
T Consensus 92 -------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 92 -------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhH
Confidence 1111222222222 24677999999987 566666666544 34555555 455542 2222
Q ss_pred chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
. .+...++. ++|| +.++...++.+.+.
T Consensus 156 L--~SR~~v~~-----l~pL--s~edi~~IL~~~l~ 182 (725)
T PRK13341 156 L--VSRSRLFR-----LKSL--SDEDLHQLLKRALQ 182 (725)
T ss_pred h--hcccccee-----cCCC--CHHHHHHHHHHHHH
Confidence 2 12355788 9999 99999999988653
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=1.4e-06 Score=90.34 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=98.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-------------------cCeeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-------------------FDCLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~v 247 (394)
+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+....... |...++++.
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 89999999999999987653 2445569999999999999988763211111 111222221
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGS 322 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs 322 (394)
+.+. ..+++.+.+... ..++.-++|||++.. +...|+.|...+-.-..+.
T Consensus 96 as~r-------------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 96 ASNR-------------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred cccc-------------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 1111 222333222221 134556889999998 5667888887776555677
Q ss_pred EEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 323 RVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 323 ~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
++|+||.+. .+...+ .+....++ +.++ +.++..+.+.+.++.
T Consensus 151 ~FILaTtd~~KIp~TI--rSRCq~f~-----Fk~L--s~eeIv~~L~~Il~~ 193 (830)
T PRK07003 151 KFILATTDPQKIPVTV--LSRCLQFN-----LKQM--PAGHIVSHLERILGE 193 (830)
T ss_pred EEEEEECChhhccchh--hhheEEEe-----cCCc--CHHHHHHHHHHHHHH
Confidence 877777664 444343 24456788 9999 999999888887653
No 22
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.51 E-value=1.5e-06 Score=84.03 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=91.6
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-cC-eeEEEEeCCCCCH-HHHHH---HH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-FD-CLAWVRVSIAYDF-GKMLD---DI 260 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~-~~i~~---~i 260 (394)
+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.+ ....+ +. ..+.++++.-... ...+. ..
T Consensus 16 ~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence 7899999999998888654 344577999999999999999887 33221 22 1234443321100 00000 00
Q ss_pred HHHhCCCCCCccccCc-CHHHHHHHHHH---Hc--cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-H
Q 016120 261 IKSVMPPSRVSVIIGE-DYQLKKSILRD---YL--TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-D 332 (394)
Q Consensus 261 ~~~l~~~~~~~~~~~~-~~~~~~~~l~~---~l--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~ 332 (394)
...++.... ... ..+.....+.. .. .+.+-+||+||+.. .......+...+....+.+++|+||.++ .
T Consensus 92 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 92 AHFLGTDKR----IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhhh----hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 000 11222222222 11 23455899999977 3444555655554444456788777543 3
Q ss_pred HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 333 LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 333 v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+...+ .+....+. +.|+ +.++....+.+.+
T Consensus 168 ~~~~L--~sr~~~v~-----~~~~--~~~~~~~~l~~~~ 197 (337)
T PRK12402 168 LIPPI--RSRCLPLF-----FRAP--TDDELVDVLESIA 197 (337)
T ss_pred Cchhh--cCCceEEE-----ecCC--CHHHHHHHHHHHH
Confidence 32323 23345667 8999 9999888888764
No 23
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.50 E-value=1.1e-06 Score=91.45 Aligned_cols=175 Identities=16% Similarity=0.102 Sum_probs=108.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccccc---CeeEEEEeCC---CCCHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF---DCLAWVRVSI---AYDFGKMLDDI 260 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~i~~~i 260 (394)
+++|++..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+.. ..+...+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred hceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 8999999999988887543 35578899999999999999998753322222 1234554432 12222221111
Q ss_pred ---------------HHHhCCCCCC-------------ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHH
Q 016120 261 ---------------IKSVMPPSRV-------------SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDL 311 (394)
Q Consensus 261 ---------------~~~l~~~~~~-------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l 311 (394)
+...+..... ..+++.=....+..+.+.+++++++++-|+.|. +...|+.+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 1111111000 012222123357788888888999999877776 45678888
Q ss_pred HhhCCCCCCCcEEEE--ecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 312 EELLPDDENGSRVLI--TVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 312 ~~~l~~~~~gs~Iiv--TTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
...+....+...|++ ||+++. +...+ .+....+. +.|+ +.+|.+.++.+.+.
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aL--rSR~~~i~-----~~pl--s~edi~~Il~~~a~ 367 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPAL--RSRCAEVF-----FEPL--TPEDIALIVLNAAE 367 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHH--HhceeEEE-----eCCC--CHHHHHHHHHHHHH
Confidence 877776666655666 666543 22222 12334667 9999 99999999998754
No 24
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.47 E-value=2.2e-07 Score=89.72 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=64.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCC--CHHHHHHHHHHHhCCCCCCcccc
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAY--DFGKMLDDIIKSVMPPSRVSVII 274 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~ 274 (394)
++++.+..-..+ ....|+|++|+||||||+.+|++.... ||++++||.+++.. .+.+++.++...+-.. ..
T Consensus 158 rvID~l~PIGkG-QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s-----t~ 230 (416)
T PRK09376 158 RIIDLIAPIGKG-QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS-----TF 230 (416)
T ss_pred eeeeeecccccC-ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE-----CC
Confidence 445555443323 355789999999999999999964444 89999999999987 7777777776211111 11
Q ss_pred Cc-CH------HHHHHHHHHH-ccCCeEEEEEeCCCC
Q 016120 275 GE-DY------QLKKSILRDY-LTNKKYFIVLDDVFD 303 (394)
Q Consensus 275 ~~-~~------~~~~~~l~~~-l~~kr~LlVlDdv~~ 303 (394)
+. .. ....+.-..+ -.|++.+|++|++..
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11 11 1111112222 267999999999964
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=4.3e-06 Score=81.83 Aligned_cols=168 Identities=10% Similarity=-0.007 Sum_probs=93.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+......... ..+...-....++......
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCCC
Confidence 89999999999988887642 345678999999999999999976321111000 0000000000111000000
Q ss_pred CCCCccccCc-CHHHH---HHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchh
Q 016120 267 PSRVSVIIGE-DYQLK---KSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEM 339 (394)
Q Consensus 267 ~~~~~~~~~~-~~~~~---~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~ 339 (394)
.-......+. ..++. .+.+... ..+++-++|+|++.. +...++.+...+.......++|++|.+. .+...+
T Consensus 89 d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI-- 166 (363)
T PRK14961 89 DLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI-- 166 (363)
T ss_pred ceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH--
Confidence 0000000000 12222 2211111 124566999999988 5556777877776656667777766553 444333
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....++ +.|+ +.++....+.+.+
T Consensus 167 ~SRc~~~~-----~~~l--~~~el~~~L~~~~ 191 (363)
T PRK14961 167 LSRCLQFK-----LKII--SEEKIFNFLKYIL 191 (363)
T ss_pred HhhceEEe-----CCCC--CHHHHHHHHHHHH
Confidence 23456788 9999 9999888877753
No 26
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.46 E-value=1.5e-06 Score=85.06 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=90.0
Q ss_pred ccceecccHHHHHHHHhcC--C---------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG--P---------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|++..+++|.+.+... . ...+-+.++|++|+|||++|+.+++ +...+| +.+.. ..
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~----~~ 191 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG----SE 191 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----HH
Confidence 8999999999998877432 1 1245588999999999999999998 444443 22211 11
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------ch---hHHHHHhhCCC--C
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SE---IWSDLEELLPD--D 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~---~~~~l~~~l~~--~ 318 (394)
+ ..... ......+...+...-...+.+|+||+++. . .. .+..+...+.. .
T Consensus 192 l----~~~~~---------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 192 L----VRKYI---------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred H----HHHhh---------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1 11100 00111112222222234678999999875 0 11 12233322221 1
Q ss_pred CCCcEEEEecCChHHHh-hchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 319 ENGSRVLITVTDPDLLA-SLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~-~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
..+.+||.||...+... .+.. ......+. +++. +.++..++|+.+.....
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~-----v~~P--~~~~r~~Il~~~~~~~~ 310 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIE-----VPLP--DFEGRLEILKIHTRKMK 310 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEE-----eCCc--CHHHHHHHHHHHHhcCC
Confidence 34567888887653221 1100 01245677 9999 99999999988754433
No 27
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=4.1e-06 Score=84.77 Aligned_cols=172 Identities=10% Similarity=-0.015 Sum_probs=98.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCe-eEEEEeCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC-LAWVRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~ 265 (394)
+++|.+..+..+...+..+. -...+.++|+.|+||||+|+.+++.......... ..+... ..-.....+.....
T Consensus 22 dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHHhcCCC
Confidence 89999999988888776542 3456789999999999999999763211110000 000000 00000000100000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhch
Q 016120 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLE 338 (394)
Q Consensus 266 ~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~ 338 (394)
.........+. ..+++...+... +.+++-++|+|+++. +...|+.|...+......+.+|+ ||+.+.+...+
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI- 175 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI- 175 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH-
Confidence 00000000011 233333322222 245677899999998 66778888888776556666554 55656666555
Q ss_pred hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.+....++ +.++ +.++....+.+.+.
T Consensus 176 -~SRc~~~e-----f~~l--s~~el~~~L~~i~~ 201 (507)
T PRK06645 176 -ISRCQRYD-----LRRL--SFEEIFKLLEYITK 201 (507)
T ss_pred -HhcceEEE-----ccCC--CHHHHHHHHHHHHH
Confidence 23456788 9999 99999999988764
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.41 E-value=9.2e-07 Score=84.44 Aligned_cols=165 Identities=14% Similarity=-0.000 Sum_probs=90.4
Q ss_pred ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+|+|++..++++..++... ......+.++|++|+|||+||+.+.+ +....+ ..+..+..... ..+...+..
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~~~~~~~~-~~l~~~l~~ 78 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITSGPALEKP-GDLAAILTN 78 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEeccchhcCc-hhHHHHHHh
Confidence 7899999999998888642 22355678999999999999999998 333222 11221111111 122222333
Q ss_pred hCCCCCC-ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCC
Q 016120 264 VMPPSRV-SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENG 342 (394)
Q Consensus 264 l~~~~~~-~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~ 342 (394)
++...-. ..+++.-.....+.+...+.+.+..+|+++..+ ...|. ..+ .+.+-|..||+...+...+. ...
T Consensus 79 ~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~-~~~~~---~~~---~~~~li~~t~~~~~l~~~l~-sR~ 150 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPS-ARSVR---LDL---PPFTLVGATTRAGMLTSPLR-DRF 150 (305)
T ss_pred cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcc-cccee---ecC---CCeEEEEecCCccccCHHHH-hhc
Confidence 3221100 011111011223445555555555666666555 32221 112 22455666777654444321 012
Q ss_pred CceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 343 EKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
...++ ++++ +.++..+++.+.++
T Consensus 151 ~~~~~-----l~~l--~~~e~~~il~~~~~ 173 (305)
T TIGR00635 151 GIILR-----LEFY--TVEELAEIVSRSAG 173 (305)
T ss_pred ceEEE-----eCCC--CHHHHHHHHHHHHH
Confidence 34567 9999 99999999998765
No 29
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=2.4e-06 Score=77.79 Aligned_cols=141 Identities=17% Similarity=0.124 Sum_probs=81.0
Q ss_pred ccce--ecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINE--FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~G--r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+|++ .+..++.+.+++.. .....+.|+|++|+|||+||+.+++. ........++++++.-.+ .
T Consensus 16 ~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~----- 80 (226)
T TIGR03420 16 NFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------A----- 80 (226)
T ss_pred CcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------h-----
Confidence 4542 33456666666543 23567889999999999999999873 332333445554322110 0
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cch-hH-HHHHhhCCC-CCCCcEEEEecCChH--------
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSE-IW-SDLEELLPD-DENGSRVLITVTDPD-------- 332 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~-~~-~~l~~~l~~-~~~gs~IivTTR~~~-------- 332 (394)
. ..+...+.+ .-+|||||++. +.. .| +.+...+.. ...+..+|+||+...
T Consensus 81 -------------~----~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 81 -------------D----PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred -------------H----HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 0 011111222 23899999987 221 23 344443322 123457888887532
Q ss_pred -HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 333 -LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 333 -v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
+...+ .....++ ++|+ +.++...++.+.
T Consensus 143 ~L~~r~---~~~~~i~-----l~~l--~~~e~~~~l~~~ 171 (226)
T TIGR03420 143 DLRTRL---AWGLVFQ-----LPPL--SDEEKIAALQSR 171 (226)
T ss_pred HHHHHH---hcCeeEe-----cCCC--CHHHHHHHHHHH
Confidence 12222 2245788 9999 999999998875
No 30
>PRK08727 hypothetical protein; Validated
Probab=98.39 E-value=4.3e-06 Score=76.66 Aligned_cols=122 Identities=14% Similarity=0.017 Sum_probs=72.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
...+.|+|..|+|||+|++.+++ ...+....+.++++.+. .. ... ..+. .
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~~------~~------------------~~~---~~~~-~ 90 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQAA------AG------------------RLR---DALE-A 90 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHHh------hh------------------hHH---HHHH-H
Confidence 34589999999999999999988 34433334566653221 00 001 1111 1
Q ss_pred ccCCeEEEEEeCCCC--CchhHHH-HHhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCceeeCCccCCCC
Q 016120 289 LTNKKYFIVLDDVFD--NSEIWSD-LEELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKIRRDSVLFGGP 355 (394)
Q Consensus 289 l~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l~~ 355 (394)
+ .+.-+|||||+.. ....|.. +...+.. ..+|..||+|++.. ++...+ ....+++ +++
T Consensus 91 l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl---~~~~~~~-----l~~ 161 (233)
T PRK08727 91 L-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL---AQCIRIG-----LPV 161 (233)
T ss_pred H-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH---hcCceEE-----ecC
Confidence 1 1235899999986 1233432 2222211 13466799999853 222222 2345788 999
Q ss_pred CCCChHHHHHHHHHHh
Q 016120 356 LIRLKHEAWQFFILHY 371 (394)
Q Consensus 356 L~~~~~~~~~Lf~~~~ 371 (394)
+ +.++-..++.+++
T Consensus 162 ~--~~e~~~~iL~~~a 175 (233)
T PRK08727 162 L--DDVARAAVLRERA 175 (233)
T ss_pred C--CHHHHHHHHHHHH
Confidence 9 9999999999864
No 31
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.4e-06 Score=85.14 Aligned_cols=153 Identities=8% Similarity=-0.004 Sum_probs=95.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc----c---------------cccCeeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV----K---------------FYFDCLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~---------------~~F~~~~wv~v 247 (394)
+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++...- . ..|...+++..
T Consensus 17 diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 89999999999998886642 3455778999999999999999762110 0 01112222221
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL 325 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii 325 (394)
.....+. +...+.+.+... ..+++-++|+|++.. +...++.|...+-.....+++|
T Consensus 96 as~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 96 ASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred ccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 1111111 222333333222 235667999999987 6677888888887665566666
Q ss_pred E-ecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 326 I-TVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 326 v-TTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+ ||....+...+ .+...+++ +.++ +.++....+.+.+
T Consensus 154 L~Ttd~~kil~tI--~SRc~~~~-----f~~L--s~~eI~~~L~~il 191 (546)
T PRK14957 154 LATTDYHKIPVTI--LSRCIQLH-----LKHI--SQADIKDQLKIIL 191 (546)
T ss_pred EEECChhhhhhhH--HHheeeEE-----eCCC--CHHHHHHHHHHHH
Confidence 5 44444444333 24467888 9999 9998877777654
No 32
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=4.2e-06 Score=85.76 Aligned_cols=171 Identities=8% Similarity=-0.040 Sum_probs=97.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc---ccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF---YFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|.+..+..|.+.+..+. -...+.++|..|+||||+|+.+.+.....+ .... .+..+..-.....|...
T Consensus 17 dVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHHHHHHcC
Confidence 89999999999999887653 334667899999999999998876311100 0000 00000000000111000
Q ss_pred hCCCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhh
Q 016120 264 VMPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLAS 336 (394)
Q Consensus 264 l~~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~ 336 (394)
-..........+. ..+++.+.+... ..++.-++|||++.. +...++.|...+-.-..++++|+ ||....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0000000000011 233333333322 145667999999998 67788888887765555566555 5555566555
Q ss_pred chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
+ .+....++ +.++ +.++..+.+.+.++
T Consensus 171 I--rSRCq~f~-----f~~l--s~eei~~~L~~Il~ 197 (700)
T PRK12323 171 V--LSRCLQFN-----LKQM--PPGHIVSHLDAILG 197 (700)
T ss_pred H--HHHHHhcc-----cCCC--ChHHHHHHHHHHHH
Confidence 4 24456788 9999 99998888887654
No 33
>PTZ00202 tuzin; Provisional
Probab=98.35 E-value=3.8e-05 Score=75.11 Aligned_cols=161 Identities=11% Similarity=0.011 Sum_probs=102.7
Q ss_pred ccceecccHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGP-SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 265 (394)
.|+||+.+..++...|...+ ...+++.|+|++|+|||||++.+... .. + . .++.-+. +..+++..++..++
T Consensus 263 ~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~-~-qL~vNpr--g~eElLr~LL~ALG 334 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M-P-AVFVDVR--GTEDTLRSVVKALG 334 (550)
T ss_pred CCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c-e-EEEECCC--CHHHHHHHHHHHcC
Confidence 89999999999999986543 23568999999999999999999873 22 1 1 3332222 67999999999999
Q ss_pred CCCCCccccCcCHHHHHHHHHHHc-----c-CCeEEEEEeCCCCCchhHHHHH---hhCCCCCCCcEEEEecCChHHHhh
Q 016120 266 PPSRVSVIIGEDYQLKKSILRDYL-----T-NKKYFIVLDDVFDNSEIWSDLE---ELLPDDENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~l~---~~l~~~~~gs~IivTTR~~~v~~~ 336 (394)
.+.. . ...++...+.+.+ . |++.+||+-= .+ .+.+..+. ..|.+...-|+|++-.-.+.+...
T Consensus 335 V~p~----~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-re-g~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 335 VPNV----E--ACGDLLDFISEACRRAKKMNGETPLLVLKL-RE-GSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred CCCc----c--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cC-CCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 7432 1 2333444444433 2 6667776653 22 22222221 345566667889987665543322
Q ss_pred chhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
.-..+.-..|. ++++ +.++|...-.+.
T Consensus 407 ~~~lprldf~~-----vp~f--sr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYL-----VPNF--SRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEe-----cCCC--CHHHHHHHHhhc
Confidence 21123445666 8999 888877655543
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=7e-06 Score=83.34 Aligned_cols=170 Identities=12% Similarity=-0.039 Sum_probs=98.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+..++.|..++..+. -...+.++|++|+||||+|+.+++.....+.+...+|.|.+... +......-+..+..
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~ 92 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDA 92 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEecc
Confidence 88999998888888887653 33456899999999999999998743222223223343321100 00000000000000
Q ss_pred CCCCccccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC-ChHHHhhchhcCC
Q 016120 267 PSRVSVIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVT-DPDLLASLEMENG 342 (394)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~~~~~~~ 342 (394)
.. .... +..++...+... ..+++-++|+|+++. +...++.+...+.....++.+|++|. ...+...+ .+.
T Consensus 93 ~~----~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I--~SR 166 (504)
T PRK14963 93 AS----NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI--LSR 166 (504)
T ss_pred cc----cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH--hcc
Confidence 00 0000 222222222221 235667899999987 56678888887766555556555554 34443333 234
Q ss_pred CceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 343 EKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
...++ +.++ +.++....+.+.+
T Consensus 167 c~~~~-----f~~l--s~~el~~~L~~i~ 188 (504)
T PRK14963 167 TQHFR-----FRRL--TEEEIAGKLRRLL 188 (504)
T ss_pred eEEEE-----ecCC--CHHHHHHHHHHHH
Confidence 56788 9999 9999999998874
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.35 E-value=2.9e-06 Score=81.88 Aligned_cols=166 Identities=13% Similarity=0.006 Sum_probs=87.6
Q ss_pred ccceecccHHHHHHHHhc---CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIE---GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+|+|++..++.+...+.. .+.....+.++|++|+|||+||+.+++ +....+ .++..+ .......+..++..
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~---~~~~~~-~~~~~~~l~~~l~~ 99 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVNI---RITSGP-ALEKPGDLAAILTN 99 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCCe---EEEecc-cccChHHHHHHHHh
Confidence 899999999998887754 233456778999999999999999998 333222 112111 11112222333333
Q ss_pred hCCCCCC-ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCC
Q 016120 264 VMPPSRV-SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENG 342 (394)
Q Consensus 264 l~~~~~~-~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~ 342 (394)
+....-. ..+++.-.....+.+...+.+.+..+|+|+..+ ... +...+ .+.+-|..||+...+...+. ...
T Consensus 100 l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~-~~~---~~~~l---~~~~li~at~~~~~l~~~L~-sRf 171 (328)
T PRK00080 100 LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPA-ARS---IRLDL---PPFTLIGATTRAGLLTSPLR-DRF 171 (328)
T ss_pred cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcc-ccc---eeecC---CCceEEeecCCcccCCHHHH-Hhc
Confidence 3211100 000111001122233344444445555555443 211 01111 22455666777554433321 011
Q ss_pred CceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 343 EKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
...++ ++++ +.++..+++.+.++.
T Consensus 172 ~~~~~-----l~~~--~~~e~~~il~~~~~~ 195 (328)
T PRK00080 172 GIVQR-----LEFY--TVEELEKIVKRSARI 195 (328)
T ss_pred Ceeee-----cCCC--CHHHHHHHHHHHHHH
Confidence 34677 9999 999999999988653
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=5.9e-06 Score=87.40 Aligned_cols=153 Identities=12% Similarity=-0.010 Sum_probs=96.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-------------------cCeeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-------------------FDCLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~v 247 (394)
+++|.+..+..|.+++..+. -...+.++|+.|+||||+|+.+++....... |.-.+++..
T Consensus 17 dIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 89999999999988887642 2345579999999999999999873211110 001111111
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL 325 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii 325 (394)
+....+. +...+.+.+... ..+++-++|||++.. +...++.|...+-.-..+.++|
T Consensus 96 as~~kVD----------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 96 ASRTKVD----------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred ccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 1000000 222233222221 246777999999998 6777888877776555566666
Q ss_pred EecC-ChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 326 ITVT-DPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 326 vTTR-~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
++|. ...+...+ .+....|+ +.+| +.++....+.+.+
T Consensus 154 LaTTe~~kLl~TI--lSRCq~f~-----fkpL--s~eEI~~~L~~il 191 (944)
T PRK14949 154 LATTDPQKLPVTV--LSRCLQFN-----LKSL--TQDEIGTQLNHIL 191 (944)
T ss_pred EECCCchhchHHH--HHhheEEe-----CCCC--CHHHHHHHHHHHH
Confidence 6554 44555443 23457788 9999 9999998888764
No 37
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6e-06 Score=80.48 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=112.8
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccccC-e-eEEEEeCCCCCHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD-C-LAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~i~~~i~~ 262 (394)
.+.+|+.+++++...|..- +....-+.|+|..|+|||+.++.+.. +++.... . +++|++-...++..++..|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 6889999999999888653 22333488999999999999999998 5544432 1 689999999999999999999
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHHHcc--CCeEEEEEeCCCC--CchhHHHHHhhCCCCC-CCcEEEE--ecCChHHHh
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRDYLT--NKKYFIVLDDVFD--NSEIWSDLEELLPDDE-NGSRVLI--TVTDPDLLA 335 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~-~gs~Iiv--TTR~~~v~~ 335 (394)
+++.... ......+....+.+.+. ++.+++|||++.. +... +.+...+.... ++++|++ .+-+..+..
T Consensus 96 ~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 96 KLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 9973322 22266777777777774 5889999999987 2211 33333333222 2454333 344433333
Q ss_pred hch----hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 336 SLE----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 336 ~~~----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+. +.-....+. .+|= +.++-...+..++
T Consensus 171 ~ld~rv~s~l~~~~I~-----F~pY--~a~el~~Il~~R~ 203 (366)
T COG1474 171 YLDPRVKSSLGPSEIV-----FPPY--TAEELYDILRERV 203 (366)
T ss_pred HhhhhhhhccCcceee-----eCCC--CHHHHHHHHHHHH
Confidence 221 001122255 7777 7888777777663
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=98.31 E-value=6.5e-06 Score=79.18 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=88.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCe-eEEEEeCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC-LAWVRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~ 265 (394)
+++|.++.++.|..++..+ +.+.+.++|++|+||||+|+.+++.. ....|.. ++-++.+...... ..+++++...
T Consensus 14 ~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHHHH
Confidence 8899988888887776654 34456799999999999999998731 1122221 1112222221111 1111111110
Q ss_pred CCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchhcCC
Q 016120 266 PPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEMENG 342 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~ 342 (394)
.... .+ .++.-+++||++.. +......+...+-.-.+.+++++++.. ..+...+ .+.
T Consensus 90 ~~~~------------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L--~SR 149 (319)
T PLN03025 90 QKKV------------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI--QSR 149 (319)
T ss_pred hccc------------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH--HHh
Confidence 0000 01 24567899999988 444555565555433455677776643 2332222 123
Q ss_pred CceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 343 EKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
..+++ +.++ +.++....+.+.+.
T Consensus 150 c~~i~-----f~~l--~~~~l~~~L~~i~~ 172 (319)
T PLN03025 150 CAIVR-----FSRL--SDQEILGRLMKVVE 172 (319)
T ss_pred hhccc-----CCCC--CHHHHHHHHHHHHH
Confidence 45677 9999 99998888887653
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.31 E-value=1.4e-05 Score=83.87 Aligned_cols=175 Identities=10% Similarity=-0.017 Sum_probs=105.1
Q ss_pred ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCccc---ccccC--eeEEEEeCCCCCHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHV---KFYFD--CLAWVRVSIAYDFGKMLD 258 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~i~~ 258 (394)
.+.||++++++|...|... .....++-|+|++|.|||++++.|....+. +.... .+++|+...-.+...++.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 6889999999999888652 223356779999999999999999873211 11122 246777766677888999
Q ss_pred HHHHHhCCCCCCccccCc-CHHHHHHHHHHHcc---CCeEEEEEeCCCC-CchhHHHHHhhCC-CCCCCcEEEE--ecCC
Q 016120 259 DIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT---NKKYFIVLDDVFD-NSEIWSDLEELLP-DDENGSRVLI--TVTD 330 (394)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~---~kr~LlVlDdv~~-~~~~~~~l~~~l~-~~~~gs~Iiv--TTR~ 330 (394)
.|..++....+ ... ........+...+. ....+||||+|.. ....-+.|...+. ....+++|++ +|.+
T Consensus 836 vI~qqL~g~~P----~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 836 VLYKQLFNKKP----PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHcCCCC----CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 99998855433 122 33445555555542 2346899999987 1111122222221 1124556554 3332
Q ss_pred hHHH----hhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 331 PDLL----ASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 331 ~~v~----~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
-+.. ..+.+.-....+. .+|. +.++-..++.+++.
T Consensus 912 lDLperLdPRLRSRLg~eeIv-----F~PY--TaEQL~dILk~RAe 950 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLV-----FSPY--KGDEIEKIIKERLE 950 (1164)
T ss_pred hhcchhhhhhhhhcccccccc-----CCCC--CHHHHHHHHHHHHH
Confidence 1111 1110001123355 8999 99999999998864
No 40
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.3e-05 Score=80.79 Aligned_cols=153 Identities=7% Similarity=0.019 Sum_probs=89.2
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc--ccC-----------------eeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF--YFD-----------------CLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~-----------------~~~wv~v 247 (394)
+++|.+.....|...+..+. -...+.++|++|+||||+|+.+.+...... .+. ....++.
T Consensus 15 divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 89999888777777766542 335578999999999999999976311110 000 1111121
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL 325 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii 325 (394)
+...... +...+.+..... ..+++-++|+|++.. +....+.+...+........+|
T Consensus 94 a~~~gid----------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 94 ASNRGID----------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred cccCCHH----------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 1111111 111111111111 234667999999987 4555667776665444445444
Q ss_pred EecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 326 ITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 326 vTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
++|.+ ..+...+ .+...+++ +.++ +.++....+.+.+
T Consensus 152 lattn~~kl~~~L--~SR~~vv~-----f~~l--~~~el~~~L~~i~ 189 (472)
T PRK14962 152 LATTNLEKVPPTI--ISRCQVIE-----FRNI--SDELIIKRLQEVA 189 (472)
T ss_pred EEeCChHhhhHHH--hcCcEEEE-----ECCc--cHHHHHHHHHHHH
Confidence 44444 3454444 24556788 9999 9999888887764
No 41
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=9.7e-06 Score=83.33 Aligned_cols=169 Identities=12% Similarity=0.041 Sum_probs=96.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+.....|.+++..+. -...+.++|+.|+||||+|+.+.+...... |+.. ..+..-...+.+...-..
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNEGRFI 87 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhcCCCC
Confidence 89999999999999987653 345778999999999999998876311110 1100 000000000111100000
Q ss_pred CCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchh
Q 016120 267 PSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEM 339 (394)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~ 339 (394)
.--.....+. ..++..+.+... ..++.-++|+|++.. +...++.|...+-....+.++|++|.+. .+....
T Consensus 88 DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI-- 165 (702)
T PRK14960 88 DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV-- 165 (702)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH--
Confidence 0000000001 222222222211 235667899999998 5667788887776655667777777653 333332
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.+....++ +.++ +.++....+.+.+.
T Consensus 166 lSRCq~fe-----FkpL--s~eEI~k~L~~Il~ 191 (702)
T PRK14960 166 ISRCLQFT-----LRPL--AVDEITKHLGAILE 191 (702)
T ss_pred HHhhheee-----ccCC--CHHHHHHHHHHHHH
Confidence 13456788 9999 99998888877653
No 42
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.29 E-value=1.4e-05 Score=76.52 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=89.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe--CCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV--SIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l 264 (394)
+++|++..++.+..++.... .+.+.++|.+|+||||+|+.+.+.. ....+.. .++.+ +....... ..+.+..+
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~~-~~~~i~~~ 92 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGIDV-IRNKIKEF 92 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchHH-HHHHHHHH
Confidence 89999999999999886543 4457899999999999999998731 1111211 12222 22111111 11111111
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCC
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENG 342 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~ 342 (394)
....+ .....+-++++|++.. ....+..+...+......+++|+++... .+.... ...
T Consensus 93 ~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l--~sr 152 (319)
T PRK00440 93 ARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI--QSR 152 (319)
T ss_pred HhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhH--HHH
Confidence 00000 0012356899999877 3445566766665555556777766432 222222 122
Q ss_pred CceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 343 EKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
...++ +.++ +.++....+.+.+.
T Consensus 153 ~~~~~-----~~~l--~~~ei~~~l~~~~~ 175 (319)
T PRK00440 153 CAVFR-----FSPL--KKEAVAERLRYIAE 175 (319)
T ss_pred hheee-----eCCC--CHHHHHHHHHHHHH
Confidence 34677 9999 99988888877653
No 43
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.28 E-value=2.5e-06 Score=82.84 Aligned_cols=93 Identities=12% Similarity=-0.010 Sum_probs=61.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC--CCHHHHHHHHHHHhCCCCCCccccCc-C-HHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA--YDFGKMLDDIIKSVMPPSRVSVIIGE-D-YQLKKSIL 285 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~-~-~~~~~~~l 285 (394)
..++|+|++|+|||||++.+++.... +||+..+||.++++ .++.+++..++..+-........... . .....+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 46789999999999999999995333 37999999999976 78999999884332222110000000 1 11222222
Q ss_pred HHH-ccCCeEEEEEeCCCC
Q 016120 286 RDY-LTNKKYFIVLDDVFD 303 (394)
Q Consensus 286 ~~~-l~~kr~LlVlDdv~~ 303 (394)
... -.|++.+|++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 222 258999999999974
No 44
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.25 E-value=8.5e-06 Score=74.82 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=72.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
...+.|+|+.|+|||+|++.+++ .....-..+.++++..... ......+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~------------------------~~~~~~~~~--- 95 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW------------------------FVPEVLEGM--- 95 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh------------------------hhHHHHHHh---
Confidence 45788999999999999999988 3333223445665432100 011111111
Q ss_pred ccCCeEEEEEeCCCC--CchhHHHHH-hhCCC-CCCC-cEEEEecCCh---------HHHhhchhcCCCceeeCCccCCC
Q 016120 289 LTNKKYFIVLDDVFD--NSEIWSDLE-ELLPD-DENG-SRVLITVTDP---------DLLASLEMENGEKIRRDSVLFGG 354 (394)
Q Consensus 289 l~~kr~LlVlDdv~~--~~~~~~~l~-~~l~~-~~~g-s~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l~ 354 (394)
. +--+|++||+.. ....|+... ..+.. ...| .++|+||+.+ ++...+ ....+++ ++
T Consensus 96 -~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl---~~g~~~~-----l~ 165 (235)
T PRK08084 96 -E-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL---DWGQIYK-----LQ 165 (235)
T ss_pred -h-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH---hCCceee-----ec
Confidence 1 123789999976 234454322 22211 1233 4699998865 333333 4557888 99
Q ss_pred CCCCChHHHHHHHHHHh
Q 016120 355 PLIRLKHEAWQFFILHY 371 (394)
Q Consensus 355 ~L~~~~~~~~~Lf~~~~ 371 (394)
++ +.++-.+++.+++
T Consensus 166 ~~--~~~~~~~~l~~~a 180 (235)
T PRK08084 166 PL--SDEEKLQALQLRA 180 (235)
T ss_pred CC--CHHHHHHHHHHHH
Confidence 99 9999999988764
No 45
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2e-05 Score=77.62 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=93.0
Q ss_pred ccceecccHHHHHHHHhcCCC--------CceEEEEEcCCCccHHHHHHHHhcCcccccc--cC---ee--EEEEeCCCC
Q 016120 187 DINEFERGREELFDLLIEGPS--------GLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FD---CL--AWVRVSIAY 251 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~---~~--~wv~vs~~~ 251 (394)
+++|.+..++.|.+.+..+.. -...+.++|+.|+|||++|+.+....--... -. |. .++.-...+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 688999999999998876421 2456789999999999999888652100000 00 00 000000111
Q ss_pred CHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE
Q 016120 252 DFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI 326 (394)
Q Consensus 252 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv 326 (394)
++..+ ..... .+ ..+++.+..... ..+++-++++|++.. +....+.|...+-....++.+|+
T Consensus 86 D~~~i--------~~~~~---~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 86 DVRVV--------APEGL---SI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred CEEEe--------ccccc---cC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 10000 00000 00 222222222111 124556888899998 66666777777655555666666
Q ss_pred ecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 327 TVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 327 TTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+|.+. .+...+ .+....++ +.++ +.++....+.+..
T Consensus 153 ~a~~~~~llpTI--rSRc~~i~-----f~~~--~~~~i~~~L~~~~ 189 (394)
T PRK07940 153 CAPSPEDVLPTI--RSRCRHVA-----LRTP--SVEAVAEVLVRRD 189 (394)
T ss_pred EECChHHChHHH--HhhCeEEE-----CCCC--CHHHHHHHHHHhc
Confidence 66654 555454 24467888 9999 9999988887543
No 46
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.22 E-value=1.8e-05 Score=78.18 Aligned_cols=158 Identities=14% Similarity=0.170 Sum_probs=89.0
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|++..++++.+.+... -...+-+.++|++|+|||++|+.+++ +...+ |+.++. ..
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~----~~ 200 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG----SE 200 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh----HH
Confidence 8899999999998876421 12355678999999999999999998 33332 232211 11
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------chhHHHHHhhCC---C--C
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SEIWSDLEELLP---D--D 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l~---~--~ 318 (394)
+ .....+. ....+...+...-...+.+|+||++.. . ...+..+...+. . .
T Consensus 201 l----~~~~~g~---------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 201 L----VQKFIGE---------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred H----hHhhccc---------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1 1111110 111222222222234678999999975 0 111222333221 1 1
Q ss_pred CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
..+..||.||...+.....-.. .-...+. +++. +.++-.++|+.++...+
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~-----v~~P--~~~~R~~Il~~~~~~~~ 319 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIE-----VPLP--DEEGRLEILKIHTRKMN 319 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEE-----ECCC--CHHHHHHHHHHHhccCC
Confidence 2355677777765422211001 1245677 9999 99999999988765433
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.3e-05 Score=81.04 Aligned_cols=172 Identities=8% Similarity=0.006 Sum_probs=95.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc--cCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|-+..+..|.+++..+. -...+.++|..|+||||+|+.+.+..-.... ...... ..+..-..-..|...-
T Consensus 17 dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 89998888888888887653 3456689999999999999988542110000 000000 0000001111110000
Q ss_pred CCCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHHHhhc
Q 016120 265 MPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDLLASL 337 (394)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~ 337 (394)
..........+. ..++..+.+... ..++.-++|||+|.. +...++.+...+-.-...+++|++| ....+....
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 000000000011 233333333221 124556899999998 6777888888876655566666555 444444333
Q ss_pred hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.+....++ +.+| +.++....+.+.+.
T Consensus 172 --lSRc~~~~-----f~~L--s~eei~~~L~~i~~ 197 (618)
T PRK14951 172 --LSRCLQFN-----LRPM--APETVLEHLTQVLA 197 (618)
T ss_pred --HHhceeee-----cCCC--CHHHHHHHHHHHHH
Confidence 24467788 9999 99988888877654
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.21 E-value=1.8e-05 Score=80.47 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=90.8
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|.+..++++.+|+..- +...+.+.|+|++|+||||+|+.+++. .. |+. +-++.+..... .....++...
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~~-ielnasd~r~~-~~i~~~i~~~ 88 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WEV-IELNASDQRTA-DVIERVAGEA 88 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CCE-EEEcccccccH-HHHHHHHHHh
Confidence 8999999999999998652 223678889999999999999999984 32 222 22344432222 2223333222
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc----hhHHHHHhhCCCCCCCcEEEEecCCh-HHHh-hc
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS----EIWSDLEELLPDDENGSRVLITVTDP-DLLA-SL 337 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~----~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~-~~ 337 (394)
..... ....++-+||||+++. .. ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 89 ~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 89 ATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred hccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 11100 0113678999999987 21 335566555542 234466666443 2211 12
Q ss_pred hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
......++ +.++ +.++....+.+.+
T Consensus 149 --rsr~~~I~-----f~~~--~~~~i~~~L~~i~ 173 (482)
T PRK04195 149 --RNACLMIE-----FKRL--STRSIVPVLKRIC 173 (482)
T ss_pred --hccceEEE-----ecCC--CHHHHHHHHHHHH
Confidence 13345677 9999 9988888887764
No 49
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=2.7e-05 Score=71.05 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=68.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
.+.+.|+|+.|+|||+|++.+++.. . ..+++.. ....+++ ..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~------~~~~~~~-------------------------~~ 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN------EIGSDAA-------------------------NA 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH------HcchHHH-------------------------Hh
Confidence 4568999999999999999988732 1 1233221 1101111 11
Q ss_pred ccCCeEEEEEeCCCC---CchhHHHHHhhCCCCCCCcEEEEecCC---------hHHHhhchhcCCCceeeCCccCCCCC
Q 016120 289 LTNKKYFIVLDDVFD---NSEIWSDLEELLPDDENGSRVLITVTD---------PDLLASLEMENGEKIRRDSVLFGGPL 356 (394)
Q Consensus 289 l~~kr~LlVlDdv~~---~~~~~~~l~~~l~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~~~~~~~~~l~~L 356 (394)
+.+ -+|++||+.. +...+-.+...+. ..|..||+|++. ++....+ ....+++ ++++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl---~~gl~~~-----l~~p 153 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRL---KAATVVE-----IGEP 153 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHH---hCCceee-----cCCC
Confidence 111 2788899965 1223333333322 346678988873 3344444 4567888 9999
Q ss_pred CCChHHHHHHHHHHhC
Q 016120 357 IRLKHEAWQFFILHYG 372 (394)
Q Consensus 357 ~~~~~~~~~Lf~~~~~ 372 (394)
+.++-..++.+++.
T Consensus 154 --d~e~~~~iL~~~~~ 167 (226)
T PRK09087 154 --DDALLSQVIFKLFA 167 (226)
T ss_pred --CHHHHHHHHHHHHH
Confidence 99999999998864
No 50
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=6.5e-05 Score=66.43 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120 291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI 368 (394)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~ 368 (394)
+.+-++|+||+.. +...++.+...+....+.+.+|++|++. .+...+ .+...+++ +.|+ +.++..+.+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i--~sr~~~~~-----~~~~--~~~~~~~~l~ 165 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI--RSRCQVLP-----FPPL--SEEALLQWLI 165 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH--HhhcEEee-----CCCC--CHHHHHHHHH
Confidence 4667899999987 5667788888886666667777777654 333333 23456788 9999 9999888777
Q ss_pred HH
Q 016120 369 LH 370 (394)
Q Consensus 369 ~~ 370 (394)
+.
T Consensus 166 ~~ 167 (188)
T TIGR00678 166 RQ 167 (188)
T ss_pred Hc
Confidence 65
No 51
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.17 E-value=2.7e-05 Score=74.68 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=83.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+...+.+..++..+ .....+.++|++|+|||++|+.+++. .... ...++.+. ..... ..+.+...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~~-i~~~l~~~-- 91 (316)
T PHA02544 22 ECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRIDF-VRNRLTRF-- 91 (316)
T ss_pred HhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHHH-HHHHHHHH--
Confidence 8999999999999988754 23567777999999999999999883 3221 23333333 11111 11111110
Q ss_pred CCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchhcCC
Q 016120 267 PSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-N-SEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEMENG 342 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~~ 342 (394)
.... +.+.+-++|+|++.. + ......+...+.....++++|+||.... +...+ .+.
T Consensus 92 ------------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l--~sR 151 (316)
T PHA02544 92 ------------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL--RSR 151 (316)
T ss_pred ------------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH--Hhh
Confidence 0000 113456789999986 1 2233444444444456778888886542 22222 123
Q ss_pred CceeeCCccCCCCCCCChHHHHHHHH
Q 016120 343 EKIRRDSVLFGGPLIRLKHEAWQFFI 368 (394)
Q Consensus 343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~ 368 (394)
...+. ++.. +.++...++.
T Consensus 152 ~~~i~-----~~~p--~~~~~~~il~ 170 (316)
T PHA02544 152 CRVID-----FGVP--TKEEQIEMMK 170 (316)
T ss_pred ceEEE-----eCCC--CHHHHHHHHH
Confidence 34666 7777 7777665543
No 52
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.7e-05 Score=78.53 Aligned_cols=175 Identities=10% Similarity=-0.035 Sum_probs=93.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE-eCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR-VSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~l~ 265 (394)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|..+.+...-...+...-|.. .......-..-..+.....
T Consensus 17 eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 89999988888888886542 234577899999999999998876321111010000110 0000000011111111000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHHHhhch
Q 016120 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDLLASLE 338 (394)
Q Consensus 266 ~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~ 338 (394)
.........+. ..+++.+..... ..+++-++|+|++.. +...++.+...+....+.+.+|++| +...+...+
T Consensus 96 ~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl- 174 (397)
T PRK14955 96 LNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI- 174 (397)
T ss_pred CCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH-
Confidence 00000000011 233333322222 134566889999987 5567888888887666667766554 444544433
Q ss_pred hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.....+++ +.++ +.++....+.+.+
T Consensus 175 -~sR~~~v~-----f~~l--~~~ei~~~l~~~~ 199 (397)
T PRK14955 175 -ASRCQRFN-----FKRI--PLEEIQQQLQGIC 199 (397)
T ss_pred -HHHHHHhh-----cCCC--CHHHHHHHHHHHH
Confidence 12345677 9999 8888777776654
No 53
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.16 E-value=5.4e-05 Score=73.78 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=92.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcc--cc------------------cccCeeEEEE
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDH--VK------------------FYFDCLAWVR 246 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~------------------~~F~~~~wv~ 246 (394)
+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+..... .. .+++. +++.
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 89999999999999886543 345678899999999999988865211 00 12222 2222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 016120 247 VSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRV 324 (394)
Q Consensus 247 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~I 324 (394)
.+...... +...+.+.+... ..+++-++|+|++.. +...++.+...+......+.+
T Consensus 93 ~~~~~~~~----------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 93 AASNNGVD----------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred ccccCCHH----------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 11111100 112222222111 124556889999877 455677777777555556777
Q ss_pred EEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 325 LITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 325 ivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
|++|.+.+ +...+ .+....++ +.++ +.++....+.+.+
T Consensus 151 Il~~~~~~~l~~~l--~sr~~~~~-----~~~~--~~~~l~~~l~~~~ 189 (355)
T TIGR02397 151 ILATTEPHKIPATI--LSRCQRFD-----FKRI--PLEDIVERLKKIL 189 (355)
T ss_pred EEEeCCHHHHHHHH--HhheeEEE-----cCCC--CHHHHHHHHHHHH
Confidence 77765553 33333 13345777 8999 9888888787654
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.2e-05 Score=77.83 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=96.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc------cc------------c-cccCeeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND------HV------------K-FYFDCLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~------~~------------~-~~F~~~~wv~v 247 (394)
+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.... .. . ..+.-++.++.
T Consensus 14 dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 89999988888888776543 23477899999999999998886510 00 0 01111233333
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL 325 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii 325 (394)
+.+..+.. ...+.+..... ..++.-++|+|++.. +...++.|...+-.-.+.+++|
T Consensus 93 as~~~vdd----------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 93 ASNTSVDD----------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred ccCCCHHH----------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 22222211 12222221111 134666899999987 5666788888877666677766
Q ss_pred Eec-CChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 326 ITV-TDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 326 vTT-R~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
++| ..+.+...+ .+....++ +.++ +.++....+.+.+.
T Consensus 151 latte~~Kl~~tI--~SRc~~~~-----f~~l--~~~el~~~L~~ia~ 189 (491)
T PRK14964 151 LATTEVKKIPVTI--ISRCQRFD-----LQKI--PTDKLVEHLVDIAK 189 (491)
T ss_pred EEeCChHHHHHHH--HHhheeee-----cccc--cHHHHHHHHHHHHH
Confidence 655 445555544 24567788 9999 98888888877654
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=2.2e-05 Score=81.45 Aligned_cols=164 Identities=11% Similarity=-0.016 Sum_probs=96.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH---
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS--- 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~--- 263 (394)
+++|.+..+..|.+.+..+. -...+.++|..|+||||+|+.+.+.......+. +..+..-.....|...
T Consensus 17 divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCCC
Confidence 89999999999888887643 234567899999999999999976311110000 0000001111111100
Q ss_pred ----hCCCCCCccccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHHHh
Q 016120 264 ----VMPPSRVSVIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDLLA 335 (394)
Q Consensus 264 ----l~~~~~~~~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~ 335 (394)
+.... .... +..++.+.+... ..+++-++|||++.. +...++.|...+-.-....++|++| ..+.+..
T Consensus 89 D~ieidaas----~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 89 DLIEIDAAS----RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred Cceeecccc----cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 00000 0010 222233332222 246677999999998 6777888877776555566655544 4455554
Q ss_pred hchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 336 SLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+ .+....++ +.+| +.++....+.+.+
T Consensus 165 TI--~SRC~~~~-----f~~L--s~~ei~~~L~~il 191 (647)
T PRK07994 165 TI--LSRCLQFH-----LKAL--DVEQIRQQLEHIL 191 (647)
T ss_pred HH--HhhheEee-----CCCC--CHHHHHHHHHHHH
Confidence 43 23467788 9999 9999988887764
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.7e-05 Score=79.31 Aligned_cols=150 Identities=11% Similarity=0.009 Sum_probs=93.2
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-------------------ccCeeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-------------------YFDCLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~v 247 (394)
+++|-+..+..|.+++..+. -...+.++|+.|+||||+|+.+.+..--.. .|.-.+.+..
T Consensus 17 divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 89999999999999997653 234567999999999999998876311111 1111222221
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH---H-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD---Y-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGS 322 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs 322 (394)
+.+. ..++..+.+.. . ..++.-++|+|++.. +....+.+...+-.-...+
T Consensus 96 as~~-------------------------~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 96 ASRT-------------------------KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred cccC-------------------------CHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 1111 22333222221 1 135667899999998 6677788887776666677
Q ss_pred EEEEecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 323 RVLITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 323 ~IivTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
++|++|.+ ..+...+ .+....++ +.++ +.++....+.+.+
T Consensus 151 ~fIlattd~~kl~~tI--~SRc~~~~-----f~~l--~~~~i~~~l~~il 191 (509)
T PRK14958 151 KFILATTDHHKLPVTV--LSRCLQFH-----LAQL--PPLQIAAHCQHLL 191 (509)
T ss_pred EEEEEECChHhchHHH--HHHhhhhh-----cCCC--CHHHHHHHHHHHH
Confidence 76665544 3444333 23446677 8999 8887766665554
No 57
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.12 E-value=6.7e-05 Score=70.89 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=72.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT 290 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 290 (394)
-+.++|++|+|||++|+.+..-..-........|+.++. . +++..+.+. +.......+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~---------~~~~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGH---------TAPKTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhccc---------chHHHHHHHHHc--
Confidence 577999999999999977765211111111123444442 1 122222111 112222222222
Q ss_pred CCeEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchh-----cCCCceeeCCccCCCC
Q 016120 291 NKKYFIVLDDVFD----------NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEM-----ENGEKIRRDSVLFGGP 355 (394)
Q Consensus 291 ~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~-----~~~~~~~~~~~~~l~~ 355 (394)
..-+|+||++.. ..+.++.+...+.....+.+||.++........... ......++ +++
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~-----fp~ 194 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVD-----FPD 194 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEE-----eCC
Confidence 336899999963 022345555555554455667776654332222100 01135678 999
Q ss_pred CCCChHHHHHHHHHHhC
Q 016120 356 LIRLKHEAWQFFILHYG 372 (394)
Q Consensus 356 L~~~~~~~~~Lf~~~~~ 372 (394)
+ +.+|-..++.+.+.
T Consensus 195 l--~~edl~~I~~~~l~ 209 (284)
T TIGR02880 195 Y--SEAELLVIAGLMLK 209 (284)
T ss_pred c--CHHHHHHHHHHHHH
Confidence 9 99999999988753
No 58
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.12 E-value=7.8e-06 Score=80.68 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=71.5
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
++++.+...+.+...|... +.+.++|++|+|||++|+.+++......+|+.+.||+++..++.......+ .+
T Consensus 176 d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP 247 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RP 247 (459)
T ss_pred cccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CC
Confidence 7788899999999999764 467789999999999999999854444567888899999988766543322 11
Q ss_pred CCCCccccCcCHHHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120 267 PSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD 303 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~ 303 (394)
... .+.....-..+.+.... .+++++||+|++..
T Consensus 248 ~~v---gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 248 NGV---GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCC---CeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 100 01111111222223322 24789999999987
No 59
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=2.8e-05 Score=80.57 Aligned_cols=151 Identities=12% Similarity=0.081 Sum_probs=90.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-------------------cCeeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-------------------FDCLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~v 247 (394)
+++|.+..+..|.+++..+. -...+.++|+.|+||||+|+.+.+....... |.-.+.+..
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 89999999999999987643 2456789999999999999988763111100 000111111
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGS 322 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs 322 (394)
+.+. ..+.+.+.+... ..+++-++|+|++.. +....+.|...+-.-...+
T Consensus 96 As~~-------------------------gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v 150 (709)
T PRK08691 96 ASNT-------------------------GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (709)
T ss_pred cccC-------------------------CHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCc
Confidence 1111 222222222211 235667899999987 4555666776665444556
Q ss_pred EEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 323 RVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 323 ~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
++|++|.+. .+...+ .+....++ +.++ +.++....+.+.+.
T Consensus 151 ~fILaTtd~~kL~~TI--rSRC~~f~-----f~~L--s~eeI~~~L~~Il~ 192 (709)
T PRK08691 151 KFILATTDPHKVPVTV--LSRCLQFV-----LRNM--TAQQVADHLAHVLD 192 (709)
T ss_pred EEEEEeCCccccchHH--HHHHhhhh-----cCCC--CHHHHHHHHHHHHH
Confidence 677666543 333222 12334556 8899 99888887777643
No 60
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.10 E-value=5.7e-05 Score=72.05 Aligned_cols=112 Identities=18% Similarity=0.266 Sum_probs=80.8
Q ss_pred ccceecccHHHHHHHHhcCCCCc-eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGL-AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 265 (394)
++.+|+..+..+...+...+... ..+-|.|.+|.|||.+.+.+.+.... ..+|+++-+.++...++..|+.+..
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhc
Confidence 78899999999998887766543 45589999999999999999985422 3489999999999999999999996
Q ss_pred CCCCCc--cccCc-CHHHHHHHHHHH--cc--CCeEEEEEeCCCC
Q 016120 266 PPSRVS--VIIGE-DYQLKKSILRDY--LT--NKKYFIVLDDVFD 303 (394)
Q Consensus 266 ~~~~~~--~~~~~-~~~~~~~~l~~~--l~--~kr~LlVlDdv~~ 303 (394)
....++ ...+. +..+....+.++ .+ ++.++|||||++.
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 322211 00111 233334444442 22 4689999999987
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=2.7e-05 Score=79.74 Aligned_cols=168 Identities=10% Similarity=-0.001 Sum_probs=92.5
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+..... |.-|.... .+..-.....+......
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~~~~h~ 88 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESINTNQSV 88 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHHcCCCC
Confidence 89999999999998886643 345677999999999999999876211 11121100 01111111111111000
Q ss_pred CCCCccccCc-CHH---HHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHHHhhchh
Q 016120 267 PSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDLLASLEM 339 (394)
Q Consensus 267 ~~~~~~~~~~-~~~---~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~ 339 (394)
.-......+. ..+ .+...+... ..+++-++|+|++.. +...++.|...+-....++.+|++| ....+....
T Consensus 89 DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI-- 166 (605)
T PRK05896 89 DIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI-- 166 (605)
T ss_pred ceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH--
Confidence 0000000001 222 222222211 123444699999987 5667788877776555556665544 444554333
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....++ +.++ +.++....+.+.+
T Consensus 167 ~SRcq~ie-----F~~L--s~~eL~~~L~~il 191 (605)
T PRK05896 167 ISRCQRYN-----FKKL--NNSELQELLKSIA 191 (605)
T ss_pred Hhhhhhcc-----cCCC--CHHHHHHHHHHHH
Confidence 13455777 9999 9988887777754
No 62
>CHL00181 cbbX CbbX; Provisional
Probab=98.10 E-value=0.00011 Score=69.46 Aligned_cols=159 Identities=10% Similarity=0.034 Sum_probs=83.5
Q ss_pred ccceecccHHHHHHHH---hcC----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCH
Q 016120 187 DINEFERGREELFDLL---IEG----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDF 253 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L---~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (394)
+++|.+..+++|.++. ... ......+.++|++|+||||+|+.+++.......-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 5778766666554432 211 11223477899999999999999976211011111112454441
Q ss_pred HHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcE
Q 016120 254 GKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------NSEIWSDLEELLPDDENGSR 323 (394)
Q Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~ 323 (394)
.. +.....+. +.......+.+. ..-+|+||++.. ..+..+.|...+.....+.+
T Consensus 100 ~~----l~~~~~g~---------~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 100 DD----LVGQYIGH---------TAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred HH----HHHHHhcc---------chHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 11 22222111 111122222222 234899999964 02233444555544445567
Q ss_pred EEEecCChHHHhhchh-----cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 324 VLITVTDPDLLASLEM-----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 324 IivTTR~~~v~~~~~~-----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
||+++....+...... +.....+. ++++ +.++..+++.+.+.
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~-----F~~~--t~~el~~I~~~~l~ 210 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVD-----FPDY--TPEELLQIAKIMLE 210 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEE-----cCCc--CHHHHHHHHHHHHH
Confidence 7777764443221100 11245778 9999 99999999888753
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=3.2e-05 Score=79.17 Aligned_cols=150 Identities=10% Similarity=0.033 Sum_probs=91.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-------------------ccCeeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-------------------YFDCLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~v 247 (394)
+++|.+..+..+.+++..+. -...+.++|+.|+||||+|+.+........ .|.-.+++..
T Consensus 17 divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 89999999999998887643 234567899999999999999875311100 0111122211
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGS 322 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs 322 (394)
+.+. ..+++.+.+... ..+++-++|+|++.. +....+.+...+-.....+
T Consensus 96 ~~~~-------------------------~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 96 ASNT-------------------------QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred cccC-------------------------CHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 1111 222222222211 135677999999988 5566777777776655566
Q ss_pred EEEEecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 323 RVLITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 323 ~IivTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+|++|.+ +.+...+ .+....++ +.++ +.++....+.+.+
T Consensus 151 ~fIL~t~d~~kil~tI--~SRc~~~~-----f~~l--~~~~i~~~L~~il 191 (527)
T PRK14969 151 KFILATTDPQKIPVTV--LSRCLQFN-----LKQM--PPPLIVSHLQHIL 191 (527)
T ss_pred EEEEEeCChhhCchhH--HHHHHHHh-----cCCC--CHHHHHHHHHHHH
Confidence 66665544 3333222 12345677 9999 9888887777664
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=3.7e-05 Score=76.81 Aligned_cols=168 Identities=10% Similarity=-0.052 Sum_probs=95.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+...... .... .....+.. -..+......
T Consensus 19 dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~~---~pCg~C~s---C~~i~~g~~~ 90 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIGN---EPCNECTS---CLEITKGISS 90 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCccc-ccCc---cccCCCcH---HHHHHccCCc
Confidence 89999999999888887653 234578999999999999999987311110 0000 00000000 1111111100
Q ss_pred CCCCc---cccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhchh
Q 016120 267 PSRVS---VIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLEM 339 (394)
Q Consensus 267 ~~~~~---~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~ 339 (394)
.-... ..... +..++.+.+... ..++.-++|+|++.. +...++.|...+-........|+ ||....+...+
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI-- 168 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI-- 168 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH--
Confidence 00000 00001 222333333322 235667999999998 67778888777754444555444 55545554444
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....|+ +.++ +.++....+.+..
T Consensus 169 ~SRCq~~~-----f~~l--s~~~i~~~L~~i~ 193 (484)
T PRK14956 169 LSRCQDFI-----FKKV--PLSVLQDYSEKLC 193 (484)
T ss_pred Hhhhheee-----ecCC--CHHHHHHHHHHHH
Confidence 24456788 9999 9988888887764
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=5.3e-05 Score=81.01 Aligned_cols=167 Identities=8% Similarity=-0.056 Sum_probs=95.5
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.....+.... ..+..-.....|... +.
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g-~~ 86 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPG-GP 86 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcC-CC
Confidence 89999999999999887653 2345789999999999999998763211110000 000000000000000 00
Q ss_pred CCCCc---cccCc-CHHHHHH---HHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC-ChHHHhh
Q 016120 267 PSRVS---VIIGE-DYQLKKS---ILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVT-DPDLLAS 336 (394)
Q Consensus 267 ~~~~~---~~~~~-~~~~~~~---~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~ 336 (394)
...+- ...+. ..+++.+ .+... ..++.-++|||++.. +...++.|...+-.-...+.+|++|. ...+...
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00000 00000 2222222 22111 235566889999998 67788888888876666666665554 4455554
Q ss_pred chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+ .+....|+ +.++ +.++....+.+.+
T Consensus 167 I--rSRc~~v~-----F~~l--~~~~l~~~L~~il 192 (824)
T PRK07764 167 I--RSRTHHYP-----FRLV--PPEVMRGYLERIC 192 (824)
T ss_pred H--HhheeEEE-----eeCC--CHHHHHHHHHHHH
Confidence 4 24567888 9999 9888877777654
No 66
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7.6e-05 Score=76.91 Aligned_cols=168 Identities=10% Similarity=-0.045 Sum_probs=94.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-....+ + ..++.-..-..|...-+.
T Consensus 14 eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPNGPG 85 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhcccCC
Confidence 89999999999999887642 344567999999999999998876311101000 0 000000001111100000
Q ss_pred CCCC----c-cccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhc
Q 016120 267 PSRV----S-VIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASL 337 (394)
Q Consensus 267 ~~~~----~-~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~ 337 (394)
.... . ..... +..++.+.+... ..+++-++|+|++.. +....+.|...+-.-...+.+|+ ||..+.+...+
T Consensus 86 ~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 86 SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 0000 0 00000 222233232221 134566899999987 66777888888776555666555 55555555544
Q ss_pred hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....++ +.++ +.++..+.+.+.+
T Consensus 166 --~SRc~~~~-----F~~l--~~~~i~~~L~~i~ 190 (584)
T PRK14952 166 --RSRTHHYP-----FRLL--PPRTMRALIARIC 190 (584)
T ss_pred --HHhceEEE-----eeCC--CHHHHHHHHHHHH
Confidence 23467788 9999 9888877776653
No 67
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.9e-05 Score=77.32 Aligned_cols=175 Identities=9% Similarity=-0.025 Sum_probs=93.5
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE-eCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR-VSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~l~ 265 (394)
+++|.+..+..|.+.+..+. -...+.++|+.|+||||+|+.+.+.......++...|-. +...+..-...+.+...-.
T Consensus 17 eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~ 95 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTS 95 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCC
Confidence 89999998898888886542 334578999999999999988875311111110000110 0000000011111110000
Q ss_pred CCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhch
Q 016120 266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLE 338 (394)
Q Consensus 266 ~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~ 338 (394)
..-........ ..+++...+... ..+++-++|+|++.. +....+.|...+-.-...+.+|+ |++...+...+
T Consensus 96 ~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI- 174 (620)
T PRK14954 96 LNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI- 174 (620)
T ss_pred CCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH-
Confidence 00000000011 233333322222 234556789999988 55667888888766555666555 44444554443
Q ss_pred hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.....+++ +.++ +.++....+.+.+
T Consensus 175 -~SRc~~ve-----f~~l--~~~ei~~~L~~i~ 199 (620)
T PRK14954 175 -ASRCQRFN-----FKRI--PLDEIQSQLQMIC 199 (620)
T ss_pred -HhhceEEe-----cCCC--CHHHHHHHHHHHH
Confidence 24567788 9999 9888777776653
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=5.9e-05 Score=78.08 Aligned_cols=172 Identities=9% Similarity=-0.049 Sum_probs=95.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCe--eEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC--LAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.......... ..+- .+..-..-+.|....
T Consensus 25 dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIMEGR 99 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhcCC
Confidence 89999999999999887653 3446778999999999999999763211110000 0000 000000011111110
Q ss_pred CCCCCCccccCc-CHHHHHH---HHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhc
Q 016120 265 MPPSRVSVIIGE-DYQLKKS---ILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASL 337 (394)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~---~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~ 337 (394)
...-......+. ..+++.+ .+... ..+++-++|+|++.. +....+.|...+-.-..++++|+ ||....+...+
T Consensus 100 h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI 179 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTV 179 (598)
T ss_pred CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHH
Confidence 000000000001 2333322 22211 134556799999987 55667778877766556677665 44444554444
Q ss_pred hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.+....++ +.++ +.++....+.+.+.
T Consensus 180 --~SRcq~~~-----f~~l--~~~el~~~L~~i~~ 205 (598)
T PRK09111 180 --LSRCQRFD-----LRRI--EADVLAAHLSRIAA 205 (598)
T ss_pred --HhheeEEE-----ecCC--CHHHHHHHHHHHHH
Confidence 23456788 9999 99888888877643
No 69
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.04 E-value=7.3e-05 Score=68.16 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=72.8
Q ss_pred ccc-eecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120 187 DIN-EFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~-Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 265 (394)
+|+ |.+.........+.........+.|+|..|+|||+||+.+++... .... ...+++.....
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~-------------- 82 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL-------------- 82 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH--------------
Confidence 555 444333333333322223345778999999999999999988321 1111 23344322110
Q ss_pred CCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC-CCCc-EEEEecCChHHHhhch----
Q 016120 266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD-ENGS-RVLITVTDPDLLASLE---- 338 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs-~IivTTR~~~v~~~~~---- 338 (394)
..+ ... ...-+||+||+.. +...-..+...+... ..|. .||+|++.........
T Consensus 83 -----------------~~~-~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 83 -----------------LAF-DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred -----------------HHH-hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 000 111 1234789999976 222223343333221 2333 4666766543222110
Q ss_pred -hcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 339 -MENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 339 -~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
.-.....++ ++|+ ++++-..++.+.
T Consensus 144 sr~~~~~~i~-----l~pl--~~~~~~~~l~~~ 169 (227)
T PRK08903 144 TRLGWGLVYE-----LKPL--SDADKIAALKAA 169 (227)
T ss_pred HHHhcCeEEE-----ecCC--CHHHHHHHHHHH
Confidence 002246778 9999 988766776664
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=8.5e-05 Score=72.87 Aligned_cols=150 Identities=9% Similarity=0.040 Sum_probs=88.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc------ccccCeeE-EEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV------KFYFDCLA-WVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~~i~~~ 259 (394)
+++|.+...+.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+.... ...|...+ -+......
T Consensus 18 ~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~-------- 88 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNN-------- 88 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC--------
Confidence 88999999999999887642 3457889999999999999998763111 01121111 11100000
Q ss_pred HHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHH
Q 016120 260 IIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDL 333 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v 333 (394)
..++....+.+. ..+++-++++|++.. +...++.+...+......+.+|++| ....+
T Consensus 89 -----------------~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 89 -----------------SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred -----------------CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 122222222111 124556899999977 4556777776665444455555554 33333
Q ss_pred HhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 334 LASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
...+ .+...+++ +.++ +.++....+.+.+
T Consensus 152 ~~~l--~sr~~~v~-----~~~~--~~~~l~~~l~~~~ 180 (367)
T PRK14970 152 IPTI--LSRCQIFD-----FKRI--TIKDIKEHLAGIA 180 (367)
T ss_pred CHHH--HhcceeEe-----cCCc--cHHHHHHHHHHHH
Confidence 3332 13345778 9999 9888888777653
No 71
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=1.3e-05 Score=78.25 Aligned_cols=169 Identities=12% Similarity=0.050 Sum_probs=98.6
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc--cC--------------e--eEEEEeC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FD--------------C--LAWVRVS 248 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~--------------~--~~wv~vs 248 (394)
+++|.+.....+.+.+..+. -...+.++|+.|+||+|+|..+....--... .. | +-|+..+
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 89999999999998887652 3446789999999999999777542100000 00 0 0011111
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCC
Q 016120 249 IAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENG 321 (394)
Q Consensus 249 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~g 321 (394)
..+|...+.... ..... ..-.. ..++..+ +.+.+ .+.+-++|+|++.. +....+.|...+..-..+
T Consensus 99 ~HPDl~~i~~~~----~~~~~--~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 99 AHGGLLTLERSW----NEKGK--RLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred CCCCeEEEeccc----ccccc--cccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 111111000000 00000 00011 3344332 23332 24567899999998 777778888777665566
Q ss_pred cEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 322 SRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 322 s~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
+.+|++|.++ .+.... .+....++ +.++ +.++..+++.+..+
T Consensus 172 ~~~IL~t~~~~~llpti--~SRc~~i~-----l~~l--~~~~i~~~L~~~~~ 214 (365)
T PRK07471 172 SLFLLVSHAPARLLPTI--RSRCRKLR-----LRPL--APEDVIDALAAAGP 214 (365)
T ss_pred eEEEEEECCchhchHHh--hccceEEE-----CCCC--CHHHHHHHHHHhcc
Confidence 7777777765 443333 34567788 9999 99999999987643
No 72
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.02 E-value=3.2e-05 Score=70.19 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=85.9
Q ss_pred cee-cccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhcCcccccccC--eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 189 NEF-ERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD--CLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 189 ~Gr-~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+|- .+..-...+.+... +.....+-|+|..|+|||.|.+.+++ +...... .+++++ ..+....+...+
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~~ 83 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADAL 83 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHHH
Confidence 453 33334444555443 33345678999999999999999998 4443222 345554 345555555554
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHH-HhhCCC-CCCCcEEEEecCCh---------
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDL-EELLPD-DENGSRVLITVTDP--------- 331 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l-~~~l~~-~~~gs~IivTTR~~--------- 331 (394)
... ... .+.+.+. .-=+|++||++. ....|... ...+.. ...|.+||+|+...
T Consensus 84 ~~~---------~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 84 RDG---------EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HTT---------SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred Hcc---------cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 332 222 2333333 234789999987 33334332 222211 13467899999543
Q ss_pred HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 332 DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 332 ~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
++...+ ...-+++ ++++ +.++...++.+.+.
T Consensus 150 ~L~SRl---~~Gl~~~-----l~~p--d~~~r~~il~~~a~ 180 (219)
T PF00308_consen 150 DLRSRL---SWGLVVE-----LQPP--DDEDRRRILQKKAK 180 (219)
T ss_dssp HHHHHH---HCSEEEE-----E------HHHHHHHHHHHHH
T ss_pred hhhhhH---hhcchhh-----cCCC--CHHHHHHHHHHHHH
Confidence 233333 4567888 9999 99999999998854
No 73
>PRK05642 DNA replication initiation factor; Validated
Probab=98.01 E-value=7.3e-05 Score=68.59 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=71.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
...+.|+|..|+|||.|++.+++ +....-..++|++... +... . ..+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~------------------~----~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR------------------G----PELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh------------------h----HHHHHh
Confidence 35678999999999999999987 3332223456665421 1110 0 112222
Q ss_pred ccCCeEEEEEeCCCC--CchhHHH-HHhhCCC-CCCCcEEEEecCChH---------HHhhchhcCCCceeeCCccCCCC
Q 016120 289 LTNKKYFIVLDDVFD--NSEIWSD-LEELLPD-DENGSRVLITVTDPD---------LLASLEMENGEKIRRDSVLFGGP 355 (394)
Q Consensus 289 l~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~~~~~~~~~l~~ 355 (394)
+.+-. +||+||+.. ....|.. +...+.. ..+|..||+|++.+. +...+ ....+++ +++
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl---~~gl~~~-----l~~ 165 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL---TLALVFQ-----MRG 165 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHH---hcCeeee-----cCC
Confidence 22222 688999975 2345543 3333321 234667888887532 11111 2346788 999
Q ss_pred CCCChHHHHHHHHHHh
Q 016120 356 LIRLKHEAWQFFILHY 371 (394)
Q Consensus 356 L~~~~~~~~~Lf~~~~ 371 (394)
+ +.++-...+++++
T Consensus 166 ~--~~e~~~~il~~ka 179 (234)
T PRK05642 166 L--SDEDKLRALQLRA 179 (234)
T ss_pred C--CHHHHHHHHHHHH
Confidence 9 9999999998653
No 74
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.99 E-value=2.7e-05 Score=64.13 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=40.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccC
Q 016120 212 VAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN 291 (394)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 291 (394)
|.|+|++|+|||++|+.+++. ...+ .+.++.+.-.+ .. .......+...+.+.-..
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~-------------~~------~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELIS-------------SY------AGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHT-------------SS------TTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---ccccccccccc-------------cc------cccccccccccccccccc
Confidence 568999999999999999984 3322 23343222110 00 011334444444443333
Q ss_pred C-eEEEEEeCCCC
Q 016120 292 K-KYFIVLDDVFD 303 (394)
Q Consensus 292 k-r~LlVlDdv~~ 303 (394)
. +.+|++||+..
T Consensus 57 ~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 57 AKPCVLFIDEIDK 69 (132)
T ss_dssp STSEEEEEETGGG
T ss_pred ccceeeeeccchh
Confidence 3 89999999987
No 75
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00013 Score=70.91 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=96.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc--ccCeeEEEEeCCCCCHHHHHHHHHHH-
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF--YFDCLAWVRVSIAYDFGKMLDDIIKS- 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~i~~~i~~~- 263 (394)
.++|-+.....+...+..+. ....+.|+|+.|+||||+|..+....--.. .+.... ...........+.+...
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQGA 99 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcCC
Confidence 89999999999999887653 345688999999999999988876311100 011100 00011111122222211
Q ss_pred ------hCCCCCCcc-c-cCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec
Q 016120 264 ------VMPPSRVSV-I-IGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV 328 (394)
Q Consensus 264 ------l~~~~~~~~-~-~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT 328 (394)
+..+..... . -.. ..+++. .+.+++ .+++-++|+|++.. +....+.|...+-....++.+|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 100000000 0 011 344433 333333 34667899999998 6767777777765544455555544
Q ss_pred CC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 329 TD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 329 R~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
.+ ..+.... .+....++ +.|+ +.++...++.+.
T Consensus 179 ~~~~~llptI--rSRc~~i~-----l~pl--~~~~~~~~L~~~ 212 (351)
T PRK09112 179 HSSGRLLPTI--RSRCQPIS-----LKPL--DDDELKKALSHL 212 (351)
T ss_pred CChhhccHHH--HhhccEEE-----ecCC--CHHHHHHHHHHh
Confidence 44 3444444 24456888 9999 999999988874
No 76
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=6.2e-05 Score=75.64 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=79.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccccccc--CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYF--DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
..-+.|+|..|+|||+|++.+.+ .+.... ..+++++ ...+...+...+.... .....+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-----------~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH-----------KEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-----------hHHHHHH
Confidence 34578999999999999999988 333222 2233443 3456666666553210 1122333
Q ss_pred HHccCCeEEEEEeCCCC-C-chhH-HHHHhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCceeeCCccCC
Q 016120 287 DYLTNKKYFIVLDDVFD-N-SEIW-SDLEELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKIRRDSVLFG 353 (394)
Q Consensus 287 ~~l~~kr~LlVlDdv~~-~-~~~~-~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l 353 (394)
+.+. ..-+|||||+.. . ...+ +.+...+.. ...|..||+|+..+ .+...+ ...-+.. +
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~---~~Gl~~~-----L 272 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRF---NMGLSIA-----I 272 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHH---hCCceec-----c
Confidence 3333 234889999976 1 2222 333333321 13455688886643 222222 3456777 9
Q ss_pred CCCCCChHHHHHHHHHHhC
Q 016120 354 GPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 354 ~~L~~~~~~~~~Lf~~~~~ 372 (394)
+++ +.++-..++.+++.
T Consensus 273 ~~p--d~e~r~~iL~~~~~ 289 (450)
T PRK14087 273 QKL--DNKTATAIIKKEIK 289 (450)
T ss_pred CCc--CHHHHHHHHHHHHH
Confidence 999 99999999998854
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.93 E-value=0.00015 Score=67.74 Aligned_cols=158 Identities=9% Similarity=0.018 Sum_probs=80.2
Q ss_pred ccceecccHHHHHH---HHhc----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCH
Q 016120 187 DINEFERGREELFD---LLIE----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDF 253 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~---~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (394)
.++|.+..+++|.+ ++.. ..+....+.++|++|+||||+|+.+++...-...-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 56787766665543 3311 0234556789999999999999999762100010011123333221
Q ss_pred HHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C--------chhHHHHHhhCCCCCCCcEE
Q 016120 254 GKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N--------SEIWSDLEELLPDDENGSRV 324 (394)
Q Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~--------~~~~~~l~~~l~~~~~gs~I 324 (394)
.+ ....- ........+.+... ...+|++|++.. . .+..+.+...+........+
T Consensus 84 -~l----~~~~~---------g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 84 -DL----VGEYI---------GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred -Hh----hhhhc---------cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 11 11100 11122222222222 234889999975 1 12334454444443333455
Q ss_pred EEecCChHHHh------hchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 325 LITVTDPDLLA------SLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 325 ivTTR~~~v~~------~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
|+++....... .+. ......++ ++++ +.++-.+++.+.+.
T Consensus 147 ila~~~~~~~~~~~~~p~L~-sRf~~~i~-----f~~~--~~~el~~Il~~~~~ 192 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLR-SRFPISID-----FPDY--TVEELMEIAERMVK 192 (261)
T ss_pred EecCCcchhHHHHhcChHHH-hccceEEE-----ECCC--CHHHHHHHHHHHHH
Confidence 55654433211 110 11134567 9999 99999999988754
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00015 Score=74.68 Aligned_cols=168 Identities=8% Similarity=-0.031 Sum_probs=91.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+.......... ..++.-...+.|......
T Consensus 17 dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCCC
Confidence 8899888888888777654 23467778999999999999998863211100000 000000111111110000
Q ss_pred CCCCccccCc-CHH---HHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchh
Q 016120 267 PSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEM 339 (394)
Q Consensus 267 ~~~~~~~~~~-~~~---~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~ 339 (394)
.......... ..+ .+.+.+... ..+++-++|+|++.. +...++.|...+-.-.....+|++|.+ ..+...+
T Consensus 89 Dv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI-- 166 (624)
T PRK14959 89 DVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI-- 166 (624)
T ss_pred ceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH--
Confidence 0000000000 122 222222211 235667899999988 566677787777544445556665544 4554443
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....++ +.++ +.++....+.+.+
T Consensus 167 ~SRcq~i~-----F~pL--s~~eL~~~L~~il 191 (624)
T PRK14959 167 VSRCQHFT-----FTRL--SEAGLEAHLTKVL 191 (624)
T ss_pred Hhhhhccc-----cCCC--CHHHHHHHHHHHH
Confidence 13345777 9999 9998887777653
No 79
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00029 Score=71.37 Aligned_cols=153 Identities=9% Similarity=-0.013 Sum_probs=90.5
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc--cc-----------------ccCeeEEEEe
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV--KF-----------------YFDCLAWVRV 247 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~-----------------~F~~~~wv~v 247 (394)
+++|.+.....+.+++..+. -.....++|+.|+||||+|+.+.....- .. .|...+++..
T Consensus 17 diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 89999999999999887643 3445678999999999999988652110 00 0111111211
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120 248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL 325 (394)
Q Consensus 248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii 325 (394)
+.+.... +...+.+.+... ..+++-++|+|++.. +....+.+...+....+...+|
T Consensus 96 as~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 96 ASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred ccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1110000 122222222221 135677999999987 4556677777776555555555
Q ss_pred Eec-CChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 326 ITV-TDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 326 vTT-R~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
++| +...+.... .+....++ +.++ +.++....+.+.+
T Consensus 154 l~tt~~~kl~~tI--~SRc~~i~-----f~~l--s~~el~~~L~~i~ 191 (486)
T PRK14953 154 LCTTEYDKIPPTI--LSRCQRFI-----FSKP--TKEQIKEYLKRIC 191 (486)
T ss_pred EEECCHHHHHHHH--HHhceEEE-----cCCC--CHHHHHHHHHHHH
Confidence 544 444444333 13345778 9999 9888877777653
No 80
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.90 E-value=0.00016 Score=75.52 Aligned_cols=165 Identities=20% Similarity=0.188 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-CCCHHHHHHHHHHHhCCCCCCc---
Q 016120 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVMPPSRVS--- 271 (394)
Q Consensus 196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~--- 271 (394)
.++.+.|... .+.+.+.|..++|.|||||+-.... .. ..=..+.|.+..+ +-++...+..++..++...+..
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 3455556544 3688999999999999999988864 11 1234578998876 4468888888888887543321
Q ss_pred -----cccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcC
Q 016120 272 -----VIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMEN 341 (394)
Q Consensus 272 -----~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~ 341 (394)
+.... +...+...+..-+. .+++.+||||..- ++..-..+...+...+.+-..++|||+..-....
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la---- 176 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA---- 176 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc----
Confidence 01111 34445555555443 3689999999765 3544455666666667788999999986322222
Q ss_pred CCceeeCCccCCC----CCCCChHHHHHHHHHHh
Q 016120 342 GEKIRRDSVLFGG----PLIRLKHEAWQFFILHY 371 (394)
Q Consensus 342 ~~~~~~~~~~~l~----~L~~~~~~~~~Lf~~~~ 371 (394)
.-.+++..|+++ .+ +.+|+-.+|...-
T Consensus 177 -~lRlr~~llEi~~~~Lrf--~~eE~~~fl~~~~ 207 (894)
T COG2909 177 -RLRLRDELLEIGSEELRF--DTEEAAAFLNDRG 207 (894)
T ss_pred -ceeehhhHHhcChHhhcC--ChHHHHHHHHHcC
Confidence 111222222232 35 7899999887753
No 81
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.0002 Score=74.55 Aligned_cols=149 Identities=8% Similarity=0.027 Sum_probs=95.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcc---------------------cccccCeeEEE
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDH---------------------VKFYFDCLAWV 245 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~wv 245 (394)
+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+..... ...+|+. ..+
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 89999999999999987642 345678999999999999988765211 0112322 112
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCC
Q 016120 246 RVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDEN 320 (394)
Q Consensus 246 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~ 320 (394)
..+... ..+++...+.+. ..+++=++|+|++.. +...++.|...+..-..
T Consensus 96 d~~~~~-------------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 96 DAASNN-------------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred cccccC-------------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 111111 222222222211 124556889999988 66778888888876656
Q ss_pred CcEEEE-ecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 321 GSRVLI-TVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 321 gs~Iiv-TTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
++.+|+ ||....+...+ .+...+++ +.++ +.++....+.+.+
T Consensus 151 ~tifIL~tt~~~kIl~tI--~SRc~iv~-----f~~l--s~~ei~~~L~~ia 193 (614)
T PRK14971 151 YAIFILATTEKHKILPTI--LSRCQIFD-----FNRI--QVADIVNHLQYVA 193 (614)
T ss_pred CeEEEEEeCCchhchHHH--Hhhhheee-----cCCC--CHHHHHHHHHHHH
Confidence 666555 54555555544 24567788 9999 9988888777654
No 82
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.90 E-value=9.7e-05 Score=60.66 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=47.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 289 (394)
..+.|+|++|+||||+++.+++. ........+++..+........... ........ ...........+.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-----ASGSGELRLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccC-----CCCCHHHHHHHHHHHH
Confidence 57889999999999999999883 3333233455544443322111111 00111110 1113333334444444
Q ss_pred cCC-eEEEEEeCCCC
Q 016120 290 TNK-KYFIVLDDVFD 303 (394)
Q Consensus 290 ~~k-r~LlVlDdv~~ 303 (394)
... ..++++|++..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 443 49999999998
No 83
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.89 E-value=0.00015 Score=72.17 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccccccc--CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYF--DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
...+.|+|..|+|||+|++.+++ +..... ..+++++. ..+...+...+... ......
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~~---- 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN---------KMEEFK---- 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC---------CHHHHH----
Confidence 34678999999999999999998 443332 23455542 34444555544321 222222
Q ss_pred HHccCCeEEEEEeCCCC--CchhH-HHHHhhCCCC-CCCcEEEEecCC-hHHHhhc----hh-cCCCceeeCCccCCCCC
Q 016120 287 DYLTNKKYFIVLDDVFD--NSEIW-SDLEELLPDD-ENGSRVLITVTD-PDLLASL----EM-ENGEKIRRDSVLFGGPL 356 (394)
Q Consensus 287 ~~l~~kr~LlVlDdv~~--~~~~~-~~l~~~l~~~-~~gs~IivTTR~-~~v~~~~----~~-~~~~~~~~~~~~~l~~L 356 (394)
+.+++ .-+|||||+.. ....+ +.+...+... .+|..+|+||.. +.-...+ .+ -....++. +++.
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~-----i~~p 268 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVD-----IEPP 268 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEE-----eCCC
Confidence 22222 23899999986 12122 2233222211 234567777764 2221111 00 02234677 9999
Q ss_pred CCChHHHHHHHHHHhCC
Q 016120 357 IRLKHEAWQFFILHYGS 373 (394)
Q Consensus 357 ~~~~~~~~~Lf~~~~~~ 373 (394)
+.++-..++.+.+..
T Consensus 269 --d~~~r~~il~~~~~~ 283 (405)
T TIGR00362 269 --DLETRLAILQKKAEE 283 (405)
T ss_pred --CHHHHHHHHHHHHHH
Confidence 999999999888643
No 84
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.88 E-value=0.0003 Score=69.67 Aligned_cols=118 Identities=19% Similarity=0.119 Sum_probs=77.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT 290 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 290 (394)
++.|.|+.++||||+++.+... ..+. .++++..+...... ...+....+.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~---------------------~l~d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRI---------------------ELLDLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchh---------------------hHHHHHHHHHHhhc
Confidence 9999999999999999777662 2222 45554322111000 11111111222212
Q ss_pred CCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChH-----HHhhchhcCCCceeeCCccCCCCCCCChHHHHH
Q 016120 291 NKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPD-----LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQ 365 (394)
Q Consensus 291 ~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-----v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~ 365 (394)
.++.+++||.|.. ...|......+.+..+. +|++|+-+.. .++.. .+....++ +-|| +-.|...
T Consensus 93 ~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L--~GR~~~~~-----l~Pl--SF~Efl~ 161 (398)
T COG1373 93 REKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESL--AGRGKDLE-----LYPL--SFREFLK 161 (398)
T ss_pred cCCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhc--CCCceeEE-----ECCC--CHHHHHh
Confidence 2778999999999 88899888888877766 8999888753 44444 34566777 9999 9988865
No 85
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.87 E-value=6.6e-05 Score=67.34 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=76.5
Q ss_pred ccceecccHHHHHHHHh---cCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLI---EGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+|+|.+..++++.-.+. ..+.....+.+||++|+||||||..+.+ +...+|. +++.+ ...
T Consensus 25 efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~----------- 87 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIE----------- 87 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C-------------
T ss_pred HccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhh-----------
Confidence 99999998888655443 2334577888999999999999999999 5555552 22221 111
Q ss_pred hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC--------C-----------CCcE
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD--------E-----------NGSR 323 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~--------~-----------~gs~ 323 (394)
...++...+.. ++ ++-+|.+|.+.. +...-+.|..+.-++ + +-+-
T Consensus 88 -------------k~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 -------------KAGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred -------------hHHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 11222222222 22 344677798887 554444444332211 1 1234
Q ss_pred EEEecCChHHHhhchhcCC-CceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 324 VLITVTDPDLLASLEMENG-EKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 324 IivTTR~~~v~~~~~~~~~-~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
|=-|||.-.+...+ ... .-+.+ |+.. +.+|-.++..+.++
T Consensus 153 igATTr~g~ls~pL--rdRFgi~~~-----l~~Y--~~~el~~Iv~r~a~ 193 (233)
T PF05496_consen 153 IGATTRAGLLSSPL--RDRFGIVLR-----LEFY--SEEELAKIVKRSAR 193 (233)
T ss_dssp EEEESSGCCTSHCC--CTTSSEEEE-----------THHHHHHHHHHCCH
T ss_pred eeeeccccccchhH--Hhhcceecc-----hhcC--CHHHHHHHHHHHHH
Confidence 45588876555544 222 33457 8888 99998888887643
No 86
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.87 E-value=0.0002 Score=70.67 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=88.4
Q ss_pred ccceecccHHHHHHHHhcC----------C-CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG----------P-SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.+..+++|.+.+... + ...+-+.++|++|+|||+||+.+++ ....+| +.+. . ..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f---i~i~--~----s~ 214 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF---IRVV--G----SE 214 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE---EEEe--h----HH
Confidence 8999998888887766421 0 2356788999999999999999998 333333 1221 1 11
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--C----------ch---hHHHHHhhCCC--C
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--N----------SE---IWSDLEELLPD--D 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~----------~~---~~~~l~~~l~~--~ 318 (394)
+ .....+. ....+...+.......+.+|+||++.. . .. .+..+...+.. .
T Consensus 215 l----~~k~~ge---------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 215 F----VQKYLGE---------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred H----HHHhcch---------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1 1111110 222233333333356789999999764 0 00 11222222221 2
Q ss_pred CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
..+..||.||..++.....-.. .-...+. +++. +.++...+|+.+....+
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~-----~~~P--~~~~R~~Il~~~~~~~~ 333 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIE-----FPLP--DRRQKRLIFQTITSKMN 333 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEE-----eCCc--CHHHHHHHHHHHHhcCC
Confidence 2356788888766433221001 1245567 8888 88888888877654333
No 87
>PRK08116 hypothetical protein; Validated
Probab=97.86 E-value=0.0001 Score=69.03 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=58.8
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 289 (394)
.-+.++|..|+|||.||..+++ ....+-..+++++ ...++..+......... .+... +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~~~----~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK------EDENE----IIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcccc------ccHHH----HHHHh
Confidence 3577999999999999999999 4433333455664 34455555554432211 02222 22334
Q ss_pred cCCeEEEEEeCCCC-CchhHHH--HHhhCCC-CCCCcEEEEecCCh
Q 016120 290 TNKKYFIVLDDVFD-NSEIWSD--LEELLPD-DENGSRVLITVTDP 331 (394)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~-~~~gs~IivTTR~~ 331 (394)
.+-. ||||||+.. ....|.. +...+.. -.+|..+|+||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4333 899999954 2344533 3332221 13456688888754
No 88
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00041 Score=70.65 Aligned_cols=150 Identities=12% Similarity=0.036 Sum_probs=93.2
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccc-----------------ccCeeEEEE
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKF-----------------YFDCLAWVR 246 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~-----------------~F~~~~wv~ 246 (394)
+++|-+...+.+...+..+. -.....++|+.|+||||+|+.+.+.. .-.+ |++ .+.+.
T Consensus 15 eiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld 92 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD 92 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence 89999998999988886653 34466799999999999999776521 0000 111 11111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH--c--cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCC
Q 016120 247 VSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY--L--TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENG 321 (394)
Q Consensus 247 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--l--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~g 321 (394)
.+.+. ..+++.+.+... . .+++-++|+|++.. +.+..+.|...+-.-...
T Consensus 93 aas~~-------------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 93 AASNR-------------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred ccccc-------------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 11111 233333333221 1 24566899999988 666777777777655566
Q ss_pred cEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 322 SRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 322 s~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
+++|++|.++ .+.... .+....++ +.++ +.++....+.+.+.
T Consensus 148 t~FIL~ttd~~kL~~tI--~SRc~~~~-----F~~L--s~~ei~~~L~~Il~ 190 (535)
T PRK08451 148 VKFILATTDPLKLPATI--LSRTQHFR-----FKQI--PQNSIISHLKTILE 190 (535)
T ss_pred eEEEEEECChhhCchHH--HhhceeEE-----cCCC--CHHHHHHHHHHHHH
Confidence 7777666553 333333 23456788 9999 99888887776543
No 89
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.83 E-value=0.00023 Score=72.12 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=90.0
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccc-----cCeeEEEEeCCC
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-----FDCLAWVRVSIA 250 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~ 250 (394)
++.|.+..+++|.+.+... -...+-+.++|++|+|||++|+.+++ ....+ .....++++...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeEEeccch
Confidence 7888999999998876421 12345678999999999999999998 33332 123344444321
Q ss_pred CCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC---C-----chh-----HHHHHhhCC
Q 016120 251 YDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD---N-----SEI-----WSDLEELLP 316 (394)
Q Consensus 251 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~---~-----~~~-----~~~l~~~l~ 316 (394)
+++....+.. ......+.+..++.. .+++++|+||+++. . ... ...+...+.
T Consensus 261 --------eLl~kyvGet------e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 261 --------ELLNKYVGET------ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred --------hhcccccchH------HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 1111110000 001222222333222 35789999999975 0 111 223333332
Q ss_pred CC--CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 317 DD--ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 317 ~~--~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.. ..+..||.||..++.....=.. .-...++ +++. +.++..++|.+++.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~-----~~~P--d~e~r~~Il~~~l~ 379 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR-----IERP--DAEAAADIFSKYLT 379 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEE-----eCCC--CHHHHHHHHHHHhh
Confidence 21 1334455566554332211001 1244577 9999 99999999999865
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=0.00024 Score=71.63 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccC--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFD--CLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
...+.|+|.+|+|||+|++.+.+ +....+. .+++++. ..+...+...+... ..... .
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~----~ 206 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN---------TMEEF----K 206 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC---------cHHHH----H
Confidence 45678999999999999999998 4544432 3445543 33344444444221 22222 2
Q ss_pred HHccCCeEEEEEeCCCC-C-chhH-HHHHhhCCC-CCCCcEEEEecCCh-H-H-------HhhchhcCCCceeeCCccCC
Q 016120 287 DYLTNKKYFIVLDDVFD-N-SEIW-SDLEELLPD-DENGSRVLITVTDP-D-L-------LASLEMENGEKIRRDSVLFG 353 (394)
Q Consensus 287 ~~l~~kr~LlVlDdv~~-~-~~~~-~~l~~~l~~-~~~gs~IivTTR~~-~-v-------~~~~~~~~~~~~~~~~~~~l 353 (394)
+.++ +.-+|||||+.. . ...+ +.+...+.. ..+|..||+||..+ . + ...+ ....+++ +
T Consensus 207 ~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl---~~gl~v~-----i 277 (450)
T PRK00149 207 EKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF---EWGLTVD-----I 277 (450)
T ss_pred HHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh---cCCeeEE-----e
Confidence 2333 234899999976 1 2111 233322211 12345577777653 1 1 2222 2345788 9
Q ss_pred CCCCCChHHHHHHHHHHhC
Q 016120 354 GPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 354 ~~L~~~~~~~~~Lf~~~~~ 372 (394)
++. +.++-..++.+.+.
T Consensus 278 ~~p--d~~~r~~il~~~~~ 294 (450)
T PRK00149 278 EPP--DLETRIAILKKKAE 294 (450)
T ss_pred cCC--CHHHHHHHHHHHHH
Confidence 999 99999999998854
No 91
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.83 E-value=0.00013 Score=77.81 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=84.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccccc-CeeEEEEeCCCCCHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFYF-DCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.+++.- .+...+ .+.+|.. +...+ +.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l----~a 251 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL----LA 251 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH----hh
Confidence 78999999999998887653 3345689999999999999998731 111112 3444431 11111 11
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-C---------chhHHHHHhhCCCCCCCc-EEEEecCC
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-N---------SEIWSDLEELLPDDENGS-RVLITVTD 330 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-~---------~~~~~~l~~~l~~~~~gs-~IivTTR~ 330 (394)
. .. +..+.+.....+.+.+ ..++.+|++|++.. . .+.-+.+...+. +|. ++|-+|..
T Consensus 252 ~---~~-----~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~ 320 (731)
T TIGR02639 252 G---TK-----YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTY 320 (731)
T ss_pred h---cc-----ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCH
Confidence 0 00 0002233333333333 34688999999974 1 111223333332 333 34444433
Q ss_pred hHH------HhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 331 PDL------LASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 331 ~~v------~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
+.. -..+ ...-..++ ++++ +.++...+++..
T Consensus 321 ~e~~~~~~~d~al--~rRf~~i~-----v~~p--~~~~~~~il~~~ 357 (731)
T TIGR02639 321 EEYKNHFEKDRAL--SRRFQKID-----VGEP--SIEETVKILKGL 357 (731)
T ss_pred HHHHHHhhhhHHH--HHhCceEE-----eCCC--CHHHHHHHHHHH
Confidence 221 1111 12234678 9999 999999999864
No 92
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.82 E-value=0.001 Score=71.24 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=89.8
Q ss_pred ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
+.+|.+..+++|+++|... ...-.++.++|++|+||||+|+.+.. .....|-. ++.+...+...+...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccchhc
Confidence 6899999999999888632 22345789999999999999999987 33333321 233333333222111100
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cchh----HHHHHhhCCCC---------------CCCc
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEI----WSDLEELLPDD---------------ENGS 322 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~----~~~l~~~l~~~---------------~~gs 322 (394)
..+. ....+.+.+...- ...-+++||.+.. +... .+.+...+... -.+.
T Consensus 398 ~~g~----------~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 398 YIGS----------MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred cCCC----------CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 1111 1223333333322 2345788999976 2211 23444433211 1233
Q ss_pred EEEEecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 323 RVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 323 ~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
-+|.|+.+..+...+ .+...+++ +.++ +.++-..+.++++
T Consensus 467 ~~i~TaN~~~i~~aL--l~R~~ii~-----~~~~--t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPL--LDRMEVIR-----LSGY--TEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHH--hcceeeee-----cCCC--CHHHHHHHHHHhh
Confidence 344455444433333 34456788 9999 9999888887764
No 93
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00018 Score=74.84 Aligned_cols=170 Identities=9% Similarity=-0.039 Sum_probs=93.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+........... -...++.-.....|......
T Consensus 17 eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCCC
Confidence 89999999999988887643 234567899999999999999976311100000 00011111222222221111
Q ss_pred CCCCccccCc-CHHHHHH---HHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchh
Q 016120 267 PSRVSVIIGE-DYQLKKS---ILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEM 339 (394)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~---~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~ 339 (394)
.......... ..+++.+ .+... ..+++-++|+|++.. +....+.|...+-.....+.+|++|.+ ..+...+
T Consensus 90 d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI-- 167 (585)
T PRK14950 90 DVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI-- 167 (585)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH--
Confidence 0000000011 2233322 22211 124567899999987 456677787777655556666665543 3443333
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.+....+. +.++ +.++....+.+.+.
T Consensus 168 ~SR~~~i~-----f~~l--~~~el~~~L~~~a~ 193 (585)
T PRK14950 168 LSRCQRFD-----FHRH--SVADMAAHLRKIAA 193 (585)
T ss_pred Hhccceee-----CCCC--CHHHHHHHHHHHHH
Confidence 13345677 8888 88887777766543
No 94
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.81 E-value=0.00023 Score=76.01 Aligned_cols=162 Identities=11% Similarity=0.113 Sum_probs=93.3
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..++.+.+.+... +....++.++|+.|+|||+||+.+.. ... ...+.++.+.-.... .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~---~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALG---VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hhc---CCeEEEeCchhhhcc----c
Confidence 6788888888888887632 12345788999999999999999987 332 223455544422111 1
Q ss_pred HHHHhCCCCCCccccCc-CHHHHHHHHHHHccC-CeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEE
Q 016120 260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVL 325 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~-kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Ii 325 (394)
+...++.+.. ..+. ....+ .+.++. ...+++||+++. +++.++.|...+..+ -..+-||
T Consensus 526 ~~~lig~~~g---yvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii 598 (731)
T TIGR02639 526 VSRLIGAPPG---YVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILI 598 (731)
T ss_pred HHHHhcCCCC---CcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence 1222222211 0111 22223 333333 346999999998 677777777766543 1234466
Q ss_pred EecCCh--HHH--------------------hhch---hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 326 ITVTDP--DLL--------------------ASLE---MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 326 vTTR~~--~v~--------------------~~~~---~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+||..- .+. .... .+.-+.++. ++|| +.++-..++.+..
T Consensus 599 ~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~-----F~pL--s~e~l~~Iv~~~L 662 (731)
T TIGR02639 599 MTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIH-----FNPL--SEEVLEKIVQKFV 662 (731)
T ss_pred ECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEE-----cCCC--CHHHHHHHHHHHH
Confidence 676321 111 0010 011245677 9999 9999888887654
No 95
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.77 E-value=0.0017 Score=69.83 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=36.6
Q ss_pred ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..++.|.+++... ..+..++.++|++|+|||++|+.+.+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6889999999988876422 22345788999999999999999998
No 96
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00045 Score=72.43 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=92.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc---c-CeeEE-EEeCCCCCHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY---F-DCLAW-VRVSIAYDFGKMLDDII 261 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~w-v~vs~~~~~~~i~~~i~ 261 (394)
+++|.+..+..+..++..+. -.....++|+.|+||||+|+.+....--... + .|..- -+....++...
T Consensus 19 dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie------ 91 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE------ 91 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE------
Confidence 89999999999999887642 3456678999999999999988752100000 0 00000 00000111000
Q ss_pred HHhCCCCCCccccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhc
Q 016120 262 KSVMPPSRVSVIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASL 337 (394)
Q Consensus 262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~ 337 (394)
+.+.. .... +...+.+.+... ..+++-++|+|++.. ....+..|...+-.....+.+|+ |+....+....
T Consensus 92 --idaas----n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 92 --MDAAS----NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred --Eeccc----cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 00000 0011 223333333222 235667899999987 56677888777765444555454 55555555443
Q ss_pred hhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
.+....++ +.++ +.++....+...
T Consensus 166 --~SRcq~ie-----F~~L--~~eeI~~~L~~i 189 (725)
T PRK07133 166 --LSRVQRFN-----FRRI--SEDEIVSRLEFI 189 (725)
T ss_pred --HhhceeEE-----ccCC--CHHHHHHHHHHH
Confidence 23456788 9999 998887777664
No 97
>PRK08181 transposase; Validated
Probab=97.75 E-value=7.9e-05 Score=69.57 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=54.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 289 (394)
.-+.++|++|+|||.||..+.+ ........++|+++ .+++..+....... +.......+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~~~~---------~~~~~l~~l---- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVARREL---------QLESAIAKL---- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHHhCC---------cHHHHHHHH----
Confidence 3478999999999999999987 33333334455543 44555543321110 222222222
Q ss_pred cCCeEEEEEeCCCC-CchhH--HHHHhhCCCC-CCCcEEEEecCCh
Q 016120 290 TNKKYFIVLDDVFD-NSEIW--SDLEELLPDD-ENGSRVLITVTDP 331 (394)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~~-~~gs~IivTTR~~ 331 (394)
.+.=||||||+.. ....| ..+...+... .++ .+||||..+
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 1345999999975 22222 2233333221 223 488888764
No 98
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.75 E-value=0.00019 Score=67.24 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=101.8
Q ss_pred cHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120 194 GREELFDLLIEGP-SGLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS 268 (394)
Q Consensus 194 ~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 268 (394)
.++++.++|.... .+.+-+.|||.+|.|||++++.+....-.. ..--.++.|.+...++...++..|+..++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 4455555554442 345678999999999999999998531111 01115677888899999999999999999986
Q ss_pred CCccccCc-CHHHHHHHHHHHccC-CeEEEEEeCCCC----CchhHHHHH---hhCCCCCCCcEEEEecCChHHHhhch-
Q 016120 269 RVSVIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVFD----NSEIWSDLE---ELLPDDENGSRVLITVTDPDLLASLE- 338 (394)
Q Consensus 269 ~~~~~~~~-~~~~~~~~l~~~l~~-kr~LlVlDdv~~----~~~~~~~l~---~~l~~~~~gs~IivTTR~~~v~~~~~- 338 (394)
. .. +...+.......++. +--+||+|++.+ +...-..+. ..|.+.-+=+-|.+-|+.-.-+-...
T Consensus 125 ~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 125 R-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred C-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 5 22 555555566666643 566899999987 222222222 23322223345666555421111110
Q ss_pred -hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCCCC
Q 016120 339 -MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENY 379 (394)
Q Consensus 339 -~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~~~ 379 (394)
..+...++. |++- +.+++...|+...-...|....
T Consensus 200 QLa~RF~~~~-----Lp~W-~~d~ef~~LL~s~e~~LPLr~~ 235 (302)
T PF05621_consen 200 QLASRFEPFE-----LPRW-ELDEEFRRLLASFERALPLRKP 235 (302)
T ss_pred HHHhccCCcc-----CCCC-CCCcHHHHHHHHHHHhCCCCCC
Confidence 012234555 6655 2456666666554334444433
No 99
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.74 E-value=0.00019 Score=77.57 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=83.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccccc-CeeEEEEeCCCCCHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFYF-DCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.++... .+.... ...+|. + +...+
T Consensus 180 ~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l------ 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL------ 246 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH------
Confidence 68999999999999997653 2344689999999999999987731 111111 244553 1 22111
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC--C------chhH-HHHHhhCCCCCCCcEEEEecCChH
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD--N------SEIW-SDLEELLPDDENGSRVLITVTDPD 332 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~--~------~~~~-~~l~~~l~~~~~gs~IivTTR~~~ 332 (394)
+.+.. +..+.+.....+.+.+ ..++.+|++|++.. . .... +-|...+..+. -++|-+|..+.
T Consensus 247 -~ag~~-----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~--l~~IgaTt~~e 318 (821)
T CHL00095 247 -LAGTK-----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE--LQCIGATTLDE 318 (821)
T ss_pred -hccCC-----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC--cEEEEeCCHHH
Confidence 11111 1112333333333322 35689999999964 0 1112 22333332222 34455554443
Q ss_pred HHhhc----hhcCCCceeeCCccCCCCCCCChHHHHHHHHH
Q 016120 333 LLASL----EMENGEKIRRDSVLFGGPLIRLKHEAWQFFIL 369 (394)
Q Consensus 333 v~~~~----~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~ 369 (394)
..... +......++. ++.. +.++...+++.
T Consensus 319 y~~~ie~D~aL~rRf~~I~-----v~ep--~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVY-----VGEP--SVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEe-----cCCC--CHHHHHHHHHH
Confidence 22111 0012345667 8888 88888777764
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00023 Score=71.32 Aligned_cols=135 Identities=12% Similarity=0.129 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
..-+.|+|+.|+|||+|++.+++ .+......+++++ ...+...+...+... .. ..+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~~----~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------EM----QRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------hH----HHHHHH
Confidence 34678999999999999999998 4433223344554 234444555544321 11 223333
Q ss_pred ccCCeEEEEEeCCCC-CchhH--HHHHhhCCC-CCCCcEEEEecCC-hH----HHhhchh-cCCCceeeCCccCCCCCCC
Q 016120 289 LTNKKYFIVLDDVFD-NSEIW--SDLEELLPD-DENGSRVLITVTD-PD----LLASLEM-ENGEKIRRDSVLFGGPLIR 358 (394)
Q Consensus 289 l~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~-~~~gs~IivTTR~-~~----v~~~~~~-~~~~~~~~~~~~~l~~L~~ 358 (394)
+. ..-+|++||+.. ....| +.+...+.. ...|..||+||.. +. +...+.+ -....++. ++++
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~-----l~~p-- 271 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIP-----LHPL-- 271 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEe-----cCCC--
Confidence 33 344888999976 22111 223222211 1235568888754 22 1111110 12346788 9999
Q ss_pred ChHHHHHHHHHHhC
Q 016120 359 LKHEAWQFFILHYG 372 (394)
Q Consensus 359 ~~~~~~~Lf~~~~~ 372 (394)
+.++-..++.+++.
T Consensus 272 d~e~r~~iL~~k~~ 285 (445)
T PRK12422 272 TKEGLRSFLERKAE 285 (445)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988753
No 101
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.73 E-value=0.00015 Score=78.24 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=36.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+..
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 78999999999999987653 33445899999999999999987
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00046 Score=71.57 Aligned_cols=168 Identities=9% Similarity=-0.005 Sum_probs=90.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+.....|.+.+..+. -...+.++|+.|+||||+|+.+.+..--.+..+. ..++.-.....|...-..
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCCCC
Confidence 89999999999998887642 2455678999999999999888763111000000 000000000111000000
Q ss_pred CCCCc---cccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhchh
Q 016120 267 PSRVS---VIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLEM 339 (394)
Q Consensus 267 ~~~~~---~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~ 339 (394)
..... ..... +..++.+.+... ..+++-++|+|++.. +....+.|...+-.-...+.+|+ ||....+...+
T Consensus 89 d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI-- 166 (576)
T PRK14965 89 DVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI-- 166 (576)
T ss_pred CeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH--
Confidence 00000 00001 222222222211 134556899999987 56667778777765555666665 54445555444
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....++ +.++ +.++....+...+
T Consensus 167 ~SRc~~~~-----f~~l--~~~~i~~~L~~i~ 191 (576)
T PRK14965 167 LSRCQRFD-----FRRI--PLQKIVDRLRYIA 191 (576)
T ss_pred HHhhhhhh-----cCCC--CHHHHHHHHHHHH
Confidence 23455666 8888 8887776666543
No 103
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.00026 Score=72.72 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=77.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccccccc--CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYF--DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 287 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 287 (394)
..+.|+|..|+|||.|++.+++ .....+ ..+++++ ...+..++...+... ..+ .+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~~----~f~~ 373 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KGD----SFRR 373 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cHH----HHHH
Confidence 4578999999999999999998 443322 2345554 334444444433221 111 2223
Q ss_pred HccCCeEEEEEeCCCC--CchhHH-HHHhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCceeeCCccCCC
Q 016120 288 YLTNKKYFIVLDDVFD--NSEIWS-DLEELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKIRRDSVLFGG 354 (394)
Q Consensus 288 ~l~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l~ 354 (394)
.+.. -=+|||||+.. ....|. .+...+.. ..+|..|||||... .+...+ ...-++. |+
T Consensus 374 ~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf---~~GLvv~-----I~ 444 (617)
T PRK14086 374 RYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF---EWGLITD-----VQ 444 (617)
T ss_pred Hhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh---hcCceEE-----cC
Confidence 3322 24788999987 233332 22222221 13355688888763 222333 4566788 99
Q ss_pred CCCCChHHHHHHHHHHhC
Q 016120 355 PLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 355 ~L~~~~~~~~~Lf~~~~~ 372 (394)
+. +.+.-..++.+++.
T Consensus 445 ~P--D~EtR~aIL~kka~ 460 (617)
T PRK14086 445 PP--ELETRIAILRKKAV 460 (617)
T ss_pred CC--CHHHHHHHHHHHHH
Confidence 99 99999999998854
No 104
>PRK06620 hypothetical protein; Validated
Probab=97.71 E-value=0.00018 Score=64.98 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=65.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 289 (394)
+.+-|+|++|+|||+|++.+++... . .++. ..+. .. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~------------------------~~--------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF------------------------NE--------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh------------------------ch--------hHH
Confidence 5688999999999999999887421 1 1111 0000 00 011
Q ss_pred cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-------HHhhchhcCCCceeeCCccCCCCCCCChH
Q 016120 290 TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-------LLASLEMENGEKIRRDSVLFGGPLIRLKH 361 (394)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-------v~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 361 (394)
+ ..-+|++||+.. ....+-.+...+. .+|..||+|++.+. ..+.+ ...-+++ ++++ +.+
T Consensus 84 ~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl---~~gl~~~-----l~~p--d~~ 150 (214)
T PRK06620 84 E-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRI---KSVLSIL-----LNSP--DDE 150 (214)
T ss_pred h-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHH---hCCceEe-----eCCC--CHH
Confidence 1 234688999976 1112222222222 45678999887532 22222 3455888 9999 999
Q ss_pred HHHHHHHHHhC
Q 016120 362 EAWQFFILHYG 372 (394)
Q Consensus 362 ~~~~Lf~~~~~ 372 (394)
+-..++.+.+.
T Consensus 151 ~~~~~l~k~~~ 161 (214)
T PRK06620 151 LIKILIFKHFS 161 (214)
T ss_pred HHHHHHHHHHH
Confidence 98888888754
No 105
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00049 Score=69.07 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccccccc-C-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYF-D-CLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
..-+.|+|.+|+|||+|++.+++ ...... . .++|++. ..+..++...+... .... +.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~----f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNE----FR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHH----HH
Confidence 34588999999999999999998 444333 2 3456653 44556666555322 2222 22
Q ss_pred HHccCCeEEEEEeCCCC--CchhH-HHHHhhCCC-CCCCcEEEEecC-ChHHHhh----chh-cCCCceeeCCccCCCCC
Q 016120 287 DYLTNKKYFIVLDDVFD--NSEIW-SDLEELLPD-DENGSRVLITVT-DPDLLAS----LEM-ENGEKIRRDSVLFGGPL 356 (394)
Q Consensus 287 ~~l~~kr~LlVlDdv~~--~~~~~-~~l~~~l~~-~~~gs~IivTTR-~~~v~~~----~~~-~~~~~~~~~~~~~l~~L 356 (394)
+....+.-+|++||+.. +...+ +.+...+.. ...|..||+||. .+.-... +.+ -....++. +++.
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~-----i~~p 263 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAK-----LEPP 263 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEe-----eCCC
Confidence 22223455899999985 12212 223222211 123456888874 4422211 100 02345777 9999
Q ss_pred CCChHHHHHHHHHHhC
Q 016120 357 IRLKHEAWQFFILHYG 372 (394)
Q Consensus 357 ~~~~~~~~~Lf~~~~~ 372 (394)
+.+.-..++++.+.
T Consensus 264 --d~e~r~~IL~~~~~ 277 (440)
T PRK14088 264 --DEETRKKIARKMLE 277 (440)
T ss_pred --CHHHHHHHHHHHHH
Confidence 99999999988754
No 106
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00066 Score=68.30 Aligned_cols=152 Identities=10% Similarity=0.001 Sum_probs=89.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccc---------------------cccCeeEEE
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK---------------------FYFDCLAWV 245 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~~~wv 245 (394)
+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+..--. .+++. +++
T Consensus 18 diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~~i 95 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-LEI 95 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-EEe
Confidence 89999999999998887642 23567789999999999998886521100 01111 111
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 016120 246 RVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSR 323 (394)
Q Consensus 246 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~ 323 (394)
......... +...+.+.+... ..+++-++|+|++.. +....+.|...+-....++.
T Consensus 96 ~g~~~~gid----------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 96 DGASHRGIE----------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred eccccCCHH----------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 100000000 111222222111 135667889999987 45566777777765555666
Q ss_pred EEEecC-ChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 324 VLITVT-DPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 324 IivTTR-~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+|++|. ...+...+ .+....++ +.++ +.++....+.+.+
T Consensus 154 ~Il~t~~~~kl~~tI--~sRc~~v~-----f~~l--~~~el~~~L~~~~ 193 (451)
T PRK06305 154 FFLATTEIHKIPGTI--LSRCQKMH-----LKRI--PEETIIDKLALIA 193 (451)
T ss_pred EEEEeCChHhcchHH--HHhceEEe-----CCCC--CHHHHHHHHHHHH
Confidence 666553 33343333 23456778 9999 9988877776654
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.65 E-value=0.0011 Score=71.91 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=76.5
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..++.+.+.+... +....++.++|+.|+|||++|+.+... ....-...+-++.+.-.....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~---- 639 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS---- 639 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch----
Confidence 6899999999999888642 123457889999999999999999872 222112233444443222111
Q ss_pred HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEE
Q 016120 260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVLI 326 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Iiv 326 (394)
...-++.+.. ..+. ....+...++. ....+|+||++.. +++.++.+...+..+ -..+-||+
T Consensus 640 ~~~l~g~~~g---~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 640 VARLIGAPPG---YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred HHHhcCCCCC---ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 1111222211 0111 11222222221 2335899999998 778888888777443 13344777
Q ss_pred ecCC
Q 016120 327 TVTD 330 (394)
Q Consensus 327 TTR~ 330 (394)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7775
No 108
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.64 E-value=0.00067 Score=58.50 Aligned_cols=135 Identities=15% Similarity=0.157 Sum_probs=75.9
Q ss_pred eecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC----cccc--------------cccCeeEEEEeCCCC
Q 016120 190 EFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN----DHVK--------------FYFDCLAWVRVSIAY 251 (394)
Q Consensus 190 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~--------------~~F~~~~wv~vs~~~ 251 (394)
|-++..+.+.+.+..+ .-...+.++|+.|+||+++|..+... .... ....-..|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 3445556666666554 23456789999999999999877642 1110 112223344322210
Q ss_pred CHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 016120 252 DFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRV 324 (394)
Q Consensus 252 ~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~I 324 (394)
.. ..++.. .+.+.+ .++.=++|+||+.. +.+.++.|...+-.-..++.+
T Consensus 80 -----------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 80 -----------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp -----------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred -----------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 01 233333 222222 23566899999998 778888888888766778898
Q ss_pred EEecCChH-HHhhchhcCCCceeeCCccCCCCC
Q 016120 325 LITVTDPD-LLASLEMENGEKIRRDSVLFGGPL 356 (394)
Q Consensus 325 ivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L 356 (394)
|++|.+.+ +.... .+....++ +.+|
T Consensus 136 iL~t~~~~~il~TI--~SRc~~i~-----~~~l 161 (162)
T PF13177_consen 136 ILITNNPSKILPTI--RSRCQVIR-----FRPL 161 (162)
T ss_dssp EEEES-GGGS-HHH--HTTSEEEE-----E---
T ss_pred EEEECChHHChHHH--HhhceEEe-----cCCC
Confidence 88888763 44444 34566677 7666
No 109
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0015 Score=67.50 Aligned_cols=165 Identities=10% Similarity=-0.042 Sum_probs=93.5
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc---ccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF---YFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+..-... .+.|. .. ..-..|...
T Consensus 17 diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~------~C----~~C~~i~~~ 85 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG------EC----SSCKSIDND 85 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc------cc----hHHHHHHcC
Confidence 89999999999999987643 345678999999999999999876311110 01110 00 000011000
Q ss_pred hCCCCCCccccCc-CHHHHHHHH---HHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhh
Q 016120 264 VMPPSRVSVIIGE-DYQLKKSIL---RDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLAS 336 (394)
Q Consensus 264 l~~~~~~~~~~~~-~~~~~~~~l---~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~ 336 (394)
-...-........ ..+++.+.. ... ..+++-++|+|++.. +...++.|...+......+.+|++|.. ..+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000000000011 233332222 211 235666899999988 566778888877665566666665543 444444
Q ss_pred chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+ .+....++ +.++ +.++....+.+.+
T Consensus 166 I--~SRc~~~~-----f~~l--~~~el~~~L~~i~ 191 (563)
T PRK06647 166 I--KSRCQHFN-----FRLL--SLEKIYNMLKKVC 191 (563)
T ss_pred H--HHhceEEE-----ecCC--CHHHHHHHHHHHH
Confidence 3 23455678 8999 8888777776654
No 110
>PRK10536 hypothetical protein; Provisional
Probab=97.63 E-value=0.0008 Score=61.89 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=39.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeE
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLA 243 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 243 (394)
.+.+++.....++.+|... ..+.+.|+.|+|||+||..+..+.-....|+..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred cccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 5677888888999988653 4888999999999999988876422233454433
No 111
>PRK08118 topology modulation protein; Reviewed
Probab=97.63 E-value=2.6e-05 Score=67.72 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=27.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccc-cccCeeEE
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVK-FYFDCLAW 244 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 244 (394)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999854443 45777775
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.62 E-value=0.00094 Score=72.43 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=73.8
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..++.+...+... +....++.++|+.|+|||++|+.+.+. ....-...+.++++.-.. ...
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~~--- 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KHS--- 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hhh---
Confidence 6889999988888887532 222357889999999999999999862 211112234444433211 111
Q ss_pred HHHHhCCCCCCccccCcCHHHHHHHHHHHccC-CeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEE
Q 016120 260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN-KKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVLI 326 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Iiv 326 (394)
+..-++.+.. ....+.. ..+.+.++. ..-+|+||++.. ++..+..+...+..+ ...+-||+
T Consensus 643 ~~~LiG~~pg---y~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 643 VSRLVGAPPG---YVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred HHHHhCCCCc---ccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 1112222211 0111111 122333322 236999999987 677788877766433 12233777
Q ss_pred ecCC
Q 016120 327 TVTD 330 (394)
Q Consensus 327 TTR~ 330 (394)
||..
T Consensus 717 TSN~ 720 (857)
T PRK10865 717 TSNL 720 (857)
T ss_pred eCCc
Confidence 8765
No 113
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.61 E-value=0.0018 Score=66.19 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=83.7
Q ss_pred ccceecccHHHHHHHHh---cC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLI---EG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
++.|.+..++++.+.+. .. ....+-+.++|++|+|||+||+.+++. ...+ ++.++. ..+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~~ 124 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SDF 124 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HHH
Confidence 88998877766655443 11 122345779999999999999999883 3222 222221 111
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C----------chhHHH----HHhhCC--CCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N----------SEIWSD----LEELLP--DDE 319 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~----------~~~~~~----l~~~l~--~~~ 319 (394)
.....+. ....+...+.......+.+|+||++.. . ...+.. +...+. ...
T Consensus 125 ----~~~~~g~---------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 125 ----VEMFVGV---------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred ----HHHHhcc---------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111110 223344444444455779999999955 0 011222 222221 122
Q ss_pred CCcEEEEecCChHHHh-hchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 320 NGSRVLITVTDPDLLA-SLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~-~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
.+-.||.||..++... .+-. ..-...+. ++.. +.++-.++|..++..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~-----i~~P--d~~~R~~il~~~l~~ 240 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVV-----VDLP--DIKGREEILKVHAKN 240 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEE-----cCCC--CHHHHHHHHHHHHhc
Confidence 3445566666543222 1100 01245677 8888 888888888877644
No 114
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.60 E-value=0.00051 Score=60.28 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=69.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE---EeCCCCCHHHH------HHHHHHHhCCCCCCccccCc-C-
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV---RVSIAYDFGKM------LDDIIKSVMPPSRVSVIIGE-D- 277 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~i------~~~i~~~l~~~~~~~~~~~~-~- 277 (394)
-.+++|+|..|.|||||.+.++.- . ......+++ ++. ..+.... .-++++.++........... +
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 358899999999999999999873 2 223344443 222 1122221 11245555443211111222 2
Q ss_pred HHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CC-CcEEEEecCChHHHhhc
Q 016120 278 YQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-EN-GSRVLITVTDPDLLASL 337 (394)
Q Consensus 278 ~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~v~~~~ 337 (394)
-+...-.+...+...+-+++||+--. +....+.+...+..- .. |..||++|.+......+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 22223334455566778899999876 444445555444322 22 66788888887765444
No 115
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0021 Score=66.47 Aligned_cols=168 Identities=10% Similarity=-0.030 Sum_probs=91.6
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+.....+.+++..+. -...+.++|+.|+||||+|+.+....-..+.-+ ..+++.-.....|......
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSLM 88 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCCC
Confidence 89999999999999987653 345667899999999999988865211000000 0000100111111110000
Q ss_pred CCCCccccCc-CHH---HHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhchh
Q 016120 267 PSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLEM 339 (394)
Q Consensus 267 ~~~~~~~~~~-~~~---~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~ 339 (394)
.......... ..+ ++.+.+... ..++.-++|+|++.. +...++.|...+.....+..+|+ ||....+...+
T Consensus 89 dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI-- 166 (559)
T PRK05563 89 DVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI-- 166 (559)
T ss_pred CeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH--
Confidence 0000000011 222 222222211 135667889999987 56677888777765444555554 44444444433
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....+. +.++ +.++....+.+.+
T Consensus 167 ~SRc~~~~-----f~~~--~~~ei~~~L~~i~ 191 (559)
T PRK05563 167 LSRCQRFD-----FKRI--SVEDIVERLKYIL 191 (559)
T ss_pred HhHheEEe-----cCCC--CHHHHHHHHHHHH
Confidence 23345677 8899 8888877776654
No 116
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0014 Score=63.30 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=89.0
Q ss_pred ccce-ecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccccc---Ce---e--EEEEeCCCCCHHHHH
Q 016120 187 DINE-FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF---DC---L--AWVRVSIAYDFGKML 257 (394)
Q Consensus 187 ~~~G-r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~---~--~wv~vs~~~~~~~i~ 257 (394)
.++| -+..++.+.+.+..+ .-.....++|+.|+||||+|+.+.+..--.+.. .| . .++.....+|...+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i- 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV- 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe-
Confidence 4566 555666666666543 235567899999999999998885521000000 00 0 00000001110000
Q ss_pred HHHHHHhCCCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120 258 DDIIKSVMPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 331 (394)
... -.. ..+++.+.+... ..+.+=++|+|++.. +....+.|...+-.-..++.+|++|.++
T Consensus 84 -------~~~------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 84 -------APD------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred -------ccc------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 000 001 233333332221 234556799999987 6667778888887666777777777654
Q ss_pred -HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHH
Q 016120 332 -DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFIL 369 (394)
Q Consensus 332 -~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~ 369 (394)
.+...+ .+....++ +.++ +.++....+.+
T Consensus 151 ~~ll~TI--rSRc~~i~-----~~~~--~~~~~~~~L~~ 180 (329)
T PRK08058 151 HQILPTI--LSRCQVVE-----FRPL--PPESLIQRLQE 180 (329)
T ss_pred HhCcHHH--Hhhceeee-----CCCC--CHHHHHHHHHH
Confidence 444444 34567788 9999 99988777765
No 117
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.56 E-value=0.0013 Score=70.40 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=88.0
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.+..+++|.+.+.-. -...+-+.++|++|+|||++|+.+++ +...+| +.+.. .
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~~----~- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVRG----P- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEeh----H-
Confidence 7788888887777765421 12344578899999999999999998 444333 22211 1
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-------C--c----hhHHHHHhhCCC--CCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-------N--S----EIWSDLEELLPD--DEN 320 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-------~--~----~~~~~l~~~l~~--~~~ 320 (394)
+++...- +.+...+...+...-...+++|+||++.. . . .....+...+.. ...
T Consensus 522 ---~l~~~~v---------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 ---EILSKWV---------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred ---HHhhccc---------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 1111111 11223333333333345789999999864 0 0 012223333332 122
Q ss_pred CcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCC
Q 016120 321 GSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLE 377 (394)
Q Consensus 321 gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~ 377 (394)
+--||.||..++.....-.. .-...+. +++. +.++-.++|+.+....+..
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~-----v~~P--d~~~R~~i~~~~~~~~~~~ 641 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLIL-----VPPP--DEEARKEIFKIHTRSMPLA 641 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEE-----eCCc--CHHHHHHHHHHHhcCCCCC
Confidence 34455577665443322111 2356677 8888 8888888887765544433
No 118
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.54 E-value=0.00044 Score=68.93 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=88.7
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.+..+++|.+.+... -....-+.++|++|+|||++|+.+++ +....| +.+... .
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s----e 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS----E 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----h
Confidence 7889999998888877421 02344677999999999999999998 444444 222111 1
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--C----------chh---HHHHHhhCC--CC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--N----------SEI---WSDLEELLP--DD 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~----------~~~---~~~l~~~l~--~~ 318 (394)
+ .....+ .....+...+.....+.+.+|+||++.. . ... ...+...+. ..
T Consensus 253 L----~~k~~G---------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 L----IQKYLG---------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred h----hhhhcc---------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1 111100 0222223333333345788999999753 0 000 111222221 11
Q ss_pred CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
..+.+||.||...+.....-.. .-...+. +++. +.++..++|..++....
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~-----~~~P--d~~~R~~Il~~~~~k~~ 371 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIE-----FPNP--DEKTKRRIFEIHTSKMT 371 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEE-----eCCC--CHHHHHHHHHHHHhcCC
Confidence 3356788888766444332101 1245666 8888 88999999987754433
No 119
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.54 E-value=0.00042 Score=63.76 Aligned_cols=116 Identities=8% Similarity=0.094 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccc
Q 016120 195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVII 274 (394)
Q Consensus 195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~ 274 (394)
+..+.+.......+...+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-........
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~~~~----- 151 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSNSET----- 151 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhhccc-----
Confidence 33444443322223456789999999999999999984 333233445554 34444444433221100
Q ss_pred CcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHH--HHhhCCCC-CCCcEEEEecCC
Q 016120 275 GEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSD--LEELLPDD-ENGSRVLITVTD 330 (394)
Q Consensus 275 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~~-~~gs~IivTTR~ 330 (394)
+...+. +.+. +.=||||||+.. ....|.. +...+... .+.-.+||||-.
T Consensus 152 --~~~~~l----~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 152 --SEEQLL----NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred --cHHHHH----HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 222222 2343 344889999976 3455553 22222211 112336666664
No 120
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0013 Score=62.91 Aligned_cols=170 Identities=10% Similarity=0.024 Sum_probs=96.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cc----------ccccCeeEEEEeCCCCCH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HV----------KFYFDCLAWVRVSIAYDF 253 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~----------~~~F~~~~wv~vs~~~~~ 253 (394)
+++|.+..++.+...+..+. -....-++|+.|+||+++|..+.... .. ....+-..|+.-....+-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 67899999999888887652 34688899999999999987775421 10 111223345422100000
Q ss_pred HHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE
Q 016120 254 GKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI 326 (394)
Q Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv 326 (394)
..+-..-+...+.... .... ..++.. .+.+.+ .+++-++|+|++.. +....+.|...+-.-. .+.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~---~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 84 KLITASEAEEAGLKRK---APPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred cccchhhhhhcccccc---ccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 0000111111111000 0011 233332 233333 35677899999988 6667777777775444 345555
Q ss_pred ecC-ChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 327 TVT-DPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 327 TTR-~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+|. ...+...+ .+....++ +.++ +.++..+.+.+..
T Consensus 159 i~~~~~~Ll~TI--~SRcq~i~-----f~~l--~~~~~~~~L~~~~ 195 (314)
T PRK07399 159 IAPSPESLLPTI--VSRCQIIP-----FYRL--SDEQLEQVLKRLG 195 (314)
T ss_pred EECChHhCcHHH--HhhceEEe-----cCCC--CHHHHHHHHHHhh
Confidence 544 44555544 34567888 9999 9999999888763
No 121
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.00018 Score=66.72 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+.++|++|+|||+||..+.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 34578999999999999999987
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.52 E-value=0.0004 Score=75.11 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=75.4
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..++.+.+.+... +....++.++|+.|+|||.||+.+... .-......+=++++.-.+ -..
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~----~~~ 640 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE----AHT 640 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh----hhh
Confidence 7899999999998888531 234567899999999999999888662 211111112222222111 011
Q ss_pred HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEE
Q 016120 260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE-----------NGSRVLI 326 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~Iiv 326 (394)
+..-++.+.. ..+. ....+...++ +....+|+||++.. ++..++.+...+..+. ..+-||+
T Consensus 641 ~~~l~g~~~g---yvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 641 VSRLKGSPPG---YVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred hccccCCCCC---cccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 1112222211 0111 1122333333 24557999999987 6777777776665442 4566777
Q ss_pred ecCC
Q 016120 327 TVTD 330 (394)
Q Consensus 327 TTR~ 330 (394)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7654
No 123
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.52 E-value=0.00047 Score=66.78 Aligned_cols=106 Identities=15% Similarity=0.008 Sum_probs=64.4
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-ccCe-eEEEEeCCCC-CHHHHHHHHHHHhCCCCCC
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-YFDC-LAWVRVSIAY-DFGKMLDDIIKSVMPPSRV 270 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~ 270 (394)
...++++.+..-..+. ...|+|..|+|||||++.+.+ .+.. +-+. ++|+.+.+.. .+.+++..+...+.....+
T Consensus 119 ~~~RvID~l~PiGkGQ-R~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQ-RGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCCCc-eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 3455777777544343 457999999999999999887 3332 2234 4677777644 5777888877766544321
Q ss_pred ccccCc-CHHHHHHHHHHHc--cCCeEEEEEeCCC
Q 016120 271 SVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVF 302 (394)
Q Consensus 271 ~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~ 302 (394)
...... ..........+++ ++++.+||+|++.
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 000111 1111222333333 5799999999985
No 124
>PRK12377 putative replication protein; Provisional
Probab=97.52 E-value=0.00042 Score=63.96 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
...+.++|.+|+|||+||..+.+ ........++++++ .+++..+-....... ..... .+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~------~~l~~~l~~~~~~~~--------~~~~~----l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV------PDVMSRLHESYDNGQ--------SGEKF----LQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH------HHHHHHHHHHHhccc--------hHHHH----HHH
Confidence 45788999999999999999999 44444444566654 344444443321110 11211 222
Q ss_pred ccCCeEEEEEeCCCC-CchhHH--HHHhhCCCC-CCCcEEEEecCC
Q 016120 289 LTNKKYFIVLDDVFD-NSEIWS--DLEELLPDD-ENGSRVLITVTD 330 (394)
Q Consensus 289 l~~kr~LlVlDdv~~-~~~~~~--~l~~~l~~~-~~gs~IivTTR~ 330 (394)
+ .+-=||||||+.. ....|. .+...+... .++--+||||-.
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2 3456899999954 133343 333333221 222236777664
No 125
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0024 Score=66.66 Aligned_cols=170 Identities=9% Similarity=-0.041 Sum_probs=92.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|.+.....|..++..+. -...+.++|+.|+||||+|+.++...-....... . ...+..-...+.+......
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcCCCc
Confidence 88999999999988887653 2346678999999999999999763211100000 0 0001111111111111110
Q ss_pred CCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchh
Q 016120 267 PSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEM 339 (394)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~ 339 (394)
.......... ..+.+.+.+... ..+++-++|+|++.. +...++.|...+-.-...+.+|++|.+ ..+...+
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI-- 168 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI-- 168 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH--
Confidence 0000000011 233333332221 124566889999988 566778888777655455555555544 3443333
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....++ +.++ +.++....+.+.+
T Consensus 169 rSRc~~~~-----f~~l--~~~ei~~~L~~ia 193 (620)
T PRK14948 169 ISRCQRFD-----FRRI--PLEAMVQHLSEIA 193 (620)
T ss_pred HhheeEEE-----ecCC--CHHHHHHHHHHHH
Confidence 23456677 8888 8887776666543
No 126
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.51 E-value=0.00024 Score=64.87 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV 247 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 247 (394)
.-.++|+|..|+|||||...+.. .....|.++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34677999999999999999987 57778987777744
No 127
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0021 Score=61.87 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=51.7
Q ss_pred CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120 291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI 368 (394)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~ 368 (394)
+++-++|+|++.. +....+.+...+-.-..++.+|+||.++ .+.... .+....++ +.++ +.+++.+.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI--~SRc~~~~-----~~~~--~~~~~~~~L~ 175 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTI--KSRCQQQA-----CPLP--SNEESLQWLQ 175 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHH--Hhhceeee-----CCCc--CHHHHHHHHH
Confidence 3444557799998 7777888888776655677777777775 444444 24466788 9999 9999988887
Q ss_pred HHh
Q 016120 369 LHY 371 (394)
Q Consensus 369 ~~~ 371 (394)
+..
T Consensus 176 ~~~ 178 (328)
T PRK05707 176 QAL 178 (328)
T ss_pred Hhc
Confidence 653
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.49 E-value=0.0008 Score=72.98 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=36.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++||+.++.++++.|.... ...+.++|.+|+|||++|+.+..
T Consensus 179 ~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 79999999999999997754 33455899999999999999887
No 129
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.48 E-value=0.00065 Score=73.79 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=36.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++||+.++.++++.|.... ...+.++|++|+|||++|..+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999997654 23445799999999999998887
No 130
>CHL00176 ftsH cell division protein; Validated
Probab=97.48 E-value=0.0012 Score=69.07 Aligned_cols=156 Identities=12% Similarity=0.161 Sum_probs=85.2
Q ss_pred ccceecccHHHHHHHH---hcCC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLL---IEGP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
++.|.++..+++.+.+ .... ...+-+.++|++|+|||+||+.+++. ...+ |+.++.. .+
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s----~f 252 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS----EF 252 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----HH
Confidence 7889877666655443 3221 12446789999999999999999883 2222 3333211 11
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C----------chh----HHHHHhhCCC--CC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N----------SEI----WSDLEELLPD--DE 319 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~----------~~~----~~~l~~~l~~--~~ 319 (394)
.....+. ....+...+.......+++|+||++.. . ... +..+...+.. ..
T Consensus 253 ----~~~~~g~---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 253 ----VEMFVGV---------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred ----HHHhhhh---------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 0100000 222334444455567889999999964 0 111 2223222211 23
Q ss_pred CCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 320 NGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
.+-.||.||..++.....-.. .-...+. +++. +.++-.++++.++..
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~-----v~lP--d~~~R~~IL~~~l~~ 368 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQIT-----VSLP--DREGRLDILKVHARN 368 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEE-----ECCC--CHHHHHHHHHHHHhh
Confidence 355566677665433321001 1245667 8888 888888888877543
No 131
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.44 E-value=0.00053 Score=65.37 Aligned_cols=119 Identities=12% Similarity=0.116 Sum_probs=66.5
Q ss_pred ecccHHHHHHHHhcCC--CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120 191 FERGREELFDLLIEGP--SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS 268 (394)
Q Consensus 191 r~~~~~~i~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 268 (394)
+........+++..-. +...-+-++|..|+|||.||..+++. ....-..+.++++ ..++.++.......
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~~~- 206 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSISDG- 206 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHhcC-
Confidence 3334444455554321 13456789999999999999999994 3332223455654 34555555544221
Q ss_pred CCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHH--HHhhC-CCC-CCCcEEEEecCCh
Q 016120 269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSD--LEELL-PDD-ENGSRVLITVTDP 331 (394)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~--l~~~l-~~~-~~gs~IivTTR~~ 331 (394)
+.... +.. + .+-=||||||+.. ....|.. +...+ ... .++-.+|+||-..
T Consensus 207 --------~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 207 --------SVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred --------cHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 22222 222 2 2456899999976 4556743 44433 222 2344577887753
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.42 E-value=0.006 Score=56.93 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=79.1
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHH------------H
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDI------------I 261 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i------------~ 261 (394)
.++++...+..+ .-+.+.|++|+|||+||+.+.+ .... ..+.++.....+...++... .
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 344555555443 2445899999999999999986 3322 23455555555444433221 1
Q ss_pred HHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC----------------CCCcEE
Q 016120 262 KSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD----------------ENGSRV 324 (394)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~----------------~~gs~I 324 (394)
........ ..+..+ ....+....+ +...|++|++.. +.+.+..|...+..+ .++.+|
T Consensus 81 ~~~~~~~~---~~~~~~--~~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frv 154 (262)
T TIGR02640 81 HNVVKLED---IVRQNW--VDNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRV 154 (262)
T ss_pred HHhhhhhc---ccceee--cCchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEE
Confidence 00000000 000000 0001111111 346899999998 566666666655321 135678
Q ss_pred EEecCChHH------HhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 325 LITVTDPDL------LASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 325 ivTTR~~~v------~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
|+|+....- .... ......+. ++.. +.++-.+++.++++
T Consensus 155 IaTsN~~~~~g~~~l~~aL--~~R~~~i~-----i~~P--~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 155 IFTSNPVEYAGVHETQDAL--LDRLITIF-----MDYP--DIDTETAILRAKTD 199 (262)
T ss_pred EEeeCCccccceecccHHH--HhhcEEEE-----CCCC--CHHHHHHHHHHhhC
Confidence 888775311 1111 01223455 7777 77777777777654
No 133
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.41 E-value=0.0014 Score=68.18 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=38.2
Q ss_pred ccceecccHHHHHHHHhcCC---CCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGP---SGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|-++.++++..++.... ....++.|+|++|+||||+++.++.
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987542 2335789999999999999999987
No 134
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.40 E-value=0.0017 Score=56.70 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCc-cc--cc---ccC--eeEEEEeCCCCCHHHHHHHHHHHhCCCCC-CccccCc---
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNND-HV--KF---YFD--CLAWVRVSIAYDFGKMLDDIIKSVMPPSR-VSVIIGE--- 276 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-~~~~~~~--- 276 (394)
-.+++|+|+.|+|||||.+.+..+. ++ .. .|. ...|+ .+ .+.++.++.... .......
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3588999999999999999886421 11 11 111 12232 11 456666664321 1111222
Q ss_pred CHHHHHHHHHHHccCC--eEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120 277 DYQLKKSILRDYLTNK--KYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 277 ~~~~~~~~l~~~l~~k--r~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~ 336 (394)
...+.. .+...+-.+ +=+++||+--. +....+.+...+... ..|..||++|.+.+....
T Consensus 91 Gq~qrl-~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 91 GELQRV-KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred HHHHHH-HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 222233 333444445 67888899866 444444444444321 246678899998876543
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0012 Score=70.38 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=85.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---ccccc-cCeeEEEEeCCCCCHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFY-FDCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~-F~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
.++||+.++.++++.|.... ..-+.++|++|+|||++|+.++..- .+... .++.+|.. +... ++
T Consensus 187 ~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----ll- 254 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LL- 254 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hh-
Confidence 68999999999999887743 2334579999999999999998631 11111 24455531 1111 11
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-----C----chhHHHHHhhCCCCCCCcEEEEecCChH
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-----N----SEIWSDLEELLPDDENGSRVLITVTDPD 332 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-----~----~~~~~~l~~~l~~~~~gs~IivTTR~~~ 332 (394)
.+.. +..+.+.....+.+.+ +.++.+|++|++.. . ..+...+..++...+ .-+||-+|..+.
T Consensus 255 --aG~~-----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E 326 (758)
T PRK11034 255 --AGTK-----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQE 326 (758)
T ss_pred --cccc-----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHH
Confidence 1110 0112233333333333 34678999999974 0 112222333322221 234444444433
Q ss_pred HHhhch----hcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 333 LLASLE----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 333 v~~~~~----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
...... ....-..+. ++++ +.++...+++..
T Consensus 327 ~~~~~~~D~AL~rRFq~I~-----v~eP--s~~~~~~IL~~~ 361 (758)
T PRK11034 327 FSNIFEKDRALARRFQKID-----ITEP--SIEETVQIINGL 361 (758)
T ss_pred HHHHhhccHHHHhhCcEEE-----eCCC--CHHHHHHHHHHH
Confidence 221110 011234677 9999 999999999864
No 136
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00039 Score=72.98 Aligned_cols=120 Identities=16% Similarity=0.234 Sum_probs=74.8
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..++.+.+.+... +....+...+|+.|||||.||+.+... .-+.=+.-+-+++|.-.. + ..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~E-k---Hs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYME-K---HS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHH-H---HH
Confidence 7899999999998888642 345678888999999999999888762 211112233333333211 1 22
Q ss_pred HHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeE-EEEEeCCCC-CchhHHHHHhhCCCC
Q 016120 260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKY-FIVLDDVFD-NSEIWSDLEELLPDD 318 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~-~~~~~~~l~~~l~~~ 318 (394)
+-.-+|.+..+ + ..++ -..|.+..+.++| +|.||+|.. .++.++-+...|-++
T Consensus 566 VSrLIGaPPGY---V--Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 566 VSRLIGAPPGY---V--GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHhCCCCCC---c--eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 33334444331 1 1222 3345556667777 778999998 677888887777654
No 137
>PRK09183 transposase/IS protein; Provisional
Probab=97.39 E-value=0.00038 Score=64.85 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+.|+|++|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4567999999999999999976
No 138
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0021 Score=61.64 Aligned_cols=138 Identities=10% Similarity=0.107 Sum_probs=81.0
Q ss_pred cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-------------------ccCeeEEEEeC
Q 016120 188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-------------------YFDCLAWVRVS 248 (394)
Q Consensus 188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs 248 (394)
++|-+....++..+....+.....+.++|++|+||||+|..+.+..--.. ..+....++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56677778888888875543344588999999999999988876311000 11223334333
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 016120 249 IAYD---FGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRV 324 (394)
Q Consensus 249 ~~~~---~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~I 324 (394)
.... ..+..+++.+....... .++.-++++|++.. +.+.-..+...+-.....+.+
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 3332 22223333322222110 24677899999988 555556666666666667788
Q ss_pred EEecCCh-HHHhhchhcCCCceee
Q 016120 325 LITVTDP-DLLASLEMENGEKIRR 347 (394)
Q Consensus 325 ivTTR~~-~v~~~~~~~~~~~~~~ 347 (394)
|++|.++ .+.... .+....++
T Consensus 143 il~~n~~~~il~tI--~SRc~~i~ 164 (325)
T COG0470 143 ILITNDPSKILPTI--RSRCQRIR 164 (325)
T ss_pred EEEcCChhhccchh--hhcceeee
Confidence 8877743 444444 34455666
No 139
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.35 E-value=0.00032 Score=62.58 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=63.1
Q ss_pred ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe----CCCC--CHHH-------
Q 016120 189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV----SIAY--DFGK------- 255 (394)
Q Consensus 189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----s~~~--~~~~------- 255 (394)
..++.+-...++.|.. ..++.+.|++|.|||.||.....+.-...+|+..+++.- .+.. -+..
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 4456666777888873 458899999999999999887765444467887777622 1111 0110
Q ss_pred ---HHHHHHHHhCCCCCCccccCcCHHHHHHH------HHHHccCC---eEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120 256 ---MLDDIIKSVMPPSRVSVIIGEDYQLKKSI------LRDYLTNK---KYFIVLDDVFD-NSEIWSDLEELLPDDENGS 322 (394)
Q Consensus 256 ---i~~~i~~~l~~~~~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs 322 (394)
-+.+.+..+.... ..+.+.+. -..+++|+ ..++|+|+.++ +++++..+ +...+.||
T Consensus 79 ~~~p~~d~l~~~~~~~--------~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~s 147 (205)
T PF02562_consen 79 YLRPIYDALEELFGKE--------KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGS 147 (205)
T ss_dssp TTHHHHHHHTTTS-TT--------CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-
T ss_pred HHHHHHHHHHHHhChH--------hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCc
Confidence 1111222211110 22222110 01234554 46999999998 56555555 44557799
Q ss_pred EEEEecC
Q 016120 323 RVLITVT 329 (394)
Q Consensus 323 ~IivTTR 329 (394)
|||++=-
T Consensus 148 kii~~GD 154 (205)
T PF02562_consen 148 KIIITGD 154 (205)
T ss_dssp EEEEEE-
T ss_pred EEEEecC
Confidence 9998644
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.34 E-value=0.0016 Score=70.51 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=75.4
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..++.+.+.+... +.....+.++|+.|+|||+||+.+.+ ..-..-...+-++.+.-.+...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~---- 583 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHT---- 583 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcccccc----
Confidence 7899999999998887532 22345677899999999999998876 2211112233344443222111
Q ss_pred HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCe-EEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEE
Q 016120 260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKK-YFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVL 325 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Ii 325 (394)
+...++.+.. ..+. ... .+.+.++.++ .+++||++.. +++.++.+...+-.+ ...+-+|
T Consensus 584 ~~~l~g~~~g---yvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 584 VSKLIGSPPG---YVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred HHHhcCCCCc---ccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 1111222211 0111 222 2334444444 5889999988 777788887776543 2345566
Q ss_pred EecCC
Q 016120 326 ITVTD 330 (394)
Q Consensus 326 vTTR~ 330 (394)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 77664
No 141
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00096 Score=65.42 Aligned_cols=173 Identities=11% Similarity=0.046 Sum_probs=103.2
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
.+.||+.++..+.+++... ....+.+-|.|.+|.|||.+...++.+..-...=.++++++...--....++..|...+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence 7999999999999998764 24567888999999999999999988532211112456665554445677777777776
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHccC--CeEEEEEeCCCC-CchhHHHHHhh--CCCCCCCcEEEE---------ecCC
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYLTN--KKYFIVLDDVFD-NSEIWSDLEEL--LPDDENGSRVLI---------TVTD 330 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~-~~~~~~~l~~~--l~~~~~gs~Iiv---------TTR~ 330 (394)
..... -..+..+.+..+..+..+ ..+|+|||.++. ....-.-+... +|. -+++++|+ |-|.
T Consensus 231 ~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 231 LQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhHHHHH
Confidence 22111 011345666777777654 369999999876 11000111111 122 23444443 2221
Q ss_pred hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 331 PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 331 ~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
..... ....+.-+.|+..|- +.++..++|..+..
T Consensus 306 --LprL~----~~~~~~P~~l~F~PY--Tk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 306 --LPRLN----LDLTIKPKLLVFPPY--TKDQIVEILQQRLS 339 (529)
T ss_pred --hhhhh----hccCCCCceeeecCC--CHHHHHHHHHHHHh
Confidence 11111 111122233338899 99999999998854
No 142
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.33 E-value=0.00085 Score=64.55 Aligned_cols=101 Identities=11% Similarity=0.150 Sum_probs=53.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 289 (394)
..+.++|..|+|||.||..+++ .....-..++++++ ..++..+...-.... .+.... + +.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~------~~l~~~l~~~~~~~~-------~~~~~~---~-~~l 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA------DELIEILREIRFNND-------KELEEV---Y-DLL 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH------HHHHHHHHHHHhccc-------hhHHHH---H-HHh
Confidence 5688999999999999999998 44333334566654 233333332111110 011111 2 222
Q ss_pred cCCeEEEEEeCCCC-CchhH--HHHHhhCCCC-CCCcEEEEecCC
Q 016120 290 TNKKYFIVLDDVFD-NSEIW--SDLEELLPDD-ENGSRVLITVTD 330 (394)
Q Consensus 290 ~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~~-~~gs~IivTTR~ 330 (394)
. .-=||||||+.. ....| ..+...+... .++..+||||..
T Consensus 245 ~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 245 I-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred c-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2 224899999966 22233 3333333221 234457888775
No 143
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.32 E-value=0.0018 Score=70.13 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=38.6
Q ss_pred ccceecccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++||+.+++.|...+..- .....++.+.|.+|||||+|++.|..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 4789999999999988654 33466999999999999999999987
No 144
>PHA00729 NTP-binding motif containing protein
Probab=97.31 E-value=0.0022 Score=57.99 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
++++.+... +...+.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 344445443 356788999999999999999987
No 145
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.25 E-value=0.0015 Score=59.47 Aligned_cols=92 Identities=10% Similarity=-0.003 Sum_probs=52.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH----hCCCCCCccccCc-CHHHH
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS----VMPPSRVSVIIGE-DYQLK 281 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~----l~~~~~~~~~~~~-~~~~~ 281 (394)
+.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+. +++.. +..........+. +....
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 34568999999999999999888763 32334567899876 55554432 33332 0000000000111 22233
Q ss_pred HHHHHHHccCCeEEEEEeCCC
Q 016120 282 KSILRDYLTNKKYFIVLDDVF 302 (394)
Q Consensus 282 ~~~l~~~l~~kr~LlVlDdv~ 302 (394)
...+...++.+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 344444444667799999984
No 146
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.24 E-value=0.0034 Score=52.93 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
-.+++|+|..|.|||||++.+..-. ......+|+.-.. .++-.. .++.... ..-.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~----~lS~G~~-~rv~lara 84 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE----QLSGGEK-MRLALAKL 84 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc----cCCHHHH-HHHHHHHH
Confidence 3588999999999999999998732 1223334432100 000000 0111222 22334445
Q ss_pred ccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 289 LTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 289 l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+..++-++++|+--. +......+...+... +..||++|.+.+.....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~ 133 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV 133 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence 555677899999876 455555555554432 24688888887666544
No 147
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.0041 Score=61.02 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 287 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 287 (394)
....+-|+|..|.|||.|++.+.| ....+......++++ ......+++..+... -.+..++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~-------------~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN-------------EMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh-------------hHHHHHH
Confidence 467888999999999999999999 566655533333332 233334444333221 1223333
Q ss_pred HccCCeEEEEEeCCCC--CchhHH-HHHhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCceeeCCccCCC
Q 016120 288 YLTNKKYFIVLDDVFD--NSEIWS-DLEELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKIRRDSVLFGG 354 (394)
Q Consensus 288 ~l~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l~ 354 (394)
.. .-=++++||++- ..+.|. .+...|.. ...|..||+|++.. .+...+ ...-++. ++
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~---~~Gl~~~-----I~ 242 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRL---EWGLVVE-----IE 242 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHH---hceeEEe-----eC
Confidence 33 233889999987 222332 22222221 12344899998652 344444 4567888 99
Q ss_pred CCCCChHHHHHHHHHHhC
Q 016120 355 PLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 355 ~L~~~~~~~~~Lf~~~~~ 372 (394)
|. +.+....++.+++.
T Consensus 243 ~P--d~e~r~aiL~kka~ 258 (408)
T COG0593 243 PP--DDETRLAILRKKAE 258 (408)
T ss_pred CC--CHHHHHHHHHHHHH
Confidence 99 99999999988743
No 148
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.23 E-value=0.0016 Score=56.17 Aligned_cols=117 Identities=11% Similarity=-0.017 Sum_probs=63.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC--CCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI--AYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 287 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 287 (394)
.+++|+|..|+|||||.+.++.- .......+++.-.. ..+...... ..++-.. .++ .-+...-.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~----qLS-~G~~qrl~lar 95 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY----QLS-VGERQMVEIAR 95 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE----ecC-HHHHHHHHHHH
Confidence 48899999999999999999863 22334445542111 111111110 0111000 011 12222333444
Q ss_pred HccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 288 YLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 288 ~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+-.++-+++||+--. +......+...+... .+|..||++|.+.......
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 5556678889999876 444445554444322 3366788888887654443
No 149
>PRK06921 hypothetical protein; Provisional
Probab=97.23 E-value=0.0013 Score=61.40 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccc-cCeeEEEEe
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFY-FDCLAWVRV 247 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 247 (394)
...+.++|..|+|||+||..+++ ..... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 45688999999999999999998 44433 334566653
No 150
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.23 E-value=0.0024 Score=54.15 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=29.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD 252 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (394)
++.|+|.+|+||||++..+.. .....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 367899999999999999987 3333345677887765543
No 151
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.22 E-value=0.00023 Score=62.43 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=40.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
..-+.++|..|+|||.||..+.+. ...+=..+.|++ ..+++..+-.. .. +........ .
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~------~~~L~~~l~~~----~~-----~~~~~~~~~----~ 105 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT------ASDLLDELKQS----RS-----DGSYEELLK----R 105 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE------HHHHHHHHHCC----HC-----CTTHCHHHH----H
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee------cCceecccccc----cc-----ccchhhhcC----c
Confidence 356889999999999999999873 322222345664 34444444321 11 112222222 2
Q ss_pred ccCCeEEEEEeCCCC
Q 016120 289 LTNKKYFIVLDDVFD 303 (394)
Q Consensus 289 l~~kr~LlVlDdv~~ 303 (394)
+. +-=||||||+..
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 22 335788999977
No 152
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.21 E-value=0.0036 Score=54.70 Aligned_cols=113 Identities=10% Similarity=-0.001 Sum_probs=60.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE-----------------eCCCCC--HHHHHHHHHHHhCCCCCC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR-----------------VSIAYD--FGKMLDDIIKSVMPPSRV 270 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-----------------vs~~~~--~~~i~~~i~~~l~~~~~~ 270 (394)
.+++|+|..|+|||||++.+..-.. .-...+++. +.+.+. ...+...+ ..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i----~~---- 97 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL----GR---- 97 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh----cc----
Confidence 5789999999999999999986321 112222221 111111 01111111 00
Q ss_pred ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhh
Q 016120 271 SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~ 336 (394)
.++ .-+...-.+...+-.++=+++||+... +....+.+...+....++..||++|.+......
T Consensus 98 --~LS-~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 98 --RFS-GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred --cCC-HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 011 112222334444556778899999887 444444444443322236678888888876653
No 153
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.21 E-value=0.0017 Score=59.28 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-------cccC
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-------VIIG 275 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-------~~~~ 275 (394)
+.-.++.|+|.+|+|||+||.+++........ -..++|++....++..++ .++++..+...... ...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 34578899999999999999988753222221 357889988877765544 33444433221100 0011
Q ss_pred c-CHHHHHHHHHHHcc-C-CeEEEEEeCCCC
Q 016120 276 E-DYQLKKSILRDYLT-N-KKYFIVLDDVFD 303 (394)
Q Consensus 276 ~-~~~~~~~~l~~~l~-~-kr~LlVlDdv~~ 303 (394)
. +.......+.+.+. . +.-|+|+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1 23334455555553 3 678999999864
No 154
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.21 E-value=0.0032 Score=57.38 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=61.8
Q ss_pred ccceecccHHHHHHHH---hcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLL---IEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|.+..++.|++=. ..+. ...-+-++|..|+|||++++.+.+ +....= .--|.|++..
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~--~y~~~G--LRlIev~k~~------------ 90 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLN--EYADQG--LRLIEVSKED------------ 90 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHH--HHhhcC--ceEEEECHHH------------
Confidence 8999998888886543 2222 345566899999999999999987 222211 1122322210
Q ss_pred hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD 317 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~ 317 (394)
+. +...+.+.++. ...||+|.+||+.= +...+..++..|-.
T Consensus 91 ----------L~-~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 91 ----------LG-DLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred ----------hc-cHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 00 33333333331 34799999999864 35566777766653
No 155
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.20 E-value=0.0018 Score=58.11 Aligned_cols=93 Identities=9% Similarity=0.011 Sum_probs=55.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh-CCCCCC---ccccCc-CHHHH
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV-MPPSRV---SVIIGE-DYQLK 281 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-~~~~~~---~~~~~~-~~~~~ 281 (394)
+.-.++.|+|.+|+|||+++..+... ....-..++|++... ++...+.+ ++... ...... ....+. +....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 34678999999999999999888763 333346788998865 66555443 33322 000000 000111 22333
Q ss_pred HHHHHHHccC-CeEEEEEeCCCC
Q 016120 282 KSILRDYLTN-KKYFIVLDDVFD 303 (394)
Q Consensus 282 ~~~l~~~l~~-kr~LlVlDdv~~ 303 (394)
...+.+.+.. +.-++|+|.+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHH
Confidence 5555555543 566999999864
No 156
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.19 E-value=0.0061 Score=52.70 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccc-ccc--cC---eeEEEEeCCCCC--HHHHHHHHHHHhCCCCCCccccCcCHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHV-KFY--FD---CLAWVRVSIAYD--FGKMLDDIIKSVMPPSRVSVIIGEDYQL 280 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~ 280 (394)
-.+++|+|..|.|||||++.+..-... ... ++ ...+ +.+... ...+...+.-. .. . .++....+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~--~~-~---~LS~G~~~ 98 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP--WD-D---VLSGGEQQ 98 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc--CC-C---CCCHHHHH
Confidence 348899999999999999999873211 110 11 1122 222221 12233333210 11 0 12223333
Q ss_pred HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHh
Q 016120 281 KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLA 335 (394)
Q Consensus 281 ~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~ 335 (394)
.-.+...+-.++=+++||+--. +......+...+... +..||++|.+.....
T Consensus 99 -rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 99 -RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred -HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 3334444556677889998776 444444444444332 356888888876654
No 157
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.00058 Score=60.93 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=63.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHH-HHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFG-KMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
+++.|+|+.|+||||++..+.. ....+....+++- ..+.... .-...++.+. +...+.....+.++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~--------~vg~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPIEFVHESKRSLINQR--------EVGLDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCccccccCccceeeec--------ccCCCccCHHHHHHHH
Confidence 4788999999999999998776 3333333444431 1111100 0000011000 0111223345566777
Q ss_pred ccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 289 LTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 289 l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+=.+++|++.+ .+.+....... ..|..++.|+-..++....
T Consensus 71 Lr~~pd~ii~gEird-~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~~ 115 (198)
T cd01131 71 LRQDPDVILVGEMRD-LETIRLALTAA---ETGHLVMSTLHTNSAAKTI 115 (198)
T ss_pred hcCCcCEEEEcCCCC-HHHHHHHHHHH---HcCCEEEEEecCCcHHHHH
Confidence 766677999999988 65555443332 3466688888877766544
No 158
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.17 E-value=0.00057 Score=57.20 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 159
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.15 E-value=0.0046 Score=55.64 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=32.4
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++=+++||+--. +......+...+..- ..|..||++|.+.+.....
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~ 198 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3334455677899999876 444444444444321 2466788888887665544
No 160
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.13 E-value=0.00018 Score=69.53 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=91.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCC-CHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAY-DFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
..+.+.++|.|||||||++-.+.+ +...|....|..--.+. +...+.-.+...++.... +-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 368899999999999999998877 56678766655444444 444444444444555432 3344556677
Q ss_pred HHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceeeCCccCCCCCCCCh-HHHHH
Q 016120 287 DYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLK-HEAWQ 365 (394)
Q Consensus 287 ~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~-~~~~~ 365 (394)
....++|.++|+||..+-...-..+...+-.++..-.|+.|+|..... .+...+. +++| +. +++.+
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~-----~~~L--~~~d~a~~ 149 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV------AGEVHRR-----VPSL--SLFDEAIE 149 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc------ccccccc-----CCcc--ccCCchhH
Confidence 777889999999998661111122333444455556788899875421 2456677 8888 54 47888
Q ss_pred HHHHH
Q 016120 366 FFILH 370 (394)
Q Consensus 366 Lf~~~ 370 (394)
+|...
T Consensus 150 lf~~r 154 (414)
T COG3903 150 LFVCR 154 (414)
T ss_pred HHHHH
Confidence 88665
No 161
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0027 Score=67.65 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=67.5
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.++.++.+.+.+... +.....+.++|+.|+|||++|+.+... ... ..+.++.+.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----c
Confidence 5789999999888888631 223557889999999999999999873 322 22344443322111 1
Q ss_pred HHHHhCCCCCCccccCcCHHHHHHHHHHHccC-CeEEEEEeCCCC-CchhHHHHHhhCCC
Q 016120 260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN-KKYFIVLDDVFD-NSEIWSDLEELLPD 317 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~-~~~~~~~l~~~l~~ 317 (394)
+..-++.+.. ....+. ...+.+.++. ...+|+||++.. +++.++.+...+..
T Consensus 530 ~~~LiG~~~g---yvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 530 VSRLIGAPPG---YVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred HHHHcCCCCC---cccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 2222232211 011111 1122333332 346999999998 67777777766643
No 162
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.12 E-value=0.0045 Score=54.16 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE------eCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR------VSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKK 282 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~ 282 (394)
-.+++|+|..|+|||||.+.+..-. ......+++. +.+... ++....+ .
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~---------------------LSgGq~q-r 79 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID---------------------LSGGELQ-R 79 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC---------------------CCHHHHH-H
Confidence 3589999999999999999998631 1122223221 111111 1112222 3
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...+..++-+++||+--. +......+...+... ..+..||++|.+.......
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 334445556677899999876 344444444333321 2235688888887665544
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0022 Score=64.90 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=63.7
Q ss_pred ccceecccHHHHHHHHhcC---C-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLIEG---P-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~---~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
++-|.+..+.++.+++..- + ...+=+.++|++|+|||.||+.+.+ +..-.| +.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP------ 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch------
Confidence 8889999998888877542 1 2345567999999999999999999 444333 233222
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 303 (394)
+|+....+. +.+.+.+...+.-..-++++.+|++.-
T Consensus 258 --eivSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 --EIVSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhcccCcc---------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233332222 555566666666667899999999976
No 164
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.07 E-value=0.00041 Score=56.34 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|.|.|++|+||||+|+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 165
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.07 E-value=0.0045 Score=66.37 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=84.0
Q ss_pred ccceecccHHHHHHHHhcC--------C---CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG--------P---SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--------~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.+..++++.+.+... . ...+-+.++|++|+|||+||+.+++ ....+| +.++.. .
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF-----ISINGP----E 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE-----EEEecH----H
Confidence 7899999999988876421 0 2235677999999999999999988 333332 222211 1
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------chhHHHHHhhCCCC-CCCc
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SEIWSDLEELLPDD-ENGS 322 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l~~~-~~gs 322 (394)
+ ..... ......+...+.......+.+|+||++.. . ......+...+... ..+.
T Consensus 248 i----~~~~~---------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 248 I----MSKYY---------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred H----hcccc---------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 1 11000 11223344444444456678999999864 0 01122333333221 2233
Q ss_pred EEEE-ecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 323 RVLI-TVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 323 ~Iiv-TTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
.++| ||..++ +...+.. ..-...+. ++.. +.++-.+++......
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~-----i~~P--~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIV-----IRVP--DKRARKEILKVHTRN 361 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEE-----eCCc--CHHHHHHHHHHHhcC
Confidence 4444 444432 2111100 01234566 8878 888888888766443
No 166
>PRK04296 thymidine kinase; Provisional
Probab=97.07 E-value=0.0014 Score=58.16 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=62.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDY 288 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~ 288 (394)
.++.|+|..|.||||+|..+.. +...+-..++.+. ..++.......++++++.... .... ....+...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~---~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSRE---AIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCccc---ceEeCChHHHHHHHHh-
Confidence 3667899999999999988877 3333333333332 122222223345555553221 1111 34455555555
Q ss_pred ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC
Q 016120 289 LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD 330 (394)
Q Consensus 289 l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 330 (394)
..++.-+||+|.+.- +.++...+...+ ...|..||+|.++
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~ 115 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLD 115 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecC
Confidence 333455899999976 233233333332 2457789999998
No 167
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.05 E-value=0.0055 Score=55.58 Aligned_cols=94 Identities=10% Similarity=0.082 Sum_probs=56.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCccccccc------CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC----ccccCc
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF------DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV----SVIIGE 276 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----~~~~~~ 276 (394)
+.-.++.|+|.+|+|||+||..+... ....- ..++|++....++...+. ++....+..... ..-...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 34568999999999999999988752 22222 456899887777765543 334433221100 000111
Q ss_pred -CHHHHHHHHHHHcc----CCeEEEEEeCCCC
Q 016120 277 -DYQLKKSILRDYLT----NKKYFIVLDDVFD 303 (394)
Q Consensus 277 -~~~~~~~~l~~~l~----~kr~LlVlDdv~~ 303 (394)
+.+++...+....+ .+.-|+|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 45555555555543 3556999999864
No 168
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.05 E-value=0.00098 Score=60.21 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
.+++.|+|+.|.||||+.+.+...... . +...|+.... .. ...+.++...++.........+ +...-..++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S-~f~~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQS-AFMIDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccc-hHHHHHHHHHHH
Confidence 378889999999999999988632111 1 1111221111 10 0122223333332221111111 222222333333
Q ss_pred c--cCCeEEEEEeCCCC--CchhHH----HHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 289 L--TNKKYFIVLDDVFD--NSEIWS----DLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 289 l--~~kr~LlVlDdv~~--~~~~~~----~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+ ..++-|++||.... +..+.. .+...+... ..+..+|+||.+.+++...
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2 46789999999987 332211 122233222 3345799999999888776
No 169
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.04 E-value=0.0079 Score=54.37 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=33.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +....+.+...+..-..+..||++|.+.......
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 3444556778899999877 4444455544443322245688888888766544
No 170
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.013 Score=55.83 Aligned_cols=170 Identities=17% Similarity=0.233 Sum_probs=96.9
Q ss_pred ccceecccHHHHHHHHhcC----C-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG----P-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++-|-++.+++|.+.+.-. + ..++=|.++|++|.|||-||++|+| +....| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH-----
Confidence 7888999999988877432 1 3455667999999999999999999 565555 322221
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc-CCeEEEEEeCCCC------------CchhHHHHHhhCC-----C
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD------------NSEIWSDLEELLP-----D 317 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~------------~~~~~~~l~~~l~-----~ 317 (394)
++++..-+ .-..+...+.+.-+ ..++.|.+|.++. +.+.-..+...|. +
T Consensus 220 ---ElVqKYiG----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ---ELVQKYIG----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ---HHHHHHhc----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 12222111 12234445555554 3689999999864 1112222222222 1
Q ss_pred CCCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHH-HHHHHHhCCCCCCCCcCCCchhhhh
Q 016120 318 DENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAW-QFFILHYGSMPLENYLQGEAIPTVG 389 (394)
Q Consensus 318 ~~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~-~Lf~~~~~~~~~~~~~~~~~~~~vg 389 (394)
....-|||..|-..++....=.. .-++.++ ++ | ++.+.. +.|+=+....+....-..+.+..+.
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIE-----fp-l--Pd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~ 353 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIE-----FP-L--PDEEGRAEILKIHTRKMNLADDVDLELLARLT 353 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceee-----cC-C--CCHHHHHHHHHHHhhhccCccCcCHHHHHHhc
Confidence 13346888877766554322111 2245555 65 5 555555 5565556666666655555554443
No 171
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0043 Score=53.88 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC--CCCHHHHHHHHHHHhC--CCCCCc------cc-cCcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI--AYDFGKMLDDIIKSVM--PPSRVS------VI-IGED 277 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~--~~~~~~------~~-~~~~ 277 (394)
-.+++|+|..|.|||||.+.++.- .. .....+++.-.. ....... ...++ .+.... .+ ++ .
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~--~~-~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS-~ 99 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL--YD-PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS-G 99 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC-H
Confidence 358899999999999999999873 11 223333331100 0011110 01111 000000 00 01 1
Q ss_pred HHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 278 YQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 278 ~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
-+...-.+...+..++-+++||+-.. +......+...+.....+..||++|.+......+
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 161 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDA 161 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC
Confidence 11122234445556778999999876 4444444444443222356788888887665543
No 172
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.02 E-value=0.0024 Score=59.54 Aligned_cols=159 Identities=15% Similarity=0.099 Sum_probs=96.6
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEE-EEeCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAW-VRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~i~~~i~~~l~ 265 (394)
++.|.+..+.-+.+.+... ..+....+|++|.|||+-|..+....--.+-|.+++- .|+|..-...-+-..+
T Consensus 37 e~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred hhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh-----
Confidence 8899999999999988873 4778889999999999988777653222345665542 3444432211000000
Q ss_pred CCCCCccccCcCHHHHHHHHHHHc--cCCe-EEEEEeCCCC-CchhHHHHHhhCCCCCCCcE-EEEecCChHHHhhchhc
Q 016120 266 PPSRVSVIIGEDYQLKKSILRDYL--TNKK-YFIVLDDVFD-NSEIWSDLEELLPDDENGSR-VLITVTDPDLLASLEME 340 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~-IivTTR~~~v~~~~~~~ 340 (394)
. +...+........ ..++ -.+|||++.. ..+.|..+...+-+-...++ |+||+--..+...+ .
T Consensus 110 ---------k-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi--~ 177 (346)
T KOG0989|consen 110 ---------K-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL--V 177 (346)
T ss_pred ---------c-CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH--H
Confidence 0 2222222221111 1134 3788999998 77899999888766555566 44554444333333 1
Q ss_pred CCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 341 NGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 341 ~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+...-++ .++| .+++...-++..+
T Consensus 178 SRC~Kfr-----Fk~L--~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 178 SRCQKFR-----FKKL--KDEDIVDRLEKIA 201 (346)
T ss_pred hhHHHhc-----CCCc--chHHHHHHHHHHH
Confidence 2344567 8899 8888877777664
No 173
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.02 E-value=0.0068 Score=56.01 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=66.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccc-cc--ccC--eeEEEEeC----CCCCHHHHH--------------HHHHHHhCC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHV-KF--YFD--CLAWVRVS----IAYDFGKML--------------DDIIKSVMP 266 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~--~~~wv~vs----~~~~~~~i~--------------~~i~~~l~~ 266 (394)
.+++|+|..|+|||||++.+.....- .. .++ .+.++.-. ...++.+.+ .++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 58999999999999999999864211 01 111 11222111 011222221 223333333
Q ss_pred CCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 267 PSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 267 ~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.......... +..+ ..-.+...|..++=+++||.--. +...-..+...+..- ..|..||++|.+...+...
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 2111111222 2222 22334455666778899999876 444444444443322 2356789999987766654
No 174
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0045 Score=53.85 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccC----------cCH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIG----------EDY 278 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~----------~~~ 278 (394)
-.+++|+|..|.|||||.+.++... ......+++.-..-.... ..+-..++-......-+. +.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3588999999999999999998732 122333333110000000 000000100000000000 011
Q ss_pred HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 279 QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 279 ~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...-.+...+..++=++++|+--. +......+...+... ..|..||++|.+.......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 1222345555666788899999877 444444444444322 2367799999988766644
No 175
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.01 E-value=0.00075 Score=56.48 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=60.1
Q ss_pred ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-ccccCeeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016120 189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPP 267 (394)
Q Consensus 189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 267 (394)
+|.-..+.++.+.+..-.....-|.|.|..|+||+++|+.++..... ...|...- ... .. .+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~-~~-----~~~l~~---- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CAS-LP-----AELLEQ---- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHC-TC-----HHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhh-Cc-----HHHHHH----
Confidence 35555566666666443223456679999999999999999874222 12222100 000 00 111111
Q ss_pred CCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC-CCCcEEEEecCCh
Q 016120 268 SRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD-ENGSRVLITVTDP 331 (394)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~ 331 (394)
.+.--|+|+|+.. +......+...+... ....|+|.||+.+
T Consensus 68 -----------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 -----------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1344578999988 566666676666533 5678999998854
No 176
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0081 Score=61.41 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=90.9
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++-|.++.+.+|.+.+.-. -...+-|..+|++|+|||++|+.+.+ +-+-+| +.++.. +
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp----E 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP----E 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----H
Confidence 5666777666666554322 13566777999999999999999999 555555 222211 1
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C-----c----hhHHHHHhhCCCCCCCcE
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N-----S----EIWSDLEELLPDDENGSR 323 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~-----~----~~~~~l~~~l~~~~~gs~ 323 (394)
+ +...-+. +...+.+...+.-+--++++.||.++. . . ..+..|..-+........
T Consensus 504 L----~sk~vGe---------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 504 L----FSKYVGE---------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred H----HHHhcCc---------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 1 1111111 333333444443344568999998865 0 0 122333333333233334
Q ss_pred EEE---ecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCCCCcCCCch
Q 016120 324 VLI---TVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAI 385 (394)
Q Consensus 324 Iiv---TTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~~~~~~~~~ 385 (394)
|+| |.|. +........ ..+.++. +++- +.+-..++|+.++...+..+...++.|
T Consensus 571 V~ViAATNRp-d~ID~ALlRPGRlD~iiy-----VplP--D~~aR~~Ilk~~~kkmp~~~~vdl~~L 629 (693)
T KOG0730|consen 571 VLVIAATNRP-DMIDPALLRPGRLDRIIY-----VPLP--DLEARLEILKQCAKKMPFSEDVDLEEL 629 (693)
T ss_pred EEEEeccCCh-hhcCHHHcCCcccceeEe-----ecCc--cHHHHHHHHHHHHhcCCCCccccHHHH
Confidence 444 4443 333332222 2356666 7666 666777999988877676665444333
No 177
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0097 Score=53.39 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++-+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~ 194 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL 194 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 4444555667899999876 444444444444321 2366799999988765544
No 178
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.0014 Score=57.00 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 179
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.98 E-value=0.0026 Score=59.25 Aligned_cols=92 Identities=13% Similarity=0.244 Sum_probs=55.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccccccc-CeeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--cccCc------CHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYF-DCLAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS--VIIGE------DYQ 279 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~--~~~~~------~~~ 279 (394)
..++|.|.+|+|||||++.+++ .++.+| +.++++-+++... +.++..++...-......- ...++ -..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999998 555455 4456667766554 4455555543211110000 00111 111
Q ss_pred HHHHHHHHHc--c-CCeEEEEEeCCCC
Q 016120 280 LKKSILRDYL--T-NKKYFIVLDDVFD 303 (394)
Q Consensus 280 ~~~~~l~~~l--~-~kr~LlVlDdv~~ 303 (394)
...-.+.+++ + ++..|+++||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 2233455565 3 8999999999854
No 180
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.97 E-value=0.011 Score=53.19 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=65.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccc-c--ccC-----------eeEEEEeCC----CCCHH---------------H
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVK-F--YFD-----------CLAWVRVSI----AYDFG---------------K 255 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~-----------~~~wv~vs~----~~~~~---------------~ 255 (394)
-.+++|+|..|.|||||.+.+....... . .|+ .+.++.-.. ..++. .
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 116 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ 116 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHH
Confidence 3478999999999999999998632110 0 011 122332111 01111 1
Q ss_pred HHHHHHHHhCCCCCCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTD 330 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~ 330 (394)
...+++..++........... +. +...-.+...+-.++-+++||+--+ +....+.+...+.. ...|..||++|.+
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 117 MPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 223344444332111111122 11 2222333444445666899999876 44444444444432 1335678889998
Q ss_pred hHHHhhc
Q 016120 331 PDLLASL 337 (394)
Q Consensus 331 ~~v~~~~ 337 (394)
.......
T Consensus 197 ~~~~~~~ 203 (214)
T PRK13543 197 AYAAPPV 203 (214)
T ss_pred hhhhhhh
Confidence 8766655
No 181
>PRK06696 uridine kinase; Validated
Probab=96.97 E-value=0.00089 Score=60.91 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=34.4
Q ss_pred eecccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 190 EFERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 190 Gr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.+.+++|.+.+... ..+..+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3566778888888652 34678999999999999999999987
No 182
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.96 E-value=0.0091 Score=53.60 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=32.5
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++-+++||+--+ +......+...+... ..|..||++|.+.......
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3344455667899999876 444444444444321 2366788888887766554
No 183
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.96 E-value=0.014 Score=55.24 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=95.5
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcC-cccccccCeeEEEEeCCCCCH-HHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNN-DHVKFYFDCLAWVRVSIAYDF-GKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv~vs~~~~~-~~i~~~i~~ 262 (394)
.++|..++..++-.++... .+....+.|+|+.|.|||+|.-....+ +++.++| .-|........ +-.++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHH
Confidence 7899888888888887543 123556779999999999988777765 2344444 33333333322 223444444
Q ss_pred HhCCCCCCccccCc-CHHHHHHHHHHHcc------CCeEEEEEeCCCC--Cch----hHHHHHhhCCCCCCCcEEEEecC
Q 016120 263 SVMPPSRVSVIIGE-DYQLKKSILRDYLT------NKKYFIVLDDVFD--NSE----IWSDLEELLPDDENGSRVLITVT 329 (394)
Q Consensus 263 ~l~~~~~~~~~~~~-~~~~~~~~l~~~l~------~kr~LlVlDdv~~--~~~----~~~~l~~~l~~~~~gs~IivTTR 329 (394)
++....... .... +..+....+...|+ +-+...|+|..+- ... .++-+-..-....+-|-|-+|||
T Consensus 102 ql~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 102 QLALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 443222110 0011 33333444444443 2368888988765 111 11111111123456677888999
Q ss_pred ChH-------HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 330 DPD-------LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 330 ~~~-------v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
-.. |-... +...++- ++++ +-++...++++..
T Consensus 181 ld~lE~LEKRVKSRF---shr~I~m-----~~~~--~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRF---SHRVIFM-----LPSL--PLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhc---ccceeec-----cCCC--ChHHHHHHHHHHh
Confidence 742 22222 2333555 7778 8999999998874
No 184
>PRK07667 uridine kinase; Provisional
Probab=96.95 E-value=0.0011 Score=58.79 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+.|.+.+....++..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777777666778999999999999999999987
No 185
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.95 E-value=0.014 Score=52.26 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++=+++||+--. +....+.+...+... ..|..||++|.+......+
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 3444555677999999876 444444554444322 3466688888887766544
No 186
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.95 E-value=0.014 Score=52.69 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=33.0
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+++||+--. +......+...+... ..|..||++|.+.+.....
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 204 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY 204 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 34445556677899999876 444444444443321 2356688888887766544
No 187
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.94 E-value=0.0086 Score=54.32 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=33.2
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-..+-+++||+--. +....+.+...+... ..|..||++|.+.+.....
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~ 190 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL 190 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 4444555678899999876 444444444444321 2366799999998766544
No 188
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0048 Score=53.95 Aligned_cols=125 Identities=18% Similarity=0.100 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE---EeCCCC-CHHHHHHHHHHHhCCCCCCc------ccc---C
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV---RVSIAY-DFGKMLDDIIKSVMPPSRVS------VII---G 275 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~-~~~~i~~~i~~~l~~~~~~~------~~~---~ 275 (394)
-.+++|+|..|.|||||++.+.... ......+.+ .++... ........+ ..+....... ... -
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRI-GMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcE-EEEecCCccCCCCCHHHheeecC
Confidence 3588999999999999999998631 122333333 111100 001110000 0000000000 000 0
Q ss_pred cCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 276 EDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 276 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+.-+...-.+...+..++=+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 167 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL 167 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 0112222334445556777899999876 444445554444322 2256788888887666544
No 189
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.93 E-value=0.00082 Score=64.82 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=40.1
Q ss_pred ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+++|.++.++++++++... +.+.+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999763 235688999999999999999999874
No 190
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.93 E-value=0.008 Score=60.94 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=81.8
Q ss_pred ccceecccHHHHHHHHhc--------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHH
Q 016120 187 DINEFERGREELFDLLIE--------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLD 258 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~--------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 258 (394)
++.|.+..++.+.+.... +-...+-+.++|++|+|||.+|+.+.+ +..-.| +-+..+ .
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~------~--- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVG------K--- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhH------H---
Confidence 777877666555442211 112345678999999999999999998 333222 111111 1
Q ss_pred HHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C------ch----hHHHHHhhCCCCCCCcEEE
Q 016120 259 DIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N------SE----IWSDLEELLPDDENGSRVL 325 (394)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~------~~----~~~~l~~~l~~~~~gs~Ii 325 (394)
+.... ...+...+.+.+...-...+++|.+|++.. + .. ....+...+.....+--||
T Consensus 295 -l~~~~---------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 -LFGGI---------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred -hcccc---------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 11110 011223333333333345789999999974 0 00 1112222232223333455
Q ss_pred EecCChHH-Hhhch-hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 326 ITVTDPDL-LASLE-MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 326 vTTR~~~v-~~~~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
.||.+.+- -..+- .+.-+..+. ++.- +.++-.++|..++..
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~-----v~lP--~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFF-----LDLP--SLEEREKIFKIHLQK 407 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEE-----eCCc--CHHHHHHHHHHHHhh
Confidence 57766532 11110 012356677 8888 888888999887543
No 191
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.93 E-value=0.0058 Score=54.50 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~ 336 (394)
.+...+-.++=+++||+--. +......+...+..- ..|..||++|.+......
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 34455556777899999876 444444444444322 236678889988876664
No 192
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0057 Score=63.04 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCC-------CCcccccc------CCCCCCCc-ccceecccHHHHHHHHhcC-
Q 016120 141 LLVELHTKIIDIRNRMQQLPPGDNGFDISD-------KCNEIIHL------LSEGQPRL-DINEFERGREELFDLLIEG- 205 (394)
Q Consensus 141 ~r~~i~~~i~~i~~~l~~l~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~-~~~Gr~~~~~~i~~~L~~~- 205 (394)
....+.+.+.+-..+++.+......|.+.- +-+....+ .+...... +=+|.++-+++|++.+--.
T Consensus 352 ~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~k 431 (906)
T KOG2004|consen 352 MPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGK 431 (906)
T ss_pred CcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHh
Confidence 334455677777788888888888886543 11110000 00000011 6789999999999998543
Q ss_pred ---CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHH
Q 016120 206 ---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKK 282 (394)
Q Consensus 206 ---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~ 282 (394)
+.+-++++.+|++|||||.+|+.|+. .....|- -++|+.-.|..+| .+.... .+..-...+.
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeI--------kGHRRT--YVGAMPGkiI 496 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEI--------KGHRRT--YVGAMPGKII 496 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhh--------ccccee--eeccCChHHH
Confidence 34567999999999999999999987 4444442 2345554444332 111110 0111223333
Q ss_pred HHHHHHccCCeEEEEEeCCCC
Q 016120 283 SILRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~ 303 (394)
+.|+.. +...-|+.||.|+.
T Consensus 497 q~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 497 QCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred HHHHhh-CCCCceEEeehhhh
Confidence 333332 23466888898875
No 193
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.93 E-value=0.015 Score=52.82 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=36.7
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhchhcCCCceee
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
+...+-..+-+++||+--. +....+.+...+..- ..|..||++|.+...+..+ .++++.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~----~d~i~~ 221 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV----ADRVMD 221 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh----cceeEe
Confidence 3344445567899999876 444445555444321 2366789999988777655 245665
No 194
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.92 E-value=0.0019 Score=56.28 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV 245 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 245 (394)
...+|.++|+.|+||||+|+.+++ ....++...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356899999999999999999998 555555555555
No 195
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.92 E-value=0.016 Score=51.65 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=72.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe-------------------CCCCC-----------------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV-------------------SIAYD----------------- 252 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-------------------s~~~~----------------- 252 (394)
-.+++|+|++|+|||||.+.+..=+.. =+..+|+.- -++|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 358999999999999999998652211 123344321 11221
Q ss_pred --------HHHHHHHHHHHhCCCCCCccccCc--CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CC
Q 016120 253 --------FGKMLDDIIKSVMPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DE 319 (394)
Q Consensus 253 --------~~~i~~~i~~~l~~~~~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~ 319 (394)
..+...++++..+........... .-++..-.+.+.|.-++-++.+|..-+ +++.-.++...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 233445555655554332111111 233334456666777788899999987 66655555443332 23
Q ss_pred CCcEEEEecCChHHHhhc
Q 016120 320 NGSRVLITVTDPDLLASL 337 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~~ 337 (394)
.|-..|+.|..-..|..+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 465666677776666666
No 196
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0027 Score=57.10 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=32.0
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++=+++||+--. +...-+.+...+.....+..||++|.+.......
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~ 195 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESL 195 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence 34445556778899999766 3433344443333222235688888887766544
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.91 E-value=0.0055 Score=58.51 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=31.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADT 229 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v 229 (394)
.+.+|..+..--+++|+.++ ...|.+.|.+|.|||.||-..
T Consensus 225 Gi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred ccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHH
Confidence 34556666666778887765 899999999999999887544
No 198
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.91 E-value=0.006 Score=55.12 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCC-CCCccccCc-CHHH---H
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPP-SRVSVIIGE-DYQL---K 281 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~-~~~~~~~~~-~~~~---~ 281 (394)
+.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+. .-+.+++...... .....-.+. +..+ .
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 34578889999999999999988763 322234567887655543 3333443321000 000000111 2222 2
Q ss_pred HHHHHHHccCCeEEEEEeCCCC
Q 016120 282 KSILRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 282 ~~~l~~~l~~kr~LlVlDdv~~ 303 (394)
...+...+..+.-++|+|-+..
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 93 IQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred HHHHHHHHhcCCcEEEEechHH
Confidence 3344444554567999999864
No 199
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.013 Score=54.53 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=32.7
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+|+||+--. +...-..+...+... ..|..||++|.+.+.....
T Consensus 139 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~ 195 (255)
T PRK11248 139 IARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFM 195 (255)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3444455677999999876 444444444444321 2366788888887766554
No 200
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0061 Score=56.17 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=74.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-----CCCHHHHHHHHHHHhCCCCCCc-cccCc-CHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-----AYDFGKMLDDIIKSVMPPSRVS-VIIGE-DYQLK 281 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~~~~~-~~~~~-~~~~~ 281 (394)
-.++++||.+|+||||+++.+.. ....-...++..-.+ .....+-..+++...+...... ..-.+ +-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45899999999999999999986 222223333332111 2223445667777776543211 11122 33333
Q ss_pred H-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhch
Q 016120 282 K-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASLE 338 (394)
Q Consensus 282 ~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~~ 338 (394)
+ -.+...|.-++-|+|.|.--+ +...-.++...+.+ ...|-..+..|-+-.|+..++
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 3 334555778899999999766 23222333333322 234566788888888888873
No 201
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.90 E-value=0.014 Score=54.24 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccc-cc--ccC---------eeEEEEeCCC----CCH------------HHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHV-KF--YFD---------CLAWVRVSIA----YDF------------GKMLDDI 260 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---------~~~wv~vs~~----~~~------------~~i~~~i 260 (394)
-.+++|+|..|+|||||.+.+..-... .. .|+ ...|+.-... .++ ..-..++
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 117 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA 117 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH
Confidence 358999999999999999999753110 00 011 1223311110 111 1122344
Q ss_pred HHHhCCCCCCccccCc---CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHH
Q 016120 261 IKSVMPPSRVSVIIGE---DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDL 333 (394)
Q Consensus 261 ~~~l~~~~~~~~~~~~---~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v 333 (394)
++.++........... ...+.. .+...+-..+=+++||.--. +...-..+...+.. ...|..||++|.+...
T Consensus 118 l~~~gl~~~~~~~~~~LSgGqkqrl-~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 118 LAAVGLADRANEWPAALSGGQKQRV-ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHcCChhHhcCChhhCCHHHHHHH-HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4554443211111122 222222 33334445667889999876 44444444444432 1235668888888765
Q ss_pred Hhhc
Q 016120 334 LASL 337 (394)
Q Consensus 334 ~~~~ 337 (394)
....
T Consensus 197 ~~~~ 200 (257)
T PRK11247 197 AVAM 200 (257)
T ss_pred HHHh
Confidence 5443
No 202
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.90 E-value=0.0065 Score=52.83 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=59.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC--CCCHHHHHHHHHHHhCCCCCCc-----cc-cCcCHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI--AYDFGKMLDDIIKSVMPPSRVS-----VI-IGEDYQLK 281 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~-----~~-~~~~~~~~ 281 (394)
.+++|+|..|.|||||.+.+..-. ......+++.-.. ..........+. .+....... .+ ++....+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence 488999999999999999998631 1222333321100 111111111100 000000000 00 01122222
Q ss_pred HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120 282 KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 282 ~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~ 336 (394)
-.+...+..++=+++||+-.. +......+...+... ..|..||++|.+......
T Consensus 105 -v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 105 -LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred -HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 334444555666889999876 444444444443321 236678888888876653
No 203
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.89 E-value=0.022 Score=53.23 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=72.8
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE---EeCCCCCHHHHHHHHHHHhCCCCCC
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV---RVSIAYDFGKMLDDIIKSVMPPSRV 270 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~i~~~i~~~l~~~~~~ 270 (394)
..+.++..|... .....++|+|..|+|||||.+.+... +. .....+++ .+...... .++......-...
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhH----HHHHHHhcccccc
Confidence 456666666643 23578899999999999999999873 22 22333443 11111011 2333222211110
Q ss_pred --ccccCc-CHHHHHHHHHHHc-cCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 271 --SVIIGE-DYQLKKSILRDYL-TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 271 --~~~~~~-~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
....+. +...-..-+...+ ...+=++++|.+.. .+.+..+...+. .|..||+||.+.++....
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGRDVEDLY 235 (270)
T ss_pred cccccccccccchHHHHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechhHHHHHH
Confidence 000111 1111122233333 24788999999988 766666666552 477899999987765543
No 204
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.88 E-value=0.0084 Score=55.57 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=63.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccc-ccc--cC---eeEEEEeCCCC------CHH-----------HHHHHHHHHhC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHV-KFY--FD---CLAWVRVSIAY------DFG-----------KMLDDIIKSVM 265 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---~~~wv~vs~~~------~~~-----------~i~~~i~~~l~ 265 (394)
-.+++|+|..|.|||||++.++.-... ... ++ ...++.-...+ +.. .-...+++.++
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 109 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ 109 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcC
Confidence 358999999999999999999863111 000 11 12222111000 000 11233344444
Q ss_pred CCCCCccccCc-CHH-HHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 266 PPSRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 266 ~~~~~~~~~~~-~~~-~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
........... +.. ...-.+...+-.++=+++||+--. +...-..+...+..- ..|..||++|.+.+.....
T Consensus 110 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~ 187 (251)
T PRK09544 110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK 187 (251)
T ss_pred ChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 32211111222 222 222233444555677999999877 444444444444321 2256688888887665443
No 205
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.01 Score=53.32 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=33.0
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...|..++-+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 197 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALAL 197 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence 4444556677999999876 444445555444332 2366788888887655444
No 206
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.87 E-value=0.0069 Score=58.41 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=36.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 678988888888888765433344567899999999999999986
No 207
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.013 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35889999999999999999975
No 208
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.85 E-value=0.014 Score=52.24 Aligned_cols=53 Identities=26% Similarity=0.333 Sum_probs=33.4
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-..+-+++||+--. +......+...+... ..|..||++|.+......+
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC
Confidence 3444555677899999876 454445554444321 2355688888887766666
No 209
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.85 E-value=0.015 Score=52.59 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=39.7
Q ss_pred HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhchhcCCCceee
Q 016120 279 QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 279 ~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
++..-.+.+.|-..+-+|+-|+=-. +...=+.+...+... ..|..||+.|.++.+|..+ ++++.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~-----dr~i~ 214 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA-----DRVIE 214 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC-----CEEEE
Confidence 3334455566667777788887543 233223444444322 4477899999999999987 45555
No 210
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.84 E-value=0.0047 Score=53.59 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=32.0
Q ss_pred cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
++|....+.++++.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467777778887777543223345569999999999999999983
No 211
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.84 E-value=0.012 Score=53.07 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++|+|..|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999975
No 212
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0072 Score=60.26 Aligned_cols=129 Identities=18% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
.+...+.+.|++|+|||+||..+.. ...|+.+--++. +.+ ++. +...-...++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSp------e~m-------iG~----------sEsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISP------EDM-------IGL----------SESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeCh------HHc-------cCc----------cHHHHHHHHH
Confidence 3566778899999999999999975 345664333221 110 011 2222333333
Q ss_pred HH----ccCCeEEEEEeCCCCCchhH------------HHHHhhCCCC-CCCcEEEE--ecCChHHHhhchh-cCCCcee
Q 016120 287 DY----LTNKKYFIVLDDVFDNSEIW------------SDLEELLPDD-ENGSRVLI--TVTDPDLLASLEM-ENGEKIR 346 (394)
Q Consensus 287 ~~----l~~kr~LlVlDdv~~~~~~~------------~~l~~~l~~~-~~gs~Iiv--TTR~~~v~~~~~~-~~~~~~~ 346 (394)
.. -+..--.||+||+.. .-+| ..|...|... ..|-|.+| ||....|...|.. ..-...|
T Consensus 589 k~F~DAYkS~lsiivvDdiEr-LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i 667 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIER-LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTI 667 (744)
T ss_pred HHHHHhhcCcceEEEEcchhh-hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhee
Confidence 33 345567899999976 3333 2333344333 34445444 7777788887743 2235667
Q ss_pred eCCccCCCCCCCCh-HHHHHHHHHH
Q 016120 347 RDSVLFGGPLIRLK-HEAWQFFILH 370 (394)
Q Consensus 347 ~~~~~~l~~L~~~~-~~~~~Lf~~~ 370 (394)
+ ++-+ +. ++..+.++..
T Consensus 668 ~-----Vpnl--~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 668 H-----VPNL--TTGEQLLEVLEEL 685 (744)
T ss_pred e-----cCcc--CchHHHHHHHHHc
Confidence 7 8888 65 7777777765
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.035 Score=53.33 Aligned_cols=154 Identities=10% Similarity=0.073 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc-----cc-ccccCe--eEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND-----HV-KFYFDC--LAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-----~~-~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
...+.+.+..+ .-.....+.|+.|+||+++|+.+..-. .. ..+-.| +-++..+..+|+..+ .+
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EP 81 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------cc
Confidence 34455555443 234567789999999999998886421 10 000011 011222222222111 00
Q ss_pred CCCCccccCcCHHHHHH---HHHHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhc
Q 016120 267 PSRVSVIIGEDYQLKKS---ILRDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEME 340 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~l~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~ 340 (394)
... ..+ ..++..+ .+...- .+++=++|+|++.. +....+.+...+-.-..++.+|++|.++ .+.... .
T Consensus 82 ~~~--~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI--~ 155 (325)
T PRK06871 82 IDN--KDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI--Y 155 (325)
T ss_pred ccC--CCC--CHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH--H
Confidence 000 001 3333333 322221 35666888999998 6777888888887767777777777765 555444 2
Q ss_pred CCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 341 NGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 341 ~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
+....+. +.++ +.++..+.+.+.
T Consensus 156 SRC~~~~-----~~~~--~~~~~~~~L~~~ 178 (325)
T PRK06871 156 SRCQTWL-----IHPP--EEQQALDWLQAQ 178 (325)
T ss_pred hhceEEe-----CCCC--CHHHHHHHHHHH
Confidence 4567888 9999 999998877765
No 214
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.83 E-value=0.013 Score=54.37 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|.|||||.+.++.
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~G 48 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 215
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.017 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.+++|+|..|+|||||++.++.-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999763
No 216
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.83 E-value=0.0029 Score=60.48 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=56.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHH
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSIL 285 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l 285 (394)
+.-+++-|+|++|+||||||.++.. .....-..++|++....++.. .++.++.....-...+. +.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3456888999999999999988776 333334567788777666553 34555433211001111 455556666
Q ss_pred HHHcc-CCeEEEEEeCCCC
Q 016120 286 RDYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 286 ~~~l~-~kr~LlVlDdv~~ 303 (394)
...++ +..-++|+|.|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 4567999999864
No 217
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0042 Score=55.83 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=33.3
Q ss_pred HHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 286 RDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 286 ~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
...+-.++-+++||+--. +....+.+...+..- ..|..||++|.+.......
T Consensus 140 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 195 (211)
T cd03298 140 ARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL 195 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhh
Confidence 334445677899999876 455555555555432 2366788888888766554
No 218
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.82 E-value=0.012 Score=51.57 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=33.4
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +....+.+...+..- ..|..||++|.+.......
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 170 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGL 170 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 4445556778899999876 455555555444322 2366789999887555444
No 219
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.011 Score=53.68 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhch
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASLE 338 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~~ 338 (394)
.+.+.|.-++=+||+|..-+ |...-..+...|.. ...|-.+|+.|.+-.++..+|
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 34455666788899999866 32222333333321 234556888899988888775
No 220
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.81 E-value=0.016 Score=53.12 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++-+++||+--. +....+.+...+... ..|..||++|.+.+.+..+
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 199 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEAD 199 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhC
Confidence 34445556778899999876 454445555544432 2366788888887665533
No 221
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0065 Score=55.86 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||..-. +......+...+... ..|..||++|.+.......
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 207 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKT 207 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3444455677999999887 555555555554432 2366788888887766544
No 222
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.81 E-value=0.011 Score=57.97 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=33.2
Q ss_pred ecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcC
Q 016120 191 FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNN 232 (394)
Q Consensus 191 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~ 232 (394)
|.+..++|..||.+.. -..|.|.|+-|+||+.|+ .++..+
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~ 41 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKD 41 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhC
Confidence 5677899999998864 468889999999999999 777664
No 223
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.80 E-value=0.014 Score=52.04 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=33.3
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++-+++||+--. +...-+.+...+.. ...|..||+||.+......+
T Consensus 137 ~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 34444555677899999876 34333444444432 13467799999987665554
No 224
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.80 E-value=0.013 Score=55.83 Aligned_cols=53 Identities=8% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +...-+.+...+..-..+..||+||.+.+.+...
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~ 198 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAI 198 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHh
Confidence 4445566778899999876 4433333333332222256799999988755444
No 225
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.80 E-value=0.013 Score=56.47 Aligned_cols=45 Identities=13% Similarity=-0.005 Sum_probs=33.3
Q ss_pred cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 367666777777766544333455679999999999999999863
No 226
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.01 Score=54.10 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=32.5
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +...-..+...+..- ..|..||++|.+.+.....
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~ 207 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRI 207 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3344455667899999876 444444444444322 2367789999888765544
No 227
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.80 E-value=0.0097 Score=53.30 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=33.3
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++-+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 192 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV 192 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 4444555667899999876 444445554444322 2466789999988766544
No 228
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.013 Score=54.94 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=33.8
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~ 336 (394)
-.+...|..++=+|+||+... +......+...+... ..|..||++|.+.+.+..
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 344455666788999999877 454444554444322 236678888888765543
No 229
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.012 Score=55.23 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=32.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++=+++||+-.. +......+...+..- ..|..||++|.+.+.....
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~ 208 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF 208 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 3444445677899999877 454445554444321 2366688888887654444
No 230
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.78 E-value=0.015 Score=59.97 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=37.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 8899999999988887654333445679999999999999999874
No 231
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.78 E-value=0.0051 Score=63.29 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=35.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..+..+...+.... ..-+.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 89999999999888776543 34557899999999999999976
No 232
>PRK13695 putative NTPase; Provisional
Probab=96.78 E-value=0.0019 Score=56.32 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.+.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 233
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.78 E-value=0.012 Score=62.75 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=71.6
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|....+..+.+.+..-.....-|.|+|..|+|||++|+.+++.... .. ...+.++...- ....+-..++....+
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~-~~~~~~~~lfg~~~~ 453 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAM-PAGLLESDLFGHERG 453 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccC-ChhHhhhhhcCcccc
Confidence 7899998888887777543233446779999999999999999874211 11 12233433322 111111122111110
Q ss_pred CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 016120 267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE-----------NGSRVLITVTDP 331 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 331 (394)
. +..........+ -....=.|+||||.. .......|...+..+. .+.|||.||...
T Consensus 454 ~------~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 454 A------FTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred c------ccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 0 000001111111 112235699999998 5666667766654321 345888887653
No 234
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.77 E-value=0.016 Score=52.13 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=32.3
Q ss_pred HHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 286 RDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 286 ~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
...+..++-+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~ 195 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI 195 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence 334445677999999877 455445555444432 2366788888887655443
No 235
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.77 E-value=0.014 Score=53.03 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++-++++|+--. +......+...+... ..|..||++|.+.+.....
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~ 179 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMAT 179 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 44555566778899999876 444444444444321 2466788888887654443
No 236
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.018 Score=52.57 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +...-..+...+..- ..|..||++|.+.+.+...
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~ 203 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAI 203 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence 3444555677899999876 444444454444332 2366788888887765544
No 237
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.016 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
. .+++|+|..|+|||||++.+..
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhC
Confidence 5 8999999999999999999975
No 238
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.76 E-value=0.0013 Score=54.79 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=47.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccC
Q 016120 212 VAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN 291 (394)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 291 (394)
|.++|++|+|||+||+.++. .... ...-+.++...+..+++...--. .... .+ ....+...+ .
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~----~~--~~~~l~~a~-----~ 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQF----EF--KDGPLVRAM-----R 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTTT----CE--EE-CCCTTH-----H
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-cccc----cc--ccccccccc-----c
Confidence 56899999999999999987 3311 12335666766666554322211 0000 00 001000000 1
Q ss_pred CeEEEEEeCCCC-CchhHHHHHhhC
Q 016120 292 KKYFIVLDDVFD-NSEIWSDLEELL 315 (394)
Q Consensus 292 kr~LlVlDdv~~-~~~~~~~l~~~l 315 (394)
+..++|||++.. +...+..+...+
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHH
T ss_pred ceeEEEECCcccCCHHHHHHHHHHH
Confidence 789999999986 355555555544
No 239
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.017 Score=53.15 Aligned_cols=126 Identities=21% Similarity=0.239 Sum_probs=73.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCc-----ccc------ccc---CeeEEEEeCCCCC------H----------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNND-----HVK------FYF---DCLAWVRVSIAYD------F---------------- 253 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~-----~~~------~~F---~~~~wv~vs~~~~------~---------------- 253 (394)
..++|+|+.|.|||||.+.+..-. ++. ..+ ..+.||+-...++ +
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 689999999999999999997611 111 001 1344552211111 1
Q ss_pred ------HHHHHHHHHHhCCCCCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--Cchh---HHHHHhhCCCCCC
Q 016120 254 ------GKMLDDIIKSVMPPSRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEI---WSDLEELLPDDEN 320 (394)
Q Consensus 254 ------~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~---~~~l~~~l~~~~~ 320 (394)
.+...+.++..+...-....+.. +-.+.+ -.+.+.|..++=||+||.=-. |... .-++...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-e- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-E- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-
Confidence 24455556666555433344555 444444 455666888999999998655 2222 2333333332 2
Q ss_pred CcEEEEecCChHHHhhc
Q 016120 321 GSRVLITVTDPDLLASL 337 (394)
Q Consensus 321 gs~IivTTR~~~v~~~~ 337 (394)
|+.||++|-+.+.....
T Consensus 189 g~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 189 GKTVLMVTHDLGLVMAY 205 (254)
T ss_pred CCEEEEEeCCcHHhHhh
Confidence 88899999987544433
No 240
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.76 E-value=0.02 Score=52.18 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhc
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+..+++|.|++|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998886
No 241
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0066 Score=51.81 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=63.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC--CCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA--YDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 287 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 287 (394)
.+++|+|..|.|||||.+.+... . ......+++.-... ...... ...++-.. .++..... .-.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~----qlS~G~~~-r~~l~~ 93 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP----QLSGGQRQ-RVALAR 93 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHHH----HhceEEEe----eCCHHHHH-HHHHHH
Confidence 58899999999999999999873 2 23344455422111 111111 11111000 01112222 233445
Q ss_pred HccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 288 YLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 288 ~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-++++|+.-. +......+...+... .++..++++|.+.......
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 5555678899999876 444444444444321 2256788888887766655
No 242
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.75 E-value=0.0034 Score=60.03 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=56.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHH
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSIL 285 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l 285 (394)
+.-+++-|+|++|+||||||.+++. .....-..++|++....+++. .+..++.....---... +.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 3456888999999999999998876 333334567899877766653 34444432111000111 455566666
Q ss_pred HHHcc-CCeEEEEEeCCCC
Q 016120 286 RDYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 286 ~~~l~-~kr~LlVlDdv~~ 303 (394)
...++ +..-++|+|.|-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 66554 4567999999864
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.036 Score=53.08 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=49.7
Q ss_pred CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120 291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI 368 (394)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~ 368 (394)
+++-++|+|++.. +...-+.|...+-.-..++.+|++|.+ ..+...+ .+....+. +.++ +.+++...+.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI--rSRCq~i~-----~~~~--~~~~~~~~L~ 182 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI--RSRCQRLE-----FKLP--PAHEALAWLL 182 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH--HhhheEee-----CCCc--CHHHHHHHHH
Confidence 4567899999988 566666777776655567777777665 3455444 34567778 9999 9888887776
Q ss_pred HH
Q 016120 369 LH 370 (394)
Q Consensus 369 ~~ 370 (394)
+.
T Consensus 183 ~~ 184 (319)
T PRK08769 183 AQ 184 (319)
T ss_pred Hc
Confidence 53
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0057 Score=56.79 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 287 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 287 (394)
+..-+.++|.+|+|||.||..+.+. ....--.+.+++ ..+++.++....... .....+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~~------------~~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDEG------------RLEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcC------------chHHHHHH
Confidence 4567789999999999999999994 433222334553 456666666554431 11222222
Q ss_pred HccCCeEEEEEeCCCC
Q 016120 288 YLTNKKYFIVLDDVFD 303 (394)
Q Consensus 288 ~l~~kr~LlVlDdv~~ 303 (394)
.+. +-=||||||+-.
T Consensus 164 ~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 164 ELK-KVDLLIIDDIGY 178 (254)
T ss_pred Hhh-cCCEEEEecccC
Confidence 221 234899999976
No 245
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.75 E-value=0.009 Score=57.76 Aligned_cols=96 Identities=8% Similarity=0.063 Sum_probs=58.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc----cccCc-C
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS----VIIGE-D 277 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~----~~~~~-~ 277 (394)
+.-.+.-|+|.+|+|||+|+..++-..... ..-..++|++-...|++.++.+ +++.++...... .-... +
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 345677899999999999998876422221 1124678999999999888654 566665542110 00111 3
Q ss_pred HHHHH---HHHHHHcc-CCeEEEEEeCCCC
Q 016120 278 YQLKK---SILRDYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 278 ~~~~~---~~l~~~l~-~kr~LlVlDdv~~ 303 (394)
.+.+. ..+...+. .+--|||+|.+-.
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 33333 33333443 3456899999864
No 246
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.0012 Score=60.87 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=40.5
Q ss_pred ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCcccccc
Q 016120 187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY 238 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 238 (394)
+|+|.++.++++.=.+... +..+--+.++|++|.||||||..+.+ +...+
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn 79 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVN 79 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCC
Confidence 8999999888887666543 34577889999999999999999999 44443
No 247
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.74 E-value=0.015 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.+++|+|..|+|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999863
No 248
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.74 E-value=0.0024 Score=57.29 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=62.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
..++.|.|+.|.||||+.+.+.... +.. .+..+|+... ..-.+...|...++.........+. ...-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la--~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~-fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMA--QIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLST-FASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHH--HcCCCcchhh--cCccChhheeEecCCccccchhhhH-HHHHHHHHHHH
Confidence 3689999999999999998886421 111 1111221111 1112333444444433221111111 11111122333
Q ss_pred c--cCCeEEEEEeCCCC--CchhH----HHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 289 L--TNKKYFIVLDDVFD--NSEIW----SDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 289 l--~~kr~LlVlDdv~~--~~~~~----~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+ ..++-|++||.... ++.+. ..+...+. ..|+.+|++|.+.+++..+
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 3 35688999999865 23221 12223332 2378899999999988877
No 249
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.73 E-value=0.014 Score=61.50 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=83.4
Q ss_pred ccceecccHHHHHHHHh---cCC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLI---EGP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
++.|.+...+++.+.+. ... .-.+-+.++|++|+|||++|+.+.+ +...+| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------h
Confidence 77787766665554442 210 1123488999999999999999987 343333 2222111 1
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C--------chhH----HHHHhhCCC--CC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N--------SEIW----SDLEELLPD--DE 319 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~--------~~~~----~~l~~~l~~--~~ 319 (394)
.....+. ....+...+.......+++|++|+++. . ...+ ..+...+.. ..
T Consensus 222 ----~~~~~g~---------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 222 ----VEMFVGV---------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred ----HHhhhcc---------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 1111000 222333334444445789999999865 0 0112 222222211 12
Q ss_pred CCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 320 NGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
.+.-+|.||..++.....-.. .-+..+. ++.. +.++-.+++..++...+
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~-----v~~P--d~~~R~~Il~~~~~~~~ 339 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVV-----VGLP--DVRGREQILKVHMRRVP 339 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEE-----cCCC--CHHHHHHHHHHHhhcCC
Confidence 344455577766543322111 1245666 8777 77788888887766544
No 250
>PRK09354 recA recombinase A; Provisional
Probab=96.73 E-value=0.0066 Score=58.58 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHH
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSIL 285 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l 285 (394)
+.-+++-|+|++|+||||||.+++. .....-..++|+.....+++. .++.++.....--.... +.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3456888999999999999988876 333344677899887777753 34555433111000111 455556666
Q ss_pred HHHcc-CCeEEEEEeCCCC
Q 016120 286 RDYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 286 ~~~l~-~kr~LlVlDdv~~ 303 (394)
...++ +..-++|+|-|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 66654 4567999999864
No 251
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.72 E-value=0.0072 Score=56.20 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-------cccCc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-------VIIGE 276 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-------~~~~~ 276 (394)
.-.+.=|+|.+|+|||+|+..++-...+... =..++|++-...|...++. +|++..+...... ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 3458889999999999999877643232221 2358899988889887764 5676654321110 11111
Q ss_pred -CHHHHHHHHHHHc-cCCeEEEEEeCCCC
Q 016120 277 -DYQLKKSILRDYL-TNKKYFIVLDDVFD 303 (394)
Q Consensus 277 -~~~~~~~~l~~~l-~~kr~LlVlDdv~~ 303 (394)
+...+...+...+ .++--|||+|.+-.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHH
Confidence 3333344444444 34556999999854
No 252
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.044 Score=55.80 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=88.2
Q ss_pred ccceecccHHHHHHHHhcC----C-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG----P-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++-|.++.+.++...+... + ....=|.+||++|+|||-||++|+| +-+-+| ++|-. .+
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKG----PE 580 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKG----PE 580 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecC----HH
Confidence 4555666666766665543 0 1244567899999999999999999 666665 22222 12
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC------Cchh------HHHHHhhCCCC--CCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD------NSEI------WSDLEELLPDD--ENG 321 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~------~~~~------~~~l~~~l~~~--~~g 321 (394)
++.... .++.....+...+.-..-+|.|.+|.+.. +... .++|..-+... ..|
T Consensus 581 LlNkYV-------------GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 581 LLNKYV-------------GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred HHHHHh-------------hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc
Confidence 222211 11233333333333356799999999975 1222 23444444322 345
Q ss_pred cEEEEecCChHHHhhchhcC--CCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 322 SRVLITVTDPDLLASLEMEN--GEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 322 s~IivTTR~~~v~~~~~~~~--~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
--||-.|-.+++....-..+ -+++.. ++.- +.+|-..+++....
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~Ly-----V~lP--n~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLY-----VGLP--NAEERVAILKTITK 693 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceee-----ecCC--CHHHHHHHHHHHhc
Confidence 55666666565543321111 134444 8888 88999999988765
No 253
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.71 E-value=0.019 Score=51.27 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=33.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHh
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLA 335 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~ 335 (394)
.+...|-.++-+++||+--. +....+.+...+... ..|..||++|.+.....
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 34455566788999999877 444445554444321 23677888888877654
No 254
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.71 E-value=0.017 Score=51.95 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=32.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~ 202 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3444455667899999876 444444444444321 2366788888887665544
No 255
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.70 E-value=0.0026 Score=56.66 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE 276 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 276 (394)
+.+..+... +-++..|.|.+|+||||+++.+... .... ...+.+....+ .....+.+..+....
T Consensus 8 ~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~----~Aa~~L~~~~~~~a~------- 71 (196)
T PF13604_consen 8 EAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTN----KAAKELREKTGIEAQ------- 71 (196)
T ss_dssp HHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSH----HHHHHHHHHHTS-EE-------
T ss_pred HHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcH----HHHHHHHHhhCcchh-------
Confidence 344444333 2467788999999999999888762 3222 23333333332 222233333332211
Q ss_pred CHHHHHHHHHHHc------cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEe
Q 016120 277 DYQLKKSILRDYL------TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLIT 327 (394)
Q Consensus 277 ~~~~~~~~l~~~l------~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivT 327 (394)
+...........- ..++-+||+|+..- +...+..+....+. .|+|+|+.
T Consensus 72 Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 72 TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 2221111110000 12335999999987 56677777777654 46777764
No 256
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.70 E-value=0.027 Score=51.18 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-.+++|+|..|+|||||++.+..-
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 257
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.69 E-value=0.022 Score=52.22 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=34.7
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++=+++||+--. +...-+.+...+.. ...|..||++|.+...+...
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 220 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence 34445556677999999877 45444555544432 12356799999998766554
No 258
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.68 E-value=0.0094 Score=51.01 Aligned_cols=120 Identities=10% Similarity=0.040 Sum_probs=62.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccccc-ccCeeE--EEEeCCCCCHHHHHHHHH--HH--hCCCCCC-ccccCc---CH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKF-YFDCLA--WVRVSIAYDFGKMLDDII--KS--VMPPSRV-SVIIGE---DY 278 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~--wv~vs~~~~~~~i~~~i~--~~--l~~~~~~-~~~~~~---~~ 278 (394)
..|-|++..|.||||+|..+.- +... .+.+.+ |+.-........++..+- .. .+....- .++... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4677888889999999977765 2222 222222 233222233333333320 00 0000000 000000 12
Q ss_pred HHHHHHHHHHccC-CeEEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120 279 QLKKSILRDYLTN-KKYFIVLDDVFD----NSEIWSDLEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 279 ~~~~~~l~~~l~~-kr~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~IivTTR~~ 331 (394)
....+..++.+.. +-=|||||++-. ..-..+.+...+.....+..||+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 2233344444544 445999999865 2334567777777677778899999985
No 259
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.68 E-value=0.023 Score=52.17 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +......+...+..-..+..||++|.+.+.+...
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 208 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSI 208 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 4444555667899999876 4444444444333222245688888887765544
No 260
>PRK10908 cell division protein FtsE; Provisional
Probab=96.67 E-value=0.026 Score=51.10 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +...-+.+...+... ..|..||++|.+.+.....
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR 203 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 3444455677999999876 443333343333321 2356788888888766655
No 261
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.66 E-value=0.023 Score=52.69 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=34.1
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++=+++||+.-. +......+...+... ..|..||++|.+.......
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASY 203 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444555678999999876 455455555444322 2366788898888766544
No 262
>PRK06762 hypothetical protein; Provisional
Probab=96.66 E-value=0.0076 Score=51.91 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999987
No 263
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.018 Score=52.89 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=33.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +......+...+... ..|..||++|.+.+.....
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~ 198 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI 198 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh
Confidence 4444555677999999877 444445555544432 2366788888887665543
No 264
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0061 Score=55.69 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=32.6
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++=+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~ 196 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI 196 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 3334445667889999876 454444454444322 2366788899888765544
No 265
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.66 E-value=0.0086 Score=52.40 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 266
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.65 E-value=0.013 Score=54.16 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=72.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccccc----------------cc-CeeEEEEe----------------CC------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKF----------------YF-DCLAWVRV----------------SI------ 249 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------~F-~~~~wv~v----------------s~------ 249 (394)
-.+++|+|+.|+|||||.+.++.-..-.. .+ ....+|.- +.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~ 107 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence 46899999999999999999975211000 00 01112211 11
Q ss_pred ----CCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CC
Q 016120 250 ----AYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DE 319 (394)
Q Consensus 250 ----~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~ 319 (394)
...-.++..+.++.++...-..+.+++ +-.+.+ -.+...|.++.=+|.||.=-+ |...--.+...+.. ..
T Consensus 108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 111223455556666665444444555 444444 445556778888889998655 22211222222221 24
Q ss_pred CCcEEEEecCChHHHhhc
Q 016120 320 NGSRVLITVTDPDLLASL 337 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~~ 337 (394)
.|..||+++.+.+.|...
T Consensus 188 ~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 188 KGLTVVMVLHDLNLAARY 205 (258)
T ss_pred cCCEEEEEecCHHHHHHh
Confidence 467799999999887776
No 267
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.058 Score=51.68 Aligned_cols=154 Identities=12% Similarity=0.050 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC-----cccccccCe--eEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016120 195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN-----DHVKFYFDC--LAWVRVSIAYDFGKMLDDIIKSVMPP 267 (394)
Q Consensus 195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-----~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~~ 267 (394)
..++.+.+..+ .-...+-+.|+.|+||+++|+.+..- .....+-.| +-++..+..+|...+ .+.
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE 82 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence 34555554433 33557889999999999999887541 100000000 011111222221110 000
Q ss_pred CCCccccCcCHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhc
Q 016120 268 SRVSVIIGEDYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEME 340 (394)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~ 340 (394)
.. +..+ ..+++.+ +.+.+ .+++=.+|+|++.. +....+.+...+-.-..++.+|++|.++ .+.... .
T Consensus 83 ~~-~~~I--~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI--~ 156 (319)
T PRK06090 83 KE-GKSI--TVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI--V 156 (319)
T ss_pred cC-CCcC--CHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH--H
Confidence 00 0001 3333332 22222 24556889999998 7778888888887666777777766664 555555 3
Q ss_pred CCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 341 NGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 341 ~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
+....+. +.++ +.++..+.+...
T Consensus 157 SRCq~~~-----~~~~--~~~~~~~~L~~~ 179 (319)
T PRK06090 157 SRCQQWV-----VTPP--STAQAMQWLKGQ 179 (319)
T ss_pred hcceeEe-----CCCC--CHHHHHHHHHHc
Confidence 5667888 9999 999988877653
No 268
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.65 E-value=0.008 Score=54.89 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++=+++||.--. +......+...+..- ..|..||++|.+.......
T Consensus 125 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 181 (230)
T TIGR01184 125 IARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLL 181 (230)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3444455667899999876 444445554444321 2356788888887665544
No 269
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.64 E-value=0.022 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|+|||||++.+..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 270
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.63 E-value=0.019 Score=50.92 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=59.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE---------------EeCCCCC---HHHHHHHHHHHhCCCCCC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV---------------RVSIAYD---FGKMLDDIIKSVMPPSRV 270 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---------------~vs~~~~---~~~i~~~i~~~l~~~~~~ 270 (394)
-.+++|.|..|.|||||.+.+..-.. .......+++ .+.+.+. ...+...+.-.....
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--- 110 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence 35889999999999999999986320 0111222211 1111111 112222221110000
Q ss_pred ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChH
Q 016120 271 SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPD 332 (394)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~ 332 (394)
.++....+. -.+...+..++-++++|+--. +......+...+... ..|..||++|.+..
T Consensus 111 --~LS~G~~qr-v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 --GLSGGERKR-VSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred --cCCHHHHHH-HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 011122222 334444555667899999877 455555555444322 23667888888764
No 271
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.62 E-value=0.023 Score=57.75 Aligned_cols=126 Identities=10% Similarity=0.053 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE-------E----eCCCCCHHH------------------HHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV-------R----VSIAYDFGK------------------MLDD 259 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~----vs~~~~~~~------------------i~~~ 259 (394)
-.+++|+|..|.|||||++.+..-.. .....+|+ . .....++.+ ....
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 35889999999999999999986311 11111221 0 011111111 1123
Q ss_pred HHHHhCCCCCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHH
Q 016120 260 IIKSVMPPSRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLL 334 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~ 334 (394)
+++.++........... +..+.+ -.+...|...+-+|+||+--. |......+...+.. ...|..||++|.+....
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i 206 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 34444332211111222 222222 234455556778999999876 44433344333322 13466788999887665
Q ss_pred hhc
Q 016120 335 ASL 337 (394)
Q Consensus 335 ~~~ 337 (394)
...
T Consensus 207 ~~l 209 (549)
T PRK13545 207 KSF 209 (549)
T ss_pred HHh
Confidence 544
No 272
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.017 Score=54.03 Aligned_cols=93 Identities=14% Similarity=-0.026 Sum_probs=60.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH-hCCCCCCccccCc-CHHHHHHH
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS-VMPPSRVSVIIGE-DYQLKKSI 284 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-l~~~~~~~~~~~~-~~~~~~~~ 284 (394)
+.-+++=|+|+.|+||||+|.+++- ..+..-..++|++....+++..+.. +... +..- ...+..+. ....+.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l-~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNL-LVSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcce-eEecCCCHHHHHHHHHH
Confidence 4567889999999999999988876 3444445889999999999877543 3333 2111 10111222 34444455
Q ss_pred HHHHccCCeEEEEEeCCCC
Q 016120 285 LRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~ 303 (394)
+......+--|+|+|.|-.
T Consensus 134 ~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHhccCCCCEEEEecCcc
Confidence 5554444467999999865
No 273
>PF14516 AAA_35: AAA-like domain
Probab=96.61 E-value=0.028 Score=54.37 Aligned_cols=172 Identities=11% Similarity=0.097 Sum_probs=93.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC-----CCHHHH----H
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA-----YDFGKM----L 257 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i----~ 257 (394)
..+.|...-+++.+.|...+ ..+.|.|+..+|||+|...+.+..+- ..+. +++++...- .+.... .
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred cccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence 45778877777888887642 57889999999999999999874222 2343 456765541 234444 4
Q ss_pred HHHHHHhCCCCCCcccc--Cc-CHHHHHHHHHHHc-c--CCeEEEEEeCCCC--C-chhHHHHHhhCC----CCC----C
Q 016120 258 DDIIKSVMPPSRVSVII--GE-DYQLKKSILRDYL-T--NKKYFIVLDDVFD--N-SEIWSDLEELLP----DDE----N 320 (394)
Q Consensus 258 ~~i~~~l~~~~~~~~~~--~~-~~~~~~~~l~~~l-~--~kr~LlVlDdv~~--~-~~~~~~l~~~l~----~~~----~ 320 (394)
..+..+++......... .. ........+.+++ + +++.+|+||+|.. + ....+++...+. ... .
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 45555554432111000 01 2233444555543 2 5899999999987 2 222222222221 111 1
Q ss_pred Cc--EEEEecCChHHHhhchh--cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 321 GS--RVLITVTDPDLLASLEM--ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 321 gs--~IivTTR~~~v~~~~~~--~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
.+ -|++.+........... -+....++ |+++ +.+|...|..++
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~-----L~~F--t~~ev~~L~~~~ 213 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIE-----LPDF--TPEEVQELAQRY 213 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCccccccee-----CCCC--CHHHHHHHHHhh
Confidence 11 12222211111111100 12244677 9999 999999998876
No 274
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.074 Score=51.49 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=52.7
Q ss_pred CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120 291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI 368 (394)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~ 368 (394)
+++=++|+|++.. +...++.+...+-.-.+++.+|++|.+ ..+...+ .+....++ +.++ +.++..+.+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI--~SRcq~i~-----~~~~--~~~~~~~~L~ 201 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTI--LSRCRQFP-----MTVP--APEAAAAWLA 201 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHH--HhcCEEEE-----ecCC--CHHHHHHHHH
Confidence 4556889999998 788888888888766677776666665 4555444 24556788 9999 9999888886
Q ss_pred HH
Q 016120 369 LH 370 (394)
Q Consensus 369 ~~ 370 (394)
..
T Consensus 202 ~~ 203 (342)
T PRK06964 202 AQ 203 (342)
T ss_pred Hc
Confidence 64
No 275
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.60 E-value=0.016 Score=52.24 Aligned_cols=51 Identities=25% Similarity=0.424 Sum_probs=31.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-C-CCcEEEEecCChHHHh
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-E-NGSRVLITVTDPDLLA 335 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~-~gs~IivTTR~~~v~~ 335 (394)
+...+...+=+++||+--. +...-..+...+... . .|..||++|.+.+...
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 4444555677899999876 444444444444332 2 3667888888877665
No 276
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.022 Score=53.26 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=32.3
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++=+|+||+--. +...-..+...+..- ..|..||++|.+.......
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~ 227 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRL 227 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 4444556677899999876 444444444444321 2366788888887655443
No 277
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.019 Score=59.47 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=49.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
+.-+++-++|++|+||||||..|+++. .| -++=|++|..-....+-..|...+.-.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~------------------- 379 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNH------------------- 379 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhc-------------------
Confidence 456799999999999999999998742 22 245567777666555555544433221
Q ss_pred HHcc--CCeEEEEEeCCCC
Q 016120 287 DYLT--NKKYFIVLDDVFD 303 (394)
Q Consensus 287 ~~l~--~kr~LlVlDdv~~ 303 (394)
..+. +++..||+|.+..
T Consensus 380 s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 380 SVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccccCCCcceEEEecccC
Confidence 1221 4778899999987
No 278
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.023 Score=52.01 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=32.8
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+...+-+++||.-.. +......+...+... ..|..||++|.+.+.....
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~ 211 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREY 211 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3444555667899999877 444444444444332 2356688888887766644
No 279
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.59 E-value=0.004 Score=59.41 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=32.6
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++-+|+||+--. ++..-..+...+.. ...|..||+||.+.+.+...
T Consensus 134 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~ 190 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL 190 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 34445556778899999876 33332333332221 12367799999988766554
No 280
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0077 Score=60.93 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=96.2
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccc--cccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK--FYFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|.+.....|.+.+..+. -..--...|+.|+||||+|+.+..-.-.. .+.+ .+..-..-+.|...-
T Consensus 17 evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e---------PC~~C~~Ck~I~~g~ 86 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE---------PCGKCISCKEINEGS 86 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC---------cchhhhhhHhhhcCC
Confidence 88999999999999887652 23344568999999999998886421111 1111 111111111111110
Q ss_pred CCCCCCccccCc-CHHHHHHHHHHHc----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhc
Q 016120 265 MPPSRVSVIIGE-DYQLKKSILRDYL----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASL 337 (394)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~l~~~l----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~ 337 (394)
...--+....+. ..++......+.. +++-=..|+|.|.- ....|+.|...+-.-..+-+.|+ ||--+.+....
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 000000000111 3344443333332 34556889999987 67888888887766555655454 55555665555
Q ss_pred hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.+....|. +..| +.++-...+...+.
T Consensus 167 --lSRcq~f~-----fkri--~~~~I~~~L~~i~~ 192 (515)
T COG2812 167 --LSRCQRFD-----FKRL--DLEEIAKHLAAILD 192 (515)
T ss_pred --hhcccccc-----ccCC--CHHHHHHHHHHHHH
Confidence 35567788 9999 88877777766654
No 281
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.58 E-value=0.021 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|+|||||++.+..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 282
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.57 E-value=0.014 Score=51.59 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|+|||||.+.+..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4889999999999999999975
No 283
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.57 E-value=0.0049 Score=59.49 Aligned_cols=26 Identities=12% Similarity=0.145 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.....++|+|++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999993
No 284
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.57 E-value=0.02 Score=51.46 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++=+++||+--. +....+.+...+..- ..|..||++|.+.+.....
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3444455667899999876 455455554444321 2356688888887655443
No 285
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.57 E-value=0.057 Score=51.78 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=32.7
Q ss_pred cccHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 192 ERGREELFDLLIEGP-SGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 192 ~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+.-.+.|.+.|...+ ....+|+|.|.=|+|||++.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344566777777653 56889999999999999999999873
No 286
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.027 Score=54.21 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120 291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI 368 (394)
Q Consensus 291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~ 368 (394)
+++-++|+|++.. +...-+.+...+.....++.+|++|.+. .+...+ .+....++ +.++ +.++..+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti--~SRc~~~~-----~~~~--~~~~~~~~L~ 182 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI--KSRCRKMV-----LPAP--SHEEALAYLR 182 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHH--HHHhhhhc-----CCCC--CHHHHHHHHH
Confidence 3444456688877 5555566665554434456677777765 454444 24456777 9999 9999887775
Q ss_pred H
Q 016120 369 L 369 (394)
Q Consensus 369 ~ 369 (394)
+
T Consensus 183 ~ 183 (325)
T PRK08699 183 E 183 (325)
T ss_pred h
Confidence 5
No 287
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.022 Score=51.25 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=40.9
Q ss_pred HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhchhcCCCceee
Q 016120 281 KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 281 ~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
-...+.+.+--++-|.|||..++ +.+.++.+...+.. ..+|+-+++.|..+.++... .++.+|-
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i---~pD~vhv 217 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI---KPDKVHV 217 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc---CCCEEEE
Confidence 34455555555778999999998 45555444433321 13466688888888888888 4555544
No 288
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.55 E-value=0.025 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 289
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.54 E-value=0.004 Score=57.10 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=33.7
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++-+++||+.-. +....+.+...+... ..|..||++|.+...+...
T Consensus 141 laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~ 197 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEV 197 (237)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence 3334455677899999877 555555555555432 2266788888888765544
No 290
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.54 E-value=0.016 Score=52.93 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=55.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc---------------
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS--------------- 271 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--------------- 271 (394)
+.-.++.|.|.+|+|||+||.++... ..+ +=..++|++..+. +..+..++ .+++......
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45678889999999999999988652 122 2346788887654 44555543 3333211100
Q ss_pred cccCc-CHHHHHHHHHHHccC-CeEEEEEeCCC
Q 016120 272 VIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVF 302 (394)
Q Consensus 272 ~~~~~-~~~~~~~~l~~~l~~-kr~LlVlDdv~ 302 (394)
..... +.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00111 446677777777754 56689999986
No 291
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.54 E-value=0.0023 Score=65.05 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=39.3
Q ss_pred ccceecccHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIE----GPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.++.+++|++.|.. -+...+++.++|++|+|||+||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 889999999999999933 234567999999999999999999987
No 292
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.53 E-value=0.028 Score=51.32 Aligned_cols=53 Identities=30% Similarity=0.413 Sum_probs=32.0
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +......+...+... ..|..||++|.+.+....+
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 209 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSL 209 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 3444455677899999876 444444444444321 1456688888887766554
No 293
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.53 E-value=0.016 Score=52.33 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+... +......+...+.....+..||++|.+......+
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 204 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS 204 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence 3344445667899999887 4444444444444323345688888877655433
No 294
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.52 E-value=0.042 Score=52.51 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=32.2
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~ 337 (394)
+...|-.++=+|+||+--. ++..-..+...+.. ...|..||+||.+.+-+..+
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~ 204 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL 204 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 4455566788999999876 33322223222221 13477899999988765544
No 295
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.51 E-value=0.027 Score=50.24 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 296
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.50 E-value=0.031 Score=51.56 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++-+++||.--. +...-..+...+... ..|..||++|.+.......
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~ 210 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDV 210 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3444555677999999876 444334444333221 2366688888887665544
No 297
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.04 Score=53.96 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+.++|+++|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999988876
No 298
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.49 E-value=0.026 Score=50.18 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-.+++|+|+.|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358899999999999999999763
No 299
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.49 E-value=0.019 Score=54.96 Aligned_cols=96 Identities=6% Similarity=0.059 Sum_probs=58.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-cc---cCc-C
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-VI---IGE-D 277 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~---~~~-~ 277 (394)
+.-.++-|+|.+|+|||+|+..++-..... ..=..++|++....|++.++. ++++.++...... .+ ... +
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 345688899999999999998776422221 112367899998888888865 4566665432110 00 011 2
Q ss_pred HHHH---HHHHHHHcc-CCeEEEEEeCCCC
Q 016120 278 YQLK---KSILRDYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 278 ~~~~---~~~l~~~l~-~kr~LlVlDdv~~ 303 (394)
.+.. ...+...+. ++--|+|+|.+-.
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 3333 333444443 4556899999864
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.49 E-value=0.037 Score=57.10 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=33.1
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+|+||.-.+ +...-..+...+.. .|..||++|.+.......
T Consensus 165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSV 218 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhh
Confidence 33444555677899999887 44444555555532 355688888887765544
No 301
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0076 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
++.+|+|-|.+|+||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 468999999999999999999988
No 302
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.48 E-value=0.035 Score=56.99 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=65.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccc-cc--ccC---------------eeEEEEeCC----CCCH--------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHV-KF--YFD---------------CLAWVRVSI----AYDF-------------- 253 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---------------~~~wv~vs~----~~~~-------------- 253 (394)
.+++|+|+.|+|||||.+.++.-..- .. .|+ ...++.-.. ..++
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 117 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS 117 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence 58999999999999999999753110 00 010 122332111 0111
Q ss_pred HHHHHHHHHHhCCCCCCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEec
Q 016120 254 GKMLDDIIKSVMPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITV 328 (394)
Q Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTT 328 (394)
..-..+++..++........... +. +...-.+...|...+-+|+||.-.. +...-..+...+.. ...|..||++|
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivt 197 (510)
T PRK15439 118 MQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS 197 (510)
T ss_pred HHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 12234455555553221112222 22 2222334444556677999999776 33333333333322 12366789999
Q ss_pred CChHHHhhc
Q 016120 329 TDPDLLASL 337 (394)
Q Consensus 329 R~~~v~~~~ 337 (394)
.+.+.+...
T Consensus 198 Hd~~~~~~~ 206 (510)
T PRK15439 198 HKLPEIRQL 206 (510)
T ss_pred CCHHHHHHh
Confidence 987665544
No 303
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.028 Score=53.21 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...|..++-+|+||+-.. +...-..+...+..- ..|..||++|.+.+.+...
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~ 212 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY 212 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 334555667788999999887 343334444433321 2366788888887665443
No 304
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.47 E-value=0.027 Score=51.20 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=33.8
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhh
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~ 336 (394)
.+...+-.++=+++||+--. +......+...+..- ..|..||++|.+.+....
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~ 203 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH 203 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh
Confidence 34444556677889999876 455555555544432 236678888888876653
No 305
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.033 Score=50.81 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=33.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++=+++||+... +......+...+..- ..|..||++|.+.......
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~ 197 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTM 197 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 34444556677899999877 455555555444332 2366788888887654443
No 306
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.46 E-value=0.023 Score=54.58 Aligned_cols=96 Identities=6% Similarity=0.027 Sum_probs=58.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCccccccc----CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-------cccC
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF----DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-------VIIG 275 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-------~~~~ 275 (394)
+.-.++-|+|++|+|||+++..++........+ ..++||+....+++.++. ++++.++...... ...+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence 345688899999999999998887532221111 368899998888877754 4445554322100 0011
Q ss_pred c-CHHHHHHHHHHHccC--CeEEEEEeCCCC
Q 016120 276 E-DYQLKKSILRDYLTN--KKYFIVLDDVFD 303 (394)
Q Consensus 276 ~-~~~~~~~~l~~~l~~--kr~LlVlDdv~~ 303 (394)
. ....+...+...+.. +--|||+|-+-.
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1 222334555555543 445999999864
No 307
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.028 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 308
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.46 E-value=0.0084 Score=53.37 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=31.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-CCCHHHHHHHHHHHhCC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~ 266 (394)
++++.++|+.|+||||.+..++.. .+.+=..+..++... .....+-++..++.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 368999999999999877666652 222222334454432 12234444555555543
No 309
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.45 E-value=0.099 Score=47.42 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=69.4
Q ss_pred ccceecccHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIE--GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
.++|.+...+.+++--.. .+....-|.+||..|.||+.|++.+.+ ++....-. -|.|.+.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-------------- 122 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-------------- 122 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--------------
Confidence 899999888887653321 122344567899999999999999998 55444333 2333221
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHc--cCCeEEEEEeCCCC--CchhHHHHHhhCCCC---CCCcEEEEecCC
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD--NSEIWSDLEELLPDD---ENGSRVLITVTD 330 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~---~~gs~IivTTR~ 330 (394)
+...+- .+.+.| ..+||.|..||..- ....++.++..|-.+ .+...++..|.|
T Consensus 123 ------------dl~~Lp-~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ------------DLATLP-DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ------------HHhhHH-HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 222222 222223 35799999999965 456778888777644 333444444444
No 310
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.45 E-value=0.042 Score=52.03 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...|..++=+|+||+.-. +......+...+..- ..|..||++|.+.+.+...
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~ 210 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADY 210 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 334445555677899999876 444445554444321 2366799999988755443
No 311
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.44 E-value=0.036 Score=51.94 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=32.8
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++-+++||+-.. +......+...+..- ..|..||++|.+.+.....
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 202 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEI 202 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 34444556778899999877 444444444443321 2366788888887665443
No 312
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.019 Score=58.60 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=88.7
Q ss_pred ccceecccHHHHHHHHhc---C--------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIE---G--------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.+...+.+.+.+.. . -...+.+-++|++|.|||.||+.+.+ ..+.+|-.+.+-
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~---------- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS---------- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH----------
Confidence 566666555555444432 1 13455788999999999999999999 555555332211
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-----C-c------hhHHHHHhhCCCCCCCcE
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-----N-S------EIWSDLEELLPDDENGSR 323 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-----~-~------~~~~~l~~~l~~~~~gs~ 323 (394)
+++... +..+...+........+..++.|.+|.+.. . . .....+...+......+.
T Consensus 311 ---~l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 311 ---ELLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred ---HHhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 111111 111344445555555567899999999975 1 1 233444444433333333
Q ss_pred --EEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 324 --VLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 324 --IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
||-||-.++.....-.. .-...+. +++- +.++....|..+..
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~-----v~~p--d~~~r~~i~~~~~~ 424 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIY-----VPLP--DLEERLEIFKIHLR 424 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEee-----cCCC--CHHHHHHHHHHHhc
Confidence 44455554433321001 2255666 8888 89999999999865
No 313
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.44 E-value=0.036 Score=52.15 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=32.9
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHh
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLA 335 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~ 335 (394)
-.+...|-.++-+|+||+... +...-..+...+..- ..|..||++|.+.+...
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVP 202 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 344555666778999999887 444444554444321 23567888888876554
No 314
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0029 Score=65.26 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=89.6
Q ss_pred ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
+=+|.++.+++|++.|--. +-.-+++++||++|||||.|++.|+. .....|-. ++++.--|..+|
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI------ 392 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI------ 392 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh------
Confidence 5689999999999998532 23347999999999999999999998 56655522 233333232221
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C----chhHHHHHhhCCCCCC-------------CcEE
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N----SEIWSDLEELLPDDEN-------------GSRV 324 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~----~~~~~~l~~~l~~~~~-------------gs~I 324 (394)
.+... ..+..-...+.+.+++. +.+.-+++||.|+. . .+--..+...|..-.| =|+|
T Consensus 393 --RGHRR--TYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 --RGHRR--TYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred --ccccc--cccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 11110 00111222233333222 34677899999975 1 1111223332221111 1454
Q ss_pred E-EecCCh-H-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 325 L-ITVTDP-D-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 325 i-vTTR~~-~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
+ |||-|. + +...+ .....+++ +.+- ..+|=.+.-+++
T Consensus 468 mFiaTANsl~tIP~PL--lDRMEiI~-----lsgY--t~~EKl~IAk~~ 507 (782)
T COG0466 468 MFIATANSLDTIPAPL--LDRMEVIR-----LSGY--TEDEKLEIAKRH 507 (782)
T ss_pred EEEeecCccccCChHH--hcceeeee-----ecCC--ChHHHHHHHHHh
Confidence 4 455553 2 33333 24578888 9988 888877776665
No 315
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.43 E-value=0.036 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISG 46 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 316
>PRK13409 putative ATPase RIL; Provisional
Probab=96.43 E-value=0.024 Score=59.16 Aligned_cols=128 Identities=13% Similarity=0.047 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccc-cc--ccCeeEEEEeCCC------CCHHH-------------HHHHHHHHhCC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHV-KF--YFDCLAWVRVSIA------YDFGK-------------MLDDIIKSVMP 266 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~~~~wv~vs~~------~~~~~-------------i~~~i~~~l~~ 266 (394)
-.+++|+|..|+|||||++.++....- .. .++..+. .+.+. .++.+ ...++++.++.
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~-y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l 443 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL 443 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEE-EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence 358999999999999999999863211 00 0111110 11121 11211 12334444443
Q ss_pred CCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 267 PSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 267 ~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.......... +..+. .-.+...|..++=+++||.--. +...-..+...+..- ..|..||++|.+...+...
T Consensus 444 ~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 2211122333 33332 2334455666788999999766 343334444433321 2356688888888766655
No 317
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.034 Score=51.06 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|.|||||++.++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 318
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.42 E-value=0.032 Score=57.14 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceee
Q 016120 278 YQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 278 ~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
-....-.|.+.|-.++=+|+||.=-+ +.+....|...|.. -+| .+||.|.++.....+ +..+++
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V----~t~I~~ 222 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV----ATHILE 222 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH----hhheEE
Confidence 34455667777777888999999877 55555667677653 335 699999999888887 345555
No 319
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.42 E-value=0.032 Score=49.43 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999763
No 320
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.42 E-value=0.029 Score=52.78 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=34.9
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...+-.++-+|+||+... +...-..+...+..- ..|..||++|.+......+
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~ 207 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALS 207 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 344455566788999999887 444445555444322 2367788888887665433
No 321
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.42 E-value=0.024 Score=51.25 Aligned_cols=51 Identities=14% Similarity=0.310 Sum_probs=31.5
Q ss_pred HHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 287 DYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 287 ~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
..+-.++=+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 145 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 145 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 33445567899999876 444444444444322 2467799999888765554
No 322
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.42 E-value=0.032 Score=54.75 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5889999999999999999975
No 323
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.41 E-value=0.027 Score=52.05 Aligned_cols=53 Identities=11% Similarity=0.253 Sum_probs=32.0
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +......+...+... ..|..||++|.+.+.....
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 213 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREF 213 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 4444455667899999876 444444454444322 2366788888887655443
No 324
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.41 E-value=0.029 Score=57.85 Aligned_cols=132 Identities=12% Similarity=0.029 Sum_probs=88.4
Q ss_pred ccceecccHHHHHHHHhcC--C-CCceEEEEEcCCCccHHHHHHHHhcCcc------cccccCeeEEEEeCCCCCHHHHH
Q 016120 187 DINEFERGREELFDLLIEG--P-SGLAVVAILDSSGFDKTVFTADTYNNDH------VKFYFDCLAWVRVSIAYDFGKML 257 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~i~ 257 (394)
.+-+|+.+..+|-..+..- + ..-+.+-|.|.+|+|||..+..|.+... --..|+ .+.|+.-.-..+.+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 5677999999998887542 2 2334788999999999999999987322 112343 3455555556789999
Q ss_pred HHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc-----CCeEEEEEeCCCC-CchhHHHHHhhCCC-CCCCcEEEE
Q 016120 258 DDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT-----NKKYFIVLDDVFD-NSEIWSDLEELLPD-DENGSRVLI 326 (394)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~-~~~~~~~l~~~l~~-~~~gs~Iiv 326 (394)
..|...+.+... ......+.|..+.. .+++++++|++.. -...-+-+...|.+ ..++||++|
T Consensus 476 ~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 476 EKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred HHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 999999988755 66667777777764 2468888898765 11111333344432 345777655
No 325
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.41 E-value=0.037 Score=51.41 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 291 NKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 291 ~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.++-+++||+--. +......+...+... ..|..||++|.+.......
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 207 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARY 207 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 4678999999877 444444444444321 2356688888887665543
No 326
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.40 E-value=0.0047 Score=55.19 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=58.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 289 (394)
.+++|+|+.|.||||+.+.+.... +..+.. .|+.... ... ....++...++.......... ....-...+...+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~-~~~~~g--~~~~~~~-~~i-~~~dqi~~~~~~~d~i~~~~s-~~~~e~~~l~~i~ 103 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV-LLAQIG--CFVPAES-ASI-PLVDRIFTRIGAEDSISDGRS-TFMAELLELKEIL 103 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH-HHHHcC--CCccccc-ccc-CCcCEEEEEecCcccccCCce-eHHHHHHHHHHHH
Confidence 689999999999999999997321 100000 1111000 000 001111111111111000111 1112222333333
Q ss_pred --cCCeEEEEEeCCCC--CchhHH----HHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 290 --TNKKYFIVLDDVFD--NSEIWS----DLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 290 --~~kr~LlVlDdv~~--~~~~~~----~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
...+-++++|..-. +...-. .+...+. ..++.+|++|.+.++...+
T Consensus 104 ~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~ 157 (202)
T cd03243 104 SLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLP 157 (202)
T ss_pred HhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHh
Confidence 35789999999866 222111 2222222 2367799999999888877
No 327
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.40 E-value=0.044 Score=50.03 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++-+++||+--. +...-..+...+... ..|..||++|.+.+.+..+
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 4444556778899999876 444445555444432 2466788888887765544
No 328
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.39 E-value=0.029 Score=57.56 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHH-HHHHHhcCcccccccCeeEEEEeCCCC--CHHHHHHHHHHHhCCCCCCc
Q 016120 195 REELFDLLIEGPSGLAVVAILDSSGFDKTV-FTADTYNNDHVKFYFDCLAWVRVSIAY--DFGKMLDDIIKSVMPPSRVS 271 (394)
Q Consensus 195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~ 271 (394)
.++|++.+.. ..||.|+|..|+|||| |+|.+|.+--..+ --|.+.++- ....+.+.+.+.++..-...
T Consensus 361 R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edGY~~~-----GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 361 RDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDGYADN-----GMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcccccC-----CeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 4555555544 3689999999999996 8999988522111 123333333 34455666666665543321
Q ss_pred c----ccCc------------CHHHHHHHHHHHccCCeEEEEEeCCCC---CchhHHHHHhhCCCCCCCcEEEEecCChH
Q 016120 272 V----IIGE------------DYQLKKSILRDYLTNKKYFIVLDDVFD---NSEIWSDLEELLPDDENGSRVLITVTDPD 332 (394)
Q Consensus 272 ~----~~~~------------~~~~~~~~l~~~l~~kr~LlVlDdv~~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 332 (394)
. .+++ +---+.+.|.+..-.|=-.+|+|.... |.+.+--|..........-|+||||-.-+
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 0 0111 112233333333334556889999887 44433333332223344679999998754
Q ss_pred HH
Q 016120 333 LL 334 (394)
Q Consensus 333 v~ 334 (394)
.-
T Consensus 512 a~ 513 (1042)
T KOG0924|consen 512 AQ 513 (1042)
T ss_pred HH
Confidence 33
No 329
>PRK10867 signal recognition particle protein; Provisional
Probab=96.39 E-value=0.021 Score=56.92 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++.++|.+|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999997766654
No 330
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.032 Score=52.21 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|.|||||.+.+..
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999975
No 331
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.38 E-value=0.041 Score=53.39 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|...+-+|++|.--. |+..-..+...+... ..|..||++|.+.+++...
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~ 207 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI 207 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34445566778899999876 343334444433322 2366788888888776554
No 332
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.38 E-value=0.027 Score=54.52 Aligned_cols=103 Identities=8% Similarity=0.029 Sum_probs=60.9
Q ss_pred HHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-cc-
Q 016120 200 DLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-VI- 273 (394)
Q Consensus 200 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~- 273 (394)
+.|..+=+.-.++-|+|.+|+|||+|+..++-...... .-..++|++....|.+.++ .+|++.++...... ..
T Consensus 114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i 192 (342)
T PLN03186 114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENV 192 (342)
T ss_pred HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccce
Confidence 33433323456888999999999999987764222111 1126899999999888776 46677665432110 00
Q ss_pred --cCc-CHHHHHHHH---HHHc-cCCeEEEEEeCCCC
Q 016120 274 --IGE-DYQLKKSIL---RDYL-TNKKYFIVLDDVFD 303 (394)
Q Consensus 274 --~~~-~~~~~~~~l---~~~l-~~kr~LlVlDdv~~ 303 (394)
... +.+.+...+ ...+ ..+--|||+|-+-.
T Consensus 193 ~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 193 AYARAYNTDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred EEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 111 333333333 2333 34567999999864
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.047 Score=57.64 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=33.7
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...|-.++=+|+||.-.+ |...-..+...+... .+ .||++|.+......+
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~-tviivsHd~~~l~~~ 212 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QG-TLILISHDRDFLDPI 212 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHh
Confidence 344455566777999999877 444444455555433 23 588888988766655
No 334
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.037 Score=51.95 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=31.9
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~ 336 (394)
.+...+...+=+++||+... +......+...+..- ..|..||++|.+.+.+..
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~ 202 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPV 202 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 34444556678899999887 454445554444321 235668888877665443
No 335
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.024 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35889999999999999999985
No 336
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.032 Score=54.20 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=33.6
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...|..++-+|+||.--. +......+...+..- ..|..||++|.+.+.+..+
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~ 207 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRI 207 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 4444556677899999876 444445555444432 2366788888887766554
No 337
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.37 E-value=0.035 Score=55.35 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=33.2
Q ss_pred HHHHHHccCCeEEEEEeCCCCCch--hHHHHHhhCC-CCCCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFDNSE--IWSDLEELLP-DDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~~~~--~~~~l~~~l~-~~~~gs~IivTTR~~~v~~~~ 337 (394)
--|.+.+-|.++|+|||.=..|.+ -=..+...+. -...|+.+|+.|..+.+...+
T Consensus 481 IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 346667789999999998765221 1122333332 234566677777777766655
No 338
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.36 E-value=0.015 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+..+++|+|++|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999988876
No 339
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.36 E-value=0.044 Score=51.29 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=32.9
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++-+|+||+--. +......+...+... ..|+.||++|.+......+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~ 218 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF 218 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHh
Confidence 34455556778999999876 444344444444322 2366788888887655543
No 340
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.35 E-value=0.064 Score=49.05 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++=+++||+... +......+...+.....|..||++|.+......+
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~ 204 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNA 204 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence 4444555667899999877 4444444544443222466788888887766533
No 341
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.35 E-value=0.038 Score=52.02 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++-+|+||+--. +......+...+..- ..|..||++|.+.+.+...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~ 211 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY 211 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence 4444556778999999877 444444444443321 2366788888887755443
No 342
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.016 Score=54.60 Aligned_cols=81 Identities=7% Similarity=0.099 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccc--cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVK--FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
.++|.++|++|.|||+|++.++++..++ +.|....-+.+.. ..++.++...-+. -...+-+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESgK----------lV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESGK----------LVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhhh----------HHHHHHHHHH
Confidence 5788999999999999999999975444 4565555555533 3444444432111 5667778888
Q ss_pred HHccCCe--EEEEEeCCCC
Q 016120 287 DYLTNKK--YFIVLDDVFD 303 (394)
Q Consensus 287 ~~l~~kr--~LlVlDdv~~ 303 (394)
+.+.++. .++.+|.|..
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 8887665 4556888864
No 343
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0032 Score=53.33 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..-|.|.||+|+||||+++.+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 34688999999999999999987
No 344
>PTZ00301 uridine kinase; Provisional
Probab=96.33 E-value=0.0043 Score=55.86 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998865
No 345
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.33 E-value=0.0027 Score=51.77 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 016120 212 VAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~ 231 (394)
|.|.|..|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 346
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.32 E-value=0.043 Score=54.87 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+..++.++|..|+||||+|..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999988876
No 347
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.04 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|.|||||++.+..
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999974
No 348
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.32 E-value=0.025 Score=50.64 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=37.0
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHH-HHHhhCCCCC-C-CcEEEEecCChHHHhhchhcCCCceee
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWS-DLEELLPDDE-N-GSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~~~-~-gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
.+...+..++-+++||+.-. +..... .+...+.... . |..||++|.+.+....+ +.++.
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~-----d~i~~ 194 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA-----DHIYR 194 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC-----CEEEE
Confidence 34555667888999999887 444444 4444443222 2 55688888888766544 45555
No 349
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.32 E-value=0.056 Score=51.52 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|.|||||.+.+..
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 350
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.31 E-value=0.054 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|+|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4889999999999999999975
No 351
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.31 E-value=0.048 Score=54.38 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999776655
No 352
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.049 Score=51.44 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=33.8
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...|..++-+++||.... +...-..+...+..- ..|..||++|.+.+.+..+
T Consensus 154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~ 212 (286)
T PRK13646 154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARY 212 (286)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 344555666778899999877 343334444444321 3467788888887655433
No 353
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.31 E-value=0.033 Score=51.74 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=33.8
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++-+++||+--. +......+...+... ..|..||++|.+...+...
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~ 218 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 34444566788999999877 444444444444321 2366788888888766644
No 354
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.31 E-value=0.036 Score=51.75 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-.+++|+|+.|.|||||.+.+..-
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358899999999999999999873
No 355
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.30 E-value=0.063 Score=47.79 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHh
Q 016120 211 VVAILDSSGFDKTVFTADTY 230 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~ 230 (394)
+++|+|+.|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999886
No 356
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.30 E-value=0.0029 Score=56.19 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 357
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.29 E-value=0.028 Score=57.67 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=38.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.++|....+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 7899999998888888664444556779999999999999999873
No 358
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.29 E-value=0.048 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999974
No 359
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.29 E-value=0.046 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaG 45 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAG 45 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4889999999999999999975
No 360
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.28 E-value=0.044 Score=50.87 Aligned_cols=54 Identities=9% Similarity=0.245 Sum_probs=34.0
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+++||.--. +......+...+... ..|..||++|.+.......
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~ 218 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 218 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444555677899999876 444445554444322 2367788888888766654
No 361
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.28 E-value=0.028 Score=53.88 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=59.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-c
Q 016120 198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-V 272 (394)
Q Consensus 198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~ 272 (394)
+-+.|..+=+.-.++.|+|.+|+|||||+..++....... .-..++|++-...+...+ +.++++.++...... .
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~ 163 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLD 163 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhc
Confidence 3333433324567889999999999999988864211111 113568998888777776 344555554432110 0
Q ss_pred c---cCc-CHHHH---HHHHHHHcc-CCeEEEEEeCCCC
Q 016120 273 I---IGE-DYQLK---KSILRDYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 273 ~---~~~-~~~~~---~~~l~~~l~-~kr~LlVlDdv~~ 303 (394)
. ... +.+.+ ...+...+. .+--|||+|-+-.
T Consensus 164 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 164 NVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred cEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 0 011 23333 333333343 3566999999864
No 362
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.28 E-value=0.04 Score=51.38 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=32.3
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++=+++||.--. +...-..+...+..- ..|..||++|.+.+.....
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~ 210 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRY 210 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3344455677899999876 444444444444321 2366788999888755444
No 363
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.28 E-value=0.071 Score=49.19 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +...-..+...+.....|..||++|.+.......
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~ 211 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARI 211 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3334455678899999876 4444444444333222356788888887765544
No 364
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.1 Score=50.52 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=87.8
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---ccccccCe-----eEEEEeCCCCCHHHHHHHHHHHhC
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFYFDC-----LAWVRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F~~-----~~wv~vs~~~~~~~i~~~i~~~l~ 265 (394)
..+++.+.+..+ .-..-+.+.|+.|+||+++|..+.... .-...-.| +-++..+..+|+..+ .
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 345566666543 235577799999999999998765421 00000011 012222222222111 0
Q ss_pred CCCCCccccCcCHHHHHHHHHH---H-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchh
Q 016120 266 PPSRVSVIIGEDYQLKKSILRD---Y-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEM 339 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~ 339 (394)
+... ...+ ..++..+.... . ..+++=++|+|+.+. +...-+.|...+-.-..++.+|++|.++ .+....
T Consensus 81 p~~~-~~~I--~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI-- 155 (334)
T PRK07993 81 PEKG-KSSL--GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL-- 155 (334)
T ss_pred cccc-cccC--CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH--
Confidence 0000 0001 33333332222 2 135677899999998 6777788888887666677777777664 455454
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
.+....+. +.++ +.++....+.+.
T Consensus 156 rSRCq~~~-----~~~~--~~~~~~~~L~~~ 179 (334)
T PRK07993 156 RSRCRLHY-----LAPP--PEQYALTWLSRE 179 (334)
T ss_pred Hhcccccc-----CCCC--CHHHHHHHHHHc
Confidence 24455677 9999 999888777554
No 365
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.27 E-value=0.0035 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999873
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.27 E-value=0.051 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+.+++.++|++|+||||++..++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999888876
No 367
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.013 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35889999999999999999976
No 368
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.26 E-value=0.039 Score=56.33 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.++.
T Consensus 29 Ge~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 29 GDSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999975
No 369
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.26 E-value=0.027 Score=53.92 Aligned_cols=96 Identities=8% Similarity=0.069 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------ccccC
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-------SVIIG 275 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~~~~ 275 (394)
+.-.++-|+|.+|+||||++..++....... .=..++||+....++..++. ++++.++..... .....
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCC
Confidence 3456888999999999999988875322211 01268999988888877654 445554433110 00011
Q ss_pred c-CHHHHHHHHHHHccC---CeEEEEEeCCCC
Q 016120 276 E-DYQLKKSILRDYLTN---KKYFIVLDDVFD 303 (394)
Q Consensus 276 ~-~~~~~~~~l~~~l~~---kr~LlVlDdv~~ 303 (394)
. ....+.+.+.+.+.. +.-++|+|.+-.
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 1 112234445555543 245999999865
No 370
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.26 E-value=0.026 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.26 E-value=0.028 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998876
No 372
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.26 E-value=0.045 Score=49.73 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+...+=+++||+--. +....+.+...+... ..|..||++|.+......+
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 213 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARC 213 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 3344445567899999876 444445555544322 2356788898887765433
No 373
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.24 E-value=0.075 Score=48.57 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++=+++||+-.. +......+...+.....|..||++|.+.+....+
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~ 203 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNA 203 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 3334445667899999877 4444444444443323366789999888766543
No 374
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.009 Score=58.34 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHC
Confidence 4789999999999999999975
No 375
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.01 Score=55.40 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=32.4
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++-+++||+--. +...-..+...+... ..|..||++|.+.......
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~ 214 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARY 214 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34445556788999999876 444434444433321 2356788888887655433
No 376
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.034 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++.++|++|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988875
No 377
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.036 Score=51.30 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=32.8
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++-+++||+.-. +...-..+...+... ..|..||++|.+...+...
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~ 220 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI 220 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHh
Confidence 34444556788999999877 343334444433321 2366788888888766554
No 378
>PRK08233 hypothetical protein; Provisional
Probab=96.22 E-value=0.0039 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999873
No 379
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.21 E-value=0.012 Score=57.27 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=34.2
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...|-.++=+++||.--. |...-..+...+.. ...|..+|++|.+...+..+
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~ 203 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV 203 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 344555556777899999876 44444444444432 13366788888888776665
No 380
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.21 E-value=0.032 Score=50.03 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=31.0
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHH
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDL 333 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v 333 (394)
+...+..++-+++||+--. +......+...+.. ...|..||++|.+...
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 3444555678999999876 44444555554442 2346678888887654
No 381
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.20 E-value=0.05 Score=49.35 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++=+++||+--. +....+.+...+... ..|..||++|.+.+.+...
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 212 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI 212 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3344455677899999876 444445554444332 2266788898888766644
No 382
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.064 Score=52.80 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++.++|+.|+||||.+..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999998888876
No 383
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.20 E-value=0.031 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999988864
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=96.20 E-value=0.048 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+..++.++|+.|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999998877775
No 385
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.052 Score=51.23 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=33.0
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhh
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~ 336 (394)
.+...|..++=+|+||.... +......+...+..- ..|..||++|.+.+....
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~ 207 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPL 207 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 34444556778899999887 455545444444322 226678888888765543
No 386
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.081 Score=48.27 Aligned_cols=54 Identities=9% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++-+++||+-.. +......+...+.....|..||++|.+......+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~ 202 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNA 202 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhC
Confidence 34455566778999999887 4444454544443322266788888887666543
No 387
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.11 Score=47.45 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=32.7
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++=+++||+.-. +....+.+...+....+|..||++|.+......+
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 203 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENA 203 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence 33444455667899999876 4444455544443323356788888887655444
No 388
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.012 Score=62.10 Aligned_cols=156 Identities=11% Similarity=0.049 Sum_probs=88.2
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccccc-CeeEEEEeCCCCCHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFYF-DCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
.++||++++.++++.|.....+.++ ++|.+|||||+++.-++..- .+-... +..++. .++..
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g~ 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLGS 236 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHHH
Confidence 5899999999999999876545554 58999999999876665410 111111 111111 01111
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHHHcc-CCeEEEEEeCCCC-----C-----chhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD-----N-----SEIWSDLEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~-----~-----~~~~~~l~~~l~~~~~gs~IivTTR~~ 331 (394)
-..+.. +..+.++....+.+.++ .++..|.+|.+.. . .+.-+-|..+|..+. --.|--||-++
T Consensus 237 LvAGak-----yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~E 310 (786)
T COG0542 237 LVAGAK-----YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLDE 310 (786)
T ss_pred Hhcccc-----ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHHH
Confidence 122221 22255666655555553 4589999999976 1 112233444554443 23466677664
Q ss_pred H---HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHH
Q 016120 332 D---LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFIL 369 (394)
Q Consensus 332 ~---v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~ 369 (394)
. +-...+....-..+. ++.- +.+++...++-
T Consensus 311 YRk~iEKD~AL~RRFQ~V~-----V~EP--s~e~ti~ILrG 344 (786)
T COG0542 311 YRKYIEKDAALERRFQKVL-----VDEP--SVEDTIAILRG 344 (786)
T ss_pred HHHHhhhchHHHhcCceee-----CCCC--CHHHHHHHHHH
Confidence 2 111110012345566 8888 89999888864
No 389
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.17 E-value=0.0042 Score=55.75 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|+|+|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 390
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.17 E-value=0.056 Score=50.31 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=33.2
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+|+||+--. |...-+.+...+... ..|..||++|.+...+...
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~ 219 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRY 219 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3444555677999999876 444445555544432 2366788888888754443
No 391
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.057 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.+..
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G 47 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35889999999999999999975
No 392
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.15 E-value=0.072 Score=49.07 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...+-.++=+++||+.-. +...-..+...+.....|..||++|.+.+.....
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~ 207 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRV 207 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence 334455556777899999876 3333334443333222356788888887655443
No 393
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.0094 Score=58.07 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=33.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+++||.--. +....+.+...+.. ...|..+|++|.+..-+..+
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 35555666778899999776 44444444444332 13366788888888766554
No 394
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.14 E-value=0.037 Score=50.61 Aligned_cols=48 Identities=6% Similarity=0.113 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDI 260 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 260 (394)
-.++.|.|.+|+||||+|.++... -.+.. ..+++++ ...+...++..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEe--CCCCHHHHHHHH
Confidence 458899999999999998655442 22222 3345665 333455666665
No 395
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.099 Score=47.46 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=33.0
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++=+++||+-.. +....+.+...+..-..|..||++|.+......+
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 204 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA 204 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence 34444556778899999876 4444444444433222366788888887665433
No 396
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.13 E-value=0.063 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-.+++|+|+.|+|||||++.++.-
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358899999999999999999863
No 397
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.013 Score=51.20 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999884
No 398
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.12 E-value=0.085 Score=47.14 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=32.5
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++=+++||+-.. +....+.+...+....+|..||++|.+......+
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~ 190 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDY 190 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence 3444455677889999876 4554455544444323466788888887665433
No 399
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.11 E-value=0.01 Score=59.53 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=36.2
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++||++.++.+...+..+. -+.|.|++|+|||+||+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 68999999999998887753 567899999999999999987
No 400
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.10 E-value=0.023 Score=51.57 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 401
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.10 E-value=0.061 Score=48.50 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377899999999999999876
No 402
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.067 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.++.++|+.|+||||++..+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998887
No 403
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.10 E-value=0.077 Score=51.50 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+|+||.--. |+..-..+...+.. ...|..||+||.+.+.+..+
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~ 238 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL 238 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 34444566788999999876 33332333322221 12367799999988766544
No 404
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.10 E-value=0.068 Score=52.31 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=33.7
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CC-CcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--EN-GSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~-gs~IivTTR~~~v~~~~ 337 (394)
-.+...|..++-+|+||+--. +...-..+...+..- .. |..+|++|.+.+-+..+
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l 205 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTL 205 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHh
Confidence 345555667788899999766 344334444433321 22 56788888888766554
No 405
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.10 E-value=0.056 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|+|||||++.+..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5889999999999999999975
No 406
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.09 E-value=0.0062 Score=53.00 Aligned_cols=39 Identities=15% Similarity=-0.018 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccc-cccCeeEEEEeCC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVK-FYFDCLAWVRVSI 249 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~ 249 (394)
..++.+.|+.|+|||.||+.+.. .+. ......+-++.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 56788999999999999999987 333 3344445555544
No 407
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.076 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 408
>PTZ00035 Rad51 protein; Provisional
Probab=96.08 E-value=0.056 Score=52.30 Aligned_cols=96 Identities=5% Similarity=-0.016 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-cc---cCc-C
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-VI---IGE-D 277 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~---~~~-~ 277 (394)
+.-.++.|+|.+|+|||||+..++-..+.. ..=..++|++-...+++.+ +.++++..+...... .+ ... +
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCC
Confidence 346788999999999999998886432211 1123467998877777776 445565554432100 00 111 3
Q ss_pred HHHHHHHH---HHHc-cCCeEEEEEeCCCC
Q 016120 278 YQLKKSIL---RDYL-TNKKYFIVLDDVFD 303 (394)
Q Consensus 278 ~~~~~~~l---~~~l-~~kr~LlVlDdv~~ 303 (394)
.+++...+ ...+ .++--|||+|-+..
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 33333333 3333 34556999999865
No 409
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.07 E-value=0.045 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 410
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.07 E-value=0.09 Score=55.53 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=33.3
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...|-.++=+|+||.--+ +...-..+...+..-. + .||++|.+.......
T Consensus 165 v~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~-tvlivsHd~~~l~~~ 219 (635)
T PRK11147 165 AALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G-SIIFISHDRSFIRNM 219 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C-EEEEEeCCHHHHHHh
Confidence 344445556677999999877 4444444555544332 4 588888888766655
No 411
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.05 E-value=0.021 Score=54.62 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccc-CcCHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVII-GEDYQLKKSILR 286 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~-~~~~~~~~~~l~ 286 (394)
.-+++-|+|+.|+||||||..+.. +.+..-..++|+.....+++.. +..++.....---. +++.++..+...
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 456899999999999999998887 4544456789999888877644 45555432210000 114555666666
Q ss_pred HHcc-CCeEEEEEeCCCC
Q 016120 287 DYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 287 ~~l~-~kr~LlVlDdv~~ 303 (394)
..++ +.--++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 6664 4456899999865
No 412
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.05 E-value=0.0097 Score=58.03 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=65.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccccc---ccCe------------eEEEEeCCCC------C----------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKF---YFDC------------LAWVRVSIAY------D---------------- 252 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~------------~~wv~vs~~~------~---------------- 252 (394)
.+++|+|+.|+|||||.+.+..-..... .|+. +..+ .+++ +
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v--~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE--eCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 4889999999999999999975321100 0110 1111 1111 1
Q ss_pred --HHHHHHHHHHHhCCCCCCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEE
Q 016120 253 --FGKMLDDIIKSVMPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRV 324 (394)
Q Consensus 253 --~~~i~~~i~~~l~~~~~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~I 324 (394)
...-..++++.++........... +. +...-.+...|..++=+++||+--. +...-..+...+.. ...|..+
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tv 188 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT 188 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 112234455555543221112222 22 2223344555556677888998766 33333444433332 1236678
Q ss_pred EEecCChHHHhhc
Q 016120 325 LITVTDPDLLASL 337 (394)
Q Consensus 325 ivTTR~~~v~~~~ 337 (394)
|++|.+.+.+..+
T Consensus 189 i~vTHd~~ea~~l 201 (353)
T TIGR03265 189 IMVTHDQEEALSM 201 (353)
T ss_pred EEEcCCHHHHHHh
Confidence 8888888766554
No 413
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.05 E-value=0.012 Score=57.70 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=33.0
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+++||+--. +...-..+...+... ..|..||++|.+...+..+
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~l 211 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTM 211 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444555667899999876 444444444444321 2366788888887765554
No 414
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.05 E-value=0.025 Score=47.73 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=74.5
Q ss_pred CccchhHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccc-cChHHHHHHHHHH
Q 016120 28 DSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDV-ERADILEILEDIN 106 (394)
Q Consensus 28 ~s~~l~p~~~~l~s~~~~~~~~ll~~~~~~~~~~l~~~~~~~l~~L~~~L~~i~~~~l~~ae~~~~-~~~~~~~Wl~~l~ 106 (394)
+++++|++++.|+... +. +.+-...++.-+++|..+++.|..+ +++.+..+. .+..-+.-++++.
T Consensus 7 ~gaalG~~~~eLlk~v-------~~------~~~k~~~fk~~l~~L~sTl~~i~P~-i~eI~~~~~eld~~~~ee~e~L~ 72 (147)
T PF05659_consen 7 GGAALGAVFGELLKAV-------ID------ASKKSLSFKSILKRLESTLESIIPI-IKEIDKLNVELDRPRQEEIERLK 72 (147)
T ss_pred HHHHHHHHHHHHHHHH-------HH------HHHHHHhhhhHHHHHHHHHHHhhhH-HHHHHHHhhhcCCchhHHHHHHH
Confidence 3667777777766652 11 1123466788899999999999999 988887643 2333378899999
Q ss_pred HHhhhhHhHhhhhHHhhhhcCCcceeccccchhhHHHHHHHHHHHHHHHhhccC
Q 016120 107 DFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLP 160 (394)
Q Consensus 107 ~~a~d~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~i~~~l~~l~ 160 (394)
+...++++++++|..- ...++...++.+++|+++.+.+....
T Consensus 73 ~~L~~g~~LV~k~sk~------------~r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 73 ELLEKGKELVEKCSKV------------RRWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHHHhccc------------cHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 9999999999999522 12344455666777777777776543
No 415
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.074 Score=51.17 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.+..
T Consensus 52 Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 416
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.04 E-value=0.059 Score=55.45 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=34.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|....+.++++.+..-...-.-|.|+|..|+||+++|+.+++
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 789998888888777743211233466999999999999999876
No 417
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.088 Score=49.76 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=32.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++-+|+||.-.. +...-..+...+..- ..|..||++|.+.+.+...
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~ 211 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEY 211 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 34445556678999999877 333333333333221 2477788888887755444
No 418
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.04 E-value=0.069 Score=54.70 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~l~G~NGsGKSTLl~~l~G 52 (501)
T PRK10762 30 GRVMALVGENGAGKSTMMKVLTG 52 (501)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 419
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.04 E-value=0.008 Score=58.40 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=65.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
...+.|.|+.|+||||+.+.+.+ .+..+...+++. +.++... ........+. .. +.+.+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~-q~----evg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNKRSLIN-QR----EVGLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCccceEE-cc----ccCCCCcCHHHHHHHh
Confidence 46899999999999999998877 344444455554 2221110 0000000000 00 0111223355667777
Q ss_pred ccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 289 LTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 289 l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
|+..+=.|++|.+.+ .+.+...... ...|..|+.|+-..++....
T Consensus 192 lr~~pd~i~vgEird-~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~~~ 236 (343)
T TIGR01420 192 LREDPDVILIGEMRD-LETVELALTA---AETGHLVFGTLHTNSAAQTI 236 (343)
T ss_pred hccCCCEEEEeCCCC-HHHHHHHHHH---HHcCCcEEEEEcCCCHHHHH
Confidence 888888999999998 7666543332 24466677777765555433
No 420
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.03 E-value=0.018 Score=58.89 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcc-ccccc-----CeeEEEEeCC-C--------------C-C-HHHHHHHHHHHhC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDH-VKFYF-----DCLAWVRVSI-A--------------Y-D-FGKMLDDIIKSVM 265 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F-----~~~~wv~vs~-~--------------~-~-~~~i~~~i~~~l~ 265 (394)
-..|+|+|+.|+|||||.+.+..... ..... -...++.-.. . + + ...-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 34789999999999999999955211 11100 0111221111 0 0 0 1233344444444
Q ss_pred CCCCCc-cccCc--CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhc
Q 016120 266 PPSRVS-VIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEME 340 (394)
Q Consensus 266 ~~~~~~-~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~ 340 (394)
-..... ..+.. .-+...-.|...+-.++=+||||.=-+ +.+..+.|..+|..- +|+ ||+.|.++.....+
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~v--- 502 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRV--- 502 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhh---
Confidence 332211 12222 223334445555667888999999877 555666666666443 355 88889999888877
Q ss_pred CCCceee
Q 016120 341 NGEKIRR 347 (394)
Q Consensus 341 ~~~~~~~ 347 (394)
+..++.
T Consensus 503 -a~~i~~ 508 (530)
T COG0488 503 -ATRIWL 508 (530)
T ss_pred -cceEEE
Confidence 355555
No 421
>PRK06547 hypothetical protein; Provisional
Probab=96.02 E-value=0.0095 Score=51.87 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999863
No 422
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.02 E-value=0.0042 Score=55.44 Aligned_cols=22 Identities=23% Similarity=0.033 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHh
Q 016120 209 LAVVAILDSSGFDKTVFTADTY 230 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~ 230 (394)
-+++.|.|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999987
No 423
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.02 E-value=0.088 Score=47.83 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=63.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV----------------- 270 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------------- 270 (394)
.-..+.|.|.+|+||||||..+.... . ..-..++|++.... ...+... +.+++.....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45688999999999999998876421 1 22346678876433 3333332 2222221100
Q ss_pred --ccccCc-CHHHHHHHHHHHccC---CeEEEEEeCCCC----CchhHHH----HHhhCCCCCCCcEEEEecCC
Q 016120 271 --SVIIGE-DYQLKKSILRDYLTN---KKYFIVLDDVFD----NSEIWSD----LEELLPDDENGSRVLITVTD 330 (394)
Q Consensus 271 --~~~~~~-~~~~~~~~l~~~l~~---kr~LlVlDdv~~----~~~~~~~----l~~~l~~~~~gs~IivTTR~ 330 (394)
...... +.+++...+.+.++. +.-++|+|.+.. .+..-.. +...+ ...|..+++|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l--~~~~~tvil~~~~ 165 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVL--NRWNFTILLTSQY 165 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHH--HhCCCEEEEEecc
Confidence 000112 566677777766543 345889999864 1211111 22222 2457788888874
No 424
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.093 Score=49.61 Aligned_cols=54 Identities=7% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhh
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~ 336 (394)
-.+...|..++=+|+||+--. +......+...+... ..|..||++|.+.+.+..
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~ 210 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAK 210 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 444555667788999999876 444445554444322 236668888888765543
No 425
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.11 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|+|||||.+.+..
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5889999999999999999985
No 426
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.01 E-value=0.061 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|.|||||++.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 427
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.065 Score=50.45 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=34.2
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++-+++||.--. +......+...+..- ..|..||++|.+.+.+..+
T Consensus 154 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~ 211 (280)
T PRK13633 154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEA 211 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcC
Confidence 34444556778999999876 455555555555432 2466788888887665543
No 428
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.085 Score=53.87 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLFG 46 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHcC
Confidence 5899999999999999999975
No 429
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.00 E-value=0.068 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.+++|+|..|.|||||.+.+..-
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999753
No 430
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.99 E-value=0.093 Score=49.01 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||++.++.
T Consensus 46 Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 46 NKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35889999999999999999986
No 431
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.1 Score=51.77 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...|..++=+|+||.--. +...-..+...+... ..|..||++|.+.+.+..+
T Consensus 175 LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 175 LARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 3444555677899999876 444434444444321 2366788888887765544
No 432
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.12 Score=48.32 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+|+||+--. +......+...+.....+..||++|.+.+.....
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~ 228 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARV 228 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhh
Confidence 3444555677899999876 4444444444443222245688888887665444
No 433
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.95 E-value=0.0053 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
++.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999873
No 434
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.074 Score=50.12 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++=+|+||+-.. +......+...+..- ..|..||++|.+.+....+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~ 210 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMA 210 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 34444556778999999887 555555555555432 2366788888887665533
No 435
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.94 E-value=0.054 Score=50.59 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++=+++||+--. +...-..+...+..- ..|..||++|.+.+....+
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~ 216 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHI 216 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh
Confidence 4444556778899999877 444434444444332 2356688888877665544
No 436
>PHA02244 ATPase-like protein
Probab=95.93 E-value=0.027 Score=54.61 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+..++..+ . -|.|+|+.|+|||+||+.+++
T Consensus 110 ~ri~r~l~~~---~-PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 110 ADIAKIVNAN---I-PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred HHHHHHHhcC---C-CEEEECCCCCCHHHHHHHHHH
Confidence 3455555432 3 356799999999999999988
No 437
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.93 E-value=0.086 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.211 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|.|||||.+.++.
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 438
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.92 E-value=0.12 Score=53.61 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=32.0
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++=+|+||.-.+ +...-..+...+.... + .||++|.+.+.+..+
T Consensus 174 la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~~~ 226 (556)
T PRK11819 174 LCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLDNV 226 (556)
T ss_pred HHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhh
Confidence 3344455667899999877 4444444544444332 4 588888888766655
No 439
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.92 E-value=0.11 Score=47.02 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|.|||||++.++.
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999975
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.92 E-value=0.0048 Score=66.05 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=61.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 287 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 287 (394)
+..++.|+|+.|.||||+.+.+.... .. ..+.++|++..... ...+.++...++......+... +...-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~-l~--aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LS-tfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLA-LM--FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLS-TFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHH-HH--HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhh-HHHHHHHHHHH
Confidence 34789999999999999998886520 00 11111222221100 0112222222221111000111 11111122333
Q ss_pred Hcc--CCeEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 288 YLT--NKKYFIVLDDVFD--NSEIWSDL----EELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 288 ~l~--~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
.+. +.+-|++||..-. ++.....+ ...+. ..|+.+|+||....+....
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALM 451 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 332 4789999999987 44443333 22332 3578899999998876654
No 441
>PRK13409 putative ATPase RIL; Provisional
Probab=95.92 E-value=0.055 Score=56.47 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.+..
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35999999999999999999976
No 442
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.92 E-value=0.091 Score=49.30 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=32.7
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++=+++||+--. +...-..+...+.. ...|..||++|.+.+....+
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~ 202 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDA 202 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhC
Confidence 34445566778999999876 34333334333322 12467788888887766543
No 443
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.91 E-value=0.064 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|.|||||.+.++.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 444
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.90 E-value=0.12 Score=52.28 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=35.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.++|......++.+.+..-......+.|.|.+|+|||++|+.+++.
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 6888888877777766543333455779999999999999999874
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.065 Score=48.87 Aligned_cols=125 Identities=20% Similarity=0.215 Sum_probs=67.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCc------------cc----------ccccCeeEEEEeCCCCC------------HHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNND------------HV----------KFYFDCLAWVRVSIAYD------------FGK 255 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~------------~~----------~~~F~~~~wv~vs~~~~------------~~~ 255 (394)
-.++|+|++|+|||||-+.+.-=. .+ -+++..--|-+|-+|-. ...
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~ 109 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE 109 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence 488999999999999999996311 11 11222333654443221 234
Q ss_pred HHHHHHHHhCCCCCCcc---ccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--C----chhHHHHHhhCCCCCCCcEEEE
Q 016120 256 MLDDIIKSVMPPSRVSV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--N----SEIWSDLEELLPDDENGSRVLI 326 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~----~~~~~~l~~~l~~~~~gs~Iiv 326 (394)
...++++..+....... .++....+.. .+.+.|..++=+|.||.=.. | ..-.+.+..... ..+..|++
T Consensus 110 ~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV-aiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~--~~~~Tvll 186 (248)
T COG1116 110 RAKELLELVGLAGFEDKYPHQLSGGMRQRV-AIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE--ETRKTVLL 186 (248)
T ss_pred HHHHHHHHcCCcchhhcCccccChHHHHHH-HHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH--hhCCEEEE
Confidence 56667777766543221 1111333333 34445556666778887654 1 112233333322 23456777
Q ss_pred ecCChHHHhhc
Q 016120 327 TVTDPDLLASL 337 (394)
Q Consensus 327 TTR~~~v~~~~ 337 (394)
.|.+-+-|-.+
T Consensus 187 VTHdi~EAv~L 197 (248)
T COG1116 187 VTHDVDEAVYL 197 (248)
T ss_pred EeCCHHHHHhh
Confidence 77776666665
No 446
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.89 E-value=0.016 Score=52.94 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.|+|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999977
No 447
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.88 E-value=0.1 Score=51.77 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
-.+...|-.++-+|+||+--. +...-..+...+..- ..|..||++|.+.+.+...
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ 205 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARY 205 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 344455667788899999766 332222232222211 2356799999988777554
No 448
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.87 E-value=0.071 Score=48.92 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=85.7
Q ss_pred ccceecccHHH---HHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREE---LFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~---i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
+++|.++.+.+ |++.|.+. +-..+-|..+|++|.|||.+|+.+.| +.+..|- -|.. .
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~l---~vka------t----- 185 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPLL---LVKA------T----- 185 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCceE---Eech------H-----
Confidence 88998765543 55666554 24567888999999999999999999 4444431 1110 1
Q ss_pred HHHHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC---C----------chhHHHHHhhCCC--CCCCcE
Q 016120 260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD---N----------SEIWSDLEELLPD--DENGSR 323 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~---~----------~~~~~~l~~~l~~--~~~gs~ 323 (394)
+-+|..-. +-......+.+.. +.-+|.+.||.+.. + .+..+.|..-+.. .+.|-.
T Consensus 186 --~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 --ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11111111 2233333333333 34689999999864 0 1112223322221 234555
Q ss_pred EEEecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 324 VLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 324 IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
-|-.|.+++.....-.+.-..-++ ...- +++|-..++.+.+...|
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIE-----F~LP--~~eEr~~ile~y~k~~P 301 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIE-----FKLP--NDEERLEILEYYAKKFP 301 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheee-----eeCC--ChHHHHHHHHHHHHhCC
Confidence 555566555444331112234444 5545 77888888887765444
No 449
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.11 Score=53.73 Aligned_cols=127 Identities=12% Similarity=0.165 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccc-cc--ccC---eeEEEEeCC------CCCHHH-------------HHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHV-KF--YFD---CLAWVRVSI------AYDFGK-------------MLDDIIKS 263 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---~~~wv~vs~------~~~~~~-------------i~~~i~~~ 263 (394)
-.+++|+|+.|+|||||.+.++.-..- .. .|+ ...++.-.. ...+.. -...++..
T Consensus 345 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~ 424 (530)
T PRK15064 345 GERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGR 424 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHH
Confidence 358899999999999999999863110 00 121 122221110 011111 12334444
Q ss_pred hCCCC-CCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 264 VMPPS-RVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 264 l~~~~-~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
++... ........ +. +...-.+...+-.++-+|+||.--+ |...-+.+...+..- .+ .||++|.+...+...
T Consensus 425 ~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vsHd~~~~~~~ 501 (530)
T PRK15064 425 LLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDREFVSSL 501 (530)
T ss_pred cCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC-EEEEEeCCHHHHHHh
Confidence 44321 10111222 22 2222334444556778999999877 444444444444332 24 588888888776655
No 450
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.0099 Score=50.45 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPP 267 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 267 (394)
+|+|-|++|+||||+|+.+.++..... | +...++++|+...+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-------V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-------e------eccHHHHHHHHHcCCC
Confidence 689999999999999999988432221 1 2346778888777664
No 451
>PRK14527 adenylate kinase; Provisional
Probab=95.86 E-value=0.022 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++.|+|++|+||||+|+.+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 452
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.022 Score=58.86 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHH---
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSI--- 284 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~--- 284 (394)
..+-|.|.|..|+|||+||+.+++... +.+.-.+..|+.+.--. . ..+..+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~-~----------------------~~e~iQk~l~~ 485 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDG-S----------------------SLEKIQKFLNN 485 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccc-h----------------------hHHHHHHHHHH
Confidence 456778999999999999999998433 44444455665543211 0 22223333
Q ss_pred -HHHHccCCeEEEEEeCCCC
Q 016120 285 -LRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 285 -l~~~l~~kr~LlVlDdv~~ 303 (394)
..+.+...+-++||||+.-
T Consensus 486 vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 486 VFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHHHHhhCCcEEEEcchhh
Confidence 3334456789999999964
No 453
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.093 Score=53.80 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 31 GEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 454
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.83 E-value=0.019 Score=56.12 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=33.7
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
+...|...+-+|++|+--. ++.....+...+... ..|..||++|.+.+.+..+
T Consensus 140 lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~ 196 (363)
T TIGR01186 140 LARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI 196 (363)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 4445566778899999877 555555555444322 2356688888888765544
No 455
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.064 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||.+.++.
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~G 57 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTG 57 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999975
No 456
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.094 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||++.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34889999999999999999973
No 457
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.093 Score=49.08 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||++.+..
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999975
No 458
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.83 E-value=0.047 Score=57.70 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=36.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.++|....+.++.+.+..--....-|.|+|..|+||+++|+.+++.
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 7889888888887777543223334679999999999999999873
No 459
>PRK03839 putative kinase; Provisional
Probab=95.82 E-value=0.0063 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.|.|+|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 460
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.077 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|.|||||.+.+..
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 461
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.82 E-value=0.11 Score=53.38 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=32.3
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~ 337 (394)
+...|..++=+|+||.-.. +...-..+...+.. ...|..||++|.+...+...
T Consensus 179 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~ 235 (520)
T TIGR03269 179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235 (520)
T ss_pred HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 3444555677999999876 44444444333322 12366688889888776654
No 462
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.82 E-value=0.043 Score=54.73 Aligned_cols=91 Identities=14% Similarity=0.207 Sum_probs=49.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCC-C-ccccCc-----CHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSR-V-SVIIGE-----DYQLKK 282 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-~-~~~~~~-----~~~~~~ 282 (394)
..++|+|..|+|||||++.+.... .....++|..-...-++..+....+.......- . .+.-+. -.....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 478999999999999999887632 122344554433334444444444333211000 0 000000 112223
Q ss_pred HHHHHHc--cCCeEEEEEeCCCC
Q 016120 283 SILRDYL--TNKKYFIVLDDVFD 303 (394)
Q Consensus 283 ~~l~~~l--~~kr~LlVlDdv~~ 303 (394)
-.+.+++ +++..|+++||+-.
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHH
Confidence 3344554 57999999999854
No 463
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.82 E-value=0.012 Score=57.12 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=80.3
Q ss_pred ccceecccHHHHHHHHhcCC---------------CCceEEEEEcCCCccHHHHHHHHhcCcccc--cccC---eeEEEE
Q 016120 187 DINEFERGREELFDLLIEGP---------------SGLAVVAILDSSGFDKTVFTADTYNNDHVK--FYFD---CLAWVR 246 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~---~~~wv~ 246 (394)
+..|...+...|.+...... ..-.+++|+|.+|.||||+.+.+....... +.|. ..+=+.
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 55666667777766654321 233488999999999999999887532111 1111 111110
Q ss_pred -------e----CCCCCHHHHHHHHH-------------HHhCCCCCCc--cccCc--CHHHHHHHHHHHccCCeEEEEE
Q 016120 247 -------V----SIAYDFGKMLDDII-------------KSVMPPSRVS--VIIGE--DYQLKKSILRDYLTNKKYFIVL 298 (394)
Q Consensus 247 -------v----s~~~~~~~i~~~i~-------------~~l~~~~~~~--~~~~~--~~~~~~~~l~~~l~~kr~LlVl 298 (394)
+ ...++-..++..+. +..+.....- ..+.. +-+.-..+|...+..+.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 0 11222223333333 3333222110 11222 3333456677788888888888
Q ss_pred eCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 299 DDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 299 Ddv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
|.... +...--.+...+... ..|+.+++.|+++++.+.+
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL 574 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhcc
Confidence 88755 222212222222221 3578888888889998888
No 464
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.81 E-value=0.0042 Score=54.77 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=58.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT 290 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 290 (394)
++.|.|+.|.||||+.+.+.-.. +..+-.+.+|. .. . ......+++..++......+..+ +...-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a--~~-~-~~~~~d~il~~~~~~d~~~~~~s-~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPA--ES-A-ELPVFDRIFTRIGASDSLAQGLS-TFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeee--hh-e-EecccceEEEEeCCCCchhcccc-HHHHHHHHHHHHHH
Confidence 46799999999999999887321 11111111111 10 0 00011111111211111000111 22222334455554
Q ss_pred C--CeEEEEEeCCCC--CchhHHH----HHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 291 N--KKYFIVLDDVFD--NSEIWSD----LEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 291 ~--kr~LlVlDdv~~--~~~~~~~----l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
. ++-|+++|..-. +...-.. +...+.. ..|+.+|++|.+.++...+
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 3 789999999976 3322222 2222322 2367899999998877766
No 465
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.80 E-value=0.0081 Score=53.90 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 201 LLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 201 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
|+.++......+.|+|++|+|||||++.+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4445545678889999999999999999975
No 466
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.80 E-value=0.092 Score=48.62 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=31.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
+...+..++=+++||+--. +...-+.+...+... ..|..||++|.+.......
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~ 204 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRY 204 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence 3444555678899999876 444444444444321 2356688888887654443
No 467
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.80 E-value=0.046 Score=53.59 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccC
Q 016120 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIG 275 (394)
Q Consensus 196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~ 275 (394)
.++-+.|..+=..-.++.|.|.+|+|||||+..++.. ....-..++|++.... ...+ ..-+..++.......-..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~ 143 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLA 143 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEc
Confidence 3333444332223468899999999999999988763 3222345677765433 3332 222445554322110112
Q ss_pred c-CHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120 276 E-DYQLKKSILRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 276 ~-~~~~~~~~l~~~l~~kr~LlVlDdv~~ 303 (394)
. +.+.+.+.+. ..+.-++|+|.+..
T Consensus 144 e~~le~I~~~i~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 144 ETNLEDILASIE---ELKPDLVIIDSIQT 169 (372)
T ss_pred cCcHHHHHHHHH---hcCCcEEEEcchHH
Confidence 2 4444444432 24667899999864
No 468
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.80 E-value=0.1 Score=48.29 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=32.3
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++-+++||+--. +...-..+...+.. ...|..||++|.+.......
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~ 215 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLL 215 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34444556777889999876 33333334333322 12366788888887766544
No 469
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.12 Score=47.82 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=31.8
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +......+...+.....|..||++|.+......+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARA 212 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence 3344455678899999876 4444444443333222356788888887665544
No 470
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.79 E-value=0.15 Score=44.73 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=38.5
Q ss_pred HHHHHHHHHccCCeEEEEEeCCCC--C-chhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 280 LKKSILRDYLTNKKYFIVLDDVFD--N-SEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 280 ~~~~~l~~~l~~kr~LlVlDdv~~--~-~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+..-.+...+-+++-+|+=|.=-. + ...|+-+.-.-.-+..|+.|+++|.+.++...+
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 333445555667788888886433 2 445655443333456799999999999988888
No 471
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.79 E-value=0.0077 Score=52.79 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 472
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.09 Score=49.33 Aligned_cols=60 Identities=8% Similarity=0.106 Sum_probs=36.9
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceee
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
.+...+-.++=+|+||+--. +....+.+...+..-..+..||++|.+....... .++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~----~d~i~~ 232 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRV----ADWTAF 232 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh----CCEEEE
Confidence 34444556778899999876 4444444444443222346789999988766655 355655
No 473
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.78 E-value=0.096 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999998877765
No 474
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.78 E-value=0.13 Score=48.88 Aligned_cols=128 Identities=12% Similarity=0.144 Sum_probs=66.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccc-c---cc------------CeeEEEEeCC----CCCHH---------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVK-F---YF------------DCLAWVRVSI----AYDFG--------------- 254 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~---~F------------~~~~wv~vs~----~~~~~--------------- 254 (394)
.++++.|+.|.|||||.+.+..-.+-. . -+ ..+.++.-.. ..++.
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 589999999999999999997631100 0 00 0122221111 11222
Q ss_pred ---HHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCC-cEEE
Q 016120 255 ---KMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENG-SRVL 325 (394)
Q Consensus 255 ---~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~g-s~Ii 325 (394)
.-..++++.++........+.. +... ..-.+...|-+++=+++||.--+ |+..-..+...+..- ..| ..|+
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvl 191 (293)
T COG1131 112 EAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTIL 191 (293)
T ss_pred HHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 2344555555555311111222 2211 12233444566778999999776 333323333322221 223 5799
Q ss_pred EecCChHHHhhc
Q 016120 326 ITVTDPDLLASL 337 (394)
Q Consensus 326 vTTR~~~v~~~~ 337 (394)
+||....-+..+
T Consensus 192 issH~l~e~~~~ 203 (293)
T COG1131 192 LSTHILEEAEEL 203 (293)
T ss_pred EeCCcHHHHHHh
Confidence 999988766665
No 475
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.77 E-value=0.11 Score=53.31 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|..|+|||||++.++.
T Consensus 289 Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 289 GEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 45899999999999999999975
No 476
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.14 Score=47.81 Aligned_cols=169 Identities=21% Similarity=0.265 Sum_probs=98.9
Q ss_pred ccceecccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLIEG----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
++-|.+..++.|.+...-. ....+-|.++|++|.||+.||+.|... -... |.+||..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnST-----FFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCc-----eEEeehH------
Confidence 7888888888888776432 134778889999999999999999873 2232 3444443
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc-CCeEEEEEeCCCC-------C-chhHHHHHhhC-------CCCCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD-------N-SEIWSDLEELL-------PDDEN 320 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~-------~-~~~~~~l~~~l-------~~~~~ 320 (394)
++++...+ ..+.+...|.+..+ +|+-+|.+|.|.. + .+.-..+..-| .++..
T Consensus 201 --DLvSKWmG----------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 201 --DLVSKWMG----------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred --HHHHHHhc----------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 22222222 34556667766664 6889999999875 1 11222232211 12334
Q ss_pred CcEEEEecCChHHHhhchh-cCCCceeeCCccCCCCCCCChHHHHH-HHHHHhCCCCCCCCcCCCchhhhhhc
Q 016120 321 GSRVLITVTDPDLLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQ-FFILHYGSMPLENYLQGEAIPTVGDN 391 (394)
Q Consensus 321 gs~IivTTR~~~v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~-Lf~~~~~~~~~~~~~~~~~~~~vg~~ 391 (394)
|.-|+=.|..+-+....-. .-..++|- || ++..|.. +|.-+.|+.+ ....-..++++|+.
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYI-------PL--Pe~~AR~~MF~lhlG~tp--~~LT~~d~~eL~~k 330 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYI-------PL--PEAHARARMFKLHLGDTP--HVLTEQDFKELARK 330 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceec-------cC--CcHHHhhhhheeccCCCc--cccchhhHHHHHhh
Confidence 4444546766644433311 11345555 77 7777775 4444577654 23334566666654
No 477
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.77 E-value=0.21 Score=50.30 Aligned_cols=220 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhhhhHhHhhhhHHhhhhcCCcceeccccchhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCC---C
Q 016120 95 RADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISD---K 171 (394)
Q Consensus 95 ~~~~~~Wl~~l~~~a~d~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~i~~~l~~l~~~~~~~~~~~---~ 171 (394)
..+++.|.++=++ ....+|++-.+...... .+++.....+.++......-.-...+ -
T Consensus 316 ~~q~K~~~kqqk~-i~~~K~~ia~~g~g~a~-------------------~~rka~s~~K~~~km~~~gL~ek~~~~k~l 375 (614)
T KOG0927|consen 316 ENQMKAYEKQQKQ-IAHMKDLIARFGHGSAK-------------------LGRKAQSKEKTLDKMEADGLTEKVVGEKVL 375 (614)
T ss_pred HHHHHHHHHHHhH-HHHhhHHHHhhcccchh-------------------hhHHHhhhhhhHHHHhhccccccccCCceE
Q ss_pred CccccccCCCCCCCc----ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHH------------------
Q 016120 172 CNEIIHLLSEGQPRL----DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADT------------------ 229 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~----~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v------------------ 229 (394)
...-+.....++|.. .-+|.+..- .|...|..+-..-..+++||+.|+|||||.+.+
T Consensus 376 ~~~f~~vg~~p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~ 454 (614)
T KOG0927|consen 376 SFRFPEVGKIPPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK 454 (614)
T ss_pred EEEcccccCCCCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc
Q ss_pred --hcCcccccccCeeEEE-----EeCCCCCHHHHHHHHHHHhCCC-CCCccccCc-CHHHHHHHHHHHcc-CCeEEEEEe
Q 016120 230 --YNNDHVKFYFDCLAWV-----RVSIAYDFGKMLDDIIKSVMPP-SRVSVIIGE-DYQLKKSILRDYLT-NKKYFIVLD 299 (394)
Q Consensus 230 --~~~~~~~~~F~~~~wv-----~vs~~~~~~~i~~~i~~~l~~~-~~~~~~~~~-~~~~~~~~l~~~l~-~kr~LlVlD 299 (394)
+.++.....-+...|. ..-.+-...+..+.|+...+.. ..+...+.. +..+....+-.++. ..+-|||||
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Q ss_pred CCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 300 DVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 300 dv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
.-.+ +....+.+..++..-..| ||++|.+--+...+
T Consensus 535 EPtnhLDi~tid~laeaiNe~~Gg--vv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAEAINEFPGG--VVLVSHDFRLISQV 572 (614)
T ss_pred CCCcCCCchhHHHHHHHHhccCCc--eeeeechhhHHHHH
No 478
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.76 E-value=0.034 Score=48.24 Aligned_cols=122 Identities=9% Similarity=-0.010 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCee--EEEEeCCCCCHHHHHHHHH---HHhCCCCC-Ccccc--Cc-CHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCL--AWVRVSIAYDFGKMLDDII---KSVMPPSR-VSVII--GE-DYQ 279 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~--~wv~vs~~~~~~~i~~~i~---~~l~~~~~-~~~~~--~~-~~~ 279 (394)
...|-|++..|.||||.|..+... .....+.+. -|+.-........++.... ...+.... ...+. +. ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 357778888999999999777652 122223332 2443332333333333320 00000000 00000 00 223
Q ss_pred HHHHHHHHHccCCe-EEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120 280 LKKSILRDYLTNKK-YFIVLDDVFD----NSEIWSDLEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 280 ~~~~~l~~~l~~kr-~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~IivTTR~~ 331 (394)
...+..++.+...+ =|+|||.+-. ..-..+.+...+....++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34445555555444 5999999864 1333466777776667778999999985
No 479
>PRK04132 replication factor C small subunit; Provisional
Probab=95.76 E-value=0.13 Score=55.32 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=76.9
Q ss_pred CCCccHHHHHHHHhcCcccccccC-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEE
Q 016120 217 SSGFDKTVFTADTYNNDHVKFYFD-CLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYF 295 (394)
Q Consensus 217 ~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 295 (394)
|.++||||+|..++++. ..+.++ ..+-+++|....... .++++.......+ .-..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~------------------~~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKP------------------IGGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC------------------cCCCCCEE
Confidence 67889999999999841 122222 345667776544433 2333322211110 00124579
Q ss_pred EEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 296 IVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 296 lVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+|||++.. +....+.|...+-.-...+++|++|.+. .+...+ .+....++ +.++ +.++-...+.+.+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tI--rSRC~~i~-----F~~l--s~~~i~~~L~~I~ 702 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI--QSRCAIFR-----FRPL--RDEDIAKRLRYIA 702 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHH--hhhceEEe-----CCCC--CHHHHHHHHHHHH
Confidence 99999999 6667788877776544566666655544 454444 34567888 9999 9888877776653
No 480
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.11 Score=53.33 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~liG~nGsGKSTLl~~i~G 53 (510)
T PRK09700 31 GEIHALLGENGAGKSTLMKVLSG 53 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 35899999999999999999975
No 481
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.024 Score=55.76 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.++.
T Consensus 46 e~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5889999999999999999975
No 482
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.041 Score=55.20 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=36.2
Q ss_pred ccceec---ccHHHHHHHHhcCC-------CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFE---RGREELFDLLIEGP-------SGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~---~~~~~i~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
++-|.| .++++|++.|.+.. .=++=|.++|++|.|||-||+.+.-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 677866 47788888887652 22456779999999999999999883
No 483
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.73 E-value=0.11 Score=43.93 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
++.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 484
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.72 E-value=0.52 Score=43.24 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=84.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeC-CCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVS-IAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
+.+++.++|.-|.|||.+++.+..- .- .=+... |.+. +......+...|+..+..+... ......+.....|.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~-~d~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~--~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LN-EDQVAV-VVIDKPTLSDATLLEAIVADLESQPKV--NVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cC-CCceEE-EEecCcchhHHHHHHHHHHHhccCccc--hhHHHHHHHHHHHH
Confidence 4678999999999999999944331 11 111122 3333 3556778888888888773320 11113344445555
Q ss_pred HHc-cCCe-EEEEEeCCCC-CchhHHHHHhhCCCCCCCc----EEEE--ec-----CChHHHhhchhcCCCce-eeCCcc
Q 016120 287 DYL-TNKK-YFIVLDDVFD-NSEIWSDLEELLPDDENGS----RVLI--TV-----TDPDLLASLEMENGEKI-RRDSVL 351 (394)
Q Consensus 287 ~~l-~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs----~Iiv--TT-----R~~~v~~~~~~~~~~~~-~~~~~~ 351 (394)
+.. +++| ..++.|+..+ +.+..+.++....-...+| ++++ ++ |-+.....- ....+ |.
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~---~R~~ir~~---- 196 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE---QRIDIRIE---- 196 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh---heEEEEEe----
Confidence 554 4677 8999999988 5556665554332222222 2333 11 111111111 22334 77
Q ss_pred CCCCCCCChHHHHHHHHHHhC
Q 016120 352 FGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 352 ~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
+.|+ +.++.-.+++.+++
T Consensus 197 -l~P~--~~~~t~~yl~~~Le 214 (269)
T COG3267 197 -LPPL--TEAETGLYLRHRLE 214 (269)
T ss_pred -cCCc--ChHHHHHHHHHHHh
Confidence 9999 99888877777754
No 485
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.72 E-value=0.044 Score=47.07 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=33.1
Q ss_pred CeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhchhcCCCceee
Q 016120 292 KKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 292 kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
++-++++|+... +...-..+...+... ..|+.+|+||.+....... +.++.
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~-----d~~~~ 152 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA-----DKLIH 152 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh-----hhEEE
Confidence 678999999987 444333333333221 1267899999999887655 45555
No 486
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.71 E-value=0.1 Score=50.37 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=34.1
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|..++=+||+|.--. +......+...+..- ..|..||++|.+..++..+
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ 221 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHI 221 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 34444555677999999877 444444444444322 2366789999988777654
No 487
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.092 Score=48.06 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..++|+|..|+|||||++.+.-
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 34788999999999999999853
No 488
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.14 Score=48.25 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+-.++=+|+||+--. +......+...+..- ..|..||++|.+......+
T Consensus 150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~ 207 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQA 207 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence 33444556678999999877 455555555555422 2367788888887655543
No 489
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.70 E-value=0.023 Score=53.09 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=66.0
Q ss_pred ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120 189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS 268 (394)
Q Consensus 189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 268 (394)
.|......+.+..+... ...++.|.|..|+||||++..+.+ .+...-..++.+.-+..+....+ .++.
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~~-----~q~~--- 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPGI-----NQVQ--- 129 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCCc-----eEEE---
Confidence 34444333444444332 246889999999999999988865 22221112223321111111100 0110
Q ss_pred CCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 269 RVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 269 ~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+.. ........++..|+..+=.++++++.+ .+......... ..|..++-|....++....
T Consensus 130 -----v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~aa---~tGh~v~tTlHa~~~~~ai 190 (264)
T cd01129 130 -----VNEKAGLTFARGLRAILRQDPDIIMVGEIRD-AETAEIAVQAA---LTGHLVLSTLHTNDAPGAI 190 (264)
T ss_pred -----eCCcCCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHHHHHHH---HcCCcEEEEeccCCHHHHH
Confidence 111 112355666777777788899999999 65433333222 2355566666655544433
No 490
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.69 E-value=0.18 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCccHHH-HHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTV-FTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTt-LA~~v~~ 231 (394)
+-+++++||+.|||||| ||+..+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999995 7766654
No 491
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.67 E-value=0.0067 Score=53.93 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 492
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.67 E-value=0.13 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..++|+|..|+|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999864
No 493
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.66 E-value=0.11 Score=47.57 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+-.|+|++|+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999988875
No 494
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.66 E-value=0.17 Score=47.37 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...+-.++-+++||+--. +......+...+.....+..||++|.+.+.+...
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~ 233 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARV 233 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhh
Confidence 3344555678899999876 4444444444443222245688888887655443
No 495
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=95.65 E-value=0.085 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|.|||||.+.+..
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 496
>PRK05439 pantothenate kinase; Provisional
Probab=95.65 E-value=0.071 Score=50.80 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhc
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
....+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999998876
No 497
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.12 Score=52.96 Aligned_cols=132 Identities=10% Similarity=-0.003 Sum_probs=0.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE-------------------EeCCCCCH------------------
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV-------------------RVSIAYDF------------------ 253 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------------------~vs~~~~~------------------ 253 (394)
+++|+|+.|+|||||.+.+.. ........+++ .+.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G---l~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (501)
T PRK11288 32 VHALMGENGAGKSTLLKILSG---NYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK 108 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhC---CCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccc
Q ss_pred ---------HHHHHHHHHHhCCCCCCccccCc--CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-C
Q 016120 254 ---------GKMLDDIIKSVMPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-E 319 (394)
Q Consensus 254 ---------~~i~~~i~~~l~~~~~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~ 319 (394)
..-..++++.++........... .-+...-.+...+-.++-+++||+-.. +...-..+...+... .
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (501)
T PRK11288 109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Q ss_pred CCcEEEEecCChHHHhhchhcCCCceeeCCccCCC
Q 016120 320 NGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGG 354 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~ 354 (394)
.|..||++|.+...+... .++++. |.
T Consensus 189 ~g~tiiiitHd~~~~~~~----~d~i~~-----l~ 214 (501)
T PRK11288 189 EGRVILYVSHRMEEIFAL----CDAITV-----FK 214 (501)
T ss_pred CCCEEEEEeCCHHHHHHh----CCEEEE-----EE
No 498
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.64 E-value=0.16 Score=47.42 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
-.++.|.|.+|+||||++..+..+. ...+=..++|++... ....+...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHH
Confidence 3477899999999999998887632 122124567877654 33444444433
No 499
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.63 E-value=0.16 Score=51.35 Aligned_cols=133 Identities=11% Similarity=0.057 Sum_probs=68.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
.++|......++...+..-......+.|.|..|+||+++|+.+.... .......+-++...- ....+...+ ++.
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l--fg~ 208 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL--FGH 208 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh--cCC
Confidence 57777766677766664432233456799999999999999998732 111112222332222 223333222 221
Q ss_pred CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 016120 267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE-----------NGSRVLITVTDP 331 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 331 (394)
... .+..... ......-....-.|+||+|.. .......+...+..+. .+.+||.||...
T Consensus 209 ~~~---~~~~~~~---~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 209 EKG---AFTGANT---RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCC---CCCCccc---CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 111 0000000 000001112234589999988 5666677776665431 245788877643
No 500
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.63 E-value=0.075 Score=49.63 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=78.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+|+|-.. ..+++.++......-+.+.++|+.|+|||+-++.+++. .+..+-+..++.+....++..+......
T Consensus 73 ~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~ 145 (297)
T COG2842 73 DFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFG 145 (297)
T ss_pred cccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhc
Confidence 5555433 23344444433333348889999999999999999982 2333444777777777777777766655
Q ss_pred CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhC
Q 016120 267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELL 315 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l 315 (394)
... .........+...+.+..-+++.|+... ....++.+....
T Consensus 146 ~~~------~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 146 ATD------GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred ccc------hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 421 1677778888888888889999999887 566677776544
Done!