Query 016120
Match_columns 394
No_of_seqs 260 out of 2372
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 08:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.7E-28 9.3E-33 249.7 20.1 169 189-373 131-308 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.5E-24 5.3E-29 240.7 15.5 170 187-373 125-301 (1249)
3 1vt4_I APAF-1 related killer D 99.9 7E-24 2.4E-28 223.9 13.5 168 187-373 129-313 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 5.9E-21 2E-25 196.9 15.0 169 187-373 125-301 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.5 8.6E-14 2.9E-18 111.9 10.0 82 31-126 2-85 (115)
6 1w5s_A Origin recognition comp 99.4 2.1E-12 7.2E-17 126.5 12.6 172 187-371 23-228 (412)
7 2qby_B CDC6 homolog 3, cell di 99.3 2.5E-11 8.5E-16 117.8 12.0 172 187-371 21-210 (384)
8 2v1u_A Cell division control p 99.2 4.4E-11 1.5E-15 115.8 13.3 172 187-371 20-214 (387)
9 1fnn_A CDC6P, cell division co 99.2 2E-10 6.7E-15 111.4 17.1 172 187-371 18-206 (389)
10 2qby_A CDC6 homolog 1, cell di 99.2 2.4E-11 8.1E-16 117.5 10.3 172 187-371 21-210 (386)
11 2qen_A Walker-type ATPase; unk 99.2 8.3E-11 2.9E-15 112.2 12.3 167 187-372 13-217 (350)
12 2fna_A Conserved hypothetical 99.2 1.4E-10 4.9E-15 110.8 12.6 165 187-371 14-222 (357)
13 1njg_A DNA polymerase III subu 99.1 3.6E-10 1.2E-14 101.4 12.8 169 187-372 24-199 (250)
14 2chg_A Replication factor C sm 99.1 1.6E-09 5.6E-14 95.9 13.4 147 187-371 18-174 (226)
15 1sxj_B Activator 1 37 kDa subu 98.9 4.5E-09 1.5E-13 99.1 9.4 153 187-371 22-179 (323)
16 1iqp_A RFCS; clamp loader, ext 98.7 1.9E-08 6.6E-13 94.9 7.4 151 187-372 26-183 (327)
17 3te6_A Regulatory protein SIR3 98.7 3.4E-07 1.2E-11 86.3 14.9 174 187-372 21-212 (318)
18 1jbk_A CLPB protein; beta barr 98.6 4.4E-08 1.5E-12 84.4 6.7 44 187-232 23-66 (195)
19 1jr3_A DNA polymerase III subu 98.5 1E-06 3.6E-11 84.6 13.4 168 187-371 17-191 (373)
20 2chq_A Replication factor C sm 98.5 4.1E-07 1.4E-11 85.3 10.2 151 187-372 18-175 (319)
21 3h4m_A Proteasome-activating n 98.5 4.9E-07 1.7E-11 83.8 10.0 157 187-374 18-204 (285)
22 3syl_A Protein CBBX; photosynt 98.4 1.7E-06 5.7E-11 81.1 10.4 158 187-372 32-218 (309)
23 3n70_A Transport activator; si 98.3 1.7E-06 5.9E-11 71.9 8.2 113 187-330 2-115 (145)
24 2z4s_A Chromosomal replication 98.3 2.7E-06 9.2E-11 84.1 10.3 153 187-371 106-276 (440)
25 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.1E-05 3.7E-10 73.5 13.5 153 187-372 7-191 (262)
26 3bos_A Putative DNA replicatio 98.2 6.7E-07 2.3E-11 80.1 4.8 142 187-371 29-187 (242)
27 1sxj_E Activator 1 40 kDa subu 98.2 5.2E-06 1.8E-10 79.2 11.3 165 187-371 15-206 (354)
28 3u61_B DNA polymerase accessor 98.2 3.7E-06 1.3E-10 79.4 9.9 138 185-363 25-170 (324)
29 2p65_A Hypothetical protein PF 98.2 1.6E-06 5.6E-11 74.2 6.9 43 187-231 23-65 (187)
30 1hqc_A RUVB; extended AAA-ATPa 98.2 2.9E-06 9.8E-11 79.9 8.8 147 187-372 13-182 (324)
31 3pvs_A Replication-associated 98.2 5.3E-06 1.8E-10 82.1 10.8 145 187-372 27-179 (447)
32 3eie_A Vacuolar protein sortin 98.2 8.4E-06 2.9E-10 77.0 11.2 156 187-374 19-200 (322)
33 3cf0_A Transitional endoplasmi 98.2 1.8E-05 6.1E-10 74.1 12.8 157 187-374 16-202 (301)
34 3uk6_A RUVB-like 2; hexameric 98.2 2.5E-05 8.6E-10 74.8 14.0 46 187-232 45-93 (368)
35 1sxj_D Activator 1 41 kDa subu 98.1 3.3E-06 1.1E-10 80.4 7.6 164 187-371 38-205 (353)
36 1xwi_A SKD1 protein; VPS4B, AA 98.1 3.2E-05 1.1E-09 73.1 14.2 155 187-374 13-195 (322)
37 1d2n_A N-ethylmaleimide-sensit 98.1 1.5E-05 5E-10 73.3 11.4 152 187-369 34-210 (272)
38 2w58_A DNAI, primosome compone 98.1 2E-06 6.8E-11 75.4 4.7 95 187-303 26-126 (202)
39 1a5t_A Delta prime, HOLB; zinc 98.0 5.3E-05 1.8E-09 71.9 13.6 145 193-371 9-180 (334)
40 2gno_A DNA polymerase III, gam 98.0 2.7E-05 9.1E-10 73.1 11.3 147 190-371 1-152 (305)
41 3pfi_A Holliday junction ATP-d 98.0 1.7E-05 5.9E-10 75.2 10.0 146 187-372 30-198 (338)
42 3d8b_A Fidgetin-like protein 1 98.0 2.6E-05 8.9E-10 74.8 10.9 153 187-371 85-264 (357)
43 3co5_A Putative two-component 98.0 4.1E-06 1.4E-10 69.4 4.6 46 187-232 5-50 (143)
44 2qp9_X Vacuolar protein sortin 98.0 3.7E-05 1.3E-09 73.7 11.7 156 187-374 52-233 (355)
45 3ec2_A DNA replication protein 98.0 7.9E-06 2.7E-10 70.2 5.9 102 209-331 38-143 (180)
46 2zan_A Vacuolar protein sortin 98.0 7.1E-05 2.4E-09 73.9 13.6 156 187-373 135-316 (444)
47 1sxj_A Activator 1 95 kDa subu 98.0 1.5E-05 5.1E-10 80.4 8.8 161 187-371 40-222 (516)
48 2bjv_A PSP operon transcriptio 98.0 3.1E-05 1.1E-09 70.8 10.1 46 187-232 7-52 (265)
49 3vfd_A Spastin; ATPase, microt 98.0 7.9E-05 2.7E-09 72.2 13.4 153 187-372 116-296 (389)
50 1sxj_C Activator 1 40 kDa subu 97.9 3E-05 1E-09 73.7 9.9 147 187-371 26-182 (340)
51 3hu3_A Transitional endoplasmi 97.9 3.2E-05 1.1E-09 77.3 10.1 158 187-375 205-389 (489)
52 4fcw_A Chaperone protein CLPB; 97.9 4.2E-05 1.4E-09 71.4 9.4 117 187-315 18-143 (311)
53 4b4t_L 26S protease subunit RP 97.9 0.00014 4.8E-09 71.3 13.1 158 187-375 182-369 (437)
54 3b9p_A CG5977-PA, isoform A; A 97.8 0.00013 4.6E-09 67.6 12.2 45 187-231 22-76 (297)
55 1lv7_A FTSH; alpha/beta domain 97.8 0.00013 4.4E-09 66.3 11.8 156 187-373 13-197 (257)
56 1l8q_A Chromosomal replication 97.8 9E-05 3.1E-09 69.8 10.9 152 187-371 12-179 (324)
57 4b4t_J 26S protease regulatory 97.8 0.00012 4.2E-09 70.7 11.7 160 187-377 149-338 (405)
58 2r62_A Cell division protease 97.7 3.9E-05 1.3E-09 70.2 6.6 45 187-231 12-66 (268)
59 4b4t_H 26S protease regulatory 97.7 0.00025 8.7E-09 69.5 12.6 162 187-379 210-401 (467)
60 1qvr_A CLPB protein; coiled co 97.7 8.6E-05 2.9E-09 79.4 9.9 43 187-231 171-213 (854)
61 1ojl_A Transcriptional regulat 97.7 0.00023 7.8E-09 66.6 10.9 46 187-232 3-48 (304)
62 2ce7_A Cell division protein F 97.7 0.00034 1.2E-08 69.4 12.6 157 187-374 17-202 (476)
63 3pxg_A Negative regulator of g 97.6 9.9E-05 3.4E-09 73.4 8.2 43 187-231 181-223 (468)
64 1ofh_A ATP-dependent HSL prote 97.6 0.00015 5.2E-09 67.3 9.0 45 187-231 16-72 (310)
65 4b4t_M 26S protease regulatory 97.6 0.00019 6.5E-09 70.3 9.6 156 187-373 182-367 (434)
66 2kjq_A DNAA-related protein; s 97.6 6.3E-05 2.1E-09 62.7 4.8 24 209-232 36-59 (149)
67 4b4t_I 26S protease regulatory 97.5 0.00054 1.8E-08 66.6 11.7 160 187-377 183-372 (437)
68 3pxi_A Negative regulator of g 97.5 0.00029 9.9E-09 74.3 10.8 152 187-370 492-674 (758)
69 4b4t_K 26S protease regulatory 97.5 0.0003 1E-08 68.8 10.0 92 187-302 173-275 (428)
70 2cvh_A DNA repair and recombin 97.5 0.00029 9.8E-09 62.0 9.0 89 209-303 20-116 (220)
71 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0013 4.3E-08 69.4 13.8 155 187-370 187-361 (758)
72 3cf2_A TER ATPase, transitiona 97.4 0.0012 4E-08 69.6 13.0 157 187-375 205-389 (806)
73 2x8a_A Nuclear valosin-contain 97.4 0.0048 1.6E-07 56.6 15.9 153 187-372 11-192 (274)
74 1ypw_A Transitional endoplasmi 97.4 0.00093 3.2E-08 70.8 11.8 158 187-375 205-389 (806)
75 3pxi_A Negative regulator of g 97.4 0.00035 1.2E-08 73.7 8.4 43 187-231 181-223 (758)
76 2r44_A Uncharacterized protein 97.3 0.00048 1.6E-08 64.9 8.5 153 187-373 28-200 (331)
77 2qgz_A Helicase loader, putati 97.3 6.6E-05 2.2E-09 70.5 1.7 52 194-247 136-189 (308)
78 1ixz_A ATP-dependent metallopr 97.3 0.0052 1.8E-07 55.3 14.3 44 187-231 17-71 (254)
79 1qvr_A CLPB protein; coiled co 97.2 0.00098 3.3E-08 71.2 10.2 132 187-330 559-710 (854)
80 2c9o_A RUVB-like 1; hexameric 97.2 0.0015 5.3E-08 64.5 10.8 45 187-231 38-85 (456)
81 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0011 3.9E-08 69.8 10.2 45 187-231 459-510 (758)
82 3m6a_A ATP-dependent protease 97.2 0.00055 1.9E-08 69.3 7.4 45 187-231 82-130 (543)
83 3t15_A Ribulose bisphosphate c 97.1 0.0013 4.4E-08 61.1 8.7 24 208-231 35-58 (293)
84 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00048 1.6E-08 64.5 5.3 69 209-303 123-193 (331)
85 1um8_A ATP-dependent CLP prote 97.1 0.0019 6.6E-08 62.0 9.7 45 187-231 22-94 (376)
86 1iy2_A ATP-dependent metallopr 97.1 0.0025 8.7E-08 58.4 10.0 44 187-231 41-95 (278)
87 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0032 1.1E-07 62.9 11.2 152 187-373 32-216 (499)
88 1vpl_A ABC transporter, ATP-bi 97.0 0.0049 1.7E-07 56.0 11.3 129 209-337 41-212 (256)
89 3hr8_A Protein RECA; alpha and 97.0 0.0019 6.7E-08 61.5 8.7 89 208-303 60-150 (356)
90 2pjz_A Hypothetical protein ST 97.0 0.0043 1.5E-07 56.6 10.6 124 210-337 31-191 (263)
91 4g1u_C Hemin import ATP-bindin 96.9 0.0065 2.2E-07 55.5 11.5 127 210-337 38-214 (266)
92 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0025 8.5E-08 56.2 8.3 117 210-331 24-168 (235)
93 2nq2_C Hypothetical ABC transp 96.9 0.0032 1.1E-07 57.2 9.1 128 210-337 32-195 (253)
94 2pcj_A ABC transporter, lipopr 96.9 0.011 3.8E-07 52.4 12.2 126 210-335 31-204 (224)
95 2onk_A Molybdate/tungstate ABC 96.9 0.0036 1.2E-07 56.3 8.8 128 210-337 25-193 (240)
96 2b8t_A Thymidine kinase; deoxy 96.8 0.00053 1.8E-08 61.1 3.2 110 209-329 12-124 (223)
97 1ye8_A Protein THEP1, hypothet 96.8 0.009 3.1E-07 51.0 10.7 68 289-365 96-170 (178)
98 2pze_A Cystic fibrosis transme 96.8 0.034 1.2E-06 49.4 14.9 53 285-337 141-196 (229)
99 3io5_A Recombination and repai 96.8 0.0056 1.9E-07 57.1 9.9 87 210-303 29-122 (333)
100 4gp7_A Metallophosphoesterase; 96.8 0.0014 4.9E-08 55.6 5.4 54 284-337 93-165 (171)
101 2olj_A Amino acid ABC transpor 96.8 0.0096 3.3E-07 54.3 11.3 54 284-337 169-225 (263)
102 1sgw_A Putative ABC transporte 96.8 0.0026 8.8E-08 56.2 7.0 127 210-337 36-199 (214)
103 3tif_A Uncharacterized ABC tra 96.8 0.0096 3.3E-07 53.3 10.9 54 284-337 155-212 (235)
104 2qi9_C Vitamin B12 import ATP- 96.7 0.0057 1.9E-07 55.3 9.3 22 210-231 27-48 (249)
105 2cbz_A Multidrug resistance-as 96.7 0.013 4.5E-07 52.4 11.5 51 286-336 139-194 (237)
106 2zr9_A Protein RECA, recombina 96.7 0.004 1.4E-07 59.2 8.5 88 209-303 61-150 (349)
107 3gfo_A Cobalt import ATP-bindi 96.7 0.0056 1.9E-07 56.2 9.1 22 210-231 35-56 (275)
108 3tui_C Methionine import ATP-b 96.7 0.011 3.8E-07 56.4 11.4 129 209-337 54-230 (366)
109 2yz2_A Putative ABC transporte 96.7 0.0069 2.4E-07 55.3 9.5 54 284-337 148-204 (266)
110 3d31_A Sulfate/molybdate ABC t 96.7 0.0089 3E-07 56.8 10.5 126 210-337 27-194 (348)
111 1n0w_A DNA repair protein RAD5 96.7 0.0064 2.2E-07 54.0 9.1 94 209-303 24-130 (243)
112 2z43_A DNA repair and recombin 96.7 0.0052 1.8E-07 57.8 8.9 94 209-303 107-214 (324)
113 1ji0_A ABC transporter; ATP bi 96.6 0.011 3.6E-07 53.2 10.1 22 210-231 33-54 (240)
114 1z47_A CYSA, putative ABC-tran 96.6 0.0092 3.1E-07 56.8 9.7 128 210-337 42-212 (355)
115 1xp8_A RECA protein, recombina 96.6 0.0066 2.3E-07 58.1 8.8 88 209-303 74-163 (366)
116 2ixe_A Antigen peptide transpo 96.5 0.02 6.9E-07 52.3 11.6 53 284-336 166-222 (271)
117 1u94_A RECA protein, recombina 96.5 0.0056 1.9E-07 58.4 8.1 88 209-303 63-152 (356)
118 1g5t_A COB(I)alamin adenosyltr 96.5 0.0021 7.1E-08 55.8 4.5 117 209-331 28-163 (196)
119 3c8u_A Fructokinase; YP_612366 96.5 0.002 6.9E-08 56.4 4.5 38 194-231 7-44 (208)
120 2it1_A 362AA long hypothetical 96.5 0.018 6.1E-07 55.0 11.0 129 209-337 29-200 (362)
121 1b0u_A Histidine permease; ABC 96.4 0.0098 3.3E-07 54.2 8.9 23 209-231 32-54 (262)
122 2i1q_A DNA repair and recombin 96.4 0.0079 2.7E-07 56.4 8.5 95 208-303 97-215 (322)
123 1v5w_A DMC1, meiotic recombina 96.4 0.023 8E-07 53.8 11.5 95 208-303 121-230 (343)
124 1rz3_A Hypothetical protein rb 96.4 0.003 1E-07 55.0 4.8 41 191-231 3-44 (201)
125 3rlf_A Maltose/maltodextrin im 96.4 0.016 5.3E-07 55.7 10.2 128 210-337 30-200 (381)
126 2zu0_C Probable ATP-dependent 96.3 0.05 1.7E-06 49.5 13.0 52 285-336 175-229 (267)
127 1in4_A RUVB, holliday junction 96.3 0.0018 6.2E-08 61.2 3.4 45 187-231 26-73 (334)
128 3fvq_A Fe(3+) IONS import ATP- 96.3 0.032 1.1E-06 53.1 12.0 128 210-337 31-205 (359)
129 2yyz_A Sugar ABC transporter, 96.3 0.019 6.4E-07 54.8 10.3 129 209-337 29-200 (359)
130 1v43_A Sugar-binding transport 96.2 0.017 5.8E-07 55.3 9.6 128 209-337 37-208 (372)
131 2bbs_A Cystic fibrosis transme 96.2 0.083 2.8E-06 48.7 13.9 53 285-337 170-225 (290)
132 3lw7_A Adenylate kinase relate 96.2 0.0025 8.6E-08 53.3 3.0 20 210-229 2-21 (179)
133 1oxx_K GLCV, glucose, ABC tran 96.1 0.026 9E-07 53.6 10.3 128 210-337 32-207 (353)
134 1g29_1 MALK, maltose transport 96.1 0.031 1.1E-06 53.5 10.7 22 210-231 30-51 (372)
135 1odf_A YGR205W, hypothetical 3 96.1 0.0057 1.9E-07 56.6 5.1 26 206-231 28-53 (290)
136 1qhx_A CPT, protein (chloramph 96.1 0.0029 9.8E-08 53.6 2.9 22 210-231 4-25 (178)
137 3hws_A ATP-dependent CLP prote 96.0 0.0039 1.3E-07 59.5 4.1 45 187-231 16-73 (363)
138 1pzn_A RAD51, DNA repair and r 96.0 0.02 6.9E-07 54.3 8.9 95 208-303 130-242 (349)
139 3kb2_A SPBC2 prophage-derived 95.9 0.0035 1.2E-07 52.5 2.9 22 210-231 2-23 (173)
140 3lda_A DNA repair protein RAD5 95.9 0.023 7.8E-07 55.0 8.9 94 209-303 178-284 (400)
141 1zp6_A Hypothetical protein AT 95.9 0.0047 1.6E-07 52.8 3.7 23 209-231 9-31 (191)
142 3jvv_A Twitching mobility prot 95.9 0.014 4.9E-07 55.5 7.3 113 209-337 123-237 (356)
143 3upu_A ATP-dependent DNA helic 95.9 0.027 9.3E-07 55.5 9.5 35 194-231 33-67 (459)
144 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.012 4E-07 58.8 6.8 42 187-232 23-64 (500)
145 3bk7_A ABC transporter ATP-bin 95.9 0.028 9.5E-07 57.5 9.7 128 210-337 383-538 (607)
146 3cf2_A TER ATPase, transitiona 95.9 0.01 3.4E-07 62.5 6.4 93 187-303 478-581 (806)
147 1ly1_A Polynucleotide kinase; 95.8 0.0046 1.6E-07 52.2 3.1 22 210-231 3-24 (181)
148 3vaa_A Shikimate kinase, SK; s 95.8 0.0046 1.6E-07 53.6 3.1 23 209-231 25-47 (199)
149 1kgd_A CASK, peripheral plasma 95.8 0.0046 1.6E-07 52.7 3.0 22 210-231 6-27 (180)
150 1ypw_A Transitional endoplasmi 95.8 0.0026 8.7E-08 67.5 1.7 45 187-231 478-533 (806)
151 2px0_A Flagellar biosynthesis 95.8 0.081 2.8E-06 48.9 11.6 24 208-231 104-127 (296)
152 3uie_A Adenylyl-sulfate kinase 95.7 0.0063 2.2E-07 52.7 3.6 24 208-231 24-47 (200)
153 1kag_A SKI, shikimate kinase I 95.7 0.0043 1.5E-07 52.2 2.5 22 210-231 5-26 (173)
154 1yqt_A RNAse L inhibitor; ATP- 95.7 0.015 5.2E-07 58.6 6.9 128 210-337 313-468 (538)
155 3ozx_A RNAse L inhibitor; ATP 95.7 0.039 1.3E-06 55.5 9.8 23 209-231 25-47 (538)
156 3trf_A Shikimate kinase, SK; a 95.7 0.0054 1.8E-07 52.2 2.9 23 209-231 5-27 (185)
157 3j16_B RLI1P; ribosome recycli 95.6 0.057 1.9E-06 55.1 10.8 128 210-337 379-534 (608)
158 1ex7_A Guanylate kinase; subst 95.6 0.0051 1.7E-07 53.1 2.4 22 210-231 2-23 (186)
159 2rhm_A Putative kinase; P-loop 95.6 0.0072 2.5E-07 51.6 3.4 23 209-231 5-27 (193)
160 1nks_A Adenylate kinase; therm 95.6 0.0065 2.2E-07 51.8 3.1 22 210-231 2-23 (194)
161 3tr0_A Guanylate kinase, GMP k 95.6 0.0065 2.2E-07 52.6 3.1 22 210-231 8-29 (205)
162 1knq_A Gluconate kinase; ALFA/ 95.5 0.0095 3.2E-07 50.2 4.0 23 209-231 8-30 (175)
163 3ozx_A RNAse L inhibitor; ATP 95.5 0.024 8.1E-07 57.1 7.4 128 210-337 295-452 (538)
164 1sky_E F1-ATPase, F1-ATP synth 95.5 0.034 1.2E-06 54.6 8.3 62 198-261 141-203 (473)
165 1uj2_A Uridine-cytidine kinase 95.5 0.0078 2.7E-07 54.3 3.4 24 208-231 21-44 (252)
166 3t61_A Gluconokinase; PSI-biol 95.5 0.0055 1.9E-07 53.1 2.3 23 209-231 18-40 (202)
167 1kht_A Adenylate kinase; phosp 95.4 0.007 2.4E-07 51.6 2.9 22 210-231 4-25 (192)
168 1gvn_B Zeta; postsegregational 95.4 0.012 4.2E-07 54.2 4.7 37 195-231 16-55 (287)
169 3asz_A Uridine kinase; cytidin 95.4 0.0087 3E-07 52.1 3.5 24 208-231 5-28 (211)
170 2bdt_A BH3686; alpha-beta prot 95.4 0.0086 3E-07 51.2 3.3 22 210-231 3-24 (189)
171 3sr0_A Adenylate kinase; phosp 95.4 0.043 1.5E-06 47.9 7.9 84 211-311 2-93 (206)
172 1g8p_A Magnesium-chelatase 38 95.4 0.008 2.7E-07 56.6 3.4 43 187-231 25-67 (350)
173 2orw_A Thymidine kinase; TMTK, 95.4 0.0015 5E-08 56.3 -1.7 22 210-231 4-25 (184)
174 4eun_A Thermoresistant glucoki 95.4 0.0085 2.9E-07 51.9 3.3 23 209-231 29-51 (200)
175 2iw3_A Elongation factor 3A; a 95.4 0.061 2.1E-06 57.7 10.4 123 210-337 462-611 (986)
176 3tau_A Guanylate kinase, GMP k 95.4 0.0089 3.1E-07 52.2 3.4 23 209-231 8-30 (208)
177 2ga8_A Hypothetical 39.9 kDa p 95.4 0.012 4.2E-07 55.7 4.5 43 189-231 2-46 (359)
178 3a00_A Guanylate kinase, GMP k 95.4 0.0066 2.3E-07 52.0 2.5 22 210-231 2-23 (186)
179 1uf9_A TT1252 protein; P-loop, 95.4 0.0094 3.2E-07 51.3 3.5 25 207-231 6-30 (203)
180 2qt1_A Nicotinamide riboside k 95.4 0.01 3.5E-07 51.6 3.7 24 208-231 20-43 (207)
181 2jaq_A Deoxyguanosine kinase; 95.4 0.0079 2.7E-07 51.8 2.9 21 211-231 2-22 (205)
182 2j41_A Guanylate kinase; GMP, 95.3 0.0095 3.3E-07 51.5 3.4 22 210-231 7-28 (207)
183 3j16_B RLI1P; ribosome recycli 95.3 0.11 3.7E-06 53.1 11.6 80 256-337 201-287 (608)
184 3iij_A Coilin-interacting nucl 95.3 0.0072 2.5E-07 51.2 2.5 23 209-231 11-33 (180)
185 3ice_A Transcription terminati 95.3 0.0073 2.5E-07 57.9 2.7 53 197-251 163-216 (422)
186 1cke_A CK, MSSA, protein (cyti 95.3 0.0083 2.9E-07 52.8 2.9 22 210-231 6-27 (227)
187 2qor_A Guanylate kinase; phosp 95.3 0.0074 2.5E-07 52.5 2.5 23 209-231 12-34 (204)
188 2c95_A Adenylate kinase 1; tra 95.3 0.0095 3.3E-07 51.0 3.2 23 209-231 9-31 (196)
189 1vma_A Cell division protein F 95.3 0.039 1.3E-06 51.3 7.6 24 208-231 103-126 (306)
190 2if2_A Dephospho-COA kinase; a 95.3 0.0088 3E-07 51.8 2.9 22 210-231 2-23 (204)
191 3tlx_A Adenylate kinase 2; str 95.2 0.012 4E-07 52.9 3.8 36 196-231 16-51 (243)
192 3tqc_A Pantothenate kinase; bi 95.2 0.014 4.8E-07 54.8 4.4 43 189-231 70-114 (321)
193 1tev_A UMP-CMP kinase; ploop, 95.2 0.0099 3.4E-07 50.7 3.2 23 209-231 3-25 (196)
194 1jjv_A Dephospho-COA kinase; P 95.2 0.011 3.6E-07 51.4 3.4 22 210-231 3-24 (206)
195 3zvl_A Bifunctional polynucleo 95.2 0.04 1.4E-06 53.6 7.9 24 208-231 257-280 (416)
196 1y63_A LMAJ004144AAA protein; 95.2 0.01 3.5E-07 50.7 3.2 23 209-231 10-32 (184)
197 1ukz_A Uridylate kinase; trans 95.2 0.011 3.8E-07 51.1 3.5 24 208-231 14-37 (203)
198 3e70_C DPA, signal recognition 95.2 0.068 2.3E-06 50.2 9.1 24 208-231 128-151 (328)
199 1zuh_A Shikimate kinase; alpha 95.2 0.0094 3.2E-07 49.9 2.9 24 208-231 6-29 (168)
200 3kl4_A SRP54, signal recogniti 95.2 0.089 3E-06 51.3 10.2 24 208-231 96-119 (433)
201 2ze6_A Isopentenyl transferase 95.2 0.0098 3.3E-07 53.8 3.1 22 210-231 2-23 (253)
202 1lvg_A Guanylate kinase, GMP k 95.2 0.0081 2.8E-07 52.1 2.5 22 210-231 5-26 (198)
203 2xxa_A Signal recognition part 95.1 0.1 3.5E-06 51.0 10.5 24 208-231 99-122 (433)
204 3dm5_A SRP54, signal recogniti 95.1 0.1 3.4E-06 51.0 10.3 24 208-231 99-122 (443)
205 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.012 4E-07 53.5 3.3 23 209-231 4-26 (260)
206 2p5t_B PEZT; postsegregational 95.1 0.015 5.3E-07 52.4 4.2 37 195-231 15-54 (253)
207 3cm0_A Adenylate kinase; ATP-b 95.1 0.011 3.9E-07 50.1 3.1 22 210-231 5-26 (186)
208 2bbw_A Adenylate kinase 4, AK4 95.1 0.012 4E-07 52.9 3.3 23 209-231 27-49 (246)
209 1via_A Shikimate kinase; struc 95.1 0.01 3.4E-07 50.1 2.7 21 211-231 6-26 (175)
210 2iyv_A Shikimate kinase, SK; t 95.1 0.008 2.8E-07 51.1 2.1 21 211-231 4-24 (184)
211 1znw_A Guanylate kinase, GMP k 95.1 0.011 3.9E-07 51.4 3.1 22 210-231 21-42 (207)
212 2yvu_A Probable adenylyl-sulfa 95.1 0.013 4.6E-07 49.9 3.4 24 208-231 12-35 (186)
213 2bwj_A Adenylate kinase 5; pho 95.0 0.011 3.7E-07 50.7 2.9 23 209-231 12-34 (199)
214 2plr_A DTMP kinase, probable t 95.0 0.013 4.4E-07 50.8 3.3 22 210-231 5-26 (213)
215 1qf9_A UMP/CMP kinase, protein 95.0 0.013 4.3E-07 50.0 3.1 23 209-231 6-28 (194)
216 3cmu_A Protein RECA, recombina 95.0 0.039 1.4E-06 63.2 7.9 88 208-302 1426-1515(2050)
217 1jr3_D DNA polymerase III, del 95.0 0.29 1E-05 45.8 13.0 137 198-371 9-155 (343)
218 3fwy_A Light-independent proto 95.0 0.013 4.6E-07 54.7 3.5 24 208-231 47-70 (314)
219 2q6t_A DNAB replication FORK h 95.0 0.32 1.1E-05 47.5 13.6 53 208-263 199-251 (444)
220 1fx0_B ATP synthase beta chain 95.0 0.056 1.9E-06 53.3 8.0 104 198-303 155-277 (498)
221 1e6c_A Shikimate kinase; phosp 95.0 0.0098 3.3E-07 49.9 2.3 22 210-231 3-24 (173)
222 3aez_A Pantothenate kinase; tr 95.0 0.015 5E-07 54.4 3.7 24 208-231 89-112 (312)
223 2pt5_A Shikimate kinase, SK; a 94.9 0.013 4.5E-07 48.8 2.9 21 211-231 2-22 (168)
224 2vli_A Antibiotic resistance p 94.9 0.0097 3.3E-07 50.4 2.0 23 209-231 5-27 (183)
225 2ffh_A Protein (FFH); SRP54, s 94.9 0.075 2.6E-06 51.7 8.6 23 209-231 98-120 (425)
226 2pbr_A DTMP kinase, thymidylat 94.9 0.014 4.6E-07 49.9 3.0 21 211-231 2-22 (195)
227 2hf9_A Probable hydrogenase ni 94.9 0.022 7.6E-07 49.9 4.4 25 208-232 37-61 (226)
228 4a74_A DNA repair and recombin 94.9 0.044 1.5E-06 47.9 6.5 55 209-264 25-83 (231)
229 2ck3_D ATP synthase subunit be 94.9 0.08 2.7E-06 52.0 8.7 104 197-302 142-263 (482)
230 2z0h_A DTMP kinase, thymidylat 94.9 0.031 1.1E-06 47.7 5.3 21 211-231 2-22 (197)
231 2cdn_A Adenylate kinase; phosp 94.8 0.016 5.4E-07 50.1 3.3 23 209-231 20-42 (201)
232 3p32_A Probable GTPase RV1496/ 94.8 0.024 8.2E-07 53.9 4.9 37 195-231 65-101 (355)
233 1z6g_A Guanylate kinase; struc 94.8 0.012 4E-07 52.0 2.5 22 210-231 24-45 (218)
234 4e22_A Cytidylate kinase; P-lo 94.8 0.014 4.8E-07 52.6 3.1 23 209-231 27-49 (252)
235 2jeo_A Uridine-cytidine kinase 94.8 0.017 6E-07 51.7 3.7 24 208-231 24-47 (245)
236 2ewv_A Twitching motility prot 94.8 0.044 1.5E-06 52.5 6.7 110 209-335 136-248 (372)
237 3ney_A 55 kDa erythrocyte memb 94.8 0.015 5.1E-07 50.5 3.0 23 209-231 19-41 (197)
238 1nn5_A Similar to deoxythymidy 94.8 0.016 5.4E-07 50.4 3.2 23 209-231 9-31 (215)
239 1xjc_A MOBB protein homolog; s 94.8 0.015 5.1E-07 49.2 2.9 24 208-231 3-26 (169)
240 1j8m_F SRP54, signal recogniti 94.7 0.16 5.4E-06 47.0 10.1 23 209-231 98-120 (297)
241 1yqt_A RNAse L inhibitor; ATP- 94.7 0.066 2.2E-06 53.9 8.0 80 258-337 140-224 (538)
242 3b5x_A Lipid A export ATP-bind 94.7 0.2 6.8E-06 50.9 11.6 23 209-231 369-391 (582)
243 2wwf_A Thymidilate kinase, put 94.7 0.016 5.6E-07 50.2 3.1 23 209-231 10-32 (212)
244 1htw_A HI0065; nucleotide-bind 94.7 0.019 6.5E-07 48.0 3.3 23 209-231 33-55 (158)
245 1gtv_A TMK, thymidylate kinase 94.7 0.0092 3.1E-07 51.9 1.4 21 211-231 2-22 (214)
246 1aky_A Adenylate kinase; ATP:A 94.7 0.017 5.8E-07 50.7 3.1 23 209-231 4-26 (220)
247 2wsm_A Hydrogenase expression/ 94.7 0.021 7.2E-07 49.9 3.7 38 193-232 16-53 (221)
248 1zd8_A GTP:AMP phosphotransfer 94.6 0.016 5.5E-07 51.2 2.9 23 209-231 7-29 (227)
249 3umf_A Adenylate kinase; rossm 94.6 0.02 6.7E-07 50.6 3.4 25 207-231 27-51 (217)
250 2grj_A Dephospho-COA kinase; T 94.6 0.018 6.3E-07 49.7 3.2 24 208-231 11-34 (192)
251 1s96_A Guanylate kinase, GMP k 94.6 0.017 5.9E-07 51.0 3.1 23 209-231 16-38 (219)
252 2f6r_A COA synthase, bifunctio 94.6 0.02 6.8E-07 52.6 3.5 24 208-231 74-97 (281)
253 4a1f_A DNAB helicase, replicat 94.6 0.12 4.2E-06 48.6 9.0 91 209-303 46-167 (338)
254 2f1r_A Molybdopterin-guanine d 94.5 0.013 4.6E-07 49.6 2.0 22 210-231 3-24 (171)
255 1rj9_A FTSY, signal recognitio 94.5 0.02 6.7E-07 53.4 3.3 24 208-231 101-124 (304)
256 1zak_A Adenylate kinase; ATP:A 94.5 0.017 5.6E-07 50.9 2.7 23 209-231 5-27 (222)
257 2v54_A DTMP kinase, thymidylat 94.5 0.021 7E-07 49.2 3.2 22 210-231 5-26 (204)
258 3fb4_A Adenylate kinase; psych 94.5 0.019 6.4E-07 50.2 3.0 21 211-231 2-22 (216)
259 1zu4_A FTSY; GTPase, signal re 94.5 0.04 1.4E-06 51.6 5.4 24 208-231 104-127 (320)
260 2pez_A Bifunctional 3'-phospho 94.5 0.021 7.1E-07 48.3 3.1 23 209-231 5-27 (179)
261 2ehv_A Hypothetical protein PH 94.5 0.02 6.8E-07 51.0 3.1 23 209-231 30-52 (251)
262 1vht_A Dephospho-COA kinase; s 94.4 0.024 8.2E-07 49.6 3.6 23 209-231 4-26 (218)
263 1m7g_A Adenylylsulfate kinase; 94.4 0.023 8E-07 49.5 3.4 23 209-231 25-47 (211)
264 3dl0_A Adenylate kinase; phosp 94.4 0.021 7.1E-07 49.9 3.0 21 211-231 2-22 (216)
265 3bk7_A ABC transporter ATP-bin 94.3 0.17 5.9E-06 51.6 10.1 80 258-337 210-294 (607)
266 3lnc_A Guanylate kinase, GMP k 94.3 0.015 5.1E-07 51.6 1.9 21 210-230 28-48 (231)
267 1g41_A Heat shock protein HSLU 94.3 0.032 1.1E-06 54.7 4.2 45 187-231 16-72 (444)
268 2i3b_A HCR-ntpase, human cance 94.2 0.021 7.1E-07 49.3 2.6 21 211-231 3-23 (189)
269 3llm_A ATP-dependent RNA helic 94.2 0.16 5.3E-06 45.0 8.5 105 194-303 65-187 (235)
270 1sq5_A Pantothenate kinase; P- 94.2 0.028 9.6E-07 52.3 3.6 24 208-231 79-102 (308)
271 2yl4_A ATP-binding cassette SU 94.2 0.19 6.5E-06 51.1 10.1 23 209-231 370-392 (595)
272 3ake_A Cytidylate kinase; CMP 94.1 0.025 8.4E-07 48.9 3.0 21 211-231 4-24 (208)
273 3l0o_A Transcription terminati 94.1 0.16 5.5E-06 48.6 8.7 35 196-231 163-197 (427)
274 3nwj_A ATSK2; P loop, shikimat 94.1 0.02 6.7E-07 51.8 2.3 22 210-231 49-70 (250)
275 3b85_A Phosphate starvation-in 94.1 0.022 7.6E-07 49.9 2.6 22 210-231 23-44 (208)
276 3e1s_A Exodeoxyribonuclease V, 94.1 0.088 3E-06 53.4 7.3 22 210-231 205-226 (574)
277 3b9q_A Chloroplast SRP recepto 94.1 0.03 1E-06 52.0 3.6 23 209-231 100-122 (302)
278 1fzq_A ADP-ribosylation factor 94.0 0.039 1.3E-06 46.6 4.0 34 199-232 6-39 (181)
279 3bh0_A DNAB-like replicative h 94.0 0.13 4.4E-06 47.9 7.8 51 209-263 68-118 (315)
280 1np6_A Molybdopterin-guanine d 94.0 0.029 9.8E-07 47.7 2.9 23 209-231 6-28 (174)
281 1q57_A DNA primase/helicase; d 93.9 0.41 1.4E-05 47.5 11.8 92 209-303 242-365 (503)
282 2yhs_A FTSY, cell division pro 93.9 0.053 1.8E-06 53.7 5.2 24 208-231 292-315 (503)
283 3cmw_A Protein RECA, recombina 93.9 0.088 3E-06 59.6 7.5 89 208-303 382-472 (1706)
284 1g6h_A High-affinity branched- 93.9 0.029 1E-06 50.8 3.1 22 210-231 34-55 (257)
285 1e4v_A Adenylate kinase; trans 93.9 0.03 1E-06 48.9 2.9 21 211-231 2-22 (214)
286 2d2e_A SUFC protein; ABC-ATPas 93.9 0.031 1.1E-06 50.4 3.1 22 210-231 30-51 (250)
287 2zej_A Dardarin, leucine-rich 93.8 0.03 1E-06 47.4 2.9 22 211-232 4-25 (184)
288 2iw3_A Elongation factor 3A; a 93.8 0.21 7.1E-06 53.6 9.8 58 284-347 911-970 (986)
289 2ff7_A Alpha-hemolysin translo 93.8 0.031 1.1E-06 50.3 3.1 22 210-231 36-57 (247)
290 1yrb_A ATP(GTP)binding protein 93.8 0.036 1.2E-06 49.8 3.5 24 208-231 13-36 (262)
291 3cmu_A Protein RECA, recombina 93.8 0.11 3.8E-06 59.6 8.1 107 190-303 363-472 (2050)
292 3be4_A Adenylate kinase; malar 93.8 0.031 1E-06 49.0 2.9 22 210-231 6-27 (217)
293 1ny5_A Transcriptional regulat 93.8 0.35 1.2E-05 46.3 10.7 44 187-231 138-182 (387)
294 1mv5_A LMRA, multidrug resista 93.8 0.034 1.2E-06 49.9 3.2 23 209-231 28-50 (243)
295 2xb4_A Adenylate kinase; ATP-b 93.8 0.031 1.1E-06 49.3 2.9 21 211-231 2-22 (223)
296 3k1j_A LON protease, ATP-depen 93.8 0.036 1.2E-06 56.7 3.8 41 187-231 42-82 (604)
297 3r20_A Cytidylate kinase; stru 93.8 0.033 1.1E-06 49.7 3.1 23 209-231 9-31 (233)
298 2wji_A Ferrous iron transport 93.8 0.041 1.4E-06 45.6 3.5 23 210-232 4-26 (165)
299 3d3q_A TRNA delta(2)-isopenten 93.8 0.033 1.1E-06 52.5 3.2 22 210-231 8-29 (340)
300 1oix_A RAS-related protein RAB 93.7 0.034 1.1E-06 47.5 2.9 24 209-232 29-52 (191)
301 3hjn_A DTMP kinase, thymidylat 93.7 0.08 2.7E-06 45.8 5.4 50 211-262 2-51 (197)
302 1ak2_A Adenylate kinase isoenz 93.7 0.037 1.2E-06 49.1 3.2 23 209-231 16-38 (233)
303 1tue_A Replication protein E1; 93.7 0.047 1.6E-06 47.6 3.8 36 195-231 45-80 (212)
304 2ghi_A Transport protein; mult 93.7 0.034 1.2E-06 50.4 3.1 22 210-231 47-68 (260)
305 1ltq_A Polynucleotide kinase; 93.6 0.036 1.2E-06 51.1 3.1 22 210-231 3-24 (301)
306 3bgw_A DNAB-like replicative h 93.6 0.32 1.1E-05 47.6 10.1 50 209-262 197-246 (444)
307 4eaq_A DTMP kinase, thymidylat 93.6 0.074 2.5E-06 47.2 5.1 25 208-232 25-49 (229)
308 3qf4_A ABC transporter, ATP-bi 93.6 0.24 8.2E-06 50.4 9.5 23 209-231 369-391 (587)
309 2og2_A Putative signal recogni 93.5 0.043 1.5E-06 52.3 3.6 24 208-231 156-179 (359)
310 2ihy_A ABC transporter, ATP-bi 93.5 0.037 1.3E-06 50.8 3.0 22 210-231 48-69 (279)
311 3vr4_D V-type sodium ATPase su 93.5 0.06 2.1E-06 52.6 4.6 102 198-302 141-258 (465)
312 3thx_A DNA mismatch repair pro 93.5 0.1 3.4E-06 55.9 6.7 47 290-337 739-791 (934)
313 1a7j_A Phosphoribulokinase; tr 93.5 0.023 7.8E-07 52.5 1.5 24 208-231 4-27 (290)
314 2f9l_A RAB11B, member RAS onco 93.5 0.036 1.2E-06 47.5 2.7 24 209-232 5-28 (199)
315 3a8t_A Adenylate isopentenyltr 93.5 0.046 1.6E-06 51.4 3.6 23 209-231 40-62 (339)
316 1svm_A Large T antigen; AAA+ f 93.4 0.064 2.2E-06 51.4 4.7 36 196-231 156-191 (377)
317 2wjg_A FEOB, ferrous iron tran 93.4 0.052 1.8E-06 45.7 3.5 24 209-232 7-30 (188)
318 2dyk_A GTP-binding protein; GT 93.3 0.048 1.6E-06 44.5 3.2 23 210-232 2-24 (161)
319 2eyu_A Twitching motility prot 93.3 0.046 1.6E-06 49.6 3.3 113 209-336 25-138 (261)
320 3crm_A TRNA delta(2)-isopenten 93.3 0.043 1.5E-06 51.4 3.1 22 210-231 6-27 (323)
321 2dr3_A UPF0273 protein PH0284; 93.3 0.059 2E-06 47.7 3.9 116 209-331 23-173 (247)
322 2vp4_A Deoxynucleoside kinase; 93.3 0.043 1.5E-06 48.6 3.0 24 208-231 19-42 (230)
323 2e87_A Hypothetical protein PH 93.3 0.53 1.8E-05 44.4 10.9 25 208-232 166-190 (357)
324 4f4c_A Multidrug resistance pr 93.3 0.49 1.7E-05 52.8 12.0 23 209-231 1105-1127(1321)
325 2v9p_A Replication protein E1; 93.2 0.045 1.5E-06 50.9 3.1 24 208-231 125-148 (305)
326 2ce2_X GTPase HRAS; signaling 93.2 0.046 1.6E-06 44.6 2.8 22 211-232 5-26 (166)
327 2lkc_A Translation initiation 93.1 0.077 2.6E-06 44.1 4.2 25 208-232 7-31 (178)
328 3end_A Light-independent proto 93.1 0.053 1.8E-06 50.1 3.5 25 207-231 39-63 (307)
329 1nlf_A Regulatory protein REPA 93.1 0.046 1.6E-06 49.9 3.0 23 209-231 30-52 (279)
330 2v3c_C SRP54, signal recogniti 93.1 0.052 1.8E-06 53.0 3.5 23 209-231 99-121 (432)
331 1q3t_A Cytidylate kinase; nucl 93.1 0.055 1.9E-06 48.0 3.4 24 208-231 15-38 (236)
332 3exa_A TRNA delta(2)-isopenten 93.1 0.05 1.7E-06 50.7 3.1 23 209-231 3-25 (322)
333 3nh6_A ATP-binding cassette SU 93.0 0.041 1.4E-06 51.2 2.5 23 209-231 80-102 (306)
334 2nzj_A GTP-binding protein REM 93.0 0.051 1.8E-06 45.0 2.9 24 209-232 4-27 (175)
335 1cr0_A DNA primase/helicase; R 93.0 0.05 1.7E-06 50.0 3.1 24 209-232 35-58 (296)
336 3sop_A Neuronal-specific septi 93.0 0.052 1.8E-06 49.5 3.1 21 211-231 4-24 (270)
337 1u0j_A DNA replication protein 92.9 0.1 3.4E-06 47.4 4.9 36 196-231 91-126 (267)
338 1z2a_A RAS-related protein RAB 92.9 0.05 1.7E-06 44.6 2.7 24 209-232 5-28 (168)
339 1tq4_A IIGP1, interferon-induc 92.9 0.047 1.6E-06 53.0 2.8 24 208-231 68-91 (413)
340 2qe7_A ATP synthase subunit al 92.9 0.15 5.2E-06 50.3 6.4 101 197-302 151-264 (502)
341 2qm8_A GTPase/ATPase; G protei 92.9 0.099 3.4E-06 49.3 5.0 35 197-231 43-77 (337)
342 1ls1_A Signal recognition part 92.8 0.061 2.1E-06 49.7 3.4 23 209-231 98-120 (295)
343 2p67_A LAO/AO transport system 92.8 0.099 3.4E-06 49.3 4.9 35 197-231 44-78 (341)
344 2r9v_A ATP synthase subunit al 92.8 0.091 3.1E-06 52.0 4.7 102 197-303 164-278 (515)
345 2ocp_A DGK, deoxyguanosine kin 92.7 0.064 2.2E-06 47.7 3.3 24 209-232 2-25 (241)
346 3con_A GTPase NRAS; structural 92.7 0.054 1.8E-06 45.8 2.7 23 210-232 22-44 (190)
347 1u8z_A RAS-related protein RAL 92.7 0.06 2E-06 44.0 2.9 24 209-232 4-27 (168)
348 2ged_A SR-beta, signal recogni 92.7 0.065 2.2E-06 45.4 3.2 25 208-232 47-71 (193)
349 3q72_A GTP-binding protein RAD 92.7 0.056 1.9E-06 44.4 2.7 22 211-232 4-25 (166)
350 1nij_A Hypothetical protein YJ 92.7 0.06 2E-06 50.3 3.2 25 208-232 3-27 (318)
351 1f6b_A SAR1; gtpases, N-termin 92.7 0.092 3.1E-06 45.0 4.2 34 198-232 15-48 (198)
352 2j37_W Signal recognition part 92.7 0.1 3.4E-06 52.0 4.9 24 208-231 100-123 (504)
353 3foz_A TRNA delta(2)-isopenten 92.6 0.063 2.2E-06 49.9 3.2 24 208-231 9-32 (316)
354 2erx_A GTP-binding protein DI- 92.6 0.062 2.1E-06 44.2 2.9 23 210-232 4-26 (172)
355 3cmw_A Protein RECA, recombina 92.6 0.19 6.4E-06 57.0 7.5 89 208-303 1430-1520(1706)
356 3def_A T7I23.11 protein; chlor 92.6 0.11 3.9E-06 46.8 4.9 38 195-232 22-59 (262)
357 1cp2_A CP2, nitrogenase iron p 92.6 0.067 2.3E-06 48.3 3.3 22 210-231 2-23 (269)
358 2gj8_A MNME, tRNA modification 92.6 0.064 2.2E-06 44.9 2.9 23 210-232 5-27 (172)
359 1z08_A RAS-related protein RAB 92.6 0.078 2.7E-06 43.6 3.5 24 209-232 6-29 (170)
360 2f7s_A C25KG, RAS-related prot 92.5 0.49 1.7E-05 40.7 8.8 24 209-232 25-48 (217)
361 1h65_A Chloroplast outer envel 92.5 0.13 4.5E-06 46.5 5.2 37 196-232 26-62 (270)
362 3q85_A GTP-binding protein REM 92.5 0.083 2.8E-06 43.4 3.5 22 210-231 3-24 (169)
363 2afh_E Nitrogenase iron protei 92.5 0.074 2.5E-06 48.7 3.5 23 209-231 2-24 (289)
364 4edh_A DTMP kinase, thymidylat 92.5 0.18 6E-06 44.2 5.8 23 209-231 6-28 (213)
365 1c1y_A RAS-related protein RAP 92.5 0.063 2.2E-06 44.0 2.7 23 210-232 4-26 (167)
366 1ek0_A Protein (GTP-binding pr 92.4 0.068 2.3E-06 43.8 2.9 22 211-232 5-26 (170)
367 3oaa_A ATP synthase subunit al 92.4 0.27 9.3E-06 48.5 7.5 102 197-303 151-265 (513)
368 1svi_A GTP-binding protein YSX 92.4 0.077 2.6E-06 44.9 3.3 25 208-232 22-46 (195)
369 3pqc_A Probable GTP-binding pr 92.4 0.084 2.9E-06 44.5 3.6 25 208-232 22-46 (195)
370 1fx0_A ATP synthase alpha chai 92.4 0.11 3.8E-06 51.4 4.8 89 211-303 165-266 (507)
371 3thx_B DNA mismatch repair pro 92.4 0.2 6.8E-06 53.5 7.1 47 290-337 750-802 (918)
372 2r8r_A Sensor protein; KDPD, P 92.4 0.17 5.9E-06 44.7 5.6 108 210-331 7-127 (228)
373 1z0j_A RAB-22, RAS-related pro 92.4 0.07 2.4E-06 43.8 2.9 23 210-232 7-29 (170)
374 1m7b_A RND3/RHOE small GTP-bin 92.4 0.068 2.3E-06 45.0 2.8 24 209-232 7-30 (184)
375 1nrj_B SR-beta, signal recogni 92.3 0.077 2.6E-06 46.0 3.3 25 208-232 11-35 (218)
376 1kao_A RAP2A; GTP-binding prot 92.3 0.066 2.3E-06 43.7 2.7 23 210-232 4-26 (167)
377 3kta_A Chromosome segregation 92.3 0.075 2.6E-06 44.8 3.1 22 210-231 27-48 (182)
378 3dzd_A Transcriptional regulat 92.3 0.38 1.3E-05 45.8 8.4 46 187-232 130-175 (368)
379 2fn4_A P23, RAS-related protei 92.3 0.096 3.3E-06 43.5 3.7 25 208-232 8-32 (181)
380 1p5z_B DCK, deoxycytidine kina 92.3 0.056 1.9E-06 48.9 2.3 24 208-231 23-46 (263)
381 3t1o_A Gliding protein MGLA; G 92.3 0.067 2.3E-06 45.2 2.7 23 209-231 14-36 (198)
382 1lw7_A Transcriptional regulat 92.2 0.072 2.5E-06 50.7 3.2 23 209-231 170-192 (365)
383 1ky3_A GTP-binding protein YPT 92.2 0.092 3.1E-06 43.6 3.5 25 208-232 7-31 (182)
384 3ihw_A Centg3; RAS, centaurin, 92.2 0.072 2.5E-06 45.1 2.8 24 209-232 20-43 (184)
385 1r8s_A ADP-ribosylation factor 92.2 0.071 2.4E-06 43.6 2.7 21 212-232 3-23 (164)
386 3tw8_B RAS-related protein RAB 92.2 0.087 3E-06 43.8 3.3 25 208-232 8-32 (181)
387 2cxx_A Probable GTP-binding pr 92.1 0.075 2.6E-06 44.7 2.8 22 211-232 3-24 (190)
388 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.08 2.7E-06 43.9 2.9 24 209-232 7-30 (177)
389 2qmh_A HPR kinase/phosphorylas 92.0 0.088 3E-06 45.6 3.2 22 210-231 35-56 (205)
390 2yv5_A YJEQ protein; hydrolase 92.0 0.13 4.3E-06 47.7 4.5 32 194-230 155-186 (302)
391 1pui_A ENGB, probable GTP-bind 92.0 0.059 2E-06 46.4 2.1 24 209-232 26-49 (210)
392 3cbq_A GTP-binding protein REM 92.0 0.068 2.3E-06 45.8 2.4 24 208-231 22-45 (195)
393 3c5c_A RAS-like protein 12; GD 92.0 0.079 2.7E-06 44.9 2.8 24 209-232 21-44 (187)
394 1r2q_A RAS-related protein RAB 92.0 0.078 2.7E-06 43.5 2.7 23 210-232 7-29 (170)
395 1z0f_A RAB14, member RAS oncog 91.9 0.085 2.9E-06 43.7 2.9 24 209-232 15-38 (179)
396 1ewq_A DNA mismatch repair pro 91.9 0.44 1.5E-05 49.9 8.9 22 210-231 577-598 (765)
397 3ux8_A Excinuclease ABC, A sub 91.9 0.55 1.9E-05 48.4 9.5 53 285-337 213-270 (670)
398 3kkq_A RAS-related protein M-R 91.9 0.1 3.4E-06 43.7 3.3 25 208-232 17-41 (183)
399 2iwr_A Centaurin gamma 1; ANK 91.9 0.066 2.3E-06 44.6 2.2 24 209-232 7-30 (178)
400 1upt_A ARL1, ADP-ribosylation 91.9 0.11 3.9E-06 42.6 3.6 24 209-232 7-30 (171)
401 2bme_A RAB4A, RAS-related prot 91.9 0.087 3E-06 44.2 2.9 24 209-232 10-33 (186)
402 1m2o_B GTP-binding protein SAR 91.8 0.08 2.7E-06 45.0 2.7 24 209-232 23-46 (190)
403 4dsu_A GTPase KRAS, isoform 2B 91.8 0.087 3E-06 44.2 2.9 23 210-232 5-27 (189)
404 2hxs_A RAB-26, RAS-related pro 91.8 0.14 4.6E-06 42.5 4.1 24 209-232 6-29 (178)
405 3llu_A RAS-related GTP-binding 91.8 0.089 3E-06 44.9 2.9 24 209-232 20-43 (196)
406 2y8e_A RAB-protein 6, GH09086P 91.8 0.091 3.1E-06 43.5 2.9 23 210-232 15-37 (179)
407 1g16_A RAS-related protein SEC 91.7 0.11 3.9E-06 42.5 3.5 23 210-232 4-26 (170)
408 1mh1_A RAC1; GTP-binding, GTPa 91.7 0.089 3.1E-06 44.0 2.9 23 210-232 6-28 (186)
409 2o8b_B DNA mismatch repair pro 91.7 0.024 8.1E-07 61.5 -1.0 47 289-337 865-918 (1022)
410 3t5g_A GTP-binding protein RHE 91.7 0.11 3.6E-06 43.5 3.3 24 209-232 6-29 (181)
411 3gd7_A Fusion complex of cysti 91.7 0.089 3.1E-06 50.6 3.1 23 209-231 47-69 (390)
412 2a9k_A RAS-related protein RAL 91.7 0.094 3.2E-06 43.8 2.9 24 209-232 18-41 (187)
413 3eph_A TRNA isopentenyltransfe 91.7 0.098 3.3E-06 50.4 3.3 22 210-231 3-24 (409)
414 2vf7_A UVRA2, excinuclease ABC 91.7 0.55 1.9E-05 49.7 9.3 58 285-347 741-804 (842)
415 3bwd_D RAC-like GTP-binding pr 91.6 0.096 3.3E-06 43.7 2.9 24 209-232 8-31 (182)
416 3bc1_A RAS-related protein RAB 91.6 0.088 3E-06 44.3 2.7 24 209-232 11-34 (195)
417 2h92_A Cytidylate kinase; ross 91.6 0.076 2.6E-06 46.3 2.4 22 210-231 4-25 (219)
418 4bas_A ADP-ribosylation factor 91.6 0.12 4E-06 43.9 3.5 25 208-232 16-40 (199)
419 3gqb_B V-type ATP synthase bet 91.6 0.13 4.4E-06 50.3 4.1 103 198-302 137-261 (464)
420 2fz4_A DNA repair protein RAD2 91.6 0.42 1.4E-05 42.4 7.3 103 212-328 111-226 (237)
421 1vg8_A RAS-related protein RAB 91.6 0.12 4E-06 44.3 3.5 25 208-232 7-31 (207)
422 2cjw_A GTP-binding protein GEM 91.6 0.095 3.2E-06 44.7 2.9 23 209-231 6-28 (192)
423 2bov_A RAla, RAS-related prote 91.6 0.097 3.3E-06 44.7 2.9 25 208-232 13-37 (206)
424 2qu8_A Putative nucleolar GTP- 91.5 0.13 4.4E-06 45.1 3.8 25 208-232 28-52 (228)
425 2oil_A CATX-8, RAS-related pro 91.5 0.091 3.1E-06 44.5 2.7 24 209-232 25-48 (193)
426 1zj6_A ADP-ribosylation factor 91.5 0.21 7.1E-06 42.0 5.0 25 208-232 15-39 (187)
427 2efe_B Small GTP-binding prote 91.5 0.1 3.4E-06 43.5 2.9 24 209-232 12-35 (181)
428 2www_A Methylmalonic aciduria 91.5 0.11 3.9E-06 49.1 3.6 24 208-231 73-96 (349)
429 1u0l_A Probable GTPase ENGC; p 91.5 0.15 5.2E-06 47.1 4.3 33 194-231 159-191 (301)
430 2ck3_A ATP synthase subunit al 91.5 0.13 4.6E-06 50.8 4.1 106 197-303 151-273 (510)
431 2g6b_A RAS-related protein RAB 91.4 0.1 3.5E-06 43.3 2.9 24 209-232 10-33 (180)
432 2qnr_A Septin-2, protein NEDD5 91.4 0.083 2.9E-06 48.9 2.5 21 211-231 20-40 (301)
433 3v9p_A DTMP kinase, thymidylat 91.4 0.17 5.7E-06 44.8 4.4 23 209-231 25-47 (227)
434 1ksh_A ARF-like protein 2; sma 91.4 0.14 4.8E-06 43.0 3.7 26 208-233 17-42 (186)
435 1zbd_A Rabphilin-3A; G protein 91.3 0.11 3.6E-06 44.5 2.9 24 209-232 8-31 (203)
436 1ega_A Protein (GTP-binding pr 91.3 0.1 3.5E-06 48.3 3.0 25 208-232 7-31 (301)
437 3tkl_A RAS-related protein RAB 91.3 0.16 5.6E-06 42.8 4.1 25 208-232 15-39 (196)
438 2atv_A RERG, RAS-like estrogen 91.3 0.099 3.4E-06 44.5 2.7 24 209-232 28-51 (196)
439 3gmt_A Adenylate kinase; ssgci 91.3 0.099 3.4E-06 46.4 2.7 23 209-231 8-30 (230)
440 2fg5_A RAB-22B, RAS-related pr 91.3 0.11 3.6E-06 44.2 2.9 24 209-232 23-46 (192)
441 1gwn_A RHO-related GTP-binding 91.2 0.11 3.6E-06 45.0 2.8 25 208-232 27-51 (205)
442 2x77_A ADP-ribosylation factor 91.2 0.17 6E-06 42.5 4.2 25 208-232 21-45 (189)
443 2b6h_A ADP-ribosylation factor 91.2 0.11 3.8E-06 44.2 2.9 24 209-232 29-52 (192)
444 2axn_A 6-phosphofructo-2-kinas 91.2 0.12 4E-06 51.8 3.5 23 209-231 35-57 (520)
445 1moz_A ARL1, ADP-ribosylation 91.2 0.11 3.7E-06 43.4 2.8 25 208-232 17-41 (183)
446 3fdi_A Uncharacterized protein 91.2 0.11 3.8E-06 45.0 2.9 22 210-231 7-28 (201)
447 2q3h_A RAS homolog gene family 91.2 0.11 3.9E-06 44.2 3.0 24 209-232 20-43 (201)
448 3oes_A GTPase rhebl1; small GT 91.1 0.1 3.6E-06 44.6 2.7 25 208-232 23-47 (201)
449 2ew1_A RAS-related protein RAB 91.1 0.1 3.6E-06 44.9 2.7 24 209-232 26-49 (201)
450 3lv8_A DTMP kinase, thymidylat 91.1 0.24 8.1E-06 44.1 5.1 52 209-261 27-78 (236)
451 2gf9_A RAS-related protein RAB 91.1 0.12 4E-06 43.7 2.9 24 209-232 22-45 (189)
452 3clv_A RAB5 protein, putative; 91.1 0.11 3.6E-06 44.1 2.7 24 209-232 7-30 (208)
453 3dz8_A RAS-related protein RAB 91.1 0.11 3.7E-06 44.1 2.7 24 209-232 23-46 (191)
454 3reg_A RHO-like small GTPase; 91.1 0.12 4E-06 43.9 2.9 24 209-232 23-46 (194)
455 2fh5_B SR-beta, signal recogni 91.1 0.12 4.1E-06 44.6 3.0 24 209-232 7-30 (214)
456 3cr8_A Sulfate adenylyltranfer 91.1 0.099 3.4E-06 52.7 2.8 23 209-231 369-391 (552)
457 3g5u_A MCG1178, multidrug resi 91.1 0.93 3.2E-05 50.4 10.8 127 211-354 418-598 (1284)
458 1g8f_A Sulfate adenylyltransfe 91.0 0.11 3.7E-06 51.8 3.0 24 208-231 394-417 (511)
459 4tmk_A Protein (thymidylate ki 91.0 0.26 8.9E-06 43.1 5.2 52 210-262 4-55 (213)
460 2a5j_A RAS-related protein RAB 91.0 0.12 4.1E-06 43.8 2.9 24 209-232 21-44 (191)
461 3k53_A Ferrous iron transport 91.0 0.14 4.8E-06 46.4 3.5 24 209-232 3-26 (271)
462 2obl_A ESCN; ATPase, hydrolase 91.0 0.11 3.8E-06 49.2 2.9 24 209-232 71-94 (347)
463 3mfy_A V-type ATP synthase alp 91.0 0.36 1.2E-05 48.3 6.6 53 197-254 216-268 (588)
464 1zd9_A ADP-ribosylation factor 91.0 0.11 3.8E-06 43.8 2.7 24 209-232 22-45 (188)
465 2o52_A RAS-related protein RAB 91.0 0.12 4.1E-06 44.2 2.9 24 209-232 25-48 (200)
466 2gza_A Type IV secretion syste 90.9 0.1 3.5E-06 49.7 2.6 22 210-231 176-197 (361)
467 3lxx_A GTPase IMAP family memb 90.9 0.15 5E-06 45.2 3.5 25 208-232 28-52 (239)
468 2j1l_A RHO-related GTP-binding 90.9 0.12 4.2E-06 44.8 2.9 25 208-232 33-57 (214)
469 1x3s_A RAS-related protein RAB 90.9 0.13 4.3E-06 43.4 2.9 24 209-232 15-38 (195)
470 2gf0_A GTP-binding protein DI- 90.8 0.16 5.5E-06 43.0 3.6 25 208-232 7-31 (199)
471 2il1_A RAB12; G-protein, GDP, 90.8 0.12 4.1E-06 43.9 2.7 24 209-232 26-49 (192)
472 1z06_A RAS-related protein RAB 90.8 0.13 4.3E-06 43.4 2.9 24 209-232 20-43 (189)
473 2p5s_A RAS and EF-hand domain 90.8 0.13 4.3E-06 44.0 2.9 25 208-232 27-51 (199)
474 4f4c_A Multidrug resistance pr 90.8 0.91 3.1E-05 50.6 10.5 23 209-231 444-466 (1321)
475 3kjh_A CO dehydrogenase/acetyl 90.8 0.24 8.1E-06 43.7 4.8 20 212-231 3-22 (254)
476 4hlc_A DTMP kinase, thymidylat 90.8 0.19 6.5E-06 43.7 4.1 50 210-262 3-52 (205)
477 2g3y_A GTP-binding protein GEM 90.8 0.13 4.3E-06 45.0 2.9 23 209-231 37-59 (211)
478 3ea0_A ATPase, para family; al 90.8 0.15 5.2E-06 45.0 3.5 24 208-231 3-27 (245)
479 3iev_A GTP-binding protein ERA 90.7 0.14 4.7E-06 47.5 3.3 26 207-232 8-33 (308)
480 2bcg_Y Protein YP2, GTP-bindin 90.7 0.13 4.4E-06 44.1 2.9 24 209-232 8-31 (206)
481 3k9g_A PF-32 protein; ssgcid, 90.7 0.13 4.6E-06 46.2 3.1 40 208-250 26-66 (267)
482 4dkx_A RAS-related protein RAB 90.7 0.13 4.4E-06 45.2 2.9 22 211-232 15-36 (216)
483 2h57_A ADP-ribosylation factor 90.6 0.11 3.9E-06 43.8 2.4 25 209-233 21-45 (190)
484 2npi_A Protein CLP1; CLP1-PCF1 90.5 0.1 3.6E-06 51.3 2.4 22 210-231 139-160 (460)
485 2h17_A ADP-ribosylation factor 90.5 0.12 4.2E-06 43.2 2.5 24 209-232 21-44 (181)
486 2atx_A Small GTP binding prote 90.5 0.14 4.6E-06 43.4 2.8 24 209-232 18-41 (194)
487 3cwq_A Para family chromosome 90.5 0.28 9.6E-06 42.5 4.9 39 211-252 2-41 (209)
488 1bif_A 6-phosphofructo-2-kinas 90.5 0.14 4.9E-06 50.5 3.3 23 209-231 39-61 (469)
489 4gzl_A RAS-related C3 botulinu 90.5 0.16 5.6E-06 43.6 3.3 24 209-232 30-53 (204)
490 2fv8_A H6, RHO-related GTP-bin 90.5 0.14 4.8E-06 44.0 2.9 24 209-232 25-48 (207)
491 2pt7_A CAG-ALFA; ATPase, prote 90.4 0.12 4E-06 48.6 2.5 110 210-337 172-281 (330)
492 3ch4_B Pmkase, phosphomevalona 90.4 0.19 6.6E-06 43.6 3.7 24 208-231 10-33 (202)
493 4dzz_A Plasmid partitioning pr 90.4 0.23 7.8E-06 42.5 4.2 39 210-250 2-41 (206)
494 2j0v_A RAC-like GTP-binding pr 90.4 0.14 4.8E-06 44.1 2.8 24 209-232 9-32 (212)
495 2hup_A RAS-related protein RAB 90.3 0.14 5E-06 43.8 2.9 25 208-232 28-52 (201)
496 2c61_A A-type ATP synthase non 90.3 0.12 3.9E-06 50.8 2.4 103 198-301 142-258 (469)
497 3f9v_A Minichromosome maintena 90.3 0.079 2.7E-06 54.0 1.3 21 211-231 329-349 (595)
498 2rcn_A Probable GTPase ENGC; Y 90.3 0.15 5.1E-06 48.5 3.1 23 210-232 216-238 (358)
499 2gco_A H9, RHO-related GTP-bin 90.3 0.15 5.1E-06 43.6 2.9 24 209-232 25-48 (201)
500 3cph_A RAS-related protein SEC 90.3 0.15 5.1E-06 43.8 2.9 24 209-232 20-43 (213)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=2.7e-28 Score=249.66 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=141.8
Q ss_pred ceecccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc--CcccccccCeeEEEEeCCCC--CHHHHHHHHHHH
Q 016120 189 NEFERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN--NDHVKFYFDCLAWVRVSIAY--DFGKMLDDIIKS 263 (394)
Q Consensus 189 ~Gr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~ 263 (394)
|||+.++++|.++|..+ +...++|+|+||||+||||||+.+|+ +.+++.+|++++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 34689999999999999999999998 67899999999999999985 899999999999
Q ss_pred hCCCCC--CccccCc-CHHHHHHHHHHHccCC-eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchh
Q 016120 264 VMPPSR--VSVIIGE-DYQLKKSILRDYLTNK-KYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEM 339 (394)
Q Consensus 264 l~~~~~--~~~~~~~-~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~ 339 (394)
++.... ...+.+. +...+...+++.|+++ ||||||||||+ .+.+ .+.. .+||+||||||++.++..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~-- 281 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----ELRLRCLVTTRDVEISNAA-- 281 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----HTTCEEEEEESBGGGGGGC--
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----cCCCEEEEEcCCHHHHHHc--
Confidence 987532 1122334 6778899999999996 99999999999 6644 1111 1699999999999999887
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
.....+|+ |++| +.++||+||.+.++.
T Consensus 282 ~~~~~~~~-----l~~L--~~~ea~~Lf~~~a~~ 308 (549)
T 2a5y_B 282 SQTCEFIE-----VTSL--EIDECYDFLEAYGMP 308 (549)
T ss_dssp CSCEEEEE-----CCCC--CHHHHHHHHHHTSCC
T ss_pred CCCCeEEE-----CCCC--CHHHHHHHHHHHhcC
Confidence 22456899 9999 999999999999543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=1.5e-24 Score=240.66 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=136.9
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-cccc-CeeEEEEeCCCCC--HHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYF-DCLAWVRVSIAYD--FGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~i~~~i~~ 262 (394)
.|+||+.++++|.++|...+.+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+..++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 204 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHH
Confidence 7999999999999999876667899999999999999999999996543 5556 5677999998654 4555777888
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHHHccCC--eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhc
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRDYLTNK--KYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEME 340 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~ 340 (394)
.+............+.+.+...++..+.++ ||||||||||+ ...|..+ .+||+||||||++.++..+ .
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~~~~~~--~ 274 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKSVTDSV--M 274 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTTTTTTC--C
T ss_pred HhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHHHHHhh--c
Confidence 887654322222237888999999999877 99999999999 6554432 5789999999999998654 2
Q ss_pred CCCceeeCCccCCCC-CCCChHHHHHHHHHHhCC
Q 016120 341 NGEKIRRDSVLFGGP-LIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 341 ~~~~~~~~~~~~l~~-L~~~~~~~~~Lf~~~~~~ 373 (394)
+....++ +++ | +.++||+||...++.
T Consensus 275 ~~~~~~~-----~~~~l--~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 275 GPKHVVP-----VESGL--GREKGLEILSLFVNM 301 (1249)
T ss_dssp SCBCCEE-----CCSSC--CHHHHHHHHHHHHTS
T ss_pred CCceEEE-----ecCCC--CHHHHHHHHHHhhCC
Confidence 5677888 996 9 999999999988653
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.90 E-value=7e-24 Score=223.88 Aligned_cols=168 Identities=16% Similarity=0.126 Sum_probs=133.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCe-eEEEEeCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC-LAWVRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~ 265 (394)
..+||+.++++|.++|...+ +.++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 45999999999999998643 4789999999999999999999998788999987 899999999998888888877542
Q ss_pred CCC---CCcc----ccCcCHHHHHHHHHHHc---cCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHh
Q 016120 266 PPS---RVSV----IIGEDYQLKKSILRDYL---TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLA 335 (394)
Q Consensus 266 ~~~---~~~~----~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~ 335 (394)
... .... ....+.+.+...+++.| .+||+||||||||+ .+.|+.+. +||+||||||++.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccChHHHH
Confidence 211 1000 00114456677777766 68999999999999 88887652 6899999999999987
Q ss_pred hchhcCCCceeeCCccCCC------CCCCChHHHHHHHHHHhCC
Q 016120 336 SLEMENGEKIRRDSVLFGG------PLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~------~L~~~~~~~~~Lf~~~~~~ 373 (394)
.+ ....+|. ++ +| +.+|||+||++.++.
T Consensus 280 ~l---~g~~vy~-----LeL~d~dL~L--S~eEA~eLF~~~~g~ 313 (1221)
T 1vt4_I 280 FL---SAATTTH-----ISLDHHSMTL--TPDEVKSLLLKYLDC 313 (1221)
T ss_dssp HH---HHHSSCE-----EEECSSSSCC--CHHHHHHHHHHHHCC
T ss_pred hc---CCCeEEE-----ecCccccCCc--CHHHHHHHHHHHcCC
Confidence 65 2334667 77 89 999999999998754
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=196.85 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=126.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-cccc-CeeEEEEeCCCCCHHHHHH---HHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYF-DCLAWVRVSIAYDFGKMLD---DII 261 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~---~i~ 261 (394)
.|+||+.++++|.++|.....+.++++|+||||+||||||+.++++.++ ..+| +.++|++++.. +...++. .++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~ 203 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLC 203 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHH
Confidence 8999999999999999865556889999999999999999999997655 7889 47999999876 3333333 344
Q ss_pred HHhCCCCCCccccCc-CHHHHHHHHHHHccC--CeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhch
Q 016120 262 KSVMPPSRVSVIIGE-DYQLKKSILRDYLTN--KKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLE 338 (394)
Q Consensus 262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~ 338 (394)
..++...... .... +.+.+...+...+.+ +++||||||||+ ...+. .+ .+||+||||||++.++..+
T Consensus 204 ~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~----~l---~~~~~ilvTsR~~~~~~~~- 273 (591)
T 1z6t_A 204 TRLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLK----AF---DSQCQILLTTRDKSVTDSV- 273 (591)
T ss_dssp HHHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHH----TT---CSSCEEEEEESCGGGGTTC-
T ss_pred HHhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHH----Hh---cCCCeEEEECCCcHHHHhc-
Confidence 4555321100 1122 677888888888865 789999999999 54433 33 4689999999999988766
Q ss_pred hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
....+. +-.+++| +.+++++||.+.++.
T Consensus 274 ---~~~~~~--v~~l~~L--~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 274 ---MGPKYV--VPVESSL--GKEKGLEILSLFVNM 301 (591)
T ss_dssp ---CSCEEE--EECCSSC--CHHHHHHHHHHHHTS
T ss_pred ---CCCceE--eecCCCC--CHHHHHHHHHHHhCC
Confidence 234444 0003689 999999999998764
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.50 E-value=8.6e-14 Score=111.85 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=69.0
Q ss_pred chhHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc--cccChHHHHHHHHHHHH
Q 016120 31 NLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEE--DVERADILEILEDINDF 108 (394)
Q Consensus 31 ~l~p~~~~l~s~~~~~~~~ll~~~~~~~~~~l~~~~~~~l~~L~~~L~~i~~~~l~~ae~~--~~~~~~~~~Wl~~l~~~ 108 (394)
++++++++|.+. +..++ .++.|++++++.|+++|+.|+++ |.+|+.+ +..++.++.|+++||++
T Consensus 2 ~v~~ll~KL~~l-------l~~E~------~l~~gv~~~i~~Lk~eL~~m~a~-L~da~~~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 2 AISNLIPKLGEL-------LTEEF------KLHKGVKKNIEDLGKELESMNAA-LIKIGEVPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp TTCSHHHHHHHH-------HHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-------HHHHH------HHHhchHHHHHHHHHHHHHHHHH-HHHHHHhccccCCHHHHHHHHHHHHH
Confidence 456677766664 11222 47899999999999999999999 9999987 56899999999999999
Q ss_pred hhhhHhHhhhhHHhhhhc
Q 016120 109 VHESEEAIDTFFINIMQQ 126 (394)
Q Consensus 109 a~d~eD~lD~~~~~~~~~ 126 (394)
+||+||+||+|.++....
T Consensus 68 aYD~ED~iD~f~~~~~~~ 85 (115)
T 3qfl_A 68 SYVIEDVVDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999988653
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.38 E-value=2.1e-12 Score=126.47 Aligned_cols=172 Identities=15% Similarity=0.067 Sum_probs=115.8
Q ss_pred ccceecccHHHHHHHH-hcC--C--CCceEEEE--EcCCCccHHHHHHHHhcCccccc-----ccC-eeEEEEeCCCCCH
Q 016120 187 DINEFERGREELFDLL-IEG--P--SGLAVVAI--LDSSGFDKTVFTADTYNNDHVKF-----YFD-CLAWVRVSIAYDF 253 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L-~~~--~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~~-----~F~-~~~wv~vs~~~~~ 253 (394)
.++||+.+++++.+.| ... + .....+.| +|++|+||||||+.+++. ... .|. ..+|+++....+.
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCH
Confidence 8999999999999988 421 1 23455666 999999999999999983 322 123 3568887777788
Q ss_pred HHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC--C-----chhHHHHHhhCCCC---C-
Q 016120 254 GKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD--N-----SEIWSDLEELLPDD---E- 319 (394)
Q Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~--~-----~~~~~~l~~~l~~~---~- 319 (394)
..++..++..++...+ ... +...+...+.+.+. +++++|||||++. . .+.+..+...+... .
T Consensus 101 ~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQ----VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp HHHHHHHHHHHTCCCC----CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred HHHHHHHHHHhCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 9999999999876532 112 45566677777764 6899999999987 2 13344333333211 2
Q ss_pred -CCcEEEEecCChHHHhhch------hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 320 -NGSRVLITVTDPDLLASLE------MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 320 -~gs~IivTTR~~~v~~~~~------~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+..||+||+...+...+. .......++ ++|| +.++.+++|...+
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~-----l~~l--~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH-----LPAY--KSRELYTILEQRA 228 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeee-----eCCC--CHHHHHHHHHHHH
Confidence 3445887887665432220 011122378 9999 9999999997653
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=2.5e-11 Score=117.75 Aligned_cols=172 Identities=14% Similarity=-0.025 Sum_probs=116.1
Q ss_pred ccceecccHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHhcCcccccc--------cCeeEEEEeCCCC-CHHH
Q 016120 187 DINEFERGREELFDLLIE--GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--------FDCLAWVRVSIAY-DFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~~ 255 (394)
+++||+.+++++.+++.. .....+.+.|+|++|+|||+||+.+++. .... ....+|++.+... +...
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 799999999999988864 2334568899999999999999999983 3221 2346788877766 7888
Q ss_pred HHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-Cchh-HHH-HHhhCCCCCCCcEEEEecCCh
Q 016120 256 MLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEI-WSD-LEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~-~~~-l~~~l~~~~~gs~IivTTR~~ 331 (394)
++..++..+.+... .... +...+...+.+.+..++.+|||||++. .... .+. +...+... .+..||+||+..
T Consensus 99 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 99 VLSSLAGKLTGFSV---PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHCSCC---CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHHhcCCCC---CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 88998888833221 0122 456677778888877666999999987 1111 222 22222212 577889898875
Q ss_pred HHHhhch---hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 332 DLLASLE---MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 332 ~v~~~~~---~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.....+. .......++ ++|+ +.++...+|.+.+
T Consensus 175 ~~~~~l~~~l~sr~~~~i~-----l~~l--~~~~~~~il~~~~ 210 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVI-----FKPY--DAEQLKFILSKYA 210 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEE-----ECCC--CHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEE-----ECCC--CHHHHHHHHHHHH
Confidence 3211110 001123788 9999 9999999999874
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.25 E-value=4.4e-11 Score=115.77 Aligned_cols=172 Identities=12% Similarity=-0.014 Sum_probs=115.8
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccc------cCeeEEEEeCCCCCHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY------FDCLAWVRVSIAYDFGKMLD 258 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~i~~ 258 (394)
.++||+.+++++.+++... ......+.|+|++|+||||||+.+++. .... -...+|++.....+...++.
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 8999999999999988542 334567889999999999999999973 3221 12456888888888999999
Q ss_pred HHHHHhCCCCCCccccCc-CHHHHHHHHHHHc--cCCeEEEEEeCCCC-Cch--hHHHH---HhhCCCC--CCCcEEEEe
Q 016120 259 DIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVFD-NSE--IWSDL---EELLPDD--ENGSRVLIT 327 (394)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~~-~~~--~~~~l---~~~l~~~--~~gs~IivT 327 (394)
.++..++...+ ... +...+...+.+.+ .+++.+||||+++. ... ..+.+ ....... ..+..+|.|
T Consensus 98 ~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 98 AIAEAVGVRVP----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHSCCCC----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 99999976533 122 5666677777776 35689999999987 111 22223 2222111 335567777
Q ss_pred cCChHHHh----hchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 328 VTDPDLLA----SLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 328 TR~~~v~~----~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
|+...... .....-....+. ++|+ +.++...++.+.+
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~-----l~~l--~~~~~~~il~~~~ 214 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELV-----FPPY--TAPQLRDILETRA 214 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECC-----BCCC--CHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEe-----eCCC--CHHHHHHHHHHHH
Confidence 77653211 110001124677 9999 9999999998874
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.23 E-value=2e-10 Score=111.43 Aligned_cols=172 Identities=19% Similarity=0.203 Sum_probs=122.8
Q ss_pred ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcCccccccc-CeeEEEEeCCCCCHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF-DCLAWVRVSIAYDFGKMLDDII 261 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~ 261 (394)
.++||+.+++++.+++... .+..+.+.|+|++|+|||||++.+++ ...... ...+|++.+...+...++..++
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 7999999999999988652 22234889999999999999999987 333321 2457788778888889999999
Q ss_pred HHhCCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-CchhHHHHHhhCCCCC----CCcEEEEecCChHH
Q 016120 262 KSVMPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-NSEIWSDLEELLPDDE----NGSRVLITVTDPDL 333 (394)
Q Consensus 262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~----~gs~IivTTR~~~v 333 (394)
..++...+ ... +...+...+...+. +++.+||||+++. +...+..+...+.... .+..||+||+....
T Consensus 96 ~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 96 RSLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHhCccCC----CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 98876432 122 56666666666663 5689999999987 5566666666654322 36778888887654
Q ss_pred Hhhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 334 LASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 334 ~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
...+.. .-....++ ++|+ +.++...++...+
T Consensus 172 ~~~l~~~~~~r~~~~~i~-----~~pl--~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIR-----FSPY--TKDQIFDILLDRA 206 (389)
T ss_dssp HHTSCHHHHHHHTTCEEE-----CCCC--BHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEE-----eCCC--CHHHHHHHHHHHH
Confidence 433310 00123688 9999 9999999998874
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=2.4e-11 Score=117.53 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=116.6
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCccccccc---CeeEEEEeCCCCCHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF---DCLAWVRVSIAYDFGKMLDDII 261 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~i~~~i~ 261 (394)
+++||+.+++.+.+++... ......+.|+|++|+||||||+.+++ .....+ ...+|++.....+...++..++
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999988752 33456888999999999999999998 443332 2457887766667778888888
Q ss_pred HHhCCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-C----chhHHHHHhhCCC-CCCCcEEEEecCChH
Q 016120 262 KSVMPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-N----SEIWSDLEELLPD-DENGSRVLITVTDPD 332 (394)
Q Consensus 262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~----~~~~~~l~~~l~~-~~~gs~IivTTR~~~ 332 (394)
..++...+ ... +.......+.+.+. +++.+||||+++. . ...+..+...+.. ...+..+|+||+...
T Consensus 99 ~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 99 ESLDVKVP----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTTSCCCC----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 87765432 122 45666666666664 4589999999976 1 3344445443321 233456788887764
Q ss_pred HHhhch----hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 333 LLASLE----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 333 v~~~~~----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
....+. ..-....++ ++|+ +.++..+++.+.+
T Consensus 175 ~~~~~~~~~~~r~~~~~i~-----l~~l--~~~~~~~il~~~~ 210 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEII-----FPPY--NAEELEDILTKRA 210 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEE-----ECCC--CHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEE-----eCCC--CHHHHHHHHHHHH
Confidence 332221 001124788 9999 9999999998764
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.20 E-value=8.3e-11 Score=112.20 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=109.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCC------CHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAY------DFGKMLDDI 260 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~i~~~i 260 (394)
.++||+.+++++.+++..+ +++.|+|++|+|||||++.+++. . . .+|+++.... +...++..+
T Consensus 13 ~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHHHHHH
Confidence 7999999999999988753 68899999999999999999873 2 1 6777765432 556666666
Q ss_pred HHHhCCC------------C-CCccccCc-CHHHHHHHHHHHccC-CeEEEEEeCCCC-Cc-------hhHHHHHhhCCC
Q 016120 261 IKSVMPP------------S-RVSVIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVFD-NS-------EIWSDLEELLPD 317 (394)
Q Consensus 261 ~~~l~~~------------~-~~~~~~~~-~~~~~~~~l~~~l~~-kr~LlVlDdv~~-~~-------~~~~~l~~~l~~ 317 (394)
...+... . ......+. +...+...+.+.... ++++|||||++. +. ..+..+......
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 6655420 0 00000112 566666777666643 389999999987 21 223333332221
Q ss_pred CCCCcEEEEecCChHH-Hhh---chh----c-CCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 318 DENGSRVLITVTDPDL-LAS---LEM----E-NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 318 ~~~gs~IivTTR~~~v-~~~---~~~----~-~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.++.++|+|++...+ ... ... . .....++ +.|| +.+++.+++.+.++
T Consensus 162 -~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~-----l~pl--~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 162 -LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVL-----VKPF--DKDTSVEFLKRGFR 217 (350)
T ss_dssp -CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred -cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceee-----CCCC--CHHHHHHHHHHHHH
Confidence 246789999987654 221 000 0 1124677 9999 99999999987653
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.17 E-value=1.4e-10 Score=110.76 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=102.6
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC-----CCHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA-----YDFGKMLDDII 261 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i~ 261 (394)
.++||+.+++.|.+ +.. +++.|+|++|+|||+|++.+.+. ... ..+|+++... .+....+..+.
T Consensus 14 ~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 79999999999998 643 58999999999999999999873 322 2578877642 34444444444
Q ss_pred HHhC--------------CCC----CC-cccc-----Cc-CHHHHHHHHHHHccCCeEEEEEeCCCC-C----chhHHHH
Q 016120 262 KSVM--------------PPS----RV-SVII-----GE-DYQLKKSILRDYLTNKKYFIVLDDVFD-N----SEIWSDL 311 (394)
Q Consensus 262 ~~l~--------------~~~----~~-~~~~-----~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~----~~~~~~l 311 (394)
..+. .-. +. .... .. ....+...+.+..+ ++++|||||++. + .+.+..+
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4331 000 00 0000 12 45556655555433 499999999977 1 2223333
Q ss_pred HhhCCCCCCCcEEEEecCChHH-Hhh---ch----hcC-CCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 312 EELLPDDENGSRVLITVTDPDL-LAS---LE----MEN-GEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 312 ~~~l~~~~~gs~IivTTR~~~v-~~~---~~----~~~-~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.... ....+.++|+|++.... ... .. ..+ ....++ +.|| +.+++.+++.+.+
T Consensus 162 ~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~-----l~~l--~~~e~~~~l~~~~ 222 (357)
T 2fna_A 162 AYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVE-----LKPF--SREEAIEFLRRGF 222 (357)
T ss_dssp HHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEE-----ECCC--CHHHHHHHHHHHH
T ss_pred HHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceee-----cCCC--CHHHHHHHHHHHH
Confidence 3222 22246789999998653 222 00 001 125677 9999 9999999998765
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=3.6e-10 Score=101.41 Aligned_cols=169 Identities=12% Similarity=0.026 Sum_probs=98.5
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++||+..++.+..++.... ....+.|+|++|+||||||+.+++. ....+.... ........ ...+......
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~----~~~~~~~~-~~~~~~~~~~ 95 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITA----TPCGVCDN-CREIEQGRFV 95 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCS----SCCSCSHH-HHHHHTTCCS
T ss_pred HHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC----CCCcccHH-HHHHhccCCc
Confidence 89999999999999997653 2357889999999999999999873 222111000 00000000 0011100000
Q ss_pred CCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120 267 PSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM 339 (394)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~ 339 (394)
.......... ....+...+... ..+++.+||+||++. +...++.+...+.....+..+|+||+... +...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l-- 173 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI-- 173 (250)
T ss_dssp SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH--
T ss_pred ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH--
Confidence 0000000000 122222222221 134679999999977 56677777777665566788888887653 22222
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
......++ ++++ +.++..+++.+.+.
T Consensus 174 ~~r~~~i~-----l~~l--~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 174 LSRCLQFH-----LKAL--DVEQIRHQLEHILN 199 (250)
T ss_dssp HTTSEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred HHHhhhcc-----CCCC--CHHHHHHHHHHHHH
Confidence 12346788 9999 99999999988753
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.06 E-value=1.6e-09 Score=95.86 Aligned_cols=147 Identities=9% Similarity=0.072 Sum_probs=96.6
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-cC-eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-FD-CLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++ ..... +. ..+.++.+.......+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVV-------- 85 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHH--------
T ss_pred HHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHH--------
Confidence 89999999999999997653 23388999999999999999987 33222 22 2233443333222222
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHc------cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhh
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYL------TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLAS 336 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~ 336 (394)
...+.... .+++.+||+||++. ....++.+...+.....++++|+||+... +...
T Consensus 86 -----------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 86 -----------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp -----------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -----------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHH
Confidence 22222221 25789999999988 44556666665554456778888887653 1111
Q ss_pred chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+ ......++ +.++ +.++...++.+.+
T Consensus 149 l--~~r~~~i~-----~~~~--~~~~~~~~l~~~~ 174 (226)
T 2chg_A 149 I--QSRCAVFR-----FKPV--PKEAMKKRLLEIC 174 (226)
T ss_dssp H--HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred H--HHhCceee-----cCCC--CHHHHHHHHHHHH
Confidence 1 12234788 9999 9999999998875
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=4.5e-09 Score=99.06 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=95.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-ccC-eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-YFD-CLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|++..++.+.+++..+. .+.+.++|++|+|||++|+.+++. ... .+. ..++++.+....... ..+++..+
T Consensus 22 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~ 96 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRNQIKHF 96 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred HHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHHHHHHH
Confidence 89999999999999987653 223889999999999999999873 211 111 233444333222211 11111111
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchhcC
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEMEN 341 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~ 341 (394)
... ...+ .+++.++|+||++. +...++.+...+.....++++|+||.... +...+ .+
T Consensus 97 ~~~------------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l--~s 156 (323)
T 1sxj_B 97 AQK------------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL--QS 156 (323)
T ss_dssp HHB------------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH--HT
T ss_pred Hhc------------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH--Hh
Confidence 100 0011 34689999999987 44555555555544455678888887642 22222 12
Q ss_pred CCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 342 GEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 342 ~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
....++ +.++ +.++...++.+.+
T Consensus 157 r~~~i~-----~~~~--~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 157 QCAILR-----YSKL--SDEDVLKRLLQII 179 (323)
T ss_dssp TSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred hceEEe-----ecCC--CHHHHHHHHHHHH
Confidence 345788 9999 9999999998764
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=1.9e-08 Score=94.88 Aligned_cols=151 Identities=13% Similarity=0.062 Sum_probs=94.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-c-CeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-F-DCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+++. .... + ...+.++.+......
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~---------- 91 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN---------- 91 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH----------
T ss_pred HhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH----------
Confidence 89999999999999887653 334889999999999999999873 2211 1 112333322210000
Q ss_pred CCCCCCccccCcCHHHHHHHHHHH--c-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDY--L-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM 339 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~ 339 (394)
............ + .+++.++|+|+++. +...++.+...+.....++++|+||.... +...+
T Consensus 92 ------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l-- 157 (327)
T 1iqp_A 92 ------------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI-- 157 (327)
T ss_dssp ------------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH--
T ss_pred ------------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHH--
Confidence 001111111111 1 25788999999987 45666777666655456788888887653 11111
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
......++ +.|+ +.++...++.+.+.
T Consensus 158 ~sr~~~~~-----~~~l--~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 158 QSRCAIFR-----FRPL--RDEDIAKRLRYIAE 183 (327)
T ss_dssp HHTEEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred HhhCcEEE-----ecCC--CHHHHHHHHHHHHH
Confidence 11234778 9999 99999999887643
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.4e-07 Score=86.32 Aligned_cols=174 Identities=7% Similarity=-0.029 Sum_probs=104.8
Q ss_pred ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCccccc---ccC--eeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKF---YFD--CLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~--~~~wv~vs~~~~~~~i~~~ 259 (394)
.+.||+++.++|...|... +...+.+-|+|++|+|||++++.+++...... ... ..+.++.....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888653 34567788999999999999999998422111 111 3467777777788899999
Q ss_pred HHHHhCCCCCCccccCcCHHHHHHHHHHH--ccCCeEEEEEeCCCCCchhHHHHHhhCC----CCCCCcEEEEecCChH-
Q 016120 260 IIKSVMPPSRVSVIIGEDYQLKKSILRDY--LTNKKYFIVLDDVFDNSEIWSDLEELLP----DDENGSRVLITVTDPD- 332 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~l~~~l~----~~~~gs~IivTTR~~~- 332 (394)
|++++.+... ........+...+... -.+++++++||++.. ...-+-+...+. ...+. .||.++...+
T Consensus 101 I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~-l~~q~~L~~l~~~~~~~~s~~-~vI~i~n~~d~ 175 (318)
T 3te6_A 101 IWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPEN-LLSEKILQYFEKWISSKNSKL-SIICVGGHNVT 175 (318)
T ss_dssp HHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS-SCCTHHHHHHHHHHHCSSCCE-EEEEECCSSCC
T ss_pred HHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHH-hhcchHHHHHHhcccccCCcE-EEEEEecCccc
Confidence 9999976532 0111344444444432 245789999999987 212222222221 11222 2333343321
Q ss_pred ----HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 333 ----LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 333 ----v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
+.....+.-....+. ++|. +.++-.+++.+++.
T Consensus 176 ~~~~L~~~v~SR~~~~~i~-----F~pY--t~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIK-----LNKV--DKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEE-----eCCC--CHHHHHHHHHHHHH
Confidence 111110001225688 9999 99999999988743
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.62 E-value=4.4e-08 Score=84.39 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=38.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+++||+..++++.+.+.... ...+.|+|++|+|||+||+.+++.
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999987642 456789999999999999999873
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.50 E-value=1e-06 Score=84.58 Aligned_cols=168 Identities=12% Similarity=-0.006 Sum_probs=94.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|++..++.+.+.+..+. ....+.|+|++|+||||+|+.+.+.......+. ...+........+......
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 88 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRFV 88 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCCS
T ss_pred hccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCCC
Confidence 89999999999999987643 234678999999999999999976321111100 0000000000111100000
Q ss_pred CCCC---ccccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120 267 PSRV---SVIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM 339 (394)
Q Consensus 267 ~~~~---~~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~ 339 (394)
.... ...... +...+...+... ..+++.++|+||+.. +...++.+...+.....+..+|++|.... +...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l-- 166 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI-- 166 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH--
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH--
Confidence 0000 000011 233332222211 135678999999987 55666777766655455667777776542 22222
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+....++ +.++ +.++...++.+.+
T Consensus 167 ~sr~~~i~-----~~~l--~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 167 LSRCLQFH-----LKAL--DVEQIRHQLEHIL 191 (373)
T ss_dssp HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred HhheeEee-----CCCC--CHHHHHHHHHHHH
Confidence 12346788 9999 9999999888764
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.49 E-value=4.1e-07 Score=85.31 Aligned_cols=151 Identities=9% Similarity=0.047 Sum_probs=94.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-ccccC-eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYFD-CLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|++..++.+.+++..+. .+.+.++|++|+|||++|+.+++. . ...+. ..+.++.+.....
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~----------- 82 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGI----------- 82 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCT-----------
T ss_pred HHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccCh-----------
Confidence 89999999999888886643 333789999999999999999873 2 11111 1223333321110
Q ss_pred CCCCCCccccCcCHHHHHHHHHHH--c-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDY--L-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM 339 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~ 339 (394)
+ ............ + .+++.++|+|++.. +....+.+...+.....++++|+||.... +...+
T Consensus 83 ----------~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l-- 149 (319)
T 2chq_A 83 ----------D-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI-- 149 (319)
T ss_dssp ----------T-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH--
T ss_pred ----------H-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH--
Confidence 0 111111111111 1 25688999999987 45556667777665556778888876643 22222
Q ss_pred cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
......++ +.++ +.++...++.+.+.
T Consensus 150 ~sr~~~i~-----~~~~--~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 150 QSRCAVFR-----FKPV--PKEAMKKRLLEICE 175 (319)
T ss_dssp HTTCEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred HhhCeEEE-----ecCC--CHHHHHHHHHHHHH
Confidence 12345788 9999 99999998887653
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.48 E-value=4.9e-07 Score=83.78 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=89.2
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
+++|.+..++++.+.+... -.....+.|+|++|+|||+||+.+++ .....| +.+..+.-
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~~---~~v~~~~~----- 87 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNATF---IRVVGSEL----- 87 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCEE---EEEEGGGG-----
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehHHH-----
Confidence 8999999999998887431 12345678999999999999999988 332222 22222111
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------ch---hHHHHHhhCC--CC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SE---IWSDLEELLP--DD 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~---~~~~l~~~l~--~~ 318 (394)
.... .......+...+......++.+|+||++.. . .. .+..+...+. ..
T Consensus 88 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 88 ---------VKKF-----IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp ---------CCCS-----TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred ---------HHhc-----cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0000 010222223333333345678999999964 0 11 1222222221 22
Q ss_pred CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120 319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~ 374 (394)
..+..||.||..+......-.. .-...+. +++. +.++..++|...+...
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~-----~~~p--~~~~r~~il~~~~~~~ 204 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIE-----VPAP--DEKGRLEILKIHTRKM 204 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEE-----CCCC--CHHHHHHHHHHHHTTS
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEE-----ECCC--CHHHHHHHHHHHHhcC
Confidence 3356677788765321110000 1234677 9999 9999999998876543
No 22
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.35 E-value=1.7e-06 Score=81.06 Aligned_cols=158 Identities=10% Similarity=0.041 Sum_probs=88.0
Q ss_pred ccceecccHHHHHHHHhcC-------------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCH
Q 016120 187 DINEFERGREELFDLLIEG-------------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDF 253 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 253 (394)
+++|.+..++.+.+.+... ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 5889988888887665421 234456889999999999999988763111111111123333210
Q ss_pred HHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcE
Q 016120 254 GKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------NSEIWSDLEELLPDDENGSR 323 (394)
Q Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~ 323 (394)
.+.... ...........+... +..+|+||++.. +......+...+.....+..
T Consensus 109 ---------~l~~~~-----~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVGQY-----IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCCSS-----TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ---------Hhhhhc-----ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 111100 011222222222222 345999999983 13444555555544455667
Q ss_pred EEEecCChHHHhh------chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 324 VLITVTDPDLLAS------LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 324 IivTTR~~~v~~~------~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
||.||........ +. ......++ ++++ +.++-..++.+.+.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~-~R~~~~i~-----~~~~--~~~~~~~il~~~l~ 218 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFR-SRIAHHIE-----FPDY--SDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHH-HHEEEEEE-----ECCC--CHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHH-HhCCeEEE-----cCCc--CHHHHHHHHHHHHH
Confidence 7888764322111 10 01136777 9999 99999999987743
No 23
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.30 E-value=1.7e-06 Score=71.88 Aligned_cols=113 Identities=9% Similarity=-0.106 Sum_probs=65.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
+++|+...+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.... ..... + ++.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc-------------
Confidence 4789999999998887542222334679999999999999999874211 11122 3 544432211
Q ss_pred CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC
Q 016120 267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD 330 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 330 (394)
. ..... +... +.-.|+||++.. +......+...+.......+||.||..
T Consensus 66 --~-------~~~~~---~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --P-------QLNDF---IALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --S-------CHHHH---HHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --h-------hhhcH---HHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0 11111 1111 234789999988 555556666655444445567776654
No 24
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=2.7e-06 Score=84.11 Aligned_cols=153 Identities=13% Similarity=0.136 Sum_probs=88.0
Q ss_pred ccc-eeccc--HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccC--eeEEEEeCCCCCHHHHHHHHH
Q 016120 187 DIN-EFERG--REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD--CLAWVRVSIAYDFGKMLDDII 261 (394)
Q Consensus 187 ~~~-Gr~~~--~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~ 261 (394)
+|+ |.... ...+......... ...+.|+|++|+||||||+.+++ .....+. ..++++. ..+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHH
Confidence 565 64332 2333333333222 56788999999999999999998 4443332 2345543 23344444
Q ss_pred HHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc--hhHHHHHhhCCC-CCCCcEEEEecCCh------
Q 016120 262 KSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS--EIWSDLEELLPD-DENGSRVLITVTDP------ 331 (394)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~--~~~~~l~~~l~~-~~~gs~IivTTR~~------ 331 (394)
..+... ... .+...+..+.-+|+|||++. .. ...+.+...+.. ...|..||+||.++
T Consensus 177 ~~~~~~---------~~~----~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 177 DSMKEG---------KLN----EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHTT---------CHH----HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHcc---------cHH----HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 444322 111 22333333677999999976 22 233334333321 13467788888763
Q ss_pred ---HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 332 ---DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 332 ---~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+...+ ....++. ++++ +.++...++.+.+
T Consensus 244 l~~~L~sR~---~~g~~i~-----l~~p--~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 244 FQDRLVSRF---QMGLVAK-----LEPP--DEETRKSIARKML 276 (440)
T ss_dssp CCHHHHHHH---HSSBCCB-----CCCC--CHHHHHHHHHHHH
T ss_pred HHHHHHhhc---cCCeEEE-----eCCC--CHHHHHHHHHHHH
Confidence 222222 2235677 9999 9999999998875
No 25
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.27 E-value=1.1e-05 Score=73.45 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=84.2
Q ss_pred ccceecccHHHHHHHHh---cCC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLI---EGP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..++++.+.+. ..+ ...+.+.|+|++|+|||++|+.+++ +...+ .+.++.+.-.+
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~---- 77 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVE---- 77 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSS----
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHh----
Confidence 78998887777765542 211 2345677999999999999999988 33322 23333332111
Q ss_pred HHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCCCc-----------------hhHHHHHhhCCC-
Q 016120 257 LDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDNS-----------------EIWSDLEELLPD- 317 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~~l~~~l~~- 317 (394)
. +.. ....+...+.......+.+|+||++.. . .....+...+..
T Consensus 78 ----------~------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~-l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 78 ----------V------IGGLGAARVRSLFKEARARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp ----------S------STTHHHHHHHHHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHTC
T ss_pred ----------h------ccChhHHHHHHHHHHHHhcCCeEEEEeCcch-hhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 0 011 222333333333345679999999986 1 112223222221
Q ss_pred -CCCCcEEEEecCChHHH-hhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 318 -DENGSRVLITVTDPDLL-ASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 318 -~~~gs~IivTTR~~~v~-~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
...+..||.||..+... ...-. ..-...+. +++. +.++-.+++...+.
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~-----i~~p--~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVF-----IDLP--TLQERREIFEQHLK 191 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEE-----CCSC--CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEE-----eCCc--CHHHHHHHHHHHHH
Confidence 22345666677654321 11100 01235667 8899 99999999887643
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.25 E-value=6.7e-07 Score=80.13 Aligned_cols=142 Identities=10% Similarity=0.045 Sum_probs=79.0
Q ss_pred ccceec---ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFE---RGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~---~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|.+ ..++.+..++... ....+.|+|++|+||||||+.+++ ..........|++.+.-...
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~---------- 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI---------- 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS----------
T ss_pred hccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH----------
Confidence 677633 4445555554432 356788999999999999999987 33333334566655331100
Q ss_pred hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cchh--HHHHHhhCCCC-CCC-cEEEEecCChH------
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEI--WSDLEELLPDD-ENG-SRVLITVTDPD------ 332 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~--~~~l~~~l~~~-~~g-s~IivTTR~~~------ 332 (394)
..... +.+ .++.+||+||++. .... .+.+...+... ..+ .++|+||+...
T Consensus 95 ----------~~~~~--------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 ----------STALL--------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ----------CGGGG--------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ----------HHHHH--------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 00000 001 3467899999987 2222 23333322111 122 24777776321
Q ss_pred ---HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 333 ---LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 333 ---v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+...+ ....+++ ++++ +.++..+++.+.+
T Consensus 156 ~~~l~~r~---~~~~~i~-----l~~~--~~~~~~~~l~~~~ 187 (242)
T 3bos_A 156 LPDLVSRM---HWGLTYQ-----LQPM--MDDEKLAALQRRA 187 (242)
T ss_dssp CHHHHHHH---HHSEEEE-----CCCC--CGGGHHHHHHHHH
T ss_pred hhhhhhHh---hcCceEE-----eCCC--CHHHHHHHHHHHH
Confidence 11111 1126788 9999 9999999998875
No 27
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=5.2e-06 Score=79.23 Aligned_cols=165 Identities=10% Similarity=0.050 Sum_probs=87.7
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC---ccccc-ccCe--------------------e
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN---DHVKF-YFDC--------------------L 242 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~~-~F~~--------------------~ 242 (394)
+++|.+...+.+.+++...+.... +.|+|+.|+||||+|+.+... +.... .++. .
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 889999888888887723222233 889999999999999988762 11000 0010 1
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCC
Q 016120 243 AWVRVSIAY-DFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDEN 320 (394)
Q Consensus 243 ~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~ 320 (394)
+.+..+... .......+++..+..... ..... .+.. +.+++-++|||++.. +....+.+...+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ--------VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc--------ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 111111100 000012222222211110 00000 0000 233667999999988 55555556555543344
Q ss_pred CcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 321 GSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 321 gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
++.+|++|.+. .+...+ .+....++ +.++ +.++....+.+.+
T Consensus 164 ~~~~Il~t~~~~~l~~~l--~sR~~~~~-----~~~~--~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPI--KSQCLLIR-----CPAP--SDSEISTILSDVV 206 (354)
T ss_dssp TEEEEEEESCSCSSCHHH--HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH--HhhceEEe-----cCCc--CHHHHHHHHHHHH
Confidence 67777777653 232222 13346788 9999 9999999888764
No 28
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.24 E-value=3.7e-06 Score=79.40 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=85.0
Q ss_pred CcccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 185 RLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 185 ~~~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+.+++|.+..+..+.+++..+. ...++.+.|++|+|||++|+.+.+ .... ..+.++.+.. ...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~~---~~~~i~~~~~-~~~---------- 87 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVNA---DMMFVNGSDC-KID---------- 87 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTTE---EEEEEETTTC-CHH----------
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCC---CEEEEccccc-CHH----------
Confidence 3389999999999999998643 345677888899999999999987 3321 2344443331 111
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHc-----cCCeEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChH-HHhh
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYL-----TNKKYFIVLDDVFD-N-SEIWSDLEELLPDDENGSRVLITVTDPD-LLAS 336 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~ 336 (394)
.+...+.+.. .+++.+|++|++.. . ....+.+...+.....+.++|+||.... +...
T Consensus 88 ---------------~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~ 152 (324)
T 3u61_B 88 ---------------FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKP 152 (324)
T ss_dssp ---------------HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTT
T ss_pred ---------------HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHH
Confidence 1111122211 24788999999998 4 4455555554433334567888777643 1111
Q ss_pred chhcCCCceeeCCccCCCCCCCChHHH
Q 016120 337 LEMENGEKIRRDSVLFGGPLIRLKHEA 363 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~ 363 (394)
+ .+...+++ ++++ +.++-
T Consensus 153 l--~sR~~~i~-----~~~~--~~~e~ 170 (324)
T 3u61_B 153 L--QSRCRVIT-----FGQP--TDEDK 170 (324)
T ss_dssp H--HHHSEEEE-----CCCC--CHHHH
T ss_pred H--HhhCcEEE-----eCCC--CHHHH
Confidence 1 11224678 9999 87774
No 29
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.24 E-value=1.6e-06 Score=74.17 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=37.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|++..++.+.+.+... ....+.|+|++|+|||+||+.+++
T Consensus 23 ~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 7999999999999998764 245568999999999999999987
No 30
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.22 E-value=2.9e-06 Score=79.93 Aligned_cols=147 Identities=14% Similarity=0.045 Sum_probs=85.6
Q ss_pred ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|++..+..+..++... ......+.|+|++|+|||++|+.+++ ..... .++++.+....
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~~---~~~~~~~~~~~----------- 76 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGVN---LRVTSGPAIEK----------- 76 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTCC---EEEECTTTCCS-----------
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEeccccCC-----------
Confidence 8999999988888877531 12345678999999999999999987 33222 23443322211
Q ss_pred hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC------------------CCCcEE
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD------------------ENGSRV 324 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~------------------~~gs~I 324 (394)
...+...+...+ .+..+|+||++.. .......+...+... .++..+
T Consensus 77 --------------~~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 --------------PGDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp --------------HHHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred --------------hHHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 111211111111 2456899999987 344444444333211 023456
Q ss_pred EEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 325 LITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 325 ivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
|.||... .+...+. .....++. +.++ +.++...++.+.+.
T Consensus 142 i~~t~~~~~~~~~l~-~R~~~~i~-----l~~~--~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 142 IGATTRPGLITAPLL-SRFGIVEH-----LEYY--TPEELAQGVMRDAR 182 (324)
T ss_dssp EEEESCCSSCSCSTT-TTCSCEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHH-hcccEEEe-----cCCC--CHHHHHHHHHHHHH
Confidence 6665543 2222220 11135677 9999 99999998887753
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=5.3e-06 Score=82.08 Aligned_cols=145 Identities=13% Similarity=0.073 Sum_probs=84.9
Q ss_pred ccceecccH---HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC-CCHHHHHHHHHH
Q 016120 187 DINEFERGR---EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA-YDFGKMLDDIIK 262 (394)
Q Consensus 187 ~~~Gr~~~~---~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~ 262 (394)
+++|.+..+ ..+...+.... ...+.|+|++|+||||||+.+.+ .....| +.++.. .....
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~------- 90 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKE------- 90 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHH-------
T ss_pred HhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHH-------
Confidence 889988877 67777776653 46788999999999999999998 333322 222211 11111
Q ss_pred HhCCCCCCccccCcCHHHHHHHHHH-HccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH--HHhhch
Q 016120 263 SVMPPSRVSVIIGEDYQLKKSILRD-YLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD--LLASLE 338 (394)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~--v~~~~~ 338 (394)
.......... ...+++.+|+||++.. +....+.+...+..+. -.-|..||.++. +...+
T Consensus 91 ---------------ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~-v~lI~att~n~~~~l~~aL- 153 (447)
T 3pvs_A 91 ---------------IREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT-ITFIGATTENPSFELNSAL- 153 (447)
T ss_dssp ---------------HHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-CEEEEEESSCGGGSSCHHH-
T ss_pred ---------------HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-eEEEecCCCCcccccCHHH-
Confidence 1111111111 1246789999999988 4444444444443311 222333666653 22222
Q ss_pred hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
.+...++. ++++ +.++...++.+.+.
T Consensus 154 -~sR~~v~~-----l~~l--~~edi~~il~~~l~ 179 (447)
T 3pvs_A 154 -LSRARVYL-----LKSL--STEDIEQVLTQAME 179 (447)
T ss_dssp -HTTEEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred -hCceeEEe-----eCCc--CHHHHHHHHHHHHH
Confidence 13456888 9999 99999999988753
No 32
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.19 E-value=8.4e-06 Score=77.04 Aligned_cols=156 Identities=18% Similarity=0.158 Sum_probs=88.5
Q ss_pred ccceecccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLIE----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+++ +...+| +.++. ..
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~------~~- 86 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSS------SD- 86 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEH------HH-
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEch------HH-
Confidence 899999999999887731 112345688999999999999999988 333322 22222 11
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc-----------hhHHHHHhhCC---CCCCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS-----------EIWSDLEELLP---DDENG 321 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~-----------~~~~~l~~~l~---~~~~g 321 (394)
+... . .......+...+...-..++.+|+||++.. .. .....+...+. ....+
T Consensus 87 ---l~~~---~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 87 ---LVSK---W------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp ---HHTT---T------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred ---Hhhc---c------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1110 0 011222222222223345778999999975 11 11233332222 23345
Q ss_pred cEEEEecCChHH-HhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120 322 SRVLITVTDPDL-LASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (394)
Q Consensus 322 s~IivTTR~~~v-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~ 374 (394)
..||.||..+.. -..+. ..-...+. +++. +.++-..+|...+...
T Consensus 155 v~vi~atn~~~~ld~al~-~Rf~~~i~-----~~~p--~~~~r~~il~~~~~~~ 200 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIR-RRFERRIY-----IPLP--DLAARTTMFEINVGDT 200 (322)
T ss_dssp EEEEEEESCGGGSCHHHH-HHCCEEEE-----CCCC--CHHHHHHHHHHHHTTC
T ss_pred eEEEEecCChhhCCHHHH-cccCeEEE-----eCCC--CHHHHHHHHHHHhccC
Confidence 566667765422 11110 11245667 8888 9999999998887643
No 33
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.16 E-value=1.8e-05 Score=74.05 Aligned_cols=157 Identities=11% Similarity=0.096 Sum_probs=89.6
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
+++|.+..++++.+.+... -.....+.|+|++|+|||+||+.+++ .....| +.+ +...
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~~-----i~v----~~~~ 84 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISI----KGPE 84 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCEE-----EEE----CHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCCE-----EEE----EhHH
Confidence 7999998888888776431 12345788999999999999999998 333222 222 1223
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C--------------chhHHHHHhhCCC--C
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N--------------SEIWSDLEELLPD--D 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~--------------~~~~~~l~~~l~~--~ 318 (394)
+.... .+.. ...+...+.......+.+|+||++.. . ......+...+.. .
T Consensus 85 l~~~~---~g~~----------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 85 LLTMW---FGES----------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHH---HTTC----------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHhhh---cCch----------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 32222 1211 11222333333345689999999974 0 0012333333221 2
Q ss_pred CCCcEEEEecCChHHH-hhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120 319 ENGSRVLITVTDPDLL-ASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~-~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~ 374 (394)
..+..||.||..++.. ..+-. ..-...+. +++. +.++-.+++...+...
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~-----i~~p--~~~~r~~il~~~l~~~ 202 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIY-----IPLP--DEKSRVAILKANLRKS 202 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEE-----CCCC--CHHHHHHHHHHHHTTS
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEe-----cCCc--CHHHHHHHHHHHHccC
Confidence 2345677777665322 21100 01235677 8888 8888888888776543
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.15 E-value=2.5e-05 Score=74.82 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=35.9
Q ss_pred ccceecccHHH---HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREE---LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~---i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+++|++..++. +.+.+.......+.+.|+|++|+|||++|+.+.+.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 89999988666 45555554433467889999999999999999883
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=3.3e-06 Score=80.42 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=92.5
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccC-eeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD-CLAWVRVSIAYDFGKMLDDIIKSVM 265 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~ 265 (394)
+++|++..++.+..++.... .+.+.++|++|+||||+|+.+.+.......+. ..+.++.+.......+ .+.+....
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHh
Confidence 89999999999999987653 22378999999999999999987311111121 1233343332222222 11111111
Q ss_pred CCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchhcCC
Q 016120 266 PPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEMENG 342 (394)
Q Consensus 266 ~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~~ 342 (394)
.... ... .. .....-.+++-+|++|++.. +......+...+.......++|++|.... +...+. ..
T Consensus 115 ~~~~----~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~--sR 183 (353)
T 1sxj_D 115 RLTV----SKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA--SQ 183 (353)
T ss_dssp HSCC----CCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH--HH
T ss_pred hhcc----cccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh--cc
Confidence 0000 000 00 00011123567999999877 44455556555544445567777765442 222221 12
Q ss_pred CceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 343 EKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
...++ +.++ +.++....+.+.+
T Consensus 184 ~~~i~-----~~~~--~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 184 CSKFR-----FKAL--DASNAIDRLRFIS 205 (353)
T ss_dssp SEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred CceEE-----eCCC--CHHHHHHHHHHHH
Confidence 34777 9999 9999998888765
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.14 E-value=3.2e-05 Score=73.06 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=86.1
Q ss_pred ccceecccHHHHHHHHhc---------C-CCCceEEEEEcCCCccHHHHHHHHhcCccc-ccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIE---------G-PSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.+..++.|.+.+.. . ....+-+.++|++|+|||+||+.+++ +. ... .+.++.+.-.
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~~i~~~~l~---- 83 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EANNST---FFSISSSDLV---- 83 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH--HTTSCE---EEEEECCSSC----
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH--HcCCCc---EEEEEhHHHH----
Confidence 889999888888877632 1 12346788999999999999999998 33 111 1223332211
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCc---------hh----HHHHHhhCC---CCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNS---------EI----WSDLEELLP---DDE 319 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~----~~~l~~~l~---~~~ 319 (394)
... .......+...+...-..++.+|+||++.. . .. ...+...+. ...
T Consensus 84 ----------~~~-----~g~~~~~~~~lf~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 84 ----------SKW-----LGESEKLVKNLFQLARENKPSIIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp ----------CSS-----CCSCHHHHHHHHHHHHHTSSEEEEEETTTG-GGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred ----------hhh-----hhHHHHHHHHHHHHHHhcCCcEEEeecHHH-hccccccccchHHHHHHHHHHHHHhcccccC
Confidence 000 011223333333333346789999999976 1 11 122222221 123
Q ss_pred CCcEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120 320 NGSRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (394)
Q Consensus 320 ~gs~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~ 374 (394)
.+..||.||..+. +-..+- ......+. +++. +.++-..++...+...
T Consensus 148 ~~v~vI~atn~~~~ld~al~-rRf~~~i~-----i~~P--~~~~r~~il~~~l~~~ 195 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIR-RRFEKRIY-----IPLP--EPHARAAMFKLHLGTT 195 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHH-HTCCEEEE-----CCCC--CHHHHHHHHHHHHTTC
T ss_pred CCEEEEEecCCcccCCHHHH-hhcCeEEE-----eCCc--CHHHHHHHHHHHHhcC
Confidence 3445555665442 111110 12245667 8888 8888889998876543
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.13 E-value=1.5e-05 Score=73.32 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=82.0
Q ss_pred ccceecccHHHHHH-------HHhcC-CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHH
Q 016120 187 DINEFERGREELFD-------LLIEG-PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLD 258 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~-------~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 258 (394)
.++|.....++++. .+... ......+.|+|++|+|||+||+.+++. ....| +.++.+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~-------- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK-------- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG--------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH--------
Confidence 56777766666655 33222 345678889999999999999999883 22221 22222210
Q ss_pred HHHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-----------CchhHHHHHhhCCC---CCCCcE
Q 016120 259 DIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-----------NSEIWSDLEELLPD---DENGSR 323 (394)
Q Consensus 259 ~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-----------~~~~~~~l~~~l~~---~~~gs~ 323 (394)
+.+. . .. ....+...+......+..+|+||++.. .......+...+.. ......
T Consensus 101 -----~~g~-~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 -----MIGF-S-----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp -----CTTC-C-----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred -----hcCC-c-----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 0000 0 00 112233333334456789999999753 01222334443332 222344
Q ss_pred EEEecCChHHHhhchhcC-CCceeeCCccCCCCCCCCh-HHHHHHHHH
Q 016120 324 VLITVTDPDLLASLEMEN-GEKIRRDSVLFGGPLIRLK-HEAWQFFIL 369 (394)
Q Consensus 324 IivTTR~~~v~~~~~~~~-~~~~~~~~~~~l~~L~~~~-~~~~~Lf~~ 369 (394)
||.||..+.....+...+ -...++ ++++ +. ++...++.+
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~-----~p~l--~~r~~i~~i~~~ 210 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIH-----VPNI--ATGEQLLEALEL 210 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEE-----CCCE--EEHHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEc-----CCCc--cHHHHHHHHHHh
Confidence 666787775544310011 245677 9999 87 666666655
No 38
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.10 E-value=2e-06 Score=75.36 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=53.7
Q ss_pred ccceec----ccHHHHHHHHhcCCCC--ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHH
Q 016120 187 DINEFE----RGREELFDLLIEGPSG--LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDI 260 (394)
Q Consensus 187 ~~~Gr~----~~~~~i~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 260 (394)
++++.. ..++.+.+++...... ...+.|+|++|+|||+||+.+++ ........++|+++ ..+...+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~~ 97 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFREL 97 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHHH
Confidence 566544 3444555555543221 26788999999999999999998 44333344566654 2444444
Q ss_pred HHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120 261 IKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 303 (394)
....... ........+.+ .-+|||||++.
T Consensus 98 ~~~~~~~---------~~~~~~~~~~~-----~~~lilDei~~ 126 (202)
T 2w58_A 98 KHSLQDQ---------TMNEKLDYIKK-----VPVLMLDDLGA 126 (202)
T ss_dssp HHC---C---------CCHHHHHHHHH-----SSEEEEEEECC
T ss_pred HHHhccc---------hHHHHHHHhcC-----CCEEEEcCCCC
Confidence 4332211 22223333221 23999999965
No 39
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.04 E-value=5.3e-05 Score=71.94 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=86.1
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccc--------------------cccCeeEEEEeCCCCC
Q 016120 193 RGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK--------------------FYFDCLAWVRVSIAYD 252 (394)
Q Consensus 193 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~ 252 (394)
+..+.+.+.+..+ .-...+.++|+.|+|||++|+.+.+...-. .|++. .++.....
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~-- 84 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKG-- 84 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTT--
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEecccc--
Confidence 3455566666543 234568899999999999999887531100 11221 22222100
Q ss_pred HHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE
Q 016120 253 FGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI 326 (394)
Q Consensus 253 ~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv 326 (394)
. .. ..+++.+.+...- .+++-++|+|++.. +....+.+...+-....++.+|+
T Consensus 85 ----------------~-----~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 85 ----------------K-----NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp ----------------C-----SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred ----------------C-----CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 11 2333332222211 24678899999988 55666777777765556677777
Q ss_pred ecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 327 TVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 327 TTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+|.+++ +...+ .+....++ +.++ +.++....+.+..
T Consensus 144 ~t~~~~~l~~ti--~SRc~~~~-----~~~~--~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 144 ATREPERLLATL--RSRCRLHY-----LAPP--PEQYAVTWLSREV 180 (334)
T ss_dssp EESCGGGSCHHH--HTTSEEEE-----CCCC--CHHHHHHHHHHHC
T ss_pred EeCChHhCcHHH--hhcceeee-----CCCC--CHHHHHHHHHHhc
Confidence 776653 33333 23456788 9999 9999888887664
No 40
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=2.7e-05 Score=73.07 Aligned_cols=147 Identities=7% Similarity=-0.028 Sum_probs=90.9
Q ss_pred eecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc-ccc-cccCeeEEEEeCC-CCCHHHHHHHHHHHhCC
Q 016120 190 EFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND-HVK-FYFDCLAWVRVSI-AYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 190 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~-~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~ 266 (394)
|-++.++.+.+.+..+. .+...++|+.|+||||+|+.+.+.. ... .|.+ ..+++.+. ...+.. .+++.+.+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhh
Confidence 34555667777776554 6788899999999999999997621 111 1223 34454332 222221 2223333221
Q ss_pred CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCc
Q 016120 267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEK 344 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~ 344 (394)
.. ..+++-++|+|++.. +....+.|...+-...+.+.+|++|.++ .+...+ .+.
T Consensus 77 ~p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI--~SR-- 132 (305)
T 2gno_A 77 SP--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI--KSR-- 132 (305)
T ss_dssp CC--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH--HTT--
T ss_pred cc--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHH--Hce--
Confidence 11 124577899999988 6666777777775555677777776554 444444 222
Q ss_pred eeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 345 IRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 345 ~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+++ +.++ +.++....+.+.+
T Consensus 133 ~~~-----f~~l--~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 VFR-----VVVN--VPKEFRDLVKEKI 152 (305)
T ss_dssp SEE-----EECC--CCHHHHHHHHHHH
T ss_pred eEe-----CCCC--CHHHHHHHHHHHh
Confidence 888 9999 9999999888776
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.03 E-value=1.7e-05 Score=75.15 Aligned_cols=146 Identities=12% Similarity=-0.003 Sum_probs=86.8
Q ss_pred ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+++|++..++++..++... ......+.|+|++|+|||+||+.+.+ .....| +.++.+...
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~------------ 92 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIE------------ 92 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCC------------
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhcc------------
Confidence 8999999999998888642 23445678999999999999999987 333222 222221111
Q ss_pred hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC------------------CCcEE
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE------------------NGSRV 324 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~------------------~gs~I 324 (394)
........+.. ..+..+|+||++.. .......+...+.... ++..+
T Consensus 93 -------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 93 -------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11111111111 23567899999987 4444444544332211 12455
Q ss_pred EEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 325 LITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 325 ivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
|.||... .+...+. ......++ ++++ +.++...++.+.+.
T Consensus 158 i~atn~~~~l~~~L~-~R~~~~i~-----l~~~--~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 158 IGATTRAGMLSNPLR-DRFGMQFR-----LEFY--KDSELALILQKAAL 198 (338)
T ss_dssp EEEESCGGGSCHHHH-TTCSEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHH-hhcCEEee-----CCCc--CHHHHHHHHHHHHH
Confidence 5555543 2221120 11236788 9999 99999999887643
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.01 E-value=2.6e-05 Score=74.78 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=84.2
Q ss_pred ccceecccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLIE----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..++++.+.+.. .....+.+.|+|++|+|||+||+.+++ ..... .+.++.+.-..
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~i~~~~l~~---- 155 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGAT---FFSISASSLTS---- 155 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC----
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCCe---EEEEehHHhhc----
Confidence 899999999999887742 112355788999999999999999987 33222 23444332111
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------chhHHHHHhhCCC----CCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SEIWSDLEELLPD----DEN 320 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l~~----~~~ 320 (394)
.. .......+...+...-..++.+|+||++.. . ...+..+...+.. ...
T Consensus 156 ----------~~-----~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 ----------KW-----VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp ----------SS-----TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred ----------cc-----cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 000111222222222235678999999853 0 0112333332221 123
Q ss_pred CcEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 321 GSRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 321 gs~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+..||.||..+. +...+- ......+. +... +.++...++...+
T Consensus 221 ~v~vI~atn~~~~l~~~l~-~Rf~~~i~-----i~~p--~~~~r~~il~~~~ 264 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAAR-RRLVKRLY-----IPLP--EASARKQIVINLM 264 (357)
T ss_dssp CEEEEEEESCGGGBCHHHH-TTCCEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHH-hhCceEEE-----eCCc--CHHHHHHHHHHHH
Confidence 445555665432 211110 11234667 8888 8888888887764
No 43
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.01 E-value=4.1e-06 Score=69.41 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=33.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+++|++..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 6789988888888877542112234669999999999999999883
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.00 E-value=3.7e-05 Score=73.65 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=86.2
Q ss_pred ccceecccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLIEG----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..++.|.+.+... ....+-+.++|++|+|||+||+.+++ ....+| +.++. ..+
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~v~~------~~l 120 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSS------SDL 120 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EEEEH------HHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEeeH------HHH
Confidence 8999999999998877311 12234577899999999999999998 333222 22221 111
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cch-----------hHHHHHhhC---CCCCCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSE-----------IWSDLEELL---PDDENG 321 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~-----------~~~~l~~~l---~~~~~g 321 (394)
..... ......+...+...-..++.+|+||++.. ... ....+...+ .....+
T Consensus 121 ----~~~~~---------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 121 ----VSKWM---------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp ----HSCC------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred ----hhhhc---------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 11100 11222222233333345789999999986 110 122222222 222345
Q ss_pred cEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120 322 SRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (394)
Q Consensus 322 s~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~ 374 (394)
..||.||..+. +...+- ......+. +++. +.++-..++...+...
T Consensus 188 v~vI~atn~~~~ld~al~-rRf~~~i~-----i~~P--~~~~r~~il~~~l~~~ 233 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIR-RRFERRIY-----IPLP--DLAARTTMFEINVGDT 233 (355)
T ss_dssp EEEEEEESCGGGSCHHHH-HTCCEEEE-----CCCC--CHHHHHHHHHHHHTTS
T ss_pred eEEEeecCCcccCCHHHH-cccCEEEE-----eCCc--CHHHHHHHHHHHHhhC
Confidence 55666666542 111110 12345667 8888 8888889998876543
No 45
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.98 E-value=7.9e-06 Score=70.20 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 288 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 288 (394)
-..+.|+|++|+||||||+.+++.......+. +++++ ...+...+......... . .....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~-------~--~~~~~---- 97 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD-------T--KFLKT---- 97 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC-------S--HHHHH----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH-------H--HHHHH----
Confidence 46789999999999999999988321112222 23333 34444444443322211 1 12222
Q ss_pred ccCCeEEEEEeCCCC-CchhHH--HHHhhCCCC-CCCcEEEEecCCh
Q 016120 289 LTNKKYFIVLDDVFD-NSEIWS--DLEELLPDD-ENGSRVLITVTDP 331 (394)
Q Consensus 289 l~~kr~LlVlDdv~~-~~~~~~--~l~~~l~~~-~~gs~IivTTR~~ 331 (394)
+. +.-+|||||++. ..+.|. .+...+... .+|..||+||...
T Consensus 98 ~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 21 456899999984 233332 232222211 2466788888753
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.98 E-value=7.1e-05 Score=73.95 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=85.6
Q ss_pred ccceecccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLIE----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+++ ... ..-++.++... +
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~--~~~----~~~~~~v~~~~----l 204 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EAN----NSTFFSISSSD----L 204 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH--HCC----SSEEEEECCC------
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HcC----CCCEEEEeHHH----H
Confidence 899999999988887731 012346788999999999999999998 331 12233333221 1
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-------ch----hHHHHHhhCCC---CCCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-------SE----IWSDLEELLPD---DENG 321 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-------~~----~~~~l~~~l~~---~~~g 321 (394)
.... .+.... ....+.. ..-..++.+|+||++.. . .. ....+...+.. ...+
T Consensus 205 ~~~~---~g~~~~-------~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 205 VSKW---LGESEK-------LVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp ----------CCC-------THHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred Hhhh---cchHHH-------HHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 1110 111110 2222222 22235678999999986 0 01 12233333322 2345
Q ss_pred cEEEEecCChHHH-hhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 322 SRVLITVTDPDLL-ASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 322 s~IivTTR~~~v~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
..||.||..+... ..+- ......+. +++. +.++-..+|...+..
T Consensus 272 v~vI~atn~~~~ld~al~-rRf~~~i~-----i~~P--~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIR-RRFEKRIY-----IPLP--EAHARAAMFRLHLGS 316 (444)
T ss_dssp CEEEEEESCGGGSCHHHH-TTCCEEEE-----CCCC--CHHHHHHHHHHHHTT
T ss_pred EEEEecCCCccccCHHHH-hhcceEEE-----eCCc--CHHHHHHHHHHHHhc
Confidence 5666677654221 1110 12235666 8777 888888888887654
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=1.5e-05 Score=80.40 Aligned_cols=161 Identities=9% Similarity=0.030 Sum_probs=90.5
Q ss_pred ccceecccHHHHHHHHhcCC---------------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCC
Q 016120 187 DINEFERGREELFDLLIEGP---------------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAY 251 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 251 (394)
+++|++..++++.+++.... +..+.+.|+|++|+|||++|+.+++. .. + ..+.++.+...
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~~ 114 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDVR 114 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSCC
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCcc
Confidence 89999999999999997510 13468889999999999999999983 31 2 23344554443
Q ss_pred CHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C---chhHHHHHhhCCCCCCCcEEEEe
Q 016120 252 DFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N---SEIWSDLEELLPDDENGSRVLIT 327 (394)
Q Consensus 252 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~---~~~~~~l~~~l~~~~~gs~IivT 327 (394)
... .....+........ ...-...... .....+++.+|+||++.. . ...+..+...+... +..||++
T Consensus 115 ~~~-~~~~~i~~~~~~~~----~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 115 SKT-LLNAGVKNALDNMS----VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp CHH-HHHHTGGGGTTBCC----STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred hHH-HHHHHHHHHhcccc----HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence 332 22222222211110 0000000000 001235788999999976 1 22234444333222 2345555
Q ss_pred cCChH---HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 328 VTDPD---LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 328 TR~~~---v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+.+.. +.... .....++ ++++ +.++....+.+.+
T Consensus 186 ~~~~~~~~l~~l~---~r~~~i~-----f~~~--~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 186 CNERNLPKMRPFD---RVCLDIQ-----FRRP--DANSIKSRLMTIA 222 (516)
T ss_dssp ESCTTSSTTGGGT---TTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred EcCCCCccchhhH---hceEEEE-----eCCC--CHHHHHHHHHHHH
Confidence 44322 22222 3355778 9999 9999988887764
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.97 E-value=3.1e-05 Score=70.78 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=33.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+++|.+..+.++.+.+..-......+.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 6889998888888777542222345679999999999999999873
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.96 E-value=7.9e-05 Score=72.22 Aligned_cols=153 Identities=11% Similarity=0.052 Sum_probs=82.0
Q ss_pred ccceecccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLIEG----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..++.+.+.+... ....+-+.|+|++|+|||+||+.+++ +.... .+.++.+.-...
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~~~--- 187 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLTSK--- 187 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC------
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhhcc---
Confidence 8999999999998887321 12245778999999999999999987 33222 223332221110
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCc-------------hhHHHHHhhC---CC-CC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNS-------------EIWSDLEELL---PD-DE 319 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~~l~~~l---~~-~~ 319 (394)
. .......+...+...-...+.+|+||++.. . .....+...+ .. ..
T Consensus 188 -------~---------~g~~~~~~~~~~~~a~~~~~~il~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 188 -------Y---------VGEGEKLVRALFAVARELQPSIIFIDQVDS-LLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGG-GC--------CTHHHHHHHHHHHHHHHC----
T ss_pred -------c---------cchHHHHHHHHHHHHHhcCCeEEEEECchh-hcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 000222222222222234668999999964 1 1111222111 11 12
Q ss_pred CCcEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 320 NGSRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 320 ~gs~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
....||.||.... +...+- ......+. +.+. +.++...++...+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~-~R~~~~i~-----i~~p--~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVL-RRFIKRVY-----VSLP--NEETRLLLLKNLLC 296 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHH-TTCCEEEE-----CCCC--CHHHHHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHHHH-cCcceEEE-----cCCc--CHHHHHHHHHHHHH
Confidence 2345555665432 211110 11234567 8888 88998888887754
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=3e-05 Score=73.75 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=86.3
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-ccC-eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-YFD-CLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
+++|.+..++.+...+..+. .+.+.++|++|+||||+|+.+... ... .+. ...-++.+....
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~------------ 89 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRG------------ 89 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCS------------
T ss_pred HhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCccccc------------
Confidence 78898888888888887653 333789999999999999999873 211 111 112222222111
Q ss_pred CCCCCCccccCcCHHHHHHHHHHHc------cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhh
Q 016120 265 MPPSRVSVIIGEDYQLKKSILRDYL------TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLAS 336 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~ 336 (394)
.+.+...+.... .+.+-++|+|++.. +....+.+...+......+++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 112222222211 23467899999976 44555555555443344567777665432 2222
Q ss_pred chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
+ .+....++ +.++ +.++....+.+.+
T Consensus 157 i--~sR~~~~~-----~~~l--~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 157 L--LSQCTRFR-----FQPL--PQEAIERRIANVL 182 (340)
T ss_dssp H--HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred H--HhhceeEe-----ccCC--CHHHHHHHHHHHH
Confidence 2 12334677 8999 9888877776654
No 51
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.92 E-value=3.2e-05 Score=77.28 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=91.0
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
+++|.+..++++.+++... -....-+.|+|++|+|||++|+.+++ +...+| +.++. ..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~------~~ 273 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------PE 273 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEH------HH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEc------hH
Confidence 7899999999988877532 12345678999999999999999987 333222 23331 11
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-------c----hhHHHHHhhCC--CCCCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-------S----EIWSDLEELLP--DDENG 321 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-------~----~~~~~l~~~l~--~~~~g 321 (394)
+...+ .......+...+.....+++.+|+||++.. . . .....|...+. ....+
T Consensus 274 ----l~~~~---------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 ----IMSKL---------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp ----HHTSC---------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred ----hhhhh---------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11111 011233344444444556789999999943 0 1 11223333322 12234
Q ss_pred cEEEEecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 322 SRVLITVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 322 s~IivTTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
..||.||..+. +...+-. ......+. +.+. +.++-.+++..++...+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~-----i~~P--~~~eR~~IL~~~~~~~~ 389 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVD-----IGIP--DATGRLEILQIHTKNMK 389 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEE-----CCCC--CHHHHHHHHHHHTTTSC
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEE-----eCCC--CHHHHHHHHHHHHhcCC
Confidence 45665666553 2222210 01234677 8888 99999999988865443
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.87 E-value=4.2e-05 Score=71.39 Aligned_cols=117 Identities=10% Similarity=0.146 Sum_probs=64.5
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..++.+...+... ......+.++|++|+|||++|+.+++ .....-...+.++.+.-.... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHHH
Confidence 5789888888888777542 12245789999999999999999987 332211223445544322211 1112
Q ss_pred HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhC
Q 016120 260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELL 315 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l 315 (394)
+ ++.... .... ....+...+. .....+|+||++.. +...+..+...+
T Consensus 95 l---~g~~~~---~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 95 L---IGAPPG---YVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp H---HCCCTT---STTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred h---cCCCCc---cccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 2 222111 0011 1112222221 23447999999987 555566665544
No 53
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00014 Score=71.28 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=88.6
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.++.+++|.+.+.-. -...+-+.++|++|+|||.||+.+++ +...+| +.++.+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s--- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD--- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC---
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc---
Confidence 7889998888887766421 13456777999999999999999998 444333 2333322111
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C----c----h----hHHHHHhhCC--CC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N----S----E----IWSDLEELLP--DD 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~----~----~----~~~~l~~~l~--~~ 318 (394)
.. ...+...+.......-...+++|.+|++.. . . . ....+...+. ..
T Consensus 254 -----------k~-----~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 -----------KY-----IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp -----------SS-----SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred -----------cc-----chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 00 011222223333333345789999999974 0 0 0 1222332221 22
Q ss_pred CCCcEEEEecCChHHHhhchhcC--CCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 319 ENGSRVLITVTDPDLLASLEMEN--GEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~~--~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
..+..||.||-.++.....-..+ -...+. ++.- +.++-.++|+.++...+
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~-----i~lP--d~~~R~~Il~~~~~~~~ 369 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVE-----IPLP--NEAGRLEIFKIHTAKVK 369 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEEC-----CCCC--CHHHHHHHHHHHHHTSC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeee-----cCCc--CHHHHHHHHHHHhcCCC
Confidence 33456777777664332220011 244566 8777 77777788877755433
No 54
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.84 E-value=0.00013 Score=67.57 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=36.7
Q ss_pred ccceecccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG----------PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..++.+.+.+... ......+.|+|++|+|||++|+.+++
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 8999999999988877431 12345778999999999999999988
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=0.00013 Score=66.27 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=82.2
Q ss_pred ccceecccHHHHHHHH---hcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLL---IEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..++++.+.+ ... ....+-+.|+|++|+||||||+.+++ .....| +.++.+.-..
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~i~~~~~~~---- 83 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSDFVE---- 83 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCCE---EEECSCSSTT----
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCCE---EEEeHHHHHH----
Confidence 8999887777665543 221 01233478999999999999999987 332222 3332221100
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C--c------------hhHHHHHhhCC--CCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N--S------------EIWSDLEELLP--DDE 319 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~--~------------~~~~~l~~~l~--~~~ 319 (394)
.. .......+...+.......+.++++|++.. . . .....+...+. ...
T Consensus 84 ------~~---------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ------MF---------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ------SC---------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ------Hh---------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00 011233333444444455678999999843 0 0 11222322221 123
Q ss_pred CCcEEEEecCChH-HHhhchhc-CCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 320 NGSRVLITVTDPD-LLASLEME-NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 320 ~gs~IivTTR~~~-v~~~~~~~-~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
.+..||.||..++ +....-.. .-...+. +++. +.++-.+++...+..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~-----i~~P--~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVV-----VGLP--DVRGREQILKVHMRR 197 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEE-----CCCC--CHHHHHHHHHHHHTT
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEE-----eCCC--CHHHHHHHHHHHHhc
Confidence 3455666776553 21222000 1234566 8777 878877888776543
No 56
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.83 E-value=9e-05 Score=69.81 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=77.1
Q ss_pred ccc-eecc--cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 187 DIN-EFER--GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 187 ~~~-Gr~~--~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
+|+ |... ....+...+.........+.|+|++|+||||||+.+++. ....-...++++. ..+...+...
T Consensus 12 ~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~ 83 (324)
T 1l8q_A 12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEH 83 (324)
T ss_dssp SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHH
Confidence 555 5332 233444444443323456789999999999999999983 3221112345543 2333344333
Q ss_pred hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc--hhHHHHHhhCCC-CCCCcEEEEecCCh--------
Q 016120 264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS--EIWSDLEELLPD-DENGSRVLITVTDP-------- 331 (394)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~--~~~~~l~~~l~~-~~~gs~IivTTR~~-------- 331 (394)
+... ..... ...+. +.-+|+|||+.. .. ...+.+...+.. ...|..||+||.++
T Consensus 84 ~~~~---------~~~~~----~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 84 LKKG---------TINEF----RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHT---------CHHHH----HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHcC---------cHHHH----HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 3211 11111 12222 367999999977 22 222333333221 12456788877643
Q ss_pred -HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120 332 -DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 332 -~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
.+...+ ....+++ ++| +.++...++.+.+
T Consensus 150 ~~L~sR~---~~~~~i~-----l~~---~~~e~~~il~~~~ 179 (324)
T 1l8q_A 150 DRLVSRF---EGGILVE-----IEL---DNKTRFKIIKEKL 179 (324)
T ss_dssp HHHHHHH---HTSEEEE-----CCC---CHHHHHHHHHHHH
T ss_pred hHhhhcc---cCceEEE-----eCC---CHHHHHHHHHHHH
Confidence 122222 1224566 665 4566677776664
No 57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00012 Score=70.71 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=89.9
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.++.+++|.+.+.-. -...+-+.++|++|+|||.||+.+++ +...+| +.++.+.-.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s--- 220 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ--- 220 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC---
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc---
Confidence 8899998888887766421 12345677999999999999999998 444443 3333322110
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C------ch------hHHHHHhhCC--CC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N------SE------IWSDLEELLP--DD 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~------~~------~~~~l~~~l~--~~ 318 (394)
.. .+.+...+.......-...+++|.+|++.. . .. ....+...+. ..
T Consensus 221 -----------k~-----vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 -----------KY-----IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp -----------SS-----TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred -----------cc-----cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 00 011223333333333346789999999975 0 00 1122222221 12
Q ss_pred CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCC
Q 016120 319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLE 377 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~ 377 (394)
..+-.||.||..++.....=.. .-+..+. ++.- +.++-.++|+.+....+..
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~-----i~lP--d~~~R~~Il~~~~~~~~l~ 338 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIE-----FPPP--SVAARAEILRIHSRKMNLT 338 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEE-----CCCC--CHHHHHHHHHHHHTTSBCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEE-----cCCc--CHHHHHHHHHHHhcCCCCC
Confidence 3344566677655322111001 2356777 8877 8888888888776654433
No 58
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.74 E-value=3.9e-05 Score=70.17 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=34.2
Q ss_pred ccceecccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIE----------GPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..++.+.+.+.. .....+-+.|+|++|+|||+||+.+++
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 899999888888776541 011123366999999999999999988
No 59
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00025 Score=69.54 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=90.4
Q ss_pred ccceecccHHHHHHHHhc-----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIE-----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.++.+++|.+.+.- +-...+-|.++|++|+|||.||+.+++ +...+| +.+..+.-
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L----- 279 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSEL----- 279 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG-----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHh-----
Confidence 789999888888776532 113456677999999999999999998 444433 33332221
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C----ch--------hHHHHHhhCC--CC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N----SE--------IWSDLEELLP--DD 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~----~~--------~~~~l~~~l~--~~ 318 (394)
.... .+.+...+.......-...+++|++|++.. . .. ....+...+. ..
T Consensus 280 ---------~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 280 ---------VQKY-----VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ---------CCCS-----SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ---------hccc-----CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 1110 111223333333333346789999999975 0 00 1112222221 12
Q ss_pred CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCCCC
Q 016120 319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENY 379 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~~~ 379 (394)
..+-.||.||-.++.....-.. .-...+. ++.. +.++-.++|+.++...+....
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~-----i~lP--d~~~R~~Ilk~~l~~~~l~~d 401 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVE-----FSLP--DLEGRANIFRIHSKSMSVERG 401 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEEC-----CCCC--CHHHHHHHHHHHHTTSCBCSS
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEE-----eCCc--CHHHHHHHHHHHhcCCCCCCC
Confidence 2344456576554322111001 2356677 8888 888888889877765544433
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.72 E-value=8.6e-05 Score=79.41 Aligned_cols=43 Identities=9% Similarity=0.157 Sum_probs=37.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++||+.++.++++.|.... ...+.++|.+|+|||++|+.+++
T Consensus 171 ~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999997643 33457899999999999999987
No 61
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.67 E-value=0.00023 Score=66.62 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=36.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+++|+...+.++.+.+..-......+.|+|.+|+|||++|+.+++.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 4788888888888887553223345679999999999999999873
No 62
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.66 E-value=0.00034 Score=69.45 Aligned_cols=157 Identities=14% Similarity=0.165 Sum_probs=86.1
Q ss_pred ccceecccHHHHHHHHh---cC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLI---EG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..++++.+.+. .. -...+-+.|+|++|+|||+||+.+++ +....| +.++.+.-...
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~--- 88 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL--- 88 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC---
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH---
Confidence 89999887777766543 21 01123477999999999999999998 333222 23333221110
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc--------------hhHHHHHhhCC--CCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS--------------EIWSDLEELLP--DDE 319 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~--------------~~~~~l~~~l~--~~~ 319 (394)
. ...........+.....+.+.+|+||++.. .. .....+...+. ...
T Consensus 89 -------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 -------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp -------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred -------H---------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 000222333444444456789999999954 00 12233332221 123
Q ss_pred CCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120 320 NGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM 374 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~ 374 (394)
.+..||.||..++.....-.. .-...+. +++. +.++-.+++..+....
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~-----i~~P--d~~~R~~Il~~~~~~~ 202 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIV-----VDPP--DMLGRKKILEIHTRNK 202 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEE-----CCCC--CHHHHHHHHHHHHTTS
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEee-----cCCC--CHHHHHHHHHHHHHhC
Confidence 355677777766543211001 1233666 8878 8777778887765443
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.63 E-value=9.9e-05 Score=73.41 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=37.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++||+.++..+.+.|.... ..-+.++|++|+|||++|+.+++
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 79999999999999997642 33456899999999999999987
No 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.63 E-value=0.00015 Score=67.31 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=35.9
Q ss_pred ccceecccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG------------PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|.+..++.+...+... ......+.++|++|+|||++|+.+.+
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999988877541 12234567999999999999999987
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00019 Score=70.28 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=85.2
Q ss_pred ccceecccHHHHHHHHhc----C-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIE----G-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.++.+++|.+.+.. . -+..+-+.++|++|+|||.||+.+++ +...+| +.++.+.-
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l----- 251 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQL----- 251 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG-----
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhh-----
Confidence 899999988888776532 1 13456778999999999999999998 444333 23332221
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC------Cch-----h----HHHHHhhCCC--C
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD------NSE-----I----WSDLEELLPD--D 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~------~~~-----~----~~~l~~~l~~--~ 318 (394)
.... .+.+...+.......-...+++|.+|++.. +.. . ...+...+.. .
T Consensus 252 ---------~~~~-----vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 252 ---------VQMY-----IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp ---------CSSC-----SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred ---------hhcc-----cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 1110 011222222222222234689999999863 000 1 1223333322 1
Q ss_pred CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
..+-.||.||..++.....-.. .-...+. ++.. +.++-.++|+.++..
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~-----i~lP--d~~~R~~Il~~~~~~ 367 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIE-----FPLP--SEDSRAQILQIHSRK 367 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEE-----CCCC--CHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEE-----eCCc--CHHHHHHHHHHHhcC
Confidence 2344566577665433221001 1244566 8777 777777888766543
No 66
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.56 E-value=6.3e-05 Score=62.74 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-..+.|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999883
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00054 Score=66.62 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=87.5
Q ss_pred ccceecccHHHHHHHHhc----C-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIE----G-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.++.+++|.+.+.- . -+..+-|.++|++|+|||.||+.+++ +...+| +.++.+.-
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l----- 252 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSEL----- 252 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGG-----
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHh-----
Confidence 889999888888776642 1 13456678999999999999999998 444333 22332211
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C--------ch----hHHHHHhhCC--CC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N--------SE----IWSDLEELLP--DD 318 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~--------~~----~~~~l~~~l~--~~ 318 (394)
.... ...+...+.......-...+++|.+|++.. . .. ....+...+. ..
T Consensus 253 ---------~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 253 ---------IQKY-----LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ---------CCSS-----SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred ---------hhcc-----CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 1110 011222222222223345789999999874 0 00 1122222211 22
Q ss_pred CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCC
Q 016120 319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLE 377 (394)
Q Consensus 319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~ 377 (394)
..+-.||.||-.++.....-.. .-+..+. ++.- +.++-.++|+.++...+..
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~-----v~lP--d~~~R~~Il~~~l~~~~l~ 372 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKIL-----FENP--DLSTKKKILGIHTSKMNLS 372 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEEC-----CCCC--CHHHHHHHHHHHHTTSCBC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEE-----cCCc--CHHHHHHHHHHHhcCCCCC
Confidence 3344566677665433322001 1133455 7777 7777778887776654433
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00029 Score=74.32 Aligned_cols=152 Identities=11% Similarity=0.079 Sum_probs=84.2
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..++.+.+.+... ......+.++|++|+|||++|+.+++. ....-...+.++.+.-...
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~------ 563 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK------ 563 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS------
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc------
Confidence 6899999888888877632 122347889999999999999999873 2221122344444331110
Q ss_pred HHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEEe
Q 016120 260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVLIT 327 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~IivT 327 (394)
.. . ....+...++ .....+|+||++.. ....+..|...+..+ ....+||+|
T Consensus 564 --------~~-----~-~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 564 --------HS-----T-SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp --------CC-----C-C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred --------cc-----c-ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 00 0 1011111111 12345899999987 555556555444321 234678888
Q ss_pred cCC-----hHH----Hhhch---hcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 328 VTD-----PDL----LASLE---MENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 328 TR~-----~~v----~~~~~---~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
|.. ..+ ..... ...-..++. +.|| +.++...++...
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~-----~~~l--~~~~~~~i~~~~ 674 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIV-----FHSL--EKKHLTEIVSLM 674 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEE-----CC----CHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEe-----cCCC--CHHHHHHHHHHH
Confidence 873 111 11110 011235777 9999 999888777654
No 69
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0003 Score=68.81 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=57.4
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.+..+++|.+.+... -...+-+.++|++|+|||+||+.+++ +...+| +.++.+.-.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~--- 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH--- 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC---
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc---
Confidence 8899999888887766421 13455678999999999999999998 444333 3333332111
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVF 302 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 302 (394)
.. .+.+...+...+...-...++++.+|++.
T Consensus 245 -----------~~-----~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 245 -----------KY-----LGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp -----------SS-----CSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred -----------cc-----cchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 00 11123333333333334678999999985
No 70
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.53 E-value=0.00029 Score=61.97 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------ccccCc--CHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------SVIIGE--DYQL 280 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~--~~~~ 280 (394)
-.++.|+|.+|+|||||+..+.. ..-..++|++....++...+.. +....+..... ...... +...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45889999999999999999987 1224677888776566655443 33333221000 000111 2234
Q ss_pred HHHHHHHHccCCeEEEEEeCCCC
Q 016120 281 KKSILRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 281 ~~~~l~~~l~~kr~LlVlDdv~~ 303 (394)
....+...+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 45555555544577999999876
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.43 E-value=0.0013 Score=69.42 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=84.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccc-ccCeeEEE-EeCCCCCHHHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKF-YFDCLAWV-RVSIAYDFGKMLDDII 261 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~-~F~~~~wv-~vs~~~~~~~i~~~i~ 261 (394)
.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+.+.. .+.. ...+.+|. +.+.-
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 78999999999999987642 3455789999999999999998721 1111 12333332 11110
Q ss_pred HHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCCCc--------hhHH--HHHhhCCCCCCCcEEEEecCC
Q 016120 262 KSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFDNS--------EIWS--DLEELLPDDENGSRVLITVTD 330 (394)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~~--~l~~~l~~~~~gs~IivTTR~ 330 (394)
+.+.. .....+.....+.+.+ ..++.+|++|++.. . ...+ .+...+.. ..+..+|.+|..
T Consensus 254 --~~~~~-----~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~-l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 --LAGTK-----YRGDFEKRFKALLKQLEQDTNSILFIDEIHT-IIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp ---CCCC-----CSSCHHHHHHHHHHHHSSSSCEEEEETTTTT-TTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred --hcccc-----ccchHHHHHHHHHHHHHhcCCeEEEEechHH-HhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 00010 1113333333333333 44678999999985 2 1111 22222222 223456666654
Q ss_pred hHHHhhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120 331 PDLLASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH 370 (394)
Q Consensus 331 ~~v~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~ 370 (394)
+........ ...-..+. +++. +.++..+++...
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~-----v~~p--~~~e~~~il~~l 361 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKID-----ITEP--SIEETVQIINGL 361 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEE-----CCCC--CHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEE-----cCCC--CHHHHHHHHHHH
Confidence 443211100 01123566 9999 999888888654
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.41 E-value=0.0012 Score=69.57 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=88.9
Q ss_pred ccceecccHHHHHHHHhc----CC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIE----GP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.++.+++|.+.+.- .+ ...+-|.++|++|+|||+||+.+++ +...+| +.|+.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~------- 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------- 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH-------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH-------
Confidence 789999988888877632 11 2356778999999999999999998 444433 333321
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-------chh----HHHHH---hhCCCCCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-------SEI----WSDLE---ELLPDDEN 320 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-------~~~----~~~l~---~~l~~~~~ 320 (394)
++.. .. .......+...+.......+++|+||++.. - .+. ...+. ..+.. ..
T Consensus 273 ---~l~s---k~------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~-~~ 339 (806)
T 3cf2_A 273 ---EIMS---KL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp ---HHHS---SC------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-GG
T ss_pred ---Hhhc---cc------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc-cC
Confidence 1111 10 011344444444445566789999999975 0 111 12222 22211 22
Q ss_pred CcEEEEecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 321 GSRVLITVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 321 gs~IivTTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
+--||-||..++ +-..+-. ..-...++ ++.. +.++-.++|+.+....+
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~-----i~~P--d~~~R~~IL~~~l~~~~ 389 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVD-----IGIP--DATGRLEILQIHTKNMK 389 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEE-----CCCC--CHHHHHHHHHHTCSSSE
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEe-----cCCC--CHHHHHHHHHHHhcCCC
Confidence 334455665543 2222200 01245667 8877 88888888887665443
No 73
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.0048 Score=56.60 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=81.2
Q ss_pred ccceecccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHH
Q 016120 187 DINEFERGREELFDLLIEG------------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFG 254 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (394)
++.|.++.+++|.+.+... ..... +.++|++|+||||||+.++.. ... ..+++..+.-.+
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~-- 82 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLN-- 82 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCS--
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHh--
Confidence 7888888887777654311 11223 889999999999999999873 222 234443222110
Q ss_pred HHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-C-c----------hhHHHHHhhCCCC--C
Q 016120 255 KMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-N-S----------EIWSDLEELLPDD--E 319 (394)
Q Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~-~----------~~~~~l~~~l~~~--~ 319 (394)
.. ..........+.+. -...++++++|++.. . . .....+...+..+ .
T Consensus 83 ------------~~------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 83 ------------MY------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp ------------ST------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred ------------hh------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 00 00111111122222 134578999999975 0 0 1112233333222 2
Q ss_pred CCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120 320 NGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG 372 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~ 372 (394)
...-++.+|..+++....-.. .-...+. ++.. +.++-.++|+....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~-----~~~P--~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLF-----VGLP--PPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEE-----CCSC--CHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEE-----eCCc--CHHHHHHHHHHHHh
Confidence 234455577766543322111 2355667 8888 88888888887653
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.36 E-value=0.00093 Score=70.84 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=85.7
Q ss_pred ccceecccHHHHHHHHhc-----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIE-----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
+++|.+..++++.+++.. .-.....+.|+|++|+||||||+.+.+ .....| +.++.+
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~---i~v~~~------- 272 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------- 272 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE---EEEEHH-------
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE---EEEEch-------
Confidence 899999999999888753 112345688999999999999999988 333333 333321
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C-----ch----hHHHHHhhCCC--CCCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N-----SE----IWSDLEELLPD--DENG 321 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~-----~~----~~~~l~~~l~~--~~~g 321 (394)
.+..... ......+...+.......+.++++|++.. + .+ ....+...+.. ...+
T Consensus 273 -------~l~~~~~-----g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 273 -------EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -------HHSSSST-----THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred -------Hhhhhhh-----hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 1111100 11222233333333345678999999953 0 10 11222222211 1223
Q ss_pred cEEEEecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120 322 SRVLITVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP 375 (394)
Q Consensus 322 s~IivTTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~ 375 (394)
..+|.||..++ +-..+.. ..-...+. +... +.++-.+++...+....
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~-----i~~p--~~~~r~~il~~~~~~~~ 389 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVD-----IGIP--DATGRLEILQIHTKNMK 389 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEEC-----CCCC--CHHHHHHHHHHTTTTSC
T ss_pred EEEecccCCchhcCHHHhcccccccccc-----cCCC--CHHHHHHHHHHHHhcCC
Confidence 45555665542 2222200 01224456 7778 88888888887655433
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.36 E-value=0.00035 Score=73.73 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=37.1
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++||+..++++...|.... ..-+.++|++|+|||++|+.+.+
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 79999999999999997643 33467999999999999999987
No 76
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.35 E-value=0.00048 Score=64.93 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=83.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 266 (394)
.++|++..++.+...+..+ .-+.++|++|+|||+||+.+.+ .....| ..+..+.......+..... ...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g~~~--~~~ 96 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIGTMI--YNQ 96 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHEEEE--EET
T ss_pred ceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCCcee--ecC
Confidence 6889999998888888764 2467899999999999999987 333222 2233333333332211100 000
Q ss_pred CCCCccccCcCHHHHHHHHHHHccC--CeEEEEEeCCCC-CchhHHHHHhhCCC-----------CCCCcEEEEecCChH
Q 016120 267 PSRVSVIIGEDYQLKKSILRDYLTN--KKYFIVLDDVFD-NSEIWSDLEELLPD-----------DENGSRVLITVTDPD 332 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~-~~~~~~~l~~~l~~-----------~~~gs~IivTTR~~~ 332 (394)
... .. ..-.+ ...++++|++.. +......+...+.. ......|+.|+....
T Consensus 97 ~~~-------~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 97 HKG-------NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp TTT-------EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred CCC-------ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 000 00 00001 125899999987 45444444443321 122344555554221
Q ss_pred ------HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 333 ------LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 333 ------v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
+...+- ..-...+. +++. +.++-.+++.+..+.
T Consensus 162 ~~~~~~l~~~l~-~Rf~~~i~-----i~~p--~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 162 QEGTYPLPEAQV-DRFMMKIH-----LTYL--DKESELEVMRRVSNM 200 (331)
T ss_dssp CSCCCCCCHHHH-TTSSEEEE-----CCCC--CHHHHHHHHHHHHCT
T ss_pred ccCcccCCHHHH-hheeEEEE-----cCCC--CHHHHHHHHHhcccc
Confidence 111110 11123477 9999 999999999887654
No 77
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.28 E-value=6.6e-05 Score=70.49 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=33.0
Q ss_pred cHHHHHHHHhcCCC-CceEEEEEcCCCccHHHHHHHHhcCcccc-cccCeeEEEEe
Q 016120 194 GREELFDLLIEGPS-GLAVVAILDSSGFDKTVFTADTYNNDHVK-FYFDCLAWVRV 247 (394)
Q Consensus 194 ~~~~i~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v 247 (394)
..+.+.+++..... ....+.|+|++|+|||+||+.+++ ... ..-..++++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 44455556654322 245778999999999999999998 333 22233455544
No 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.27 E-value=0.0052 Score=55.33 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=31.3
Q ss_pred ccceecccHHHHHHHHhc--C---------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIE--G---------PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~--~---------~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..+.++.+.... . ..... +.|+|++|+||||||+.+++
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence 788887766665544321 1 11123 88999999999999999998
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.23 E-value=0.00098 Score=71.23 Aligned_cols=132 Identities=11% Similarity=0.173 Sum_probs=69.8
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 259 (394)
.++|.+..+..+...+... +.....+.|+|+.|+|||++|+.+.+. ....-...+.++.+.-... .....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~-~~~s~ 635 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HAVSR 635 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSS-GGGGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccch-hHHHH
Confidence 5799998888887777532 123457889999999999999999873 2111112234444432211 00000
Q ss_pred HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEE
Q 016120 260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE-----------NGSRVLI 326 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~Iiv 326 (394)
+ ++.+.. .... ....+...+.. ...-+|+||++.. +...++.|...+..+. .++.||+
T Consensus 636 l---~g~~~~---~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ 706 (854)
T 1qvr_A 636 L---IGAPPG---YVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706 (854)
T ss_dssp C--------------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred H---cCCCCC---CcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE
Confidence 0 010000 0000 11122222222 2346899999987 5666677766665331 2445777
Q ss_pred ecCC
Q 016120 327 TVTD 330 (394)
Q Consensus 327 TTR~ 330 (394)
||..
T Consensus 707 tsn~ 710 (854)
T 1qvr_A 707 TSNL 710 (854)
T ss_dssp ECCT
T ss_pred ecCc
Confidence 7764
No 80
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.21 E-value=0.0015 Score=64.51 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=34.2
Q ss_pred ccceecccHHHHH---HHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELF---DLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~---~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.++.++.+. +.+..+....+-+.++|++|+|||+||+.+.+
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 8999998877544 44444433345678999999999999999987
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.20 E-value=0.0011 Score=69.76 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=35.7
Q ss_pred ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|.+..++.+...+... +.....+.++|++|+|||++|+.+.+
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 5889988888887776531 12345788999999999999999987
No 82
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.19 E-value=0.00055 Score=69.31 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=34.1
Q ss_pred ccceecccHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIE----GPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+.....+.+.+.- .......+.++|++|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 688888777777554432 122355889999999999999999987
No 83
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.12 E-value=0.0013 Score=61.10 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
....+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356778899999999999999998
No 84
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.09 E-value=0.00048 Score=64.55 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=45.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe--CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV--SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 286 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 286 (394)
-+++.|+|++|+|||+||.++... .-..+.|++. .+..+. . ..+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~-------~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y-------NTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C-------BCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h-------hcCHHHHHHHHH
Confidence 346789999999999999999873 1123456666 322110 0 014566666666
Q ss_pred HHccCCeEEEEEeCCCC
Q 016120 287 DYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 287 ~~l~~kr~LlVlDdv~~ 303 (394)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 6665555 999999986
No 85
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.07 E-value=0.0019 Score=61.98 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=34.0
Q ss_pred ccceecccHHHHHHHHhc----------------------------CCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIE----------------------------GPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|.+..++.+...+.. .......+.++|++|+|||++|+.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 578888888888776620 011234577999999999999999987
No 86
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.06 E-value=0.0025 Score=58.40 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=32.0
Q ss_pred ccceecccHHHHHHHHhc--C---------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIE--G---------PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~--~---------~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..+.++.+.... . ..... +.|+|++|+||||||+.+++
T Consensus 41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHH
Confidence 889988776666554321 1 11123 88999999999999999998
No 87
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.04 E-value=0.0032 Score=62.85 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=81.8
Q ss_pred ccceecccHHHHHHHHh---cCC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120 187 DINEFERGREELFDLLI---EGP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM 256 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 256 (394)
+++|.+..+.++.+... ... .-.+-+.|+|++|+|||+||+.+++ ..... .+.++.+.-.
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~--~~~~~---~i~i~g~~~~----- 101 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVP---FITASGSDFV----- 101 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCC---EEEEEGGGGT-----
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEehhHHH-----
Confidence 89998887776665542 210 1122388999999999999999998 33322 2333322100
Q ss_pred HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccC----CeEEEEEeCCCC-C----------ch----hHHHHHhhCCC
Q 016120 257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN----KKYFIVLDDVFD-N----------SE----IWSDLEELLPD 317 (394)
Q Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~-~----------~~----~~~~l~~~l~~ 317 (394)
.. ........+...++. .+.++++|++.. . .. ....+...+..
T Consensus 102 ---------~~---------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 102 ---------EM---------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp ---------SS---------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred ---------Hh---------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 00 011122333444432 358999999954 0 11 12334333332
Q ss_pred C--CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120 318 D--ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS 373 (394)
Q Consensus 318 ~--~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~ 373 (394)
. ..+..|+.||..+++....-.. .-...+. +++. +.++-.+++..++..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~-----i~~P--d~~~R~~IL~~~~~~ 216 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA-----IDAP--DVKGREQILRIHARG 216 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEE-----CCCC--CHHHHHHHHHHTTSS
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEe-----cCCC--CHHHHHHHHHHHHhc
Confidence 2 2334556677766553211001 1234666 8888 888888888766543
No 88
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.01 E-value=0.0049 Score=56.01 Aligned_cols=129 Identities=10% Similarity=0.075 Sum_probs=66.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcc-----c-------cc---cc-CeeEEEEeCC----CCCHH--------------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDH-----V-------KF---YF-DCLAWVRVSI----AYDFG-------------- 254 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~-----~-------~~---~F-~~~~wv~vs~----~~~~~-------------- 254 (394)
-.+++|+|+.|+|||||.+.++.-.. + .. .+ ..+.++.-.. ..++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 120 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS 120 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCCh
Confidence 35899999999999999999975211 0 00 00 1123331111 11111
Q ss_pred ----HHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEE
Q 016120 255 ----KMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVL 325 (394)
Q Consensus 255 ----~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~Ii 325 (394)
.-..++++.++........... +..+. .-.+...|-.++=+|+||.--. +...-..+...+..- ..|..||
T Consensus 121 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii 200 (256)
T 1vpl_A 121 SEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200 (256)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEE
Confidence 1123445555543221112223 22222 2334445566777899999876 443333333333211 2366799
Q ss_pred EecCChHHHhhc
Q 016120 326 ITVTDPDLLASL 337 (394)
Q Consensus 326 vTTR~~~v~~~~ 337 (394)
++|.+.+.+...
T Consensus 201 ivtHd~~~~~~~ 212 (256)
T 1vpl_A 201 VSSHNMLEVEFL 212 (256)
T ss_dssp EEECCHHHHTTT
T ss_pred EEcCCHHHHHHH
Confidence 999988776654
No 89
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.99 E-value=0.0019 Score=61.52 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILR 286 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~ 286 (394)
.-.++.|.|++|+||||||..+... ....=..++|++....++.. .+..++.......-... +.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3468999999999999999998873 22222346788877776654 45555543221101122 5666666666
Q ss_pred HHcc-CCeEEEEEeCCCC
Q 016120 287 DYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 287 ~~l~-~kr~LlVlDdv~~ 303 (394)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 6554 4566899999866
No 90
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.98 E-value=0.0043 Score=56.61 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=65.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCc-cccc-cc-----------CeeE-EEEeCCCC----CH--------------HHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNND-HVKF-YF-----------DCLA-WVRVSIAY----DF--------------GKML 257 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~-~~~~-~F-----------~~~~-wv~vs~~~----~~--------------~~i~ 257 (394)
.+++|+|+.|+|||||.+.++.-. .-.. .+ .... ++ .+.+ ++ ..-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v--~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNL--PEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECC--GGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEe--CCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 488999999999999999997521 0000 00 0122 22 2221 11 1223
Q ss_pred HHHHHHhCCC-CCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChH
Q 016120 258 DDIIKSVMPP-SRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPD 332 (394)
Q Consensus 258 ~~i~~~l~~~-~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 332 (394)
.++++.++.. ......... +..+. .-.+...|..++=+++||.--. +...-..+...+..... .||++|.+.+
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 4566666554 221122233 22222 2334445556677899999876 44433444443332222 6888888866
Q ss_pred HHhhc
Q 016120 333 LLASL 337 (394)
Q Consensus 333 v~~~~ 337 (394)
.+...
T Consensus 187 ~~~~~ 191 (263)
T 2pjz_A 187 MLNLY 191 (263)
T ss_dssp GGGGC
T ss_pred HHHHh
Confidence 55444
No 91
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.94 E-value=0.0065 Score=55.49 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=67.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccc-c----------cc------CeeEEEEeCC----CC----------------C
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVK-F----------YF------DCLAWVRVSI----AY----------------D 252 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~----------~F------~~~~wv~vs~----~~----------------~ 252 (394)
.+++|+|+.|+|||||++.+..-..-. . .. ..+.++.-.. .. .
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ 117 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence 588999999999999999997521100 0 00 0122221111 01 1
Q ss_pred HHHHHHHHHHHhCCCCCCccccCc---CHHHHHHHHHHHccC------CeEEEEEeCCCC--CchhHHHHHhhCCC--CC
Q 016120 253 FGKMLDDIIKSVMPPSRVSVIIGE---DYQLKKSILRDYLTN------KKYFIVLDDVFD--NSEIWSDLEELLPD--DE 319 (394)
Q Consensus 253 ~~~i~~~i~~~l~~~~~~~~~~~~---~~~~~~~~l~~~l~~------kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~ 319 (394)
...-..++++.++........... ...+.... ...|-. ++=+|+||.--. +...-..+...+.. ..
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~i-AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQL-ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp HHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHH-HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHH-HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 233445666666654332222333 23333333 333443 778899999876 34333334333322 12
Q ss_pred CCcEEEEecCChHHHhhc
Q 016120 320 NGSRVLITVTDPDLLASL 337 (394)
Q Consensus 320 ~gs~IivTTR~~~v~~~~ 337 (394)
.|..||++|.+.+.+...
T Consensus 197 ~~~tvi~vtHdl~~~~~~ 214 (266)
T 4g1u_C 197 EPLAVCCVLHDLNLAALY 214 (266)
T ss_dssp SSEEEEEECSCHHHHHHH
T ss_pred CCCEEEEEEcCHHHHHHh
Confidence 345688888887766544
No 92
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.92 E-value=0.0025 Score=56.19 Aligned_cols=117 Identities=11% Similarity=-0.000 Sum_probs=61.7
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcc-----------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSV----------------- 272 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~----------------- 272 (394)
.++.|+|.+|+|||||++.+... ....=..+.|+.... ....+...+. .++.......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 58899999999999999998852 211112355655433 3444443332 3332211000
Q ss_pred -ccCc-CHHHHHHHHHHHcc-CC--eEEEEEeCCCC----CchhHHHHHhhCCC--CCCCcEEEEecCCh
Q 016120 273 -IIGE-DYQLKKSILRDYLT-NK--KYFIVLDDVFD----NSEIWSDLEELLPD--DENGSRVLITVTDP 331 (394)
Q Consensus 273 -~~~~-~~~~~~~~l~~~l~-~k--r~LlVlDdv~~----~~~~~~~l~~~l~~--~~~gs~IivTTR~~ 331 (394)
.... +..++...+...+. .+ ..+||+|.... +......+...+.. ...|..||+||...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0012 44555555555542 23 34999999873 23333333333221 13467889888876
No 93
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.92 E-value=0.0032 Score=57.15 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=66.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccc-ccc---cCeeEEEEeCC----CCCH----------------------HHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHV-KFY---FDCLAWVRVSI----AYDF----------------------GKMLDD 259 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~---F~~~~wv~vs~----~~~~----------------------~~i~~~ 259 (394)
.+++|+|+.|+|||||.+.++.-..- ... ...+.|+.-.. ..++ ..-..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 48899999999999999999763110 000 01122331110 0011 122344
Q ss_pred HHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHH
Q 016120 260 IIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDL 333 (394)
Q Consensus 260 i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v 333 (394)
+++.++........... +..+. .-.+...|-.++=+|+||.--. |...-..+...+.. ...|..||++|.+.+.
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 55555543221112223 22222 2334444556677899999876 44433344333322 1226678889998766
Q ss_pred Hhhc
Q 016120 334 LASL 337 (394)
Q Consensus 334 ~~~~ 337 (394)
+...
T Consensus 192 ~~~~ 195 (253)
T 2nq2_C 192 VVAI 195 (253)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 94
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.88 E-value=0.011 Score=52.43 Aligned_cols=126 Identities=14% Similarity=0.122 Sum_probs=66.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcc------------ccc-------cc--CeeEEEEeCC----CCCHH----------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF-------YF--DCLAWVRVSI----AYDFG---------- 254 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~-------~F--~~~~wv~vs~----~~~~~---------- 254 (394)
.+++|+|+.|+|||||.+.+..-.. +.. .+ ..+.++.-.. ..++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 4889999999999999999974211 000 00 1123332111 11111
Q ss_pred --------HHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCC
Q 016120 255 --------KMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENG 321 (394)
Q Consensus 255 --------~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~g 321 (394)
.-..++++.++........... +..+. .-.+...|-.++=+++||.--. |...-..+...+..- ..|
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g 190 (224)
T 2pcj_A 111 GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190 (224)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 1223455555554322222233 33332 2344455666777999999876 343333333333221 126
Q ss_pred cEEEEecCChHHHh
Q 016120 322 SRVLITVTDPDLLA 335 (394)
Q Consensus 322 s~IivTTR~~~v~~ 335 (394)
..||++|.+.+.+.
T Consensus 191 ~tvi~vtHd~~~~~ 204 (224)
T 2pcj_A 191 TSIVMVTHERELAE 204 (224)
T ss_dssp CEEEEECSCHHHHT
T ss_pred CEEEEEcCCHHHHH
Confidence 67999999887763
No 95
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.85 E-value=0.0036 Score=56.33 Aligned_cols=128 Identities=14% Similarity=0.059 Sum_probs=66.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeC----CCCCH----------------H
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVS----IAYDF----------------G 254 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs----~~~~~----------------~ 254 (394)
.+++|+|+.|+|||||.+.+..-.. +.. ....+.++.-. ...++ .
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 7899999999999999999975211 000 00011122100 00011 1
Q ss_pred HHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEec
Q 016120 255 KMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITV 328 (394)
Q Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTT 328 (394)
.-..++++.++........... +..+. .-.+...|-.++=+++||.--. +...-..+...+..- ..|..||++|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt 184 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2234566666654322222233 33322 2344455566777899999776 343333333333221 1255688888
Q ss_pred CChHHHhhc
Q 016120 329 TDPDLLASL 337 (394)
Q Consensus 329 R~~~v~~~~ 337 (394)
.+.+.+...
T Consensus 185 Hd~~~~~~~ 193 (240)
T 2onk_A 185 HDLIEAAML 193 (240)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 887655443
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.84 E-value=0.00053 Score=61.08 Aligned_cols=110 Identities=14% Similarity=-0.010 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRD 287 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~ 287 (394)
-.++.|+|..|+||||++..+.+ +...+-..++.+..... .. ....+++.++.... .... ...++.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~---~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLP---SVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSC---CEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCcc---ccccCCHHHHHHHHHH
Confidence 46888899999999999987776 33333222333332221 11 12234444443322 1112 44556666666
Q ss_pred HccCCeE-EEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC
Q 016120 288 YLTNKKY-FIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVT 329 (394)
Q Consensus 288 ~l~~kr~-LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR 329 (394)
.+.+.++ +||+|.+.. +.+..+.+.. +.+ .|-.||+|-+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGL 124 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEec
Confidence 5554444 999999986 3444444433 222 2678999988
No 97
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.82 E-value=0.009 Score=51.03 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=40.7
Q ss_pred ccCCeEEEEEeCCC--C--CchhHHHHHhhCCCCCCCcEEEEec---CChHHHhhchhcCCCceeeCCccCCCCCCCChH
Q 016120 289 LTNKKYFIVLDDVF--D--NSEIWSDLEELLPDDENGSRVLITV---TDPDLLASLEMENGEKIRRDSVLFGGPLIRLKH 361 (394)
Q Consensus 289 l~~kr~LlVlDdv~--~--~~~~~~~l~~~l~~~~~gs~IivTT---R~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 361 (394)
+..++-+++||.+. + +....+.+...+.. .+..+|++| .+...+..++......++. +... +.+
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~-----~~~~--~r~ 166 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIE-----LTPE--NRD 166 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEE-----CCTT--TTT
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEE-----ecCc--CHH
Confidence 55667799999953 2 33344555555544 344466666 3555555554333357888 8888 766
Q ss_pred HHHH
Q 016120 362 EAWQ 365 (394)
Q Consensus 362 ~~~~ 365 (394)
+...
T Consensus 167 ~~~~ 170 (178)
T 1ye8_A 167 VILE 170 (178)
T ss_dssp THHH
T ss_pred HHHH
Confidence 5544
No 98
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.81 E-value=0.034 Score=49.42 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=34.3
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhh-CCCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEEL-LPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~-l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...|-.++-+++||.--. +...-..+... +.....|..||++|.+.+.+..+
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~ 196 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 196 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHC
T ss_pred HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhC
Confidence 3444555677899999877 55555666654 33333466788899887766544
No 99
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.81 E-value=0.0056 Score=57.14 Aligned_cols=87 Identities=7% Similarity=0.027 Sum_probs=56.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccc--cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFY--FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSIL 285 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l 285 (394)
.++-|.|++|+||||||.++... .... =..++||+....++.. .+++++.....---... +.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 37889999999999999887763 3222 2467899888887764 36777665321100111 45555 4443
Q ss_pred HHH--c-cCCeEEEEEeCCCC
Q 016120 286 RDY--L-TNKKYFIVLDDVFD 303 (394)
Q Consensus 286 ~~~--l-~~kr~LlVlDdv~~ 303 (394)
... + +++.-|+|+|-|..
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 333 3 45788999999976
No 100
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.80 E-value=0.0014 Score=55.56 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=35.1
Q ss_pred HHHHHccCCeEEEEEeCCCC--Cch----------------hHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSE----------------IWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~----------------~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...+..++-+++||.-.. +.. ....+...+... ..|..||++|.+.+.+..+
T Consensus 93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 45556677888999998654 222 335556665542 3466788888888766654
No 101
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.79 E-value=0.0096 Score=54.26 Aligned_cols=54 Identities=7% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+|+||.--. |...-..+...+.. ...|..||++|.+.+.+...
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~ 225 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV 225 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence 34445566677899999876 33333333333321 12266799999987766544
No 102
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.76 E-value=0.0026 Score=56.22 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=65.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccc-c--cc---------CeeEEEEeCC----CCCH----------------HHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVK-F--YF---------DCLAWVRVSI----AYDF----------------GKML 257 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F---------~~~~wv~vs~----~~~~----------------~~i~ 257 (394)
.+++|+|+.|+|||||.+.++.-..-. . .| ..+.++.-.. ..++ ..-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 478999999999999999997521100 0 01 1123332111 1111 1223
Q ss_pred HHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChH
Q 016120 258 DDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPD 332 (394)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~ 332 (394)
.++++.++.... ...... +..+. .-.+...|-.++=+++||.--. +...-..+...+... ..|..||++|.+.+
T Consensus 116 ~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 116 MDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp HHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred HHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 445556654432 222233 33222 2334455666777899999876 343333333333221 12556888888765
Q ss_pred HHhhc
Q 016120 333 LLASL 337 (394)
Q Consensus 333 v~~~~ 337 (394)
.+..+
T Consensus 195 ~~~~~ 199 (214)
T 1sgw_A 195 SYCDV 199 (214)
T ss_dssp TTSSE
T ss_pred HHHHh
Confidence 44433
No 103
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.76 E-value=0.0096 Score=53.26 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=33.1
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+|+||.--. +...-..+...+..- ..|..||++|.+.+++..+
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~ 212 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG 212 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTS
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhC
Confidence 34444556677899999876 343334444333321 2367799999998876533
No 104
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.75 E-value=0.0057 Score=55.32 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999875
No 105
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.72 E-value=0.013 Score=52.45 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=32.1
Q ss_pred HHHccCCeEEEEEeCCCC--CchhHHHHHhhCC---CCCCCcEEEEecCChHHHhh
Q 016120 286 RDYLTNKKYFIVLDDVFD--NSEIWSDLEELLP---DDENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 286 ~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~---~~~~gs~IivTTR~~~v~~~ 336 (394)
...|-.++=+++||+--. +...-..+...+. ....|..||++|.+.+.+..
T Consensus 139 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~ 194 (237)
T 2cbz_A 139 ARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ 194 (237)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh
Confidence 334445666889999877 4555556666552 22346678888887665543
No 106
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.71 E-value=0.004 Score=59.25 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRD 287 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~ 287 (394)
-.++.|.|.+|+||||||..+... ....=..++|++....++.. .+..++.......-.+. +.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 458899999999999999988763 22222457899888776653 24455533211000112 55666666655
Q ss_pred Hcc-CCeEEEEEeCCCC
Q 016120 288 YLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 288 ~l~-~kr~LlVlDdv~~ 303 (394)
..+ .+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 554 4567999999865
No 107
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.71 E-value=0.0056 Score=56.24 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5889999999999999999964
No 108
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.70 E-value=0.011 Score=56.41 Aligned_cols=129 Identities=10% Similarity=0.118 Sum_probs=69.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccc------------cc-------cc-CeeEEEEeCC----CCCH-----------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHV------------KF-------YF-DCLAWVRVSI----AYDF----------- 253 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~-------~F-~~~~wv~vs~----~~~~----------- 253 (394)
-.+++|+|+.|+|||||.+.+..-..- .. .+ ..+.+|.-.. ..++
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~ 133 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 133 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999642110 00 00 1123331111 1111
Q ss_pred -------HHHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCC
Q 016120 254 -------GKMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DEN 320 (394)
Q Consensus 254 -------~~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~ 320 (394)
.+-..++++.++........... +-.+ ..-.+...|..++=+|++|.--. +...-..+...+.. ...
T Consensus 134 ~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~ 213 (366)
T 3tui_C 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence 11234455555554322122233 3222 23345556677788999999876 44333444433332 123
Q ss_pred CcEEEEecCChHHHhhc
Q 016120 321 GSRVLITVTDPDLLASL 337 (394)
Q Consensus 321 gs~IivTTR~~~v~~~~ 337 (394)
|..||++|.+.+++..+
T Consensus 214 g~Tii~vTHdl~~~~~~ 230 (366)
T 3tui_C 214 GLTILLITHEMDVVKRI 230 (366)
T ss_dssp CCEEEEEESCHHHHHHH
T ss_pred CCEEEEEecCHHHHHHh
Confidence 67789999988776654
No 109
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.69 E-value=0.0069 Score=55.29 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=32.1
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 337 (394)
.+...|-.++=+|+||.--. |...-..+...+..- ..|..||++|.+.+.+...
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~ 204 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINH 204 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGG
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 34445566777899999877 444334444333221 1266788888886655543
No 110
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.68 E-value=0.0089 Score=56.79 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=67.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccc-c--ccC------------eeEEEEeCCCC------CHH--------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVK-F--YFD------------CLAWVRVSIAY------DFG-------------- 254 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~------------~~~wv~vs~~~------~~~-------------- 254 (394)
.+++|+|+.|+|||||.+.+..-..-. . .|+ .+.+| .+++ ++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV--YQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE--CTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 588999999999999999997521100 0 010 11222 1211 111
Q ss_pred -HHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEe
Q 016120 255 -KMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLIT 327 (394)
Q Consensus 255 -~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivT 327 (394)
.-..++++.++........... +-.+. .-.+...|-.++=+|+||.--. |...-..+...+.. ...|..||++
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2234566666654332222233 33322 3345556667788999999766 33332333333321 1236678888
Q ss_pred cCChHHHhhc
Q 016120 328 VTDPDLLASL 337 (394)
Q Consensus 328 TR~~~v~~~~ 337 (394)
|.+.+.+..+
T Consensus 185 THd~~~~~~~ 194 (348)
T 3d31_A 185 THDQTEARIM 194 (348)
T ss_dssp ESCHHHHHHH
T ss_pred eCCHHHHHHh
Confidence 8887765544
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.67 E-value=0.0064 Score=53.99 Aligned_cols=94 Identities=3% Similarity=-0.049 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCC----CccccCc-CHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSR----VSVIIGE-DYQ 279 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----~~~~~~~-~~~ 279 (394)
-.++.|+|++|+|||||+..+........ .-..++|++....+....+ ..++..++.... ...-... +..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 45889999999999999999876311111 1246788887765555443 344455543210 0000011 222
Q ss_pred ---HHHHHHHHHcc-CCeEEEEEeCCCC
Q 016120 280 ---LKKSILRDYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 280 ---~~~~~l~~~l~-~kr~LlVlDdv~~ 303 (394)
.....+.+.+. .+.-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 23334555553 4678999999876
No 112
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.67 E-value=0.0052 Score=57.78 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC----ccccCc-CHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV----SVIIGE-DYQ 279 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----~~~~~~-~~~ 279 (394)
-.++.|+|.+|+||||||..++........ -..++|++....++...+. +++..++..... ..-.+. +.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 458899999999999999988763211111 2467899888877776655 345555443210 000011 222
Q ss_pred ---HHHHHHHHHcc--CCeEEEEEeCCCC
Q 016120 280 ---LKKSILRDYLT--NKKYFIVLDDVFD 303 (394)
Q Consensus 280 ---~~~~~l~~~l~--~kr~LlVlDdv~~ 303 (394)
.+...+...++ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 34455555553 4677999999875
No 113
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.61 E-value=0.011 Score=53.17 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 114
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.56 E-value=0.0092 Score=56.81 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=66.9
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeC----CCCCH-----------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVS----IAYDF----------------- 253 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs----~~~~~----------------- 253 (394)
.+++|+|+.|+|||||.+.++.-.. +.. .-..+.+|.-. ...++
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 5889999999999999999974211 000 00112233111 11111
Q ss_pred -HHHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 016120 254 -GKMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLI 326 (394)
Q Consensus 254 -~~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~Iiv 326 (394)
.+-..++++.++........... +-.+ ..-.+...|-.++=+|+||.--. |...-..+...+..- ..|..||+
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12234556666553221112233 2222 23344555666777999999776 333323333332211 22567888
Q ss_pred ecCChHHHhhc
Q 016120 327 TVTDPDLLASL 337 (394)
Q Consensus 327 TTR~~~v~~~~ 337 (394)
+|.+.+.+..+
T Consensus 202 vTHd~~~a~~~ 212 (355)
T 1z47_A 202 VTHDQEEALEV 212 (355)
T ss_dssp ECSCHHHHHHH
T ss_pred ECCCHHHHHHh
Confidence 99988766555
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.55 E-value=0.0066 Score=58.11 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRD 287 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~ 287 (394)
-.++.|.|.+|+||||||..+... ....-..++|++....++.. .+..++.......-.+. +.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 457888999999999999888763 22222467899888777654 24445443210000112 56667777766
Q ss_pred Hcc-CCeEEEEEeCCCC
Q 016120 288 YLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 288 ~l~-~kr~LlVlDdv~~ 303 (394)
..+ +..-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 664 3456999999865
No 116
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.54 E-value=0.02 Score=52.34 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhh
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~ 336 (394)
.+...|-.++=+|+||.--. +...-..+...+... ..|..||++|.+.+.+..
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~ 222 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER 222 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence 34444556677899999876 444434444433322 236678888988776654
No 117
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.54 E-value=0.0056 Score=58.40 Aligned_cols=88 Identities=15% Similarity=-0.001 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRD 287 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~ 287 (394)
-.++.|.|.+|+||||||..+... ....-..++|++....++... +..++.......-.+. +.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 458899999999999999888763 222223678998887776442 4455433210000111 45555555554
Q ss_pred Hcc-CCeEEEEEeCCCC
Q 016120 288 YLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 288 ~l~-~kr~LlVlDdv~~ 303 (394)
..+ .+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 442 4556999999865
No 118
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.52 E-value=0.0021 Score=55.79 Aligned_cols=117 Identities=12% Similarity=-0.012 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC---CCCHHHHHHHHHHHhC-------CCCC-Ccccc--C
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI---AYDFGKMLDDIIKSVM-------PPSR-VSVII--G 275 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~i~~~l~-------~~~~-~~~~~--~ 275 (394)
...|-|++-.|.||||.|-.+.- +.-.+=-.+..+..-+ ......++ ..++ .... ..++. +
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 34566677777999999977654 2222222233332222 22233333 3331 0000 00000 0
Q ss_pred c-CHHHHHHHHHHHccCCe-EEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120 276 E-DYQLKKSILRDYLTNKK-YFIVLDDVFD----NSEIWSDLEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 276 ~-~~~~~~~~l~~~l~~kr-~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~IivTTR~~ 331 (394)
. .........++.+.+.+ =|||||++-. ..-..+.+...+.....+..||+|+|+.
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1 22334455556665544 4999999843 1233455666665556667899999985
No 119
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.50 E-value=0.002 Score=56.39 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=28.7
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++|.+.+....+.-.+++|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555565554333467999999999999999999876
No 120
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.018 Score=54.99 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeCC----CCCH----------------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVSI----AYDF---------------- 253 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs~----~~~~---------------- 253 (394)
-.+++|+|+.|+|||||.+.++.-.. +.. .-..+.+|.-.. ..++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE 108 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 35889999999999999999975211 000 001123331111 1111
Q ss_pred --HHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEE
Q 016120 254 --GKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVL 325 (394)
Q Consensus 254 --~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~Ii 325 (394)
.+-..++++.++........... +-.+. .-.+...|-.++=+|+||.--. |...-..+...+..- ..|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (362)
T 2it1_A 109 EIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188 (362)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 11234556666654322222233 33222 2345555666777899998655 333223333332211 2256788
Q ss_pred EecCChHHHhhc
Q 016120 326 ITVTDPDLLASL 337 (394)
Q Consensus 326 vTTR~~~v~~~~ 337 (394)
++|.+.+.+..+
T Consensus 189 ~vTHd~~~a~~~ 200 (362)
T 2it1_A 189 YVTHDQAEALAM 200 (362)
T ss_dssp EEESCHHHHHHH
T ss_pred EECCCHHHHHHh
Confidence 888887766544
No 121
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.45 E-value=0.0098 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999974
No 122
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.44 E-value=0.0079 Score=56.36 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCccccc---------cc-----CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC---
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKF---------YF-----DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV--- 270 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--- 270 (394)
.-.++.|.|.+|+|||+||..++....... .. ..++|++....++..++.. ++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 346889999999999999988875321111 11 3678998888877776653 45555543110
Q ss_pred -ccccCc-CHH---HHHHHHHHHcc--CCeEEEEEeCCCC
Q 016120 271 -SVIIGE-DYQ---LKKSILRDYLT--NKKYFIVLDDVFD 303 (394)
Q Consensus 271 -~~~~~~-~~~---~~~~~l~~~l~--~kr~LlVlDdv~~ 303 (394)
..-.+. +.+ .+...+...++ .+.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 000011 222 34555666664 3567999999865
No 123
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.40 E-value=0.023 Score=53.75 Aligned_cols=95 Identities=6% Similarity=0.032 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------ccccCc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-------SVIIGE 276 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~~~~~ 276 (394)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+. +++..++..... ....+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 456889999999999999998876322211 12467899888877776654 344555432100 000111
Q ss_pred -CHHHHHHHHHHHcc---CCeEEEEEeCCCC
Q 016120 277 -DYQLKKSILRDYLT---NKKYFIVLDDVFD 303 (394)
Q Consensus 277 -~~~~~~~~l~~~l~---~kr~LlVlDdv~~ 303 (394)
....+...+...++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 22234444555553 5667999999875
No 124
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.38 E-value=0.003 Score=54.96 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=32.6
Q ss_pred ecccHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHhc
Q 016120 191 FERGREELFDLLIEGP-SGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 191 r~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
|+..++++.+.+.... ....+++|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556777888777542 3467999999999999999999876
No 125
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.38 E-value=0.016 Score=55.71 Aligned_cols=128 Identities=9% Similarity=0.081 Sum_probs=65.7
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccc------------c---cccCeeEEEEeCC----CCCH-----------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHV------------K---FYFDCLAWVRVSI----AYDF----------------- 253 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~------------~---~~F~~~~wv~vs~----~~~~----------------- 253 (394)
.+++|+|+.|+|||||.+.+..-..- . ..-..+.+|.-.. ..++
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~ 109 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 109 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 58899999999999999999752110 0 0001122331111 1111
Q ss_pred -HHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 016120 254 -GKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLI 326 (394)
Q Consensus 254 -~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~Iiv 326 (394)
.+-..++++.++........... +-.+. .-.+...|..++=+|+||.--. +...-..+...+..- ..|..||+
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~ 189 (381)
T 3rlf_A 110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 (381)
T ss_dssp HHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 12234556665554322222223 22222 2334444555667899999766 333333333333221 23667888
Q ss_pred ecCChHHHhhc
Q 016120 327 TVTDPDLLASL 337 (394)
Q Consensus 327 TTR~~~v~~~~ 337 (394)
+|.+...+..+
T Consensus 190 vTHd~~ea~~~ 200 (381)
T 3rlf_A 190 VTHDQVEAMTL 200 (381)
T ss_dssp ECSCHHHHHHH
T ss_pred EECCHHHHHHh
Confidence 88887666554
No 126
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.34 E-value=0.05 Score=49.54 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~ 336 (394)
+...|-.++=+|+||.--. |...-..+...+... ..|..||++|.+.+.+..
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 3344445667899999877 444444444443322 346779999998776554
No 127
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.34 E-value=0.0018 Score=61.20 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=35.1
Q ss_pred ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..++.+...+... +.....+.++|++|+||||||+.+++
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 7888887777776665432 22346788999999999999999998
No 128
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.33 E-value=0.032 Score=53.06 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=67.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcc------------cc---cc----cCeeEEEEeCC----CCC--------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDH------------VK---FY----FDCLAWVRVSI----AYD-------------- 252 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~---~~----F~~~~wv~vs~----~~~-------------- 252 (394)
.+++|+|+.|+|||||.+.+..-.. +. .. -..+.+|.-.. ..+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999975211 00 00 01122331110 001
Q ss_pred ----HHHHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCc
Q 016120 253 ----FGKMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGS 322 (394)
Q Consensus 253 ----~~~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs 322 (394)
..+-..++++.++........... +-.+ ..-.+...|-.++=+|+||.--. +...-..+...+.. ...|.
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~ 190 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK 190 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 122345566666554322222233 2222 23344555666777899999766 33322333222211 13467
Q ss_pred EEEEecCChHHHhhc
Q 016120 323 RVLITVTDPDLLASL 337 (394)
Q Consensus 323 ~IivTTR~~~v~~~~ 337 (394)
.||++|.+...+..+
T Consensus 191 tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 191 SAVFVSHDREEALQY 205 (359)
T ss_dssp EEEEECCCHHHHHHH
T ss_pred EEEEEeCCHHHHHHH
Confidence 789999988766655
No 129
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.32 E-value=0.019 Score=54.76 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeCC----CCCH----------------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVSI----AYDF---------------- 253 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs~----~~~~---------------- 253 (394)
-.+++|+|+.|+|||||.+.+..-.. +.. .-..+.+|.-.. ..++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKD 108 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 35889999999999999999975211 000 001122331110 1111
Q ss_pred --HHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEE
Q 016120 254 --GKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVL 325 (394)
Q Consensus 254 --~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~Ii 325 (394)
..-..++++.++........... +-.+. .-.+...|-.++=+|+||.--. |...-..+...+.. ...|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (359)
T 2yyz_A 109 EVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188 (359)
T ss_dssp HTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 11234566666553221112223 22222 2345555666777899999766 33322333332221 12256788
Q ss_pred EecCChHHHhhc
Q 016120 326 ITVTDPDLLASL 337 (394)
Q Consensus 326 vTTR~~~v~~~~ 337 (394)
++|.+.+.+..+
T Consensus 189 ~vTHd~~~~~~~ 200 (359)
T 2yyz_A 189 YVTHDQAEAMTM 200 (359)
T ss_dssp EEESCHHHHHHH
T ss_pred EEcCCHHHHHHh
Confidence 888887766554
No 130
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.24 E-value=0.017 Score=55.31 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=65.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeC----CC---------------CCH-
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVS----IA---------------YDF- 253 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs----~~---------------~~~- 253 (394)
-.+++|+|+.|+|||||.+.+..-.. +.. +-..+.+|.-. .. ...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 116 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 116 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHH
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 35889999999999999999974211 000 00012222110 00 011
Q ss_pred --HHHHHHHHHHhCCCCCCcc---ccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEE
Q 016120 254 --GKMLDDIIKSVMPPSRVSV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRV 324 (394)
Q Consensus 254 --~~i~~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~I 324 (394)
..-..++++.++....... .++....+.. .+...|-.++=+|+||.--. |...-..+...+..- ..|..|
T Consensus 117 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv-alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 195 (372)
T 1v43_A 117 EIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV-AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 195 (372)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH-HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH-HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 1234556666655322111 2222333333 34455556677899999766 333323333333211 225678
Q ss_pred EEecCChHHHhhc
Q 016120 325 LITVTDPDLLASL 337 (394)
Q Consensus 325 ivTTR~~~v~~~~ 337 (394)
|++|.+...+..+
T Consensus 196 i~vTHd~~~a~~~ 208 (372)
T 1v43_A 196 IYVTHDQVEAMTM 208 (372)
T ss_dssp EEEESCHHHHHHH
T ss_pred EEEeCCHHHHHHh
Confidence 8888887766554
No 131
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.23 E-value=0.083 Score=48.72 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=33.9
Q ss_pred HHHHccCCeEEEEEeCCCC--CchhHHHHHhhC-CCCCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELL-PDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l-~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+...|-.++=+++||.--. +...-..+...+ .....|..||++|.+.+.+..+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~ 225 (290)
T 2bbs_A 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 225 (290)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHS
T ss_pred HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcC
Confidence 3444555667899999877 555555565543 2333466789999987766544
No 132
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.15 E-value=0.0025 Score=53.34 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.7
Q ss_pred eEEEEEcCCCccHHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADT 229 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v 229 (394)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 133
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.13 E-value=0.026 Score=53.64 Aligned_cols=128 Identities=18% Similarity=0.184 Sum_probs=67.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcc------------ccc-------cc-CeeEEEEeCC----CCCH------------
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF-------YF-DCLAWVRVSI----AYDF------------ 253 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~-------~F-~~~~wv~vs~----~~~~------------ 253 (394)
.+++|+|+.|+|||||.+.++.-.. +.. .. ..+.+|.-.. ..++
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 5889999999999999999974211 000 00 1122331111 1111
Q ss_pred ------HHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCC
Q 016120 254 ------GKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENG 321 (394)
Q Consensus 254 ------~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~g 321 (394)
.+-..++++.++........... +-.+. .-.+...|-.++=+|+||.--. |...-..+...+..- ..|
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 191 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12344566666554321122233 32222 3345555667778999999766 333333333333221 225
Q ss_pred cEEEEecCChHHHhhc
Q 016120 322 SRVLITVTDPDLLASL 337 (394)
Q Consensus 322 s~IivTTR~~~v~~~~ 337 (394)
..||++|.+.+.+..+
T Consensus 192 ~tvi~vTHd~~~~~~~ 207 (353)
T 1oxx_K 192 VTLLVVSHDPADIFAI 207 (353)
T ss_dssp CEEEEEESCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHh
Confidence 6788888887766554
No 134
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.12 E-value=0.031 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4889999999999999999975
No 135
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.06 E-value=0.0057 Score=56.65 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 206 PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 206 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34577999999999999999998876
No 136
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.06 E-value=0.0029 Score=53.57 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 137
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.04 E-value=0.0039 Score=59.48 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=35.2
Q ss_pred ccceecccHHHHHHHHh-------------cCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLI-------------EGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46898888888888773 1112345678999999999999999988
No 138
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.02 E-value=0.02 Score=54.35 Aligned_cols=95 Identities=9% Similarity=0.099 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCccccccc----CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------ccccCc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYF----DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-------SVIIGE 276 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~~~~~ 276 (394)
.-.++.|+|++|+|||||+..++......... ..++|++....+....+ ..+++..+..... ......
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 35699999999999999999988632111111 23488877665544433 3344444322100 000111
Q ss_pred -CHHHHHHHHHHHcc------CCeEEEEEeCCCC
Q 016120 277 -DYQLKKSILRDYLT------NKKYFIVLDDVFD 303 (394)
Q Consensus 277 -~~~~~~~~l~~~l~------~kr~LlVlDdv~~ 303 (394)
...++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 23344455555553 4678999999977
No 139
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.95 E-value=0.0035 Score=52.51 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.94 E-value=0.023 Score=55.03 Aligned_cols=94 Identities=6% Similarity=-0.038 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------ccccCc-
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-------SVIIGE- 276 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~~~~~- 276 (394)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....+....+ ..+++.++..... ......
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 4589999999999999999765311111 12245788887776665554 3366666543110 000111
Q ss_pred CHHHHHHHHHHHc-cCCeEEEEEeCCCC
Q 016120 277 DYQLKKSILRDYL-TNKKYFIVLDDVFD 303 (394)
Q Consensus 277 ~~~~~~~~l~~~l-~~kr~LlVlDdv~~ 303 (394)
........+...+ ..+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1122333333443 34678999999765
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.92 E-value=0.0047 Score=52.84 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 142
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.91 E-value=0.014 Score=55.53 Aligned_cols=113 Identities=14% Similarity=0.057 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-c-cccCcCHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-S-VIIGEDYQLKKSILR 286 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~-~~~~~~~~~~~~~l~ 286 (394)
-.+++|+|+.|+|||||.+.+.. .+.......++ .+..+.... ....... . .............+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La 190 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALR 190 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHhh---------hhccccceeeeeeccccCCHHHHHH
Confidence 35899999999999999998876 22211112221 121211100 0000000 0 000111123344778
Q ss_pred HHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 287 DYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 287 ~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
..|...+=+|++|.+.+ .+.++.+.... ..|..||+||...+.+..+
T Consensus 191 ~aL~~~PdvillDEp~d-~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~ 237 (356)
T 3jvv_A 191 SALREDPDIILVGEMRD-LETIRLALTAA---ETGHLVFGTLHTTSAAKTI 237 (356)
T ss_dssp HHTTSCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEESCSSHHHHH
T ss_pred HHhhhCcCEEecCCCCC-HHHHHHHHHHH---hcCCEEEEEEccChHHHHH
Confidence 88888888999999998 77666655442 3366789999887766443
No 143
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.89 E-value=0.027 Score=55.51 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=25.2
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+..+...+...+ +.+.|.|.+|+|||+++..+..
T Consensus 33 av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 33 AFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 3344444444433 3888999999999999988876
No 144
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.89 E-value=0.012 Score=58.79 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=36.0
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.++|.+..++.+...+..+ .-+.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 6789999998888888764 35679999999999999999983
No 145
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.87 E-value=0.028 Score=57.46 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=69.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccc-ccc--cC-eeEEEEeCC----CCCHHHH--------------HHHHHHHhCCC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHV-KFY--FD-CLAWVRVSI----AYDFGKM--------------LDDIIKSVMPP 267 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~vs~----~~~~~~i--------------~~~i~~~l~~~ 267 (394)
.+++|+|+.|+|||||.+.++.-..- ... +. .+.++.-.. ..++... ..++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 48999999999999999999863211 111 11 223432111 1122221 23445555554
Q ss_pred CCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 268 SRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 268 ~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
......... +..+.+ -.+...|...+-+|+||.--. |...-..+...+..- ..|..||++|.+...+...
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 322223334 333333 344555667778899999766 343333333333221 2355688888888776655
No 146
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.86 E-value=0.01 Score=62.49 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=56.1
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 255 (394)
++.|.++.+++|.+.+.-. -...+-+.++|++|+|||.+|+.+++ +....| +.++ ..
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~----~~- 545 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GP- 545 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECC----HH-
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEec----cc-
Confidence 6778887777776665421 12334567999999999999999998 443332 2221 11
Q ss_pred HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 303 (394)
+++.... ..+...+.......-+..+++|++|++..
T Consensus 546 ---~l~s~~v---------Gese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 546 ---ELLTMWF---------GESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ---HHHTTTC---------SSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ---hhhcccc---------chHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 2222111 11344444444444456789999999874
No 147
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.82 E-value=0.0046 Score=52.16 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 148
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.81 E-value=0.0046 Score=53.63 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45889999999999999999986
No 149
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.80 E-value=0.0046 Score=52.72 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|++|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5889999999999999999976
No 150
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.79 E-value=0.0026 Score=67.47 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=35.2
Q ss_pred ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
++.|.+..++.+.+.+... -.....+.++|++|+|||+||+.+++
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 7888888888888776421 01334578999999999999999998
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.75 E-value=0.081 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999998876
No 152
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.71 E-value=0.0063 Score=52.74 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.-.+|+|+|++|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 153
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.71 E-value=0.0043 Score=52.16 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 154
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.70 E-value=0.015 Score=58.59 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=66.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccc-ccc--cC-eeEEEEeCC----CCCHHHHHHH--------------HHHHhCCC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHV-KFY--FD-CLAWVRVSI----AYDFGKMLDD--------------IIKSVMPP 267 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~vs~----~~~~~~i~~~--------------i~~~l~~~ 267 (394)
.+++|+|+.|+|||||++.++.-..- ... +. .+.++.-.. ..++...+.. ++..++..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 58999999999999999999863211 111 12 123432111 1223332221 11122221
Q ss_pred CCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120 268 SRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 268 ~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~ 337 (394)
......... +-.+. .-.+...|..++-+|+||.--+ |...-..+...+..- ..|..||++|.+.+.+..+
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 111122233 33333 3345556677788999999776 444333444333321 2355688888887766655
No 155
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.68 E-value=0.039 Score=55.54 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999975
No 156
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.65 E-value=0.0054 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999976
No 157
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.057 Score=55.14 Aligned_cols=128 Identities=10% Similarity=0.005 Sum_probs=68.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCccc--cccc-C-eeEEEEeC------------------CCCCHHHHHHHHHHHhCCC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHV--KFYF-D-CLAWVRVS------------------IAYDFGKMLDDIIKSVMPP 267 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F-~-~~~wv~vs------------------~~~~~~~i~~~i~~~l~~~ 267 (394)
.+++|+|+.|+|||||++.+..-..- .... . ...++.-. ..+.......++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 47999999999999999999752111 1000 0 11222110 0111122334455555544
Q ss_pred CCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120 268 SRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 268 ~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~ 337 (394)
....+.... +-.+.+ -.+...|..++=+|+||.--. |...-..+...+.. ...|..||++|.+.+.+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 332223344 333333 345566777888999999766 33322333322221 12356688888888777665
No 158
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.58 E-value=0.0051 Score=53.05 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3477999999999999999876
No 159
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.58 E-value=0.0072 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999976
No 160
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.57 E-value=0.0065 Score=51.82 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 161
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.56 E-value=0.0065 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 162
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.54 E-value=0.0095 Score=50.20 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 163
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.50 E-value=0.024 Score=57.13 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=63.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccc-cc--cC--eeEEEEeC--C--CCCHHHHHH---------------HHHHHhC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVK-FY--FD--CLAWVRVS--I--AYDFGKMLD---------------DIIKSVM 265 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~--~~~wv~vs--~--~~~~~~i~~---------------~i~~~l~ 265 (394)
.+++|+|+.|+|||||++.++.-..-. .. +. ...++.-. . ...+.+.+. ++++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 489999999999999999998631110 00 11 11222111 0 112222211 1111111
Q ss_pred CCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120 266 PPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 266 ~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~ 337 (394)
........... +-.+. .-.+...|..++=+|+||.--. |...-..+...+.. ...|..||++|.+.+.+..+
T Consensus 375 l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~ 452 (538)
T 3ozx_A 375 LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI 452 (538)
T ss_dssp GGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 11111112233 32322 3344555667777899999776 33332333333321 12356688888888777665
No 164
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.49 E-value=0.034 Score=54.64 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=37.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC-HHHHHHHHH
Q 016120 198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD-FGKMLDDII 261 (394)
Q Consensus 198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~ 261 (394)
.++.|..-..+ ..++|+|.+|+|||||++.+..+... .+-+..+++-+++..+ ..+++.++.
T Consensus 141 ~ID~L~pi~kG-q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYIKG-GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEETT-CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhhhccC-CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 45555432222 35789999999999999999874222 1224556777776653 334444443
No 165
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.46 E-value=0.0078 Score=54.28 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 166
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.45 E-value=0.0055 Score=53.11 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 167
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.44 E-value=0.007 Score=51.55 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 168
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.43 E-value=0.012 Score=54.21 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 195 REELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 195 ~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++++..++.. .....++.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44444444433 23456889999999999999999976
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.43 E-value=0.0087 Score=52.11 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 170
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.40 E-value=0.0086 Score=51.19 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 171
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.40 E-value=0.043 Score=47.92 Aligned_cols=84 Identities=10% Similarity=0.107 Sum_probs=46.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC--------CCCHHHHHHHHHHHhCCCCCCccccCcCHHHHH
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI--------AYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKK 282 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--------~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~ 282 (394)
+|.|.|++|+||+|.|+.+..+ |.. ..++.+. ........+.++..-... ..+-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g~-~~istGdllR~~i~~~t~lg~~~~~~~~~G~lv---------pd~iv~ 65 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KGF-VHISTGDILREAVQKGTPLGKKAKEYMERGELV---------PDDLII 65 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HCC-EEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCC---------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HCC-eEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcC---------CHHHHH
Confidence 5778999999999999999873 321 2222111 111112222222221111 445566
Q ss_pred HHHHHHccCCeEEEEEeCCCCCchhHHHH
Q 016120 283 SILRDYLTNKKYFIVLDDVFDNSEIWSDL 311 (394)
Q Consensus 283 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~l 311 (394)
..+.+.+..... +|||+.-.+..+-+.+
T Consensus 66 ~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 66 ALIEEVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HHHHHHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred HHHHHhhccCCc-eEecCCchhHHHHHHH
Confidence 777888865443 6889987633333333
No 172
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.40 E-value=0.008 Score=56.62 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=31.8
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..+..+...+.... ..-+.|+|.+|+|||+||+.+.+
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 89999886665544443321 22377999999999999999987
No 173
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.39 E-value=0.0015 Score=56.34 Aligned_cols=22 Identities=14% Similarity=-0.088 Sum_probs=18.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4778999999999999865554
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.39 E-value=0.0085 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 175
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.39 E-value=0.061 Score=57.70 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=67.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccC----eeEEEEeCCCC-------CH-----------HHHHHHHHHHhCCC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFD----CLAWVRVSIAY-------DF-----------GKMLDDIIKSVMPP 267 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~-------~~-----------~~i~~~i~~~l~~~ 267 (394)
.+++|+|+.|+|||||.+.+... .+. .++ .. .+.+.+.. ++ ..-..++++.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECR-TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCcccccee-EEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 48899999999999999999842 111 111 11 12222211 11 22344566666653
Q ss_pred C-CCccccCc-CHH-HHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 268 S-RVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 268 ~-~~~~~~~~-~~~-~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
. ........ +.. ...-.+...|-.++=+|+||.--+ +...-..+...+.. .|..||++|.+......+
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 1 10112223 222 222334444556677899999876 44444444444443 366788888887766554
No 176
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.38 E-value=0.0089 Score=52.22 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 177
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.37 E-value=0.012 Score=55.74 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=31.0
Q ss_pred ceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 189 NEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 189 ~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
++.+...+++++.+... ......+.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34455566676666432 23456788999999999999998876
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.37 E-value=0.0066 Score=51.99 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 179
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.37 E-value=0.0094 Score=51.34 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhc
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 180
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.36 E-value=0.01 Score=51.56 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 181
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.35 E-value=0.0079 Score=51.80 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999987
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.34 E-value=0.0095 Score=51.48 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 183
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.11 Score=53.09 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCCCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHH---HHHhhCCCCCCCcEEEEec
Q 016120 256 MLDDIIKSVMPPSRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWS---DLEELLPDDENGSRVLITV 328 (394)
Q Consensus 256 i~~~i~~~l~~~~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~---~l~~~l~~~~~gs~IivTT 328 (394)
-..++++.++........... +..+.+ -.+...|..++=+|+||.--. +...-. .+...+. ..|..||++|
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vt 278 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVE 278 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG--TTTCEEEEEC
T ss_pred HHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHH--hCCCEEEEEe
Confidence 345667777665332223333 322222 233444555666899998776 333222 2233332 2355688888
Q ss_pred CChHHHhhc
Q 016120 329 TDPDLLASL 337 (394)
Q Consensus 329 R~~~v~~~~ 337 (394)
.+.+.+..+
T Consensus 279 Hdl~~~~~~ 287 (608)
T 3j16_B 279 HDLSVLDYL 287 (608)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 887766655
No 184
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.32 E-value=0.0072 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 185
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.30 E-value=0.0073 Score=57.87 Aligned_cols=53 Identities=9% Similarity=-0.125 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-ccccCeeEEEEeCCCC
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYFDCLAWVRVSIAY 251 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~ 251 (394)
++++.+..-. .-..++|+|.+|+|||||++.+.+.-.. ...+.+ +++-+++..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 3445554432 2347789999999999999988762111 112333 356666554
No 186
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.29 E-value=0.0083 Score=52.79 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 187
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.28 E-value=0.0074 Score=52.49 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++.|+|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999976
No 188
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.27 E-value=0.0095 Score=51.00 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 189
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.27 E-value=0.039 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|.+|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 357999999999999999998886
No 190
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.25 E-value=0.0088 Score=51.78 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999876
No 191
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.25 E-value=0.012 Score=52.89 Aligned_cols=36 Identities=14% Similarity=-0.035 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++...+.........|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 16 NELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334333333223467899999999999999999976
No 192
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.25 E-value=0.014 Score=54.76 Aligned_cols=43 Identities=9% Similarity=0.008 Sum_probs=29.6
Q ss_pred ceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 189 NEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 189 ~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|-...+..+...+... .....+++|.|..|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33334444444444443 24567999999999999999998865
No 193
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.24 E-value=0.0099 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 194
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.24 E-value=0.011 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 195
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.24 E-value=0.04 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 196
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.23 E-value=0.01 Score=50.70 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...|.|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999977
No 197
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.22 E-value=0.011 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|.|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 198
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.22 E-value=0.068 Score=50.21 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 199
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.21 E-value=0.0094 Score=49.89 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.20 E-value=0.089 Score=51.32 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 201
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.20 E-value=0.0098 Score=53.80 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 202
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.18 E-value=0.0081 Score=52.11 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.15 E-value=0.1 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.105 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++|.++|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 204
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.13 E-value=0.1 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+..+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999888765
No 205
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.10 E-value=0.012 Score=53.47 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999999986
No 206
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.10 E-value=0.015 Score=52.38 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 195 REELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 195 ~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+.+...+..+ .....++.++|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444433 23456899999999999999999976
No 207
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.10 E-value=0.011 Score=50.12 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..|.+.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 208
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.08 E-value=0.012 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 209
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.08 E-value=0.01 Score=50.12 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 210
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.08 E-value=0.008 Score=51.11 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 211
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.07 E-value=0.011 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 212
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.05 E-value=0.013 Score=49.88 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|.|+|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356889999999999999999987
No 213
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.04 E-value=0.011 Score=50.74 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 214
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.03 E-value=0.013 Score=50.77 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 215
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.01 E-value=0.013 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 216
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.00 E-value=0.039 Score=63.20 Aligned_cols=88 Identities=15% Similarity=-0.015 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILR 286 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~ 286 (394)
.-+.+.|+|++|+|||+||.++.. +...+=..++|+++...++... ++.++..-..-.-... +.++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456888999999999999998877 3333334567888888777665 4455422111000011 4455556666
Q ss_pred HHcc-CCeEEEEEeCCC
Q 016120 287 DYLT-NKKYFIVLDDVF 302 (394)
Q Consensus 287 ~~l~-~kr~LlVlDdv~ 302 (394)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5553 577899999995
No 217
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.00 E-value=0.29 Score=45.81 Aligned_cols=137 Identities=11% Similarity=-0.042 Sum_probs=83.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcC
Q 016120 198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGED 277 (394)
Q Consensus 198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~ 277 (394)
+.+.|. + .-.++..++|..|.||++.+..+.+... ...|+...-+.+.... +
T Consensus 9 l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-------------------------~ 60 (343)
T 1jr3_D 9 LRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT-------------------------D 60 (343)
T ss_dssp HHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC-------------------------C
T ss_pred HHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC-------------------------C
Confidence 444444 2 3466888999999999999988876211 1234322222222222 3
Q ss_pred HHHHHHHHHHH-ccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCC-------hHHHhhchhcCCCceee
Q 016120 278 YQLKKSILRDY-LTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTD-------PDLLASLEMENGEKIRR 347 (394)
Q Consensus 278 ~~~~~~~l~~~-l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~-------~~v~~~~~~~~~~~~~~ 347 (394)
..++.+.+... +-+++-++|+|++.. +...++.+...+....+++.+|++|.. ..+...+ .+...+++
T Consensus 61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i--~sr~~~~~ 138 (343)
T 1jr3_D 61 WNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTAL--ANRSVQVT 138 (343)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHH--TTTCEEEE
T ss_pred HHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHH--HhCceEEE
Confidence 33333333322 345667888999854 367788888887766667777776543 2455554 24556788
Q ss_pred CCccCCCCCCCChHHHHHHHHHHh
Q 016120 348 DSVLFGGPLIRLKHEAWQFFILHY 371 (394)
Q Consensus 348 ~~~~~l~~L~~~~~~~~~Lf~~~~ 371 (394)
..++ +.++....+.+.+
T Consensus 139 -----~~~l--~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 139 -----CQTP--EQAQLPRWVAARA 155 (343)
T ss_dssp -----ECCC--CTTHHHHHHHHHH
T ss_pred -----eeCC--CHHHHHHHHHHHH
Confidence 8999 8887776666654
No 218
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.99 E-value=0.013 Score=54.73 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+.++|+|.|-|||||||.+..+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 578999999999999998877754
No 219
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.99 E-value=0.32 Score=47.52 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
.-.++.|.|.+|+||||||..++.+..... =..++|++.. .+...+...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 345888999999999999988876422211 1246676553 4556666666543
No 220
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.97 E-value=0.056 Score=53.33 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=62.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC-HHHHHHHHHHHhCCC-------CC
Q 016120 198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD-FGKMLDDIIKSVMPP-------SR 269 (394)
Q Consensus 198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~~ 269 (394)
.++.|..-.. =..++|.|.+|+|||+|++.+.++. .+.+-+.++++-+++... ..+++.++...-... ..
T Consensus 155 vID~l~pigk-Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRR-GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCT-TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeeccccc-CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4566654332 2356899999999999999888731 233457888888888764 556666666542221 00
Q ss_pred Cc--cccCc------CHHHHHHHHHHHcc---CCeEEEEEeCCCC
Q 016120 270 VS--VIIGE------DYQLKKSILRDYLT---NKKYFIVLDDVFD 303 (394)
Q Consensus 270 ~~--~~~~~------~~~~~~~~l~~~l~---~kr~LlVlDdv~~ 303 (394)
.- ...+. -.....-.+.++++ ++..||++||+..
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00 00011 12233444556654 5899999999843
No 221
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.97 E-value=0.0098 Score=49.86 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999976
No 222
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.96 E-value=0.015 Score=54.44 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999876
No 223
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.90 E-value=0.013 Score=48.81 Aligned_cols=21 Identities=5% Similarity=-0.099 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999977
No 224
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.88 E-value=0.0097 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 225
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.88 E-value=0.075 Score=51.74 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988875
No 226
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.87 E-value=0.014 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.310 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 227
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.87 E-value=0.022 Score=49.91 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999988763
No 228
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.87 E-value=0.044 Score=47.93 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccc---c-ccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVK---F-YFDCLAWVRVSIAYDFGKMLDDIIKSV 264 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l 264 (394)
-.+++|+|++|+|||||++.++...... . .-...+|+.-...+.... ...+.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~ 83 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 83 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHc
Confidence 4689999999999999999997521111 1 123577877655444333 33344443
No 229
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.87 E-value=0.08 Score=52.03 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=60.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC-HHHHHHHHHHHhCCC------CC
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD-FGKMLDDIIKSVMPP------SR 269 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~------~~ 269 (394)
+.++.|..-. +=..++|.|.+|+|||+|++.+.++. .+.+-+.++++-+++... ..+++.++...-... ..
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 4566665432 22467899999999999999988731 233446677888887654 455666666542221 00
Q ss_pred Cc--cccCcC------HHHHHHHHHHHc---cCCeEEEEEeCCC
Q 016120 270 VS--VIIGED------YQLKKSILRDYL---TNKKYFIVLDDVF 302 (394)
Q Consensus 270 ~~--~~~~~~------~~~~~~~l~~~l---~~kr~LlVlDdv~ 302 (394)
.- ...+.. .....-.+.+++ +++..||++||+.
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00 001111 112223344444 4789999999974
No 230
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.85 E-value=0.031 Score=47.71 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 231
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.84 E-value=0.016 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...|.|+|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999976
No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.84 E-value=0.024 Score=53.92 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455556654445678999999999999999988864
No 233
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.83 E-value=0.012 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 234
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.83 E-value=0.014 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 235
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.81 E-value=0.017 Score=51.68 Aligned_cols=24 Identities=4% Similarity=0.079 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 236
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.81 E-value=0.044 Score=52.51 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeE-EEEeCCCCCHHHHHHHHHHHhCCCCC-Ccc-ccCcCHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLA-WVRVSIAYDFGKMLDDIIKSVMPPSR-VSV-IIGEDYQLKKSIL 285 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~i~~~i~~~l~~~~~-~~~-~~~~~~~~~~~~l 285 (394)
-.+++|+|+.|+||||+++.+.. .+.......+ ++.-.-.+. +..... ..+ .++.+...+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e~~-----------~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYV-----------FKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCCSC-----------CCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHhhh-----------hccCceEEEeeecCCCHHHHHHHH
Confidence 46899999999999999998876 2221112223 332111100 000000 000 0000111224456
Q ss_pred HHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHh
Q 016120 286 RDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLA 335 (394)
Q Consensus 286 ~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~ 335 (394)
...|...+=+|++|.+.+ .+......... ..|..|+.|+...++..
T Consensus 203 ~~~L~~~pd~illdE~~d-~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp HHHTTSCCSEEEESCCCS-HHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred HHHhhhCcCEEEECCCCC-HHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 667766777899999987 65444433332 34666888887655433
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.81 E-value=0.015 Score=50.55 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-++++|+|+.|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 46889999999999999999986
No 238
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.80 E-value=0.016 Score=50.40 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 239
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.79 E-value=0.015 Score=49.24 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 240
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.74 E-value=0.16 Score=46.95 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988875
No 241
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.73 E-value=0.066 Score=53.91 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=42.8
Q ss_pred HHHHHHhCCCCCCccccCc-CHH-HHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChH
Q 016120 258 DDIIKSVMPPSRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPD 332 (394)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~-~~~-~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~ 332 (394)
.++++.++........... +.. ...-.+...|..++=+|+||.--+ +...-..+...+.. ...|..||++|.+..
T Consensus 140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4566666654332223333 322 223344555666778999999876 44322222222211 013666888888877
Q ss_pred HHhhc
Q 016120 333 LLASL 337 (394)
Q Consensus 333 v~~~~ 337 (394)
.+..+
T Consensus 220 ~~~~~ 224 (538)
T 1yqt_A 220 VLDYL 224 (538)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66655
No 242
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.70 E-value=0.2 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..++|+|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999864
No 243
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.70 E-value=0.016 Score=50.23 Aligned_cols=23 Identities=4% Similarity=-0.153 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 244
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.69 E-value=0.019 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 245
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.68 E-value=0.0092 Score=51.94 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 246
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.65 E-value=0.017 Score=50.72 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999977
No 247
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.65 E-value=0.021 Score=49.85 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=27.5
Q ss_pred ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 193 RGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 193 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+..+.+...+.. ....+++|+|.+|+|||||+..+...
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444444432 24789999999999999999988763
No 248
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.63 E-value=0.016 Score=51.17 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 249
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.63 E-value=0.02 Score=50.61 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhc
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 250
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.61 E-value=0.018 Score=49.72 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999976
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.61 E-value=0.017 Score=50.99 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 252
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.59 E-value=0.02 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 253
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.57 E-value=0.12 Score=48.62 Aligned_cols=91 Identities=9% Similarity=-0.075 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------------------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------------------ 270 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------------------ 270 (394)
-.++.|.|.+|+||||||..++.+... +=..++|++. ..+...+...++.....-...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Confidence 358889999999999999988764222 1234556654 455666666665432211000
Q ss_pred ----------ccccCc-CHHHHHHHHHHHccC--CeEEEEEeCCCC
Q 016120 271 ----------SVIIGE-DYQLKKSILRDYLTN--KKYFIVLDDVFD 303 (394)
Q Consensus 271 ----------~~~~~~-~~~~~~~~l~~~l~~--kr~LlVlDdv~~ 303 (394)
..+... +..++...++...+. +.-+||+|-+..
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLql 167 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQL 167 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHH
Confidence 011122 566666666665432 467888887654
No 254
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.52 E-value=0.013 Score=49.62 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 255
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.51 E-value=0.02 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|++|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999998874
No 256
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.50 E-value=0.017 Score=50.87 Aligned_cols=23 Identities=13% Similarity=-0.119 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 257
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.50 E-value=0.021 Score=49.24 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 258
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.49 E-value=0.019 Score=50.15 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 259
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.48 E-value=0.04 Score=51.63 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 260
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.46 E-value=0.021 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+|+|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999976
No 261
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.45 E-value=0.02 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35889999999999999998873
No 262
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.45 E-value=0.024 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 263
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.41 E-value=0.023 Score=49.52 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999976
No 264
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.36 E-value=0.021 Score=49.89 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 265
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.31 E-value=0.17 Score=51.60 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=42.7
Q ss_pred HHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChH
Q 016120 258 DDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPD 332 (394)
Q Consensus 258 ~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~ 332 (394)
.++++.++........... +..+. .-.+...|..++=+|+||.--. +...-..+...+..- ..|..||++|.+..
T Consensus 210 ~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 4566666654322222333 33222 2344455566777999999876 333222222222110 13667999999887
Q ss_pred HHhhc
Q 016120 333 LLASL 337 (394)
Q Consensus 333 v~~~~ 337 (394)
.+..+
T Consensus 290 ~~~~~ 294 (607)
T 3bk7_A 290 VLDYL 294 (607)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 76655
No 266
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.30 E-value=0.015 Score=51.56 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=15.8
Q ss_pred eEEEEEcCCCccHHHHHHHHh
Q 016120 210 AVVAILDSSGFDKTVFTADTY 230 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~ 230 (394)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 267
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.25 E-value=0.032 Score=54.66 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=34.3
Q ss_pred ccceecccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG------------PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|.++.+..+...+... +...+-+.++|++|+||||+|+.+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 6788888888887666321 11235578999999999999999987
No 268
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.22 E-value=0.021 Score=49.28 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|+|+.|+|||||++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998876
No 269
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.21 E-value=0.16 Score=44.98 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=55.0
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC-ccccccc-CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN-DHVKFYF-DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS 271 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 271 (394)
..++++..+..+ ..+.|+|..|+||||+...+.-+ ....... .+.+.+..........+...+....+......
T Consensus 65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 445566666553 47889999999999866544322 1111112 22333333333333444455554444321110
Q ss_pred ---------------cccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120 272 ---------------VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD 303 (394)
Q Consensus 272 ---------------~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~ 303 (394)
.++-- +...+...+...+.+- -+||+|.+..
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 01112 5666666666544433 4789999976
No 270
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.19 E-value=0.028 Score=52.31 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 271
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.16 E-value=0.19 Score=51.14 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999965
No 272
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.15 E-value=0.025 Score=48.85 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 273
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.15 E-value=0.16 Score=48.64 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-++++.|..-..+ ..++|+|.+|+|||+|++.+.+
T Consensus 163 iraID~l~PigrG-QR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIGKG-QRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCBTT-CEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhcccccCC-ceEEEecCCCCChhHHHHHHHH
Confidence 3566777654323 3568999999999999998887
No 274
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.12 E-value=0.02 Score=51.75 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 275
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.10 E-value=0.022 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999999875
No 276
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.09 E-value=0.088 Score=53.42 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.8
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++.|.|.+|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999988876
No 277
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.07 E-value=0.03 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++|+|+.|+||||+++.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999998865
No 278
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.05 E-value=0.039 Score=46.57 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=25.2
Q ss_pred HHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 199 FDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 199 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+..+...+.....|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 3334333234567889999999999999999874
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.99 E-value=0.13 Score=47.90 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS 263 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 263 (394)
-.++.|.|.+|+||||||..++.+...+. ..++|++.. .+...+...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 45888999999999999988876422222 567777654 4566666666544
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.97 E-value=0.029 Score=47.69 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 281
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.94 E-value=0.41 Score=47.54 Aligned_cols=92 Identities=12% Similarity=-0.024 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------------------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------------------ 270 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------------------ 270 (394)
-.++.|.|.+|+||||||..+..+...+ +=..++|++. ..+..++...++.........
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~--E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 318 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML--EESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW 318 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES--SSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec--cCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHH
Confidence 4578899999999999998887642222 1134667655 334566666654432211100
Q ss_pred ---------c---cccCc-CHHHHHHHHHHHcc-CCeEEEEEeCCCC
Q 016120 271 ---------S---VIIGE-DYQLKKSILRDYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 271 ---------~---~~~~~-~~~~~~~~l~~~l~-~kr~LlVlDdv~~ 303 (394)
. ..... +..++...+....+ .+.-+||+|.+..
T Consensus 319 ~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~ 365 (503)
T 1q57_A 319 FDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 365 (503)
T ss_dssp HHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence 0 00112 56666666666543 2445899998865
No 282
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.93 E-value=0.053 Score=53.67 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|.+|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 456999999999999999998876
No 283
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.92 E-value=0.088 Score=59.57 Aligned_cols=89 Identities=15% Similarity=-0.008 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILR 286 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~ 286 (394)
.-.++.|.|.+|+||||||.++... ....=..++|++....++... ++.++.......-.+. +.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 3468889999999999999888763 222234678998887777542 5556543221111122 5566666666
Q ss_pred HHc-cCCeEEEEEeCCCC
Q 016120 287 DYL-TNKKYFIVLDDVFD 303 (394)
Q Consensus 287 ~~l-~~kr~LlVlDdv~~ 303 (394)
... +.+.-++|+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 554 34567999999976
No 284
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.91 E-value=0.029 Score=50.78 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999964
No 285
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.87 E-value=0.03 Score=48.93 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.85 E-value=0.031 Score=50.36 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 287
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.85 E-value=0.03 Score=47.42 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 288
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.83 E-value=0.21 Score=53.64 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=36.5
Q ss_pred HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceee
Q 016120 284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
.+...|-.++-+||||.--+ +......+...+... |..||++|.+.+..... ..+++.
T Consensus 911 aLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l----~DrViv 970 (986)
T 2iw3_A 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNL----TEEVWA 970 (986)
T ss_dssp HHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTT----CCEEEC
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHh----CCEEEE
Confidence 34445667788999999766 444445555555433 23588888887776655 345555
No 289
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.83 E-value=0.031 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999999965
No 290
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.83 E-value=0.036 Score=49.78 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888999999999999999875
No 291
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.82 E-value=0.11 Score=59.60 Aligned_cols=107 Identities=16% Similarity=0.002 Sum_probs=65.2
Q ss_pred eecccHHHHHHHHh-cCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120 190 EFERGREELFDLLI-EGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS 268 (394)
Q Consensus 190 Gr~~~~~~i~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 268 (394)
+...-...|-..|. ..=+.-.++.|.|.+|+||||||.++... ....=..++|++....++... ++.++...
T Consensus 363 ~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~ 435 (2050)
T 3cmu_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDI 435 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCT
T ss_pred eeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCH
Confidence 33334444444443 12123468899999999999999998873 322224678888877776542 55555432
Q ss_pred CCccccCc-CHHHHHHHHHHHc-cCCeEEEEEeCCCC
Q 016120 269 RVSVIIGE-DYQLKKSILRDYL-TNKKYFIVLDDVFD 303 (394)
Q Consensus 269 ~~~~~~~~-~~~~~~~~l~~~l-~~kr~LlVlDdv~~ 303 (394)
....-.+. +.+++...+.... +.+.-+||+|-+..
T Consensus 436 ~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 436 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred HHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 21101122 6667777666555 34567999999865
No 292
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.80 E-value=0.031 Score=49.02 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999976
No 293
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.80 E-value=0.35 Score=46.32 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=30.2
Q ss_pred ccceecccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|....+.++.+.+..- ..... +.|.|.+|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHH
Confidence 4556555666666555432 22344 47999999999999999986
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.79 E-value=0.034 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999964
No 295
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.79 E-value=0.031 Score=49.27 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.79 E-value=0.036 Score=56.70 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=35.2
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+++|.+..++.+...+..+ ..+.|+|++|+||||||+.+..
T Consensus 42 ~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 8899988888877777654 4778999999999999999987
No 297
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.78 E-value=0.033 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 298
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.77 E-value=0.041 Score=45.61 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..++|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 299
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.75 E-value=0.033 Score=52.55 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 300
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.69 E-value=0.034 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 301
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.69 E-value=0.08 Score=45.79 Aligned_cols=50 Identities=10% Similarity=-0.011 Sum_probs=30.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
.|+|-|.-|+||||.++.+++ ..+..-..+++..-............++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 467889999999999999987 34333223344433333334444555543
No 302
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.68 E-value=0.037 Score=49.10 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 303
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.68 E-value=0.047 Score=47.62 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+..+..++.. -+....+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4455555543 22334688999999999999988887
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.67 E-value=0.034 Score=50.43 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 305
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.61 E-value=0.036 Score=51.07 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999986
No 306
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.58 E-value=0.32 Score=47.56 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
-.++.|.|.+|+||||+|..++.+...+ =..++|++.. .+...+...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHH
Confidence 4588899999999999998887642222 1245666543 334444444443
No 307
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.58 E-value=0.074 Score=47.16 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.-..|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999873
No 308
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.57 E-value=0.24 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..++|+|+.|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998865
No 309
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.51 E-value=0.043 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 356999999999999999998875
No 310
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.51 E-value=0.037 Score=50.77 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4889999999999999999975
No 311
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.47 E-value=0.06 Score=52.60 Aligned_cols=102 Identities=12% Similarity=0.202 Sum_probs=55.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccC----eeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc-
Q 016120 198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD----CLAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS- 271 (394)
Q Consensus 198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~- 271 (394)
.++.|..-..+- .++|.|..|+|||+|+..+.+. ...+-+ .++++-+++... +.++..++...-......-
T Consensus 141 aID~l~pigrGQ-r~~Ifgg~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV 217 (465)
T 3vr4_D 141 AIDHLNTLVRGQ-KLPVFSGSGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMF 217 (465)
T ss_dssp HHHTTSCCBTTC-BCCEEECTTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEE
T ss_pred EEecccccccCC-EEEEeCCCCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEE
Confidence 455554432223 3578999999999999999884 332223 566776666543 4455555443210000000
Q ss_pred -cccCc-C-----HHHHHHHHHHHcc---CCeEEEEEeCCC
Q 016120 272 -VIIGE-D-----YQLKKSILRDYLT---NKKYFIVLDDVF 302 (394)
Q Consensus 272 -~~~~~-~-----~~~~~~~l~~~l~---~kr~LlVlDdv~ 302 (394)
...+. . .....-.+.++++ ++..||++||+.
T Consensus 218 ~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 218 MNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 00111 1 1122234555553 789999999974
No 312
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.47 E-value=0.1 Score=55.95 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=30.3
Q ss_pred cCCeEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 290 TNKKYFIVLDDVFD--NSEIWSDL----EELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 290 ~~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
..++-|++||..-. ++..-..+ ...+.. ..|+.||++|.+.+++..+
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA 791 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence 46778999999976 33322222 223321 2478899999998877654
No 313
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.45 E-value=0.023 Score=52.51 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=18.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 314
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.45 E-value=0.036 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999864
No 315
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.45 E-value=0.046 Score=51.44 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 316
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.43 E-value=0.064 Score=51.39 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++.+.-.-+...+++|+|++|+|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433333456899999999999999999986
No 317
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.35 E-value=0.052 Score=45.73 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 318
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.34 E-value=0.048 Score=44.49 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+.|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998764
No 319
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.33 E-value=0.046 Score=49.61 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe-CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV-SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 287 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 287 (394)
-.+++|+|+.|+|||||.+.+.. .+...+...+++.- .-.+-.... ..+ +. + ..+..+...+...+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~---v~-q----~~~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSI---VN-Q----REVGEDTKSFADALRA 93 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSE---EE-E----EEBTTTBSCHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-cee---ee-H----HHhCCCHHHHHHHHHH
Confidence 46899999999999999998876 22211233333311 100000000 000 00 0 0000011122445555
Q ss_pred HccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhh
Q 016120 288 YLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLAS 336 (394)
Q Consensus 288 ~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~ 336 (394)
.|..++=+|++|...+ .+....+.... ..|.-|++||.+.++...
T Consensus 94 aL~~~p~illlDEp~D-~~~~~~~l~~~---~~g~~vl~t~H~~~~~~~ 138 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAIDT 138 (261)
T ss_dssp HHHHCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEECCSSHHHH
T ss_pred HHhhCCCEEEeCCCCC-HHHHHHHHHHH---ccCCEEEEEeCcchHHHH
Confidence 6655666888899876 54444433322 246678888887665443
No 320
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.33 E-value=0.043 Score=51.40 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 321
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.28 E-value=0.059 Score=47.65 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------c---c-------
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------S---V------- 272 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~---~------- 272 (394)
-.++.|.|.+|+||||||..++.. ....=..++|++... ....+...+ ..++..... - .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 358899999999999999877652 111123566776443 344443333 233221100 0 0
Q ss_pred ---------ccCc-CHHHHHHHHHHHcc-CCeEEEEEeCCCC----CchhHH----HHHhhCCCCCCCcEEEEecCCh
Q 016120 273 ---------IIGE-DYQLKKSILRDYLT-NKKYFIVLDDVFD----NSEIWS----DLEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 273 ---------~~~~-~~~~~~~~l~~~l~-~kr~LlVlDdv~~----~~~~~~----~l~~~l~~~~~gs~IivTTR~~ 331 (394)
.... +...+...+.+.++ .+.-++|+|.+.. +..... .+...+ ...|..||+|+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~--~~~~~~vi~~~h~~ 173 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVL--AGTGCTSIFVSQVS 173 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH--HHTTCEEEEEEECC
T ss_pred cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence 0011 45555666666653 2445899999865 121222 222222 13466777776643
No 322
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.28 E-value=0.043 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.-.+|+|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999987
No 323
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.28 E-value=0.53 Score=44.44 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+...++++|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4668999999999999999999874
No 324
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.26 E-value=0.49 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..++|||..|+|||||++.+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35789999999999999999975
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.22 E-value=0.045 Score=50.87 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345889999999999999998864
No 326
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.15 E-value=0.046 Score=44.55 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 327
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.14 E-value=0.077 Score=44.09 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 328
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.14 E-value=0.053 Score=50.13 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhc
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999988765
No 329
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.10 E-value=0.046 Score=49.88 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35889999999999999998875
No 330
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.10 E-value=0.052 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|+|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 331
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.07 E-value=0.055 Score=48.01 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 332
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.07 E-value=0.05 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35889999999999999999976
No 333
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.01 E-value=0.041 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999965
No 334
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.01 E-value=0.051 Score=44.99 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999998764
No 335
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.99 E-value=0.05 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-.+++|+|.+|+|||||++.+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358899999999999999988763
No 336
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.98 E-value=0.052 Score=49.54 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999875
No 337
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.92 E-value=0.1 Score=47.44 Aligned_cols=36 Identities=6% Similarity=-0.008 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.-+..||....+...-+.++|++|+|||.+|..+.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 335556655423345688999999999999999987
No 338
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.91 E-value=0.05 Score=44.63 Aligned_cols=24 Identities=4% Similarity=0.113 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 339
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.89 E-value=0.047 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 467999999999999999999976
No 340
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.88 E-value=0.15 Score=50.33 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcCcccccccCe-eEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNNDHVKFYFDC-LAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS-- 271 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~-- 271 (394)
+.++.|..-..+ ..++|.|.+|+|||+|| ..+.+. . +-+. ++++-+++... +.++..++...-......-
T Consensus 151 raID~l~PigrG-QR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIGRG-QRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCBTT-CBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccccC-CEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 345555543322 35679999999999996 567663 2 2343 46777777654 4445555544221111100
Q ss_pred cccCc-CHHH-----HHHHHHHHc--cCCeEEEEEeCCC
Q 016120 272 VIIGE-DYQL-----KKSILRDYL--TNKKYFIVLDDVF 302 (394)
Q Consensus 272 ~~~~~-~~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 302 (394)
...++ .... ....+.+++ +|+..||++||+.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 01111 1111 123344554 5799999999974
No 341
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.88 E-value=0.099 Score=49.28 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++.+...-....+++|+|.+|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444443334567999999999999999999874
No 342
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.85 E-value=0.061 Score=49.72 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+++++|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 343
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.82 E-value=0.099 Score=49.30 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+.+.+.....+..+++|+|.+|+|||||+..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444433334578999999999999999988864
No 344
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.81 E-value=0.091 Score=51.98 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcCcccccccCe-eEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNNDHVKFYFDC-LAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS-- 271 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~-- 271 (394)
+.++.|..-..+ ..++|.|.+|+|||+|| ..+.+. . .-+. ++++-+++... +.++..++...-......-
T Consensus 164 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIGRG-QRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEETT-CBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccccC-CEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 345666543222 35679999999999996 577763 2 2443 46777777654 4444445443211100000
Q ss_pred cccCc-CH-----HHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120 272 VIIGE-DY-----QLKKSILRDYL--TNKKYFIVLDDVFD 303 (394)
Q Consensus 272 ~~~~~-~~-----~~~~~~l~~~l--~~kr~LlVlDdv~~ 303 (394)
...++ .. ......+.+++ +|+..||++||+..
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 00111 11 11122344554 57999999999743
No 345
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.75 E-value=0.064 Score=47.74 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|+|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 346
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.74 E-value=0.054 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 347
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.73 E-value=0.06 Score=44.04 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+++|.+|+|||||...+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998764
No 348
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.065 Score=45.39 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|+|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557889999999999999998874
No 349
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.72 E-value=0.056 Score=44.40 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-|+++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998753
No 350
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.71 E-value=0.06 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999853
No 351
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.70 E-value=0.092 Score=45.00 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=24.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+++.+.-.. ....|+++|.+|+|||||...+.++
T Consensus 15 ~l~~~~~~~-~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTT-CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccC-CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 445553322 3346789999999999999998763
No 352
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.69 E-value=0.1 Score=52.03 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988874
No 353
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.65 E-value=0.063 Score=49.88 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 356889999999999999999986
No 354
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.64 E-value=0.062 Score=44.20 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
--|.++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 355
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.62 E-value=0.19 Score=56.99 Aligned_cols=89 Identities=15% Similarity=-0.006 Sum_probs=64.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccc-CcCHHHHHHHHH
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVII-GEDYQLKKSILR 286 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~-~~~~~~~~~~l~ 286 (394)
+-++|-|+|+.|+||||||.++.. +.+..=..++|+.+.+.+++.. ++.++.....---. +++.++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 346899999999999999999887 4555556788999888888764 77777654321001 114566666777
Q ss_pred HHcc-CCeEEEEEeCCCC
Q 016120 287 DYLT-NKKYFIVLDDVFD 303 (394)
Q Consensus 287 ~~l~-~kr~LlVlDdv~~ 303 (394)
..++ +..-++|+|-|-.
T Consensus 1503 ~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHcCCCCEEEEccHHh
Confidence 7764 5677999999854
No 356
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.61 E-value=0.11 Score=46.77 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+.++.+.+.........|+++|.+|+|||||...+...
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33445555554445667899999999999999998864
No 357
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.58 E-value=0.067 Score=48.26 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788889999999999988876
No 358
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.58 E-value=0.064 Score=44.89 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
No 359
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.56 E-value=0.078 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|+++|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999988764
No 360
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.53 E-value=0.49 Score=40.66 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998864
No 361
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.50 E-value=0.13 Score=46.55 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.+++..+...+.....|.++|.+|+|||||...+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3344445444444668889999999999999998864
No 362
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.50 E-value=0.083 Score=43.44 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.2
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999864
No 363
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.49 E-value=0.074 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 36788899999999999988875
No 364
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.48 E-value=0.18 Score=44.20 Aligned_cols=23 Identities=13% Similarity=-0.007 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..|.|.|+.|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 365
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.47 E-value=0.063 Score=43.98 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 366
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.45 E-value=0.068 Score=43.83 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 367
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.44 E-value=0.27 Score=48.48 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcCcccccccC-eeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNNDHVKFYFD-CLAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS-- 271 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~-- 271 (394)
+.++.|..-..+ ..++|.|..|+|||+|| ..+.|. . +-+ .++++-+++... +.++..++...-......-
T Consensus 151 kaID~l~PigrG-QR~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ 225 (513)
T 3oaa_A 151 KAVDSMIPIGRG-QRELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV 225 (513)
T ss_dssp HHHHHHSCCBTT-CBCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred eeeccccccccC-CEEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence 345666543322 35579999999999996 566662 2 233 357888887654 4445555443211111000
Q ss_pred cccCc-CH-----HHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120 272 VIIGE-DY-----QLKKSILRDYL--TNKKYFIVLDDVFD 303 (394)
Q Consensus 272 ~~~~~-~~-----~~~~~~l~~~l--~~kr~LlVlDdv~~ 303 (394)
...++ .. ......+.+++ +|+..||++||+..
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 226 ATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred ECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 00111 11 11122334444 58999999999753
No 368
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.44 E-value=0.077 Score=44.95 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+...|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 369
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.42 E-value=0.084 Score=44.51 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999999875
No 370
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.42 E-value=0.11 Score=51.37 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=47.5
Q ss_pred EEEEEcCCCccHHHHH-HHHhcCcccccccC-eeEEEEeCCCCC-HHHHHHHHHHHhCC--------CCCCccccCcCHH
Q 016120 211 VVAILDSSGFDKTVFT-ADTYNNDHVKFYFD-CLAWVRVSIAYD-FGKMLDDIIKSVMP--------PSRVSVIIGEDYQ 279 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~--------~~~~~~~~~~~~~ 279 (394)
.++|.|.+|+|||+|| ..+.+. .. -+ .++++-+++... +.++..++...-.. ....+.....-..
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 5679999999999996 577773 22 34 346777777654 33333333321000 0000000000112
Q ss_pred HHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120 280 LKKSILRDYL--TNKKYFIVLDDVFD 303 (394)
Q Consensus 280 ~~~~~l~~~l--~~kr~LlVlDdv~~ 303 (394)
.....+.+++ +|+..||++||+..
T Consensus 241 ~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 241 YTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 2233334444 58999999999754
No 371
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.42 E-value=0.2 Score=53.50 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=30.2
Q ss_pred cCCeEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 290 TNKKYFIVLDDVFD--NSEIWSDL----EELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 290 ~~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
..++-|++||..-. ++..-..+ ...+. ...|+.||++|.+.+++...
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~-~~~g~tvl~vTH~~el~~l~ 802 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFVTHYPPVCELE 802 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH-HTTCCEEEEECSCGGGGGHH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-HhcCCeEEEEeCcHHHHHHH
Confidence 46788999999977 33322222 22221 13478999999998776654
No 372
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.39 E-value=0.17 Score=44.69 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=55.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----ccccCc-CHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-----SVIIGE-DYQLKKS 283 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~~~~~~-~~~~~~~ 283 (394)
-.|.+.|.||+||||+|..+.... ....++. ..+.+....+... ...+..+...... ...... +....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~V-~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVRV-MAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTCCE-EEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCCCE-EEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH--
Confidence 346788999999999998887632 1223443 3444443323221 1122222211100 000111 32222
Q ss_pred HHHHHccCCeEEEEEeCCCC-------CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120 284 ILRDYLTNKKYFIVLDDVFD-------NSEIWSDLEELLPDDENGSRVLITVTDP 331 (394)
Q Consensus 284 ~l~~~l~~kr~LlVlDdv~~-------~~~~~~~l~~~l~~~~~gs~IivTTR~~ 331 (394)
+. .+.=++|+|++-. ....|.++...++ .|..|+.|+.-+
T Consensus 81 -L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 -LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp -HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred -Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 22 2456899998764 2346788776553 355688887744
No 373
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.38 E-value=0.07 Score=43.83 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
--|.++|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998764
No 374
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.36 E-value=0.068 Score=45.04 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.35 E-value=0.077 Score=46.01 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|.++|.+|+|||||...+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998874
No 376
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.35 E-value=0.066 Score=43.72 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
--|+++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888754
No 377
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.33 E-value=0.075 Score=44.81 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+.+|+|..|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999998864
No 378
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.30 E-value=0.38 Score=45.75 Aligned_cols=46 Identities=17% Similarity=0.026 Sum_probs=30.4
Q ss_pred ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.++|....+.++.+.+..-......+.|.|.+|+||+++|+.++..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHh
Confidence 5667666665555544321112233568999999999999999863
No 379
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.28 E-value=0.096 Score=43.48 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999998764
No 380
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.26 E-value=0.056 Score=48.85 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+...|+|.|..|+||||+|+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998887
No 381
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.26 E-value=0.067 Score=45.19 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..-|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34678999999999999987765
No 382
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.23 E-value=0.072 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 383
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.22 E-value=0.092 Score=43.65 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999988764
No 384
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.22 E-value=0.072 Score=45.11 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999877654
No 385
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.20 E-value=0.071 Score=43.62 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 016120 212 VAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~ 232 (394)
|+++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988653
No 386
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.19 E-value=0.087 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4557889999999999999999764
No 387
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.12 E-value=0.075 Score=44.68 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-|+|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998875
No 388
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.05 E-value=0.08 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 389
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.04 E-value=0.088 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+.|.|+.|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999976
No 390
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.00 E-value=0.13 Score=47.70 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=25.9
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHh
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTY 230 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 230 (394)
.++++.+.+.. .+++++|+.|+|||||.+.+.
T Consensus 155 gi~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 35666666642 478999999999999999998
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.99 E-value=0.059 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.001 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-..++|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988764
No 392
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.98 E-value=0.068 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
....|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 356788999999999999999853
No 393
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.97 E-value=0.079 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456789999999999999888764
No 394
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.97 E-value=0.078 Score=43.47 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.-|+++|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999988754
No 395
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.94 E-value=0.085 Score=43.74 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998764
No 396
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.91 E-value=0.44 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|.|||||.+.+..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHh
Confidence 5899999999999999988753
No 397
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.87 E-value=0.55 Score=48.45 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHccCCe--EEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120 285 LRDYLTNKK--YFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 285 l~~~l~~kr--~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~ 337 (394)
+...|..++ -+|+||.--. +...-..+...+.. ...|..||++|.+.+++..+
T Consensus 213 iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~ 270 (670)
T 3ux8_A 213 LATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAA 270 (670)
T ss_dssp HHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHC
T ss_pred HHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhC
Confidence 334444443 4999999776 44333333332221 12366799999998876654
No 398
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.87 E-value=0.1 Score=43.70 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457789999999999999998864
No 399
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.86 E-value=0.066 Score=44.60 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999988764
No 400
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.85 E-value=0.11 Score=42.62 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|.++|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999754
No 401
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.85 E-value=0.087 Score=44.17 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998764
No 402
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.84 E-value=0.08 Score=45.01 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|+++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998864
No 403
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.82 E-value=0.087 Score=44.15 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999764
No 404
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.80 E-value=0.14 Score=42.52 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988764
No 405
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.77 E-value=0.089 Score=44.88 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.++|.+|+|||+|.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 446789999999999999977763
No 406
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.77 E-value=0.091 Score=43.55 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.-|+|+|..|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999998754
No 407
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.74 E-value=0.11 Score=42.51 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.-|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999988764
No 408
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.73 E-value=0.089 Score=43.96 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=19.8
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
--|+++|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999888754
No 409
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.72 E-value=0.024 Score=61.46 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=30.8
Q ss_pred ccCCeEEEEEeCCCC--Cch-----hHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 289 LTNKKYFIVLDDVFD--NSE-----IWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 289 l~~kr~LlVlDdv~~--~~~-----~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
+..++-|++||..-. +.. .|.-+. .+.. ..|+.+|++|.+...+...
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~-~L~~-~~g~~vl~~TH~~el~~~~ 918 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVK-ELAE-TIKCRTLFSTHYHSLVEDY 918 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHH-HHHH-TSCCEEEEECCCHHHHHHT
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHH-HHHh-cCCCEEEEEeCCHHHHHHh
Confidence 356788999999966 222 133232 2321 2378999999998887765
No 410
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.72 E-value=0.11 Score=43.45 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999998754
No 411
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.69 E-value=0.089 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 35889999999999999999975
No 412
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.68 E-value=0.094 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998764
No 413
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.67 E-value=0.098 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|+|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999998876
No 414
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=91.67 E-value=0.55 Score=49.66 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHccC---CeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhchhcCCCceee
Q 016120 285 LRDYLTN---KKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASLEMENGEKIRR 347 (394)
Q Consensus 285 l~~~l~~---kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~~~~ 347 (394)
|...|.. .+-++|||.--. +......+...+... ..|..||++|.+.++.. . .++++.
T Consensus 741 LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~-~----aDrii~ 804 (842)
T 2vf7_A 741 LATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVA-A----SDWVLD 804 (842)
T ss_dssp HHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T----CSEEEE
T ss_pred HHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h----CCEEEE
Confidence 3444544 368999999776 444444444333221 24667999999988774 3 366766
No 415
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.63 E-value=0.096 Score=43.65 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 416
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.63 E-value=0.088 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457789999999999999999864
No 417
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.62 E-value=0.076 Score=46.26 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 418
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.62 E-value=0.12 Score=43.86 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|.|+|.+|+|||||...+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4668899999999999999999875
No 419
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.60 E-value=0.13 Score=50.29 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccc--------cccC-eeEEEEeCCCCC-HHHHHHHHHHHhCCC
Q 016120 198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK--------FYFD-CLAWVRVSIAYD-FGKMLDDIIKSVMPP 267 (394)
Q Consensus 198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~ 267 (394)
.++.|..-..+ ..++|.|.+|+|||+|+..+.+..... ++=+ .++++-+++... ..++..++... +.-
T Consensus 137 aID~l~pigrG-Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~-g~~ 214 (464)
T 3gqb_B 137 TIDVMNTLVRG-QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT-GAL 214 (464)
T ss_dssp HHHTTSCCBTT-CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT-SGG
T ss_pred eeecccccccC-CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc-ccc
Confidence 44555443222 245788999999999999998743321 1111 556776666543 44444444331 100
Q ss_pred CCCc---cccCc-CH-----HHHHHHHHHHcc---CCeEEEEEeCCC
Q 016120 268 SRVS---VIIGE-DY-----QLKKSILRDYLT---NKKYFIVLDDVF 302 (394)
Q Consensus 268 ~~~~---~~~~~-~~-----~~~~~~l~~~l~---~kr~LlVlDdv~ 302 (394)
.... ...+. .. ....-.+.+++. ++..||++||+.
T Consensus 215 ~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 215 SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0000 00111 11 222334555553 789999999974
No 420
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.59 E-value=0.42 Score=42.38 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=54.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC---C--------CCCccccCc-CHH
Q 016120 212 VAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP---P--------SRVSVIIGE-DYQ 279 (394)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~---~--------~~~~~~~~~-~~~ 279 (394)
+.|+|..|.|||.+|..+... . . ..++++. .. ..+..++.+.+.. . .....++-- +.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 678999999999999877763 2 1 2234443 22 2333333333321 1 000001111 344
Q ss_pred HHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec
Q 016120 280 LKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV 328 (394)
Q Consensus 280 ~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT 328 (394)
.+..... .+.++--+||+|++.. ....+..+...++ ...++.+|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 4444333 3344456999999988 4456777776664 233455553
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.59 E-value=0.12 Score=44.25 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999998764
No 422
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.57 E-value=0.095 Score=44.71 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999988864
No 423
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.55 E-value=0.097 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999988754
No 424
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.54 E-value=0.13 Score=45.14 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999875
No 425
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.52 E-value=0.091 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457889999999999999988764
No 426
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.21 Score=41.99 Aligned_cols=25 Identities=20% Similarity=0.008 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999999854
No 427
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.50 E-value=0.1 Score=43.50 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999988764
No 428
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.48 E-value=0.11 Score=49.06 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 429
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.47 E-value=0.15 Score=47.13 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=26.9
Q ss_pred cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120 194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.++++.+.+.. .+++|+|++|+|||||.+.+..
T Consensus 159 gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcc
Confidence 46667766643 4789999999999999999986
No 430
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.47 E-value=0.13 Score=50.78 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcCccc----ccccC-eeEEEEeCCCCC-HHHHHHHHHHHhCCCCC
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNNDHV----KFYFD-CLAWVRVSIAYD-FGKMLDDIIKSVMPPSR 269 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~ 269 (394)
+.++.|..-..+ ..++|.|.+|+|||+|| ..+.|.... .++-+ .++++-+++... +.++..++...-.....
T Consensus 151 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIGRG-QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCBTT-CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeeccccccccC-CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 356666553322 34579999999999995 566663211 12234 467777777654 44444554432111000
Q ss_pred Cc--cccCc-CH-----HHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120 270 VS--VIIGE-DY-----QLKKSILRDYL--TNKKYFIVLDDVFD 303 (394)
Q Consensus 270 ~~--~~~~~-~~-----~~~~~~l~~~l--~~kr~LlVlDdv~~ 303 (394)
.- ...++ .. ......+.+++ +|+..||++||+..
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 00 00111 11 11122344454 57999999999753
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.1 Score=43.35 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+++|.+|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 432
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.38 E-value=0.083 Score=48.92 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999775
No 433
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.37 E-value=0.17 Score=44.85 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=17.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..|.|.|+.|+||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 434
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.36 E-value=0.14 Score=42.95 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcCc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNND 233 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 233 (394)
....|+++|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678899999999999999998653
No 435
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.34 E-value=0.11 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 436
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.30 E-value=0.1 Score=48.26 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999998764
No 437
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.28 E-value=0.16 Score=42.81 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|.|+|..|+|||||...+.++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457889999999999999998864
No 438
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.27 E-value=0.099 Score=44.48 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 439
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.27 E-value=0.099 Score=46.43 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34689999999999999999876
No 440
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.27 E-value=0.11 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 441
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.23 E-value=0.11 Score=45.02 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457789999999999999999764
No 442
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.23 E-value=0.17 Score=42.52 Aligned_cols=25 Identities=16% Similarity=-0.060 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|+++|.+|+|||||...+..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4556889999999999999999654
No 443
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.21 E-value=0.11 Score=44.19 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999754
No 444
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.18 E-value=0.12 Score=51.81 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.++|++|+||||+|+.+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999976
No 445
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.16 E-value=0.11 Score=43.39 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567789999999999999998753
No 446
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.16 E-value=0.11 Score=45.02 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+|+|.|+.|+||||+|+.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 447
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.16 E-value=0.11 Score=44.21 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988764
No 448
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.12 E-value=0.1 Score=44.58 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|+|+|.+|+|||||...+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3557889999999999999998864
No 449
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.11 E-value=0.1 Score=44.90 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457889999999999999988754
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.11 E-value=0.24 Score=44.15 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHH
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDII 261 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 261 (394)
...|.|.|+.|+||||+++.+..... ..++..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 45889999999999999999987322 22455344443322222334444444
No 451
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.09 E-value=0.12 Score=43.70 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998764
No 452
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.09 E-value=0.11 Score=44.05 Aligned_cols=24 Identities=13% Similarity=0.100 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999875
No 453
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.09 E-value=0.11 Score=44.07 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346789999999999999998764
No 454
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.08 E-value=0.12 Score=43.91 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|.++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998865
No 455
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.06 E-value=0.12 Score=44.60 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999998764
No 456
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.06 E-value=0.099 Score=52.71 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-.++.|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 46899999999999999999987
No 457
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.05 E-value=0.93 Score=50.44 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE------------------------------------eCCCCCHH
Q 016120 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR------------------------------------VSIAYDFG 254 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------------------------------------vs~~~~~~ 254 (394)
.++|+|+.|+|||||++.+.. .-......+.+. ...+.+..
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g---~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~ 494 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQR---LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD 494 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTT---SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHH
T ss_pred EEEEECCCCCCHHHHHHHHhC---CCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHH
Q ss_pred HHHHHHHHH----------------hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCC
Q 016120 255 KMLDDIIKS----------------VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLP 316 (394)
Q Consensus 255 ~i~~~i~~~----------------l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~ 316 (394)
++...+-.. ++.... .++....+....-+..+++.+ +|+||+.-. |...-..+...+.
T Consensus 495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~---~LSgGq~QriaiARal~~~p~-iliLDEpts~LD~~~~~~i~~~l~ 570 (1284)
T 3g5u_A 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGA---QLSGGQKQRIAIARALVRNPK-ILLLDEATSALDTESEAVVQAALD 570 (1284)
T ss_dssp HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSC---SSCHHHHHHHHHHHHHHHCCS-EEEEESTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhccccccccccCCCC---ccCHHHHHHHHHHHHHhcCCC-EEEEECCCCCCCHHHHHHHHHHHH
Q ss_pred CCCCCcEEEEecCChHHHhhchhcCCCceeeCCccCCC
Q 016120 317 DDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGG 354 (394)
Q Consensus 317 ~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~ 354 (394)
....|..+|+.|.+.+....+ ++++- |+
T Consensus 571 ~~~~~~t~i~itH~l~~i~~~-----d~i~v-----l~ 598 (1284)
T 3g5u_A 571 KAREGRTTIVIAHRLSTVRNA-----DVIAG-----FD 598 (1284)
T ss_dssp HHHTTSEEEEECSCHHHHTTC-----SEEEE-----CS
T ss_pred HHcCCCEEEEEecCHHHHHcC-----CEEEE-----EE
No 458
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.01 E-value=0.11 Score=51.84 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
+..+|.+.|++|+||||+|+.+..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHH
Confidence 456889999999999999999987
No 459
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.00 E-value=0.26 Score=43.12 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=32.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
..|.+.|..|+||||+++.+...... ..+..+.+..-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 47889999999999999999873222 23423343332223234455556654
No 460
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.00 E-value=0.12 Score=43.76 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 461
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.00 E-value=0.14 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 462
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.99 E-value=0.11 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358899999999999999999873
No 463
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.98 E-value=0.36 Score=48.25 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHH
Q 016120 197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFG 254 (394)
Q Consensus 197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 254 (394)
+.++.|..-. +=..++|.|..|+|||+|++.+.+. .+-+.++++-+++.....
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev 268 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEM 268 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHH
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHH
Confidence 4566665432 2246789999999999999998763 223577888888876643
No 464
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.96 E-value=0.11 Score=43.85 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999864
No 465
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.96 E-value=0.12 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 466
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.90 E-value=0.1 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..++|+|+.|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 467
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.87 E-value=0.15 Score=45.16 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999999874
No 468
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.86 E-value=0.12 Score=44.77 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|+|+|.+|+|||||...+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457889999999999999998764
No 469
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.86 E-value=0.13 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 470
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.83 E-value=0.16 Score=42.96 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456789999999999999998764
No 471
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.81 E-value=0.12 Score=43.91 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|..|+|||||...+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999864
No 472
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.80 E-value=0.13 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998754
No 473
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.79 E-value=0.13 Score=43.97 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999998764
No 474
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.79 E-value=0.91 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-..++|||+.|+|||||++.+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTT
T ss_pred CcEEEEEecCCCcHHHHHHHhcc
Confidence 45889999999999999999975
No 475
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.79 E-value=0.24 Score=43.72 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.7
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 016120 212 VAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 212 i~I~G~gGiGKTtLA~~v~~ 231 (394)
|+|.|-||+||||+|..+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 66789999999999988876
No 476
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.78 E-value=0.19 Score=43.69 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=30.5
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK 262 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 262 (394)
..|+|-|.-|+||||+++.+.. .....++++. ..-.........+.+++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v~~-~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDVIM-TREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCEEE-EESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCEEE-eeCCCCChHHHHHHHHHh
Confidence 4688999999999999999987 3334444432 222222233444445443
No 477
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.78 E-value=0.13 Score=44.97 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998874
No 478
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.77 E-value=0.15 Score=45.00 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=19.7
Q ss_pred CceEEEEEcC-CCccHHHHHHHHhc
Q 016120 208 GLAVVAILDS-SGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~-gGiGKTtLA~~v~~ 231 (394)
..++|+|++. ||+||||+|..+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 3578888864 99999999988876
No 479
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.73 E-value=0.14 Score=47.52 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120 207 SGLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 207 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999998764
No 480
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.68 E-value=0.13 Score=44.06 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998764
No 481
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.68 E-value=0.13 Score=46.24 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=26.6
Q ss_pred CceEEEEEc-CCCccHHHHHHHHhcCcccccccCeeEEEEeCCC
Q 016120 208 GLAVVAILD-SSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA 250 (394)
Q Consensus 208 ~~~vi~I~G-~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 250 (394)
..++|+|+| -||+||||+|..+..-.. + . ..+.-|.....
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~-g-~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-K-N-NKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-T-T-SCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-C-C-CCEEEEECCCC
Confidence 467888875 599999999988876333 2 2 33445555443
No 482
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.67 E-value=0.13 Score=45.17 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 016120 211 VVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4678999999999999888754
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.58 E-value=0.11 Score=43.79 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcCc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNND 233 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~~ 233 (394)
...|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998753
No 484
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.1 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHhc
Q 016120 210 AVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
.+++|+|+.|+|||||++.++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999876
No 485
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.51 E-value=0.12 Score=43.24 Aligned_cols=24 Identities=21% Similarity=0.022 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...|.|+|.+|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999764
No 486
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.50 E-value=0.14 Score=43.43 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.++|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347889999999999999999864
No 487
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.50 E-value=0.28 Score=42.53 Aligned_cols=39 Identities=8% Similarity=-0.021 Sum_probs=25.3
Q ss_pred EEEEE-cCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC
Q 016120 211 VVAIL-DSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD 252 (394)
Q Consensus 211 vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 252 (394)
+|+|+ +-||+||||+|..+..- ....- .+.-|......+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~--la~~g-~VlliD~D~q~~ 41 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY--LALQG-ETLLIDGDPNRS 41 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHTTS-CEEEEEECTTCH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH--HHhcC-CEEEEECCCCCC
Confidence 56675 56999999999888763 22222 455666555443
No 488
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.50 E-value=0.14 Score=50.45 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhc
Q 016120 209 LAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
..+|.++|++|+||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 489
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.46 E-value=0.16 Score=43.58 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.--|+++|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888754
No 490
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.46 E-value=0.14 Score=44.05 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999988764
No 491
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.44 E-value=0.12 Score=48.63 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=58.4
Q ss_pred eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120 210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 289 (394)
..++|+|+.|+|||||++.+..- +. .-...+.+.-....... .......-+..........+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~-----------~~~~~i~~~~ggg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFK-----------HHKNYTQLFFGGNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCS-----------SCSSEEEEECBTTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeeccccc-----------cchhEEEEEeCCChhHHHHHHHHh
Confidence 47899999999999999999872 21 12344444322211100 000000000000112334555667
Q ss_pred cCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120 290 TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337 (394)
Q Consensus 290 ~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 337 (394)
..++=+|++|.+.+ .+.++.+... ..+ +.-+|+||...+....+
T Consensus 238 ~~~p~ilildE~~~-~e~~~~l~~~-~~g--~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 238 RMRPDRIILGELRS-SEAYDFYNVL-CSG--HKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp TSCCSEEEECCCCS-THHHHHHHHH-HTT--CCCEEEEEECSSHHHHH
T ss_pred hhCCCEEEEcCCCh-HHHHHHHHHH-hcC--CCEEEEEEcccHHHHHh
Confidence 77788899999988 6666655433 222 22266666665544433
No 492
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.43 E-value=0.19 Score=43.55 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHhc
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~ 231 (394)
...+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988765
No 493
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.42 E-value=0.23 Score=42.48 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=25.1
Q ss_pred eEEEEE-cCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC
Q 016120 210 AVVAIL-DSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA 250 (394)
Q Consensus 210 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 250 (394)
++|+|+ +-||+||||+|..+... ....=..+.-+.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCC
Confidence 578888 56999999999888762 2222123455555433
No 494
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.39 E-value=0.14 Score=44.09 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 495
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.35 E-value=0.14 Score=43.80 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHhcC
Q 016120 208 GLAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 208 ~~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
...-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3457889999999999999998764
No 496
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.35 E-value=0.12 Score=50.84 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=54.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc--cCeeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--c
Q 016120 198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FDCLAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS--V 272 (394)
Q Consensus 198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~--~ 272 (394)
.++.|..-..+ ..++|.|.+|+|||+|+..+.++....+. =+.++++-+++... ..++..++...-......- .
T Consensus 142 ~ID~l~pigrG-Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRG-QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTT-CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccC-CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 45555443222 34567899999999999999874332111 13556666666543 4555555554311110000 0
Q ss_pred ccCc------CHHHHHHHHHHHc---cCCeEEEEEeCC
Q 016120 273 IIGE------DYQLKKSILRDYL---TNKKYFIVLDDV 301 (394)
Q Consensus 273 ~~~~------~~~~~~~~l~~~l---~~kr~LlVlDdv 301 (394)
..++ -.....-.+.+++ +++..||++||+
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0111 1122233344554 369999999996
No 497
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.32 E-value=0.079 Score=54.02 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 016120 211 VVAILDSSGFDKTVFTADTYN 231 (394)
Q Consensus 211 vi~I~G~gGiGKTtLA~~v~~ 231 (394)
-+.++|++|+|||+||+.+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 477999999999999999987
No 498
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.29 E-value=0.15 Score=48.46 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHhcC
Q 016120 210 AVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 210 ~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
.+++|+|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999873
No 499
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.28 E-value=0.15 Score=43.63 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998764
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.26 E-value=0.15 Score=43.78 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHhcC
Q 016120 209 LAVVAILDSSGFDKTVFTADTYNN 232 (394)
Q Consensus 209 ~~vi~I~G~gGiGKTtLA~~v~~~ 232 (394)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999988754
Done!