Query 016122
Match_columns 394
No_of_seqs 233 out of 1277
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 1.8E-79 4E-84 612.6 13.8 339 1-346 132-480 (503)
2 PRK00701 manganese transport p 100.0 3.6E-59 7.8E-64 479.4 34.3 297 2-306 138-437 (439)
3 TIGR01197 nramp NRAMP (natural 100.0 2.3E-55 5E-60 444.5 28.8 266 2-273 108-390 (390)
4 COG1914 MntH Mn2+ and Fe2+ tra 100.0 7.9E-53 1.7E-57 426.9 32.1 294 1-306 120-413 (416)
5 PF01566 Nramp: Natural resist 100.0 7.3E-51 1.6E-55 408.0 26.4 272 1-280 85-358 (358)
6 COG0733 Na+-dependent transpor 97.1 0.39 8.4E-06 49.9 25.9 157 26-201 160-328 (439)
7 COG1457 CodB Purine-cytosine p 97.1 0.48 1E-05 49.5 26.5 254 3-294 126-388 (442)
8 PF03222 Trp_Tyr_perm: Tryptop 97.0 0.26 5.5E-06 50.7 23.7 52 4-58 117-168 (394)
9 PF01235 Na_Ala_symp: Sodium:a 96.9 0.066 1.4E-06 55.4 18.1 180 3-208 135-338 (416)
10 PRK15132 tyrosine transporter 96.9 0.44 9.6E-06 49.2 23.7 53 4-59 117-169 (403)
11 TIGR00835 agcS amino acid carr 96.7 0.34 7.4E-06 50.3 21.4 181 3-211 162-368 (425)
12 PRK10483 tryptophan permease; 96.6 1.1 2.5E-05 46.4 24.0 50 4-56 124-173 (414)
13 TIGR00837 araaP aromatic amino 96.4 0.38 8.1E-06 48.5 19.6 73 163-236 253-326 (381)
14 PF00209 SNF: Sodium:neurotran 95.9 0.88 1.9E-05 48.3 19.7 174 26-210 196-380 (523)
15 PRK11375 allantoin permease; P 95.8 3 6.6E-05 44.0 27.6 86 176-266 308-395 (484)
16 TIGR00907 2A0304 amino acid pe 95.8 2.3 5E-05 44.4 22.2 40 165-204 291-331 (482)
17 TIGR00813 sss transporter, SSS 95.8 2.7 5.9E-05 42.9 23.4 44 166-209 284-328 (407)
18 COG1115 AlsT Na+/alanine sympo 95.6 2.9 6.3E-05 43.6 21.4 45 167-211 341-385 (452)
19 COG3949 Uncharacterized membra 95.6 1.1 2.4E-05 45.0 17.5 41 2-44 110-150 (349)
20 TIGR00905 2A0302 transporter, 95.3 4.3 9.3E-05 42.4 28.5 43 165-207 270-312 (473)
21 PRK09442 panF sodium/panthothe 94.5 7.5 0.00016 40.8 29.5 43 166-208 309-352 (483)
22 PRK15049 L-asparagine permease 94.4 7.8 0.00017 40.9 28.3 42 166-207 292-333 (499)
23 PRK15419 proline:sodium sympor 94.4 7.9 0.00017 40.9 28.9 61 167-227 316-381 (502)
24 PRK13629 threonine/serine tran 94.3 7.9 0.00017 40.6 22.7 52 5-59 136-187 (443)
25 PRK15433 branched-chain amino 94.1 8.9 0.00019 40.2 25.3 90 165-264 267-356 (439)
26 TIGR00796 livcs branched-chain 94.0 8.5 0.00018 39.5 22.7 94 163-265 255-348 (378)
27 PRK09664 tryptophan permease T 93.9 9.3 0.0002 39.7 26.5 226 4-251 123-355 (415)
28 TIGR00814 stp serine transport 93.6 9.1 0.0002 39.5 19.4 37 22-58 134-170 (397)
29 PF00474 SSF: Sodium:solute sy 93.6 3.8 8.3E-05 41.7 16.6 45 166-210 282-327 (406)
30 PRK11357 frlA putative fructos 93.3 11 0.00024 38.8 27.2 37 171-207 274-310 (445)
31 PF05525 Branch_AA_trans: Bran 93.1 13 0.00027 38.9 22.9 144 100-264 210-353 (427)
32 PF13520 AA_permease_2: Amino 93.0 11 0.00025 38.1 25.4 45 165-209 260-304 (426)
33 TIGR00930 2a30 K-Cl cotranspor 92.8 23 0.00049 40.9 27.2 32 177-208 386-417 (953)
34 PRK11387 S-methylmethionine tr 92.7 14 0.00031 38.4 30.3 44 164-207 276-319 (471)
35 TIGR02119 panF sodium/pantothe 92.3 16 0.00035 38.1 30.0 43 166-208 308-351 (471)
36 PRK12488 acetate permease; Pro 92.2 19 0.00041 38.7 27.1 28 2-31 175-202 (549)
37 TIGR02358 thia_cytX probable h 91.8 17 0.00036 37.2 24.0 74 183-264 251-324 (386)
38 PF02133 Transp_cyt_pur: Perme 91.0 3.4 7.3E-05 42.6 12.6 95 166-264 272-368 (440)
39 TIGR00910 2A0307_GadC glutamat 90.7 25 0.00055 37.2 30.9 31 175-205 280-310 (507)
40 TIGR00913 2A0310 amino acid pe 90.2 26 0.00056 36.5 29.8 33 175-207 287-319 (478)
41 PRK11021 putative transporter; 89.8 25 0.00054 35.8 27.6 43 165-207 248-290 (410)
42 TIGR00908 2A0305 ethanolamine 89.4 28 0.00061 35.8 27.0 45 164-208 261-307 (442)
43 PRK10484 putative transporter; 89.0 35 0.00075 36.3 30.2 45 165-209 316-361 (523)
44 TIGR02121 Na_Pro_sym sodium/pr 88.6 35 0.00076 35.9 28.9 43 167-209 309-352 (487)
45 COG1114 BrnQ Branched-chain am 87.6 39 0.00084 35.2 19.3 90 164-262 264-353 (431)
46 TIGR00909 2A0306 amino acid tr 87.5 36 0.00077 34.7 26.1 44 166-209 267-310 (429)
47 TIGR00911 2A0308 L-type amino 86.9 44 0.00094 35.1 30.8 38 169-207 310-347 (501)
48 TIGR03810 arg_ornith_anti argi 86.9 42 0.00092 34.9 28.7 43 165-207 266-308 (468)
49 PRK11017 codB cytosine permeas 86.7 41 0.00089 34.5 25.3 23 243-265 312-334 (404)
50 TIGR02711 symport_actP cation/ 86.4 51 0.0011 35.4 24.2 27 2-30 175-201 (549)
51 PRK10238 aromatic amino acid t 84.8 53 0.0011 34.1 25.2 42 167-208 273-314 (456)
52 PF00324 AA_permease: Amino ac 83.8 8.3 0.00018 40.1 10.4 36 167-202 278-313 (478)
53 PRK10836 lysine transporter; P 82.4 68 0.0015 33.6 27.3 41 167-207 286-326 (489)
54 KOG1289 Amino acid transporter 80.7 10 0.00023 40.5 9.6 135 163-301 325-476 (550)
55 TIGR00800 ncs1 NCS1 nucleoside 79.6 81 0.0017 32.7 20.4 69 192-264 311-379 (442)
56 PRK09395 actP acetate permease 79.4 94 0.002 33.3 28.1 28 2-31 177-204 (551)
57 PRK09509 fieF ferrous iron eff 77.5 32 0.0007 33.7 11.6 90 27-126 73-162 (299)
58 PRK10249 phenylalanine transpo 77.5 94 0.002 32.3 29.7 44 165-208 280-323 (458)
59 COG3949 Uncharacterized membra 77.1 81 0.0018 32.0 14.1 88 167-268 70-158 (349)
60 PRK10197 gamma-aminobutyrate t 76.8 97 0.0021 32.1 26.4 42 167-208 255-296 (446)
61 TIGR03428 ureacarb_perm permea 75.4 1.1E+02 0.0024 31.9 25.9 30 272-301 412-441 (475)
62 PRK03557 zinc transporter ZitB 74.8 42 0.00091 33.3 11.7 89 27-127 81-169 (312)
63 PRK10644 arginine:agmatin anti 70.8 1.3E+02 0.0029 30.9 29.0 37 165-201 262-298 (445)
64 TIGR00906 2A0303 cationic amin 69.2 1.7E+02 0.0037 31.5 28.0 41 167-207 303-343 (557)
65 TIGR01773 GABAperm gamma-amino 68.5 1.5E+02 0.0032 30.6 27.2 40 169-208 277-316 (452)
66 COG0591 PutP Na+/proline sympo 68.4 1.7E+02 0.0036 31.1 30.8 45 164-208 313-358 (493)
67 TIGR01297 CDF cation diffusion 67.5 1.1E+02 0.0025 28.9 13.8 18 27-44 52-69 (268)
68 TIGR03813 put_Glu_GABA_T putat 64.8 1.8E+02 0.0039 30.2 27.7 27 175-201 278-304 (474)
69 COG0053 MMT1 Predicted Co/Zn/C 62.8 95 0.0021 30.8 11.3 93 26-128 74-166 (304)
70 KOG1303 Amino acid transporter 59.5 2.3E+02 0.005 29.7 18.2 80 203-286 330-414 (437)
71 PRK10655 potE putrescine trans 58.7 2.2E+02 0.0047 29.1 30.1 41 165-205 260-300 (438)
72 COG1230 CzcD Co/Zn/Cd efflux s 55.7 85 0.0018 31.3 9.4 86 27-125 84-169 (296)
73 COG4147 DhlC Predicted symport 50.7 3.5E+02 0.0075 29.0 21.8 246 2-265 149-440 (529)
74 PRK10746 putative transport pr 49.5 3.2E+02 0.007 28.4 28.1 42 167-208 273-314 (461)
75 PF01545 Cation_efflux: Cation 47.1 77 0.0017 30.3 7.6 20 27-46 61-80 (284)
76 COG0531 PotE Amino acid transp 44.3 3.5E+02 0.0077 27.3 24.2 41 164-204 273-313 (466)
77 PRK04125 murein hydrolase regu 43.9 1.1E+02 0.0025 27.0 7.4 48 2-50 29-76 (141)
78 COG0833 LysP Amino acid transp 43.0 4.7E+02 0.01 28.4 18.9 49 5-53 158-206 (541)
79 COG1294 AppB Cytochrome bd-typ 40.0 4.2E+02 0.0092 27.0 17.2 30 317-346 310-339 (346)
80 PF06570 DUF1129: Protein of u 38.8 2.3E+02 0.005 26.2 9.1 68 252-323 119-187 (206)
81 PF12794 MscS_TM: Mechanosensi 38.7 4.2E+02 0.0092 26.6 14.5 21 217-237 126-147 (340)
82 COG4858 Uncharacterized membra 37.1 3.6E+02 0.0077 25.3 11.1 74 250-325 131-204 (226)
83 TIGR00912 2A0309 spore germina 36.5 4.3E+02 0.0093 26.1 21.7 26 186-211 274-299 (359)
84 PLN03074 auxin influx permease 36.1 2.7E+02 0.0058 29.4 10.1 104 203-308 336-454 (473)
85 PF05915 DUF872: Eukaryotic pr 36.0 2.3E+02 0.005 24.1 7.8 33 317-350 77-109 (115)
86 PF12811 BaxI_1: Bax inhibitor 35.5 2.3E+02 0.0051 27.9 8.8 104 10-130 150-257 (274)
87 COG3368 Predicted permease [Ge 32.7 3E+02 0.0066 29.0 9.4 122 224-348 114-242 (465)
88 COG1113 AnsP Gamma-aminobutyra 29.8 7E+02 0.015 26.5 18.6 35 4-38 124-158 (462)
89 PF05313 Pox_P21: Poxvirus P21 29.2 4.7E+02 0.01 24.3 10.7 48 250-298 87-135 (189)
90 COG3696 Putative silver efflux 28.9 4.9E+02 0.011 30.2 10.8 142 21-206 352-498 (1027)
91 TIGR02119 panF sodium/pantothe 27.8 4.8E+02 0.01 27.1 10.3 50 162-211 106-156 (471)
92 PF09877 DUF2104: Predicted me 27.5 2.5E+02 0.0054 23.4 6.3 82 35-132 6-94 (99)
93 COG0814 SdaC Amino acid permea 27.4 7E+02 0.015 25.7 22.7 51 6-59 127-177 (415)
94 COG4721 ABC-type cobalt transp 27.4 1.3E+02 0.0029 27.5 5.1 52 3-54 90-141 (192)
95 KOG1304 Amino acid transporter 26.8 4.2E+02 0.009 28.1 9.4 120 171-299 317-443 (449)
96 PF01102 Glycophorin_A: Glycop 26.1 94 0.002 26.9 3.8 17 331-347 78-94 (122)
97 KOG1286 Amino acid transporter 25.5 8.9E+02 0.019 26.3 20.4 125 175-299 315-461 (554)
98 TIGR03648 Na_symport_lg probab 24.6 8.8E+02 0.019 25.9 29.5 37 172-208 362-399 (552)
99 KOG0569 Permease of the major 22.4 7.8E+02 0.017 26.2 10.6 26 240-265 114-141 (485)
100 KOG1288 Amino acid transporter 20.7 1.2E+03 0.026 26.5 11.5 100 177-286 371-490 (945)
101 PF13124 DUF3963: Protein of u 20.5 85 0.0019 21.3 1.9 27 205-233 10-36 (40)
102 PRK10435 cadB lysine/cadaverin 20.3 9.3E+02 0.02 24.6 31.0 37 165-201 258-294 (435)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-79 Score=612.64 Aligned_cols=339 Identities=46% Similarity=0.705 Sum_probs=305.2
Q ss_pred CcccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCCC--ChHHH
Q 016122 1 MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGN--GATGL 78 (394)
Q Consensus 1 lLfgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~--~~~~~ 78 (394)
+|++||+|+||++|++|||++++++|||.||+|.++++|+.+|++||.+|+..+||+.+|++.|+|+|+++++ +.+++
T Consensus 132 iL~~IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~ 211 (503)
T KOG1291|consen 132 ILSNIPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQ 211 (503)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999974 57889
Q ss_pred HHHHhhchhhhHHHHHhhhhhhhccCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCC-CCC---
Q 016122 79 AISLLGAMVMPHNLFLHSALVLSRKIPRSV-RSIKEACRFYMIESGFALAVAFLINVSVISVS-GAVCSSSNI-NPE--- 152 (394)
Q Consensus 79 avaivGatImPhnlflhS~lv~~R~~~~~~-~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~-A~v~~~~g~-~~~--- 152 (394)
++|++||+|||||+|+||++||+|+.||+. ++++|+++|+.+|+.++++++|.||.+++.++ |+.+++... .+.
T Consensus 212 avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~ 291 (503)
T KOG1291|consen 212 AVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESAIALFVSFSINLFVISVFTAAGFYNKTILDVAGAC 291 (503)
T ss_pred HHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhh
Confidence 999999999999999999999999999965 47999999999999999999999999999999 776665422 211
Q ss_pred --CcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHH
Q 016122 153 --DQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSL 230 (394)
Q Consensus 153 --~~~~~~~~~l~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal 230 (394)
+.++..+.|+.+++..|++.+|+++.++|++|+++||||||+|||||||++||||+|||++||.||++||++||+|++
T Consensus 292 ~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~Ifai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL 371 (503)
T KOG1291|consen 292 LYNSNEADDADLFSAGLLLQCYFGPAALYIFAIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTL 371 (503)
T ss_pred hcCCCcchhhhhHHHHHHHHHHhccHHHHHHHHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhh
Confidence 123344679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcChHHHHHHHHHHHHhhhhhHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016122 231 IVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLF 310 (394)
Q Consensus 231 ~v~~~~g~~~~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iMG~~~n~~~~~il~~~~~~~i~~lni~~v~~~~~~~~~ 310 (394)
++++..|..+..++++++||+||+||||+++|+++|+|+|++||+|+|+...+..+|....+++.+|.|++++. .....
T Consensus 372 ~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~-~~~~~ 450 (503)
T KOG1291|consen 372 IVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMGVFKNGLVTEELTWTVAALVLGINGYFLVSF-FWSLV 450 (503)
T ss_pred heeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhhhhccCccceeeeehheeeeeeeeeEEeeee-hhhhc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999974 44444
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016122 311 HGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNK 346 (394)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~ 346 (394)
+.+.... ..+....+.|++++.||..+..+
T Consensus 451 ~~~~~~~------~~~~~~~~~y~~~i~yL~~~~l~ 480 (503)
T KOG1291|consen 451 GKHSKIV------VTVNVWTLAYLAFILYLAATCLN 480 (503)
T ss_pred CCceeee------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4332211 22334467899999999987643
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=3.6e-59 Score=479.37 Aligned_cols=297 Identities=44% Similarity=0.720 Sum_probs=275.8
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccc---cCCCChHHH
Q 016122 2 LFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQ---LKGNGATGL 78 (394)
Q Consensus 2 LfgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~---~~~~~~~~~ 78 (394)
+||+|.|+++++++++++.++++++++||++|+++..++++|.+||+.+++.++|||+|+++| ++|+ +|++++...
T Consensus 138 l~gip~~~~v~i~~~~~~~~l~l~~~~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~ 216 (439)
T PRK00701 138 LFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYL 216 (439)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHH
Confidence 679999999999999999888778899999999999999999999999999999999999999 8999 886667788
Q ss_pred HHHHhhchhhhHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccc
Q 016122 79 AISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCK 158 (394)
Q Consensus 79 avaivGatImPhnlflhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~~~~~ 158 (394)
++|++|+||||||+|+||++++||+.+++++..++.+|+.|+|+.+++.+++++|.++++++|+++|++|.+.
T Consensus 217 ~iaiiGttv~P~~~f~~ss~v~~k~~~~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~------- 289 (439)
T PRK00701 217 AAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTD------- 289 (439)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------
Confidence 9999999999999999999999986555555677889999999999999999999999999999999887541
Q ss_pred ccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCC
Q 016122 159 DLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGS 238 (394)
Q Consensus 159 ~~~l~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~ 238 (394)
..+..|++++|+|.+|++++++|++|+++|||+|+++++++||+++|||+|||.++|.|+..+|.++++|++++.++.+.
T Consensus 290 ~~~~~~~a~~L~p~~G~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~ 369 (439)
T PRK00701 290 VADIEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGE 369 (439)
T ss_pred cCCHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 13688999999999999999999999999999999999999999999999999999999999999999999888777654
Q ss_pred cChHHHHHHHHHHHHhhhhhHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016122 239 AGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFI 306 (394)
Q Consensus 239 ~~~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iMG~~~n~~~~~il~~~~~~~i~~lni~~v~~~~~ 306 (394)
.++.++++++|++|+++||++++|+++++|||++||+|||+++.|+++|++.++++.+|+|++++.+.
T Consensus 370 ~~p~~lli~aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 437 (439)
T PRK00701 370 LDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTFT 437 (439)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999999999999999999999999999999999999988653
No 3
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=2.3e-55 Score=444.50 Aligned_cols=266 Identities=44% Similarity=0.680 Sum_probs=236.0
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCC--CChHHHH
Q 016122 2 LFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKG--NGATGLA 79 (394)
Q Consensus 2 LfgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~--~~~~~~a 79 (394)
+||+|.|+++++++.+++.++++.+++||++|+++..++.+|.+||+++++.+||||+|+++|+++|+.|. ++....+
T Consensus 108 l~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~~P~~~~~~~g~~vP~~p~~~~~~~~~~ 187 (390)
T TIGR01197 108 LSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCAVFGTDGLLQA 187 (390)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhhcccCCCccCCCCchHHHH
Confidence 67999999999999999988888899999999999999999999999999999999999999988998763 3567889
Q ss_pred HHHhhchhhhHHHHHhhhhhhhccCCCChh-hHHHHHHHHH-------------HHHHHHHHHHH-HHHHHHHHHHHhhh
Q 016122 80 ISLLGAMVMPHNLFLHSALVLSRKIPRSVR-SIKEACRFYM-------------IESGFALAVAF-LINVSVISVSGAVC 144 (394)
Q Consensus 80 vaivGatImPhnlflhS~lv~~R~~~~~~~-~ik~a~~~~~-------------ids~ial~vs~-lIn~aIv~v~A~v~ 144 (394)
+|++|+||||||+|+||+++|||+++++++ ++|+++||+. .|+.++++... ++|.++++++|+++
T Consensus 188 vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~v~~~ilv~aaa~l 267 (390)
T TIGR01197 188 VGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVSFSINEFVIALFTAALFVNTNILVVAGATL 267 (390)
T ss_pred HHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887653 4566565554 45555555433 48999999999999
Q ss_pred ccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhh
Q 016122 145 SSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCL 224 (394)
Q Consensus 145 ~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~i 224 (394)
|+++.. +++.|++|+++.|+|.+|++|+++|++||++|||||++|+|++||++|+||+|||.++|.|++.+|.+
T Consensus 268 ~~~~~~------~~~~~~~~~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~~~~~~r~~~~~~~ 341 (390)
T TIGR01197 268 FNSNNN------ADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAI 341 (390)
T ss_pred ccCCCC------cCcCCHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 865311 12458999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhHHHHHHHHhcCCccc
Q 016122 225 AIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKM 273 (394)
Q Consensus 225 aiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iM 273 (394)
+++|++++..+.+..++.++++++|++|+++|||+++|+++++|||++|
T Consensus 342 ~ii~aliv~~~~g~~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 342 AIIPCLLVAAFGGREGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 8999998887766667899999999999999999999999999999998
No 4
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-53 Score=426.88 Aligned_cols=294 Identities=38% Similarity=0.569 Sum_probs=271.1
Q ss_pred CcccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCCCChHHHHH
Q 016122 1 MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAI 80 (394)
Q Consensus 1 lLfgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~~~~~~av 80 (394)
++||+|+.+|+++|++++++++..+ |||++|++...++.+|.+||.++++.++|+|+++.+|+++|+.|+.++++.++
T Consensus 120 ll~~ip~~~g~iItav~~~iil~~~--~~r~~E~~v~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii 197 (416)
T COG1914 120 LLFGIPLIIGAVITAVDVLIILLLK--GYRLLERVVLILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLII 197 (416)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHH
Confidence 4789999999999999999887764 89999999999999999999999999999999999999999988756788999
Q ss_pred HHhhchhhhHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccc
Q 016122 81 SLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDL 160 (394)
Q Consensus 81 aivGatImPhnlflhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~~~~~~~ 160 (394)
|++|||||||++|+||+.+|+++. ++++.+++.|+.++|+.+++..+.++|.++++++|..+|.++...+ ..
T Consensus 198 ~ilGaTVmP~i~y~~s~~v~~~~~--~~~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~------~~ 269 (416)
T COG1914 198 AILGATVMPHILYLHSSLVQDAGI--KGEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQD------VA 269 (416)
T ss_pred HHhccchhHHHHHhhcceeccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc------cc
Confidence 999999999999999999998443 3345667899999999999999999999999999999987754211 34
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcC
Q 016122 161 DLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAG 240 (394)
Q Consensus 161 ~l~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~ 240 (394)
+++++++.++|.+|+.+..+|++++++||++|+++++|+||++|+|+++++.++|.|+..+|.++++|+..+.+..| +
T Consensus 270 ~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~ 347 (416)
T COG1914 270 DAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFG--D 347 (416)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHc--c
Confidence 78999999999999999999999999999999999999999999999999999999999999999999887777777 7
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016122 241 AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFI 306 (394)
Q Consensus 241 ~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iMG~~~n~~~~~il~~~~~~~i~~lni~~v~~~~~ 306 (394)
+.++++++|+++++++||+++|++.+++||++||+|+|++|.++++|...+.+..+|++++++++.
T Consensus 348 ~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~~L~i~li~~~~~ 413 (416)
T COG1914 348 PARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIVALNIILLVGTLG 413 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999999999999999999999999998754
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=7.3e-51 Score=408.01 Aligned_cols=272 Identities=39% Similarity=0.603 Sum_probs=247.9
Q ss_pred CcccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCCCChHHHHH
Q 016122 1 MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAI 80 (394)
Q Consensus 1 lLfgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~~~~~~av 80 (394)
+++|+|.++++++++++++.++++.+++||++|++++.++.+|.+||+++++.++|||+++++|++.|++|+.++...++
T Consensus 85 ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~v 164 (358)
T PF01566_consen 85 LLFGIPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAV 164 (358)
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHH
Confidence 36799999999999999999988888899999999999999999999999999999999999996569999856788999
Q ss_pred HHhhchhhhHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccc
Q 016122 81 SLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDL 160 (394)
Q Consensus 81 aivGatImPhnlflhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~~~~~~~ 160 (394)
|++|+|+||||+|+||++++||+++++++..++++|+.|+|+.+++.+++++|.++++++|.++|++|.+. .
T Consensus 165 aliGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~--------~ 236 (358)
T PF01566_consen 165 ALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEV--------E 236 (358)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch--------h
Confidence 99999999999999999999999887443222679999999999999999999999999999998554432 4
Q ss_pred chHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCc
Q 016122 161 DLNKASFLLRNVLG-SWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSA 239 (394)
Q Consensus 161 ~l~~a~~~L~~~~G-~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~ 239 (394)
+.+|++++|+|.+| +|++++|++|+++|||||+++++++++++++|+++++.+++.|+..+|...+.|++.+.+..+..
T Consensus 237 ~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (358)
T PF01566_consen 237 TAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGAP 316 (358)
T ss_pred hHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 78899999999999 79999999999999999999999999999999999999998888888999999988777765543
Q ss_pred C-hHHHHHHHHHHHHhhhhhHHHHHHHHhcCCcccCCCCchH
Q 016122 240 G-AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSI 280 (394)
Q Consensus 240 ~-~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iMG~~~n~~ 280 (394)
. |.++++++|+++++.+|++++|+++++|||++||+|||+|
T Consensus 317 ~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 317 GAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 3 5789999999999999999999999999999999999986
No 6
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.14 E-value=0.39 Score=49.91 Aligned_cols=157 Identities=21% Similarity=0.168 Sum_probs=91.9
Q ss_pred ccchHH-HHHHHHHHHHHHHHHHHHHHhhc--CCCHhhhhccccccccCC---CChHHHHHH------HhhchhhhHHHH
Q 016122 26 QYGVRK-LEFLIAFLVFTMAGCFFAELGYA--KPEAKEVLHGLFVPQLKG---NGATGLAIS------LLGAMVMPHNLF 93 (394)
Q Consensus 26 ~~g~rk-lE~~~~~Lv~im~l~F~~~~~~~--~P~~~~v~~Gl~vP~~~~---~~~~~~ava------ivGatImPhnlf 93 (394)
++|.+| +||..++++-...++|+...+++ .|...|=.+-++.|..+. .+.+..|.| -+|.-+| +-
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~m---it 236 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIM---IT 236 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHH---HH
Confidence 567888 99999999999888888877764 787777777777887532 122222222 1333333 23
Q ss_pred HhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHHHHHHHHHhh
Q 016122 94 LHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVL 173 (394)
Q Consensus 94 lhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~~ 173 (394)
+-|++-|++.. .+.+......|+.+++...+.|=-++-..+.. .+.|. .-.-..+-++-+.+. +
T Consensus 237 YsSYL~k~~~l------~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--~~~Gp------gL~Fi~LP~if~~mp--~ 300 (439)
T COG0733 237 YSSYLSKKSDL------VSSALSIVLLNTLISLLAGLVIFPALFSFGAD--ASQGP------GLVFIVLPAVFNQMP--L 300 (439)
T ss_pred HHhhcCcccch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCC------eeehhHHHHHHHhCc--h
Confidence 44554333333 34566777788888877764443333322221 11110 001123333333343 7
Q ss_pred hhHHHHHHHHHHHHhhhhhhHhhhhhHH
Q 016122 174 GSWSSKLFAIALLASGQSSTITGTYAGQ 201 (394)
Q Consensus 174 G~~a~~ifaigLlaAg~sStit~t~agq 201 (394)
|+.-..+|-+.++.||.||++.---.--
T Consensus 301 G~~~~~lFFl~l~fAalTS~iSmlE~~v 328 (439)
T COG0733 301 GTLFGILFFLLLLFAALTSAISMLEVLV 328 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999876544433
No 7
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.48 Score=49.46 Aligned_cols=254 Identities=15% Similarity=0.158 Sum_probs=120.7
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc-C-CCHhhhhccccccccCCCChHHHHH
Q 016122 3 FKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA-K-PEAKEVLHGLFVPQLKGNGATGLAI 80 (394)
Q Consensus 3 fgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~-~-P~~~~v~~Gl~vP~~~~~~~~~~av 80 (394)
.++|.|+++++.++.+.+..+ +|||.++++-...+-.+.+.|.+..... + -+..+.... -.|+-+. ....++
T Consensus 126 ~~~~~~~~ili~g~l~~l~~i---fG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~-~~~~~~~--~fl~a~ 199 (442)
T COG1457 126 TGLPVWAGILIIGVLMTLVTI---FGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWV-KGPTSPL--SFLSAL 199 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec-cCCCcch--hHHHHH
Confidence 468999999999877665544 4667666666666666666666665443 2 122222222 1244332 344555
Q ss_pred HHhhchhhhHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccc
Q 016122 81 SLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDL 160 (394)
Q Consensus 81 aivGatImPhnlflhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~~~~~~~ 160 (394)
+++=+-.+-+..|.-- -+|-.++++ . +++. .-+.+|..++ +.+++++++..--..|..
T Consensus 200 slv~g~~~sw~~~~aD---ysRy~~~~t-~-~~~~----~~~~~G~~l~---~~~~~ilGa~~a~a~g~~---------- 257 (442)
T COG1457 200 SLVIGSFASWGPYAAD---YSRYAPSPT-P-SKAF----LAAVLGFFLG---TSFMMILGAALAAAAGNA---------- 257 (442)
T ss_pred HHHHHHHHhhhhhhhh---hhhhcCCCc-h-HHHH----HHHHHHHHHH---HHHHHHHHHHHHHhcCCC----------
Confidence 5443333333333211 123222221 1 2322 2223343333 556666665432222211
Q ss_pred c-hHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCc
Q 016122 161 D-LNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSA 239 (394)
Q Consensus 161 ~-l~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~ 239 (394)
| ..+.-..+++ +|..+.. .+..+..+......|++..-++...+. .+|+.|...+... +-+++....+.
T Consensus 258 ~~~~~~~~~~G~-~g~~~~l----il~l~~~ttN~~nlYsa~ls~~~i~~~-l~k~~~~v~~~v~--igt~la~~~~~-- 327 (442)
T COG1457 258 DSIADVMLGLGG-FGLPAIL----ILVLGTVTTNANNLYSAGLSFANIIPK-LSKVTRVVIAGVG--IGTLLALAGPF-- 327 (442)
T ss_pred chHHHHHHhccc-HHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHhhhh-hhhHHHHHHHHHH--HHHHHHHHHHH--
Confidence 2 2222222222 3433333 333444455556666666555554432 4455555444331 22222222211
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHHHH-HHhcCC-----cccCCCCchHHHHHHHHHHHHHHH
Q 016122 240 GAGQLIIIASMILSFELPFALVPLL-KFTSSK-----VKMGMHANSIAITAITWIIGSLIM 294 (394)
Q Consensus 240 ~~~~Lli~~qvl~sl~LPfalipLl-~~~s~~-----~iMG~~~n~~~~~il~~~~~~~i~ 294 (394)
-.+...++...+.+..-|...+-+- +|..+| +..+.++.-.+.-...|+...++-
T Consensus 328 f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~rr~~~~~~~~~~~~~~~~~g~~aw~~~~iv~ 388 (442)
T COG1457 328 FYNFFENFLLLLGYFIPPWGGVMIADYFIVRRRYSAYNIDDWEKGENLPGGVAWIAGLIVG 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchHHHHHHHHHH
Confidence 1334566666778888888877765 233332 333334333445566676666555
No 8
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.04 E-value=0.26 Score=50.70 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=35.1
Q ss_pred cCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 016122 4 KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEA 58 (394)
Q Consensus 4 giPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~ 58 (394)
++|.+.+.++..+..-.+.. .|.|..+|+...++..|.+.|+......-|+|
T Consensus 117 ~~~~~~~~~~f~~i~~~iv~---~g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~ 168 (394)
T PF03222_consen 117 DLSPWLSSLLFTIIFGGIVY---FGTKAVDRINRVLVFGMIISFIILVVYLIPHW 168 (394)
T ss_pred CCcHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45666666554433222222 35678899988899999999888887776765
No 9
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.92 E-value=0.066 Score=55.42 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=101.8
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc---CCC-----HhhhhccccccccCCCC
Q 016122 3 FKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA---KPE-----AKEVLHGLFVPQLKGNG 74 (394)
Q Consensus 3 fgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~---~P~-----~~~v~~Gl~vP~~~~~~ 74 (394)
|++|.|+..++..+.+.+.. -.|.|++-++...++=+|++.|+...+.. |.+ ..++.++.|-|+-
T Consensus 135 f~i~~~~~gi~l~~l~~~vi---~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~a---- 207 (416)
T PF01235_consen 135 FGIPPWITGIILAILVALVI---FGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKA---- 207 (416)
T ss_pred ccccHHHHHHHHHHHHHHHH---HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCcc----
Confidence 68888776655554443222 36899999999999999998887765543 322 2455555554432
Q ss_pred hHHHHHHHhhchhhhHHHHHhhhhhhhccC-------C---------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016122 75 ATGLAISLLGAMVMPHNLFLHSALVLSRKI-------P---------RSVRSIKEACRFYMIESGFALAVAFLINVSVIS 138 (394)
Q Consensus 75 ~~~~avaivGatImPhnlflhS~lv~~R~~-------~---------~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~ 138 (394)
..=|.+|++++--. +.+. .|+. . +.++.+||.+ ...+|..+--++-+-++..+++
T Consensus 208 ---a~GG~~G~~i~~ai---~~Gv--~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~~~~~vFiDTiiVCt~TalvIl 278 (416)
T PF01235_consen 208 ---AFGGFAGSTIMMAI---RQGV--ARGLFSNEAGLGSAPIAHAAAETDHPVRQGL-VQMFEVFIDTIIVCTITALVIL 278 (416)
T ss_pred ---chhhHHHHHHHHHH---HHhh--hhhhccCCCCCChhHHHHHHhcCCCcHHHee-eeeehHhHHHHHHHHHHHHHhh
Confidence 12355666664211 1111 1222 0 1123345532 1222333322222233334444
Q ss_pred HHHhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhh
Q 016122 139 VSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 208 (394)
Q Consensus 139 v~A~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl 208 (394)
+++.- .. .++ ..+.+=..++++..+|+++.++.++.++.-++||.++-.|-|+...+=.+
T Consensus 279 ~tG~~--~~---~~~-----~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 279 VTGVW--SW---GSG-----LEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred ccCCC--CC---CCc-----chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33211 01 111 01223345789999999999999999999999999999999997777666
No 10
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=96.86 E-value=0.44 Score=49.19 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=37.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHh
Q 016122 4 KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAK 59 (394)
Q Consensus 4 giPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~ 59 (394)
++|.+.+.++..+..-.+.+ .|.|..+|+..+++..|.++|+......-|+|.
T Consensus 117 ~i~~~~~~l~F~~~~~~iv~---~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~ 169 (403)
T PRK15132 117 SMSPTAGVLLFTLVAGGVVC---VGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIH 169 (403)
T ss_pred CCChHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45777666554443222222 467899999999999999999887777778774
No 11
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.69 E-value=0.34 Score=50.34 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=100.3
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCHhhhhccccccccCCCC
Q 016122 3 FKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA--------KPEAKEVLHGLFVPQLKGNG 74 (394)
Q Consensus 3 fgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~--------~P~~~~v~~Gl~vP~~~~~~ 74 (394)
+++|.|+..++..+.+... -..|.|++-++...++-+|+..|+...+.. .|-.+.+.++.|-|+-
T Consensus 162 ~~~~~~v~~i~l~~l~~~v---i~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a---- 234 (425)
T TIGR00835 162 FNVPKLVTGIVLTVLTALI---IFGGLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDA---- 234 (425)
T ss_pred cCCcHHHHHHHHHHHHHHH---HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchh----
Confidence 5788887655544433322 235899999999888888887774332221 2334455565554431
Q ss_pred hHHHHHHHhhchhhhH-------HHH-----------HhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016122 75 ATGLAISLLGAMVMPH-------NLF-----------LHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSV 136 (394)
Q Consensus 75 ~~~~avaivGatImPh-------nlf-----------lhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aI 136 (394)
.+=|.+|++++-- -+| .|++. +.++.+||.+ ...+|..+--++.+-++..+
T Consensus 235 ---~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a-------~~~hP~~QGl-~~~~~vfiDTivvCt~Talv 303 (425)
T TIGR00835 235 ---AAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAA-------QVSHPVRQGL-VQMLGVFIDTMIVCTATALV 303 (425)
T ss_pred ---hHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHh-------cCCCcHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 1234555554321 111 22221 1123455542 23334444333333344444
Q ss_pred HHHHHhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCC
Q 016122 137 ISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 211 (394)
Q Consensus 137 v~v~A~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~ 211 (394)
+++++. +.+ .++.+ ...+. .++++..+|.|+.++.++.++.-++|+.++-.|-|+...+=.++.|
T Consensus 304 il~tg~--~~~---~~~~~---g~~lt--~~af~~~~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 304 ILLSGV--WNN---GEGLS---GAQLT--QQALSYGLGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHcCc--cCC---CCCCc---HHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444331 110 00100 12233 3678888899999999999999999999999999987776655655
No 12
>PRK10483 tryptophan permease; Provisional
Probab=96.55 E-value=1.1 Score=46.38 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=35.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 016122 4 KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKP 56 (394)
Q Consensus 4 giPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P 56 (394)
++|.|.+.++..+..-.+.+ .|-|..||+..+++..|.++|+......-|
T Consensus 124 ~i~~~~~~llF~~~~~~iv~---~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~ 173 (414)
T PRK10483 124 NVPARAAGFGFALLVAFVVW---LSTKAVSRMTAIVLGAKVITFFLTFGSLLG 173 (414)
T ss_pred CCcHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888888776654333444 356888888888888888888877665444
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=96.44 E-value=0.38 Score=48.54 Aligned_cols=73 Identities=19% Similarity=0.081 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhh-HHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhc
Q 016122 163 NKASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIG 236 (394)
Q Consensus 163 ~~a~~~L~~~~G~-~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~ 236 (394)
....+.++...|. +...+..++-..|-.+|.....++-.-..++.++++.++ .+|.....++.+|.++++.+.
T Consensus 253 ~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 253 DGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-KGRFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCchhhhhhHHhHHHHHHHh
Confidence 3445566666654 466666777666777777666665554466666654322 223444556667777776554
No 14
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.87 E-value=0.88 Score=48.34 Aligned_cols=174 Identities=15% Similarity=0.079 Sum_probs=77.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHH--HHHHhhcCCCHhhhhccccccccCC--C-ChHHHHHH----HhhchhhhHHHHHhh
Q 016122 26 QYGVRKLEFLIAFLVFTMAGCF--FAELGYAKPEAKEVLHGLFVPQLKG--N-GATGLAIS----LLGAMVMPHNLFLHS 96 (394)
Q Consensus 26 ~~g~rklE~~~~~Lv~im~l~F--~~~~~~~~P~~~~v~~Gl~vP~~~~--~-~~~~~ava----ivGatImPhnlflhS 96 (394)
.+|.|+.+|++.....+..+.. +......-|...+=++-++.|.... + +.+..|.+ -+|.- +.-.+-+.|
T Consensus 196 ~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig-~G~~it~~S 274 (523)
T PF00209_consen 196 WKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIG-FGIMITYGS 274 (523)
T ss_dssp TTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTT-SSHHHHHHT
T ss_pred EeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCC-cceEEEEcC
Confidence 4689999998765432111111 1112233466666666666775432 1 11122322 11111 111222333
Q ss_pred hhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCc-ccccccchHHHHHHHHHh-hh
Q 016122 97 ALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQ-ASCKDLDLNKASFLLRNV-LG 174 (394)
Q Consensus 97 ~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~-~~~~~~~l~~a~~~L~~~-~G 174 (394)
+. | ++++-.|++.-....|+.+++..++.+-. ++.-.|. ..|.+.++- ++..........+++... .|
T Consensus 275 y~---~---~~~n~~~~a~~v~~~~~~~sllag~~if~-~~g~~a~---~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~ 344 (523)
T PF00209_consen 275 YN---K---FKNNIFRDALIVAFINTLVSLLAGLVIFS-VLGFLAN---ELGVPISDVPESGPGLAFIVLPEAFSQMPGG 344 (523)
T ss_dssp TS-------TTS-SHHHHHHHHHHHHHHHHTTGTHHHH-HHHHHHH---HHHHHHHH--H-CHHHHHTHHHHHHTTSTTH
T ss_pred cC---C---CCccccccceEEEcCchhhhHhHHHHHHh-HHhhccc---CCCCChhHhhCcCCCchHHHHHHHHHcCCCC
Confidence 32 1 11223577888888888888776654432 2211111 111111000 000001111223333333 45
Q ss_pred hHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcC
Q 016122 175 SWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDL 210 (394)
Q Consensus 175 ~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~ 210 (394)
+.-..+|-+.++.+|.+|.+...-.--...++-++.
T Consensus 345 ~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~ 380 (523)
T PF00209_consen 345 RFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFPI 380 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-
T ss_pred cChHHHHHHHHHHHHhhhcCCceeceeEeeeecCcc
Confidence 566677888888899998877554444333333333
No 15
>PRK11375 allantoin permease; Provisional
Probab=95.85 E-value=3 Score=44.03 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhhhhhH-hhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHH-hcCCcChHHHHHHHHHHHH
Q 016122 176 WSSKLFAIALLASGQSSTI-TGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVAL-IGGSAGAGQLIIIASMILS 253 (394)
Q Consensus 176 ~a~~ifaigLlaAg~sSti-t~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~-~~g~~~~~~Lli~~qvl~s 253 (394)
.+..+.++.++.+..+.-. ...|++...+...+..+.+++ |. +...+++-.++... +. .....+..+.+.+.+
T Consensus 308 ~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~~~-~~--~~i~~iig~~~~pw~~~--~~~~~f~~FL~~lg~ 382 (484)
T PRK11375 308 FASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLTYK-NG--VLIASIISLLICPWKLM--ENQDSIYLFLDIIGG 382 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccchh-hH--HHHHHHHHHHhccHHHh--ccHHHHHHHHHHHHH
Confidence 3444444555555555534 588999999988886554432 22 11122221111111 11 123346777777888
Q ss_pred hhhhhHHHHHHHH
Q 016122 254 FELPFALVPLLKF 266 (394)
Q Consensus 254 l~LPfalipLl~~ 266 (394)
+.=|.+.+-+.-+
T Consensus 383 ~l~Pi~gImi~DY 395 (484)
T PRK11375 383 MLGPVIGVMMAHY 395 (484)
T ss_pred HHHHHHHHHHhhh
Confidence 8888887777644
No 16
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=95.79 E-value=2.3 Score=44.37 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=25.8
Q ss_pred HHHHHHHhhhh-HHHHHHHHHHHHhhhhhhHhhhhhHHHHH
Q 016122 165 ASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYVM 204 (394)
Q Consensus 165 a~~~L~~~~G~-~a~~ifaigLlaAg~sStit~t~agq~vm 204 (394)
..+.+...+|. ++..++.+..+.+.+++..+..++....+
T Consensus 291 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 331 (482)
T TIGR00907 291 IAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMI 331 (482)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666776 66666666677777777776666666443
No 17
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=95.76 E-value=2.7 Score=42.87 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=30.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhhc
Q 016122 166 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFLD 209 (394)
Q Consensus 166 ~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl~ 209 (394)
....+..++++-.-++.+|+++|..|+.-+...+.. .+.++..+
T Consensus 284 p~~~~~~lp~~l~gl~~agilaA~mST~~s~l~a~ss~~~~Di~~ 328 (407)
T TIGR00813 284 PLLVQELMPPGLAGLFLAAILAAVMSTLSSQLNSASTVFTMDLYK 328 (407)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 344566778888899999999999998765554444 34455543
No 18
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.62 E-value=2.9 Score=43.64 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=39.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCC
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 211 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~ 211 (394)
++++..+|+|+.++-+++++.=++||.+...|-|+.-++=..+.|
T Consensus 341 ~A~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~~k 385 (452)
T COG1115 341 AAFSSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFGSK 385 (452)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 579999999999999999999999999999999987776555444
No 19
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=95.56 E-value=1.1 Score=44.95 Aligned_cols=41 Identities=29% Similarity=0.510 Sum_probs=28.4
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 016122 2 LFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 44 (394)
Q Consensus 2 LfgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~ 44 (394)
.||+|.|+|.++......+.++++| .+++|++..+.+=.+.
T Consensus 110 ~~~lP~wiGali~i~~v~i~lfl~~--vegi~tvn~iI~P~LI 150 (349)
T COG3949 110 MFGLPYWIGALIIILLVLILLFLGR--VEGIITVNGIITPFLI 150 (349)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHhc--ccceeeeheeHHHHHH
Confidence 3799999998777776666777654 5777776665443333
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=95.35 E-value=4.3 Score=42.38 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
.....+..+|++...+..++.+.+.+++..+...++..++-..
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~am 312 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSA 312 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888889888888888888777777554444
No 21
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=94.47 E-value=7.5 Score=40.80 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=30.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhh
Q 016122 166 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFL 208 (394)
Q Consensus 166 ~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl 208 (394)
.......++++-..++..|+++|.+|+.-+...+.. .+..+..
T Consensus 309 p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~~~~Di~ 352 (483)
T PRK09442 309 PTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDLY 352 (483)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788898899999999999998655554433 3445554
No 22
>PRK15049 L-asparagine permease; Provisional
Probab=94.44 E-value=7.8 Score=40.92 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 166 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 166 ~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
...++...++++..+..+.++.+.+++..+..+++...+-.+
T Consensus 292 ~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~ 333 (499)
T PRK15049 292 VTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSM 333 (499)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777778888888888888888888877555444
No 23
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=94.44 E-value=7.9 Score=40.94 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhhc----CCccchhhhhhhhhhhHH
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFLD----LRLKPWLRNFLTRCLAIV 227 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl~----~~~~~~~r~l~tr~iaii 227 (394)
......+.++..-++..|+++|.+|+.-+.-.+.. .+.+++.+ .+.++.......|...++
T Consensus 316 ~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~Diy~~~~~~~~s~~~~l~~~Ri~~v~ 381 (502)
T PRK15419 316 ELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLV 381 (502)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 34455667788889999999999998655444333 44555543 222222223356655443
No 24
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=94.34 E-value=7.9 Score=40.58 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=37.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHh
Q 016122 5 IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAK 59 (394)
Q Consensus 5 iPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~ 59 (394)
+|.|+..++..+. +..+-..|-|.++|+...|+..+.++|+...+..-|+|.
T Consensus 136 ~~r~l~slifv~~---l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~ 187 (443)
T PRK13629 136 LNRGFVALFLLLL---MAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWN 187 (443)
T ss_pred ccHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4666555443332 222223567999999999999999999999999889885
No 25
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=94.09 E-value=8.9 Score=40.17 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChHHH
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQL 244 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~L 244 (394)
.....+..+|+++..++++.++.|.+++++..+++..--.++....+ ++... ++-+++...+. .-+..++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~is-----Y~~~v----~i~~l~S~~lS-n~G~~~I 336 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLS-----YRTLV----FILGGFSMVVS-NLGLSQL 336 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----HHHHH----HHHHHHHHHHH-HhHHHHH
Confidence 44567889999999999999999999999998888764444443311 22111 11122222222 2346677
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 016122 245 IIIASMILSFELPFALVPLL 264 (394)
Q Consensus 245 li~~qvl~sl~LPfalipLl 264 (394)
+.++-=++.+.=|.+++-++
T Consensus 337 I~~s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 337 IQISVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 77776677788888765444
No 26
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.95 E-value=8.5 Score=39.49 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChH
Q 016122 163 NKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAG 242 (394)
Q Consensus 163 ~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~ 242 (394)
+-+++.-+..+|+++..+.+++...|.+++.+.-+.+.. ++++...+|..++... ++-++....+.. .+.+
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a----~~f~~~~~k~~y~~~v----~~~~l~s~~ia~-~Gl~ 325 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACS----EYFHKLVPKLSYKTWV----IVFTLFSFIVAN-LGLT 325 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCHHHHH----HHHHHHHHHHHH-hCHH
Confidence 345677788999999999999999999998877666643 3333221222222111 111222222221 3577
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Q 016122 243 QLIIIASMILSFELPFALVPLLK 265 (394)
Q Consensus 243 ~Lli~~qvl~sl~LPfalipLl~ 265 (394)
+++.++.=+..+.-|.+..-++.
T Consensus 326 ~Ii~~~~PvL~~~YP~~i~lill 348 (378)
T TIGR00796 326 QIISISIPVLMIIYPLAIVLILL 348 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877888888988776665
No 27
>PRK09664 tryptophan permease TnaB; Provisional
Probab=93.89 E-value=9.3 Score=39.74 Aligned_cols=226 Identities=11% Similarity=-0.031 Sum_probs=100.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCC--HhhhhccccccccCCC-C---hHH
Q 016122 4 KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPE--AKEVLHGLFVPQLKGN-G---ATG 77 (394)
Q Consensus 4 giPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~--~~~v~~Gl~vP~~~~~-~---~~~ 77 (394)
++|.+.+.++..+..-.+.+ .|-|..+++...++..|.++|+......-|+ +....+. |...++ . ...
T Consensus 123 ~i~~~~~~llF~~~~~~~v~---~gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~---~~~~~~~~~~~~i~ 196 (415)
T PRK09664 123 HANPRIVGICTAIFVASVLW---ISSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDA---TSTTAGTSYFPYIF 196 (415)
T ss_pred CCcHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcC---ccccccchHHHHHH
Confidence 46777655443332222333 3568888888888888888888766665443 3333222 222211 1 122
Q ss_pred HHHHHhhchhhhHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccc
Q 016122 78 LAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASC 157 (394)
Q Consensus 78 ~avaivGatImPhnlflhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~~~~ 157 (394)
.++-++=+...=|+ .=+++++- .+++.+++|++ -.+-+.+.+++-++-..+++.. ..+++... ...
T Consensus 197 ~alPVl~~SFgfh~--iIPsl~~y--~~~d~~~~~ka---Il~Gs~IpLviY~~W~~~ilG~----lp~~~~~~---~~~ 262 (415)
T PRK09664 197 MALPVCLASFGFHG--NIPSLIIC--YGKRKDKLIKS---VVFGSLLALVIYLFWLYCTMGN----IPRESFKA---IIS 262 (415)
T ss_pred HHHHHHHHhhhCCC--cchHHHHH--hCccHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC----CCHHHHHH---HHH
Confidence 22222211100111 11223322 22222334443 3344555555444444444431 11110000 000
Q ss_pred cccchHHHHHH-HHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhc
Q 016122 158 KDLDLNKASFL-LRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIG 236 (394)
Q Consensus 158 ~~~~l~~a~~~-L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~ 236 (394)
+..++.+.... .+..-+++..++..+=-..|-.+|-+..+++-.=-+.|.++++.++ ..|..+..+..+|.++.+.+.
T Consensus 263 ~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~~-~~r~~~~~ltflPPl~~al~~ 341 (415)
T PRK09664 263 SGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSH-GGRFKTVLLTFLPPALLYLIF 341 (415)
T ss_pred cCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-ccceeeehhhHhhhHHHHHHh
Confidence 00122222222 2223334444433333333445555555555544666777776433 345566677888988887764
Q ss_pred CCcChHHHHHHHHHH
Q 016122 237 GSAGAGQLIIIASMI 251 (394)
Q Consensus 237 g~~~~~~Lli~~qvl 251 (394)
- .+....+.++...
T Consensus 342 P-~gFl~AL~yAG~~ 355 (415)
T PRK09664 342 P-NGFIYGIGGAGLC 355 (415)
T ss_pred h-HHHHHHHHHHHHH
Confidence 2 2333445555443
No 28
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=93.58 E-value=9.1 Score=39.46 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 016122 22 LALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEA 58 (394)
Q Consensus 22 L~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~ 58 (394)
...-+.|.|.+.|+..+++..+.+.++......-|+|
T Consensus 134 ~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 134 VAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444668899999998888777777777776666655
No 29
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=93.55 E-value=3.8 Score=41.66 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=31.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhhcC
Q 016122 166 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFLDL 210 (394)
Q Consensus 166 ~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl~~ 210 (394)
...+...++++..-++.+++++|.+|+.-+...+.. .+.++..+.
T Consensus 282 ~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~~~Di~~~ 327 (406)
T PF00474_consen 282 PYLAAQYLPPGLAGLFLAGILAAIMSTADSLLLAISSIFSRDIYKP 327 (406)
T ss_dssp HHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhccchhHHHHHHHHHHhhhHHHHHHHhhhhhhhhHHhhhc
Confidence 345667778888889999999999998766666544 456777653
No 30
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=93.30 E-value=11 Score=38.79 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=19.9
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 171 NVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 171 ~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
+.+|++...+..++.+.+..++..+..+++...+.++
T Consensus 274 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ 310 (445)
T PRK11357 274 PALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAM 310 (445)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3467665555555555555555555555555444333
No 31
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.13 E-value=13 Score=38.92 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=82.6
Q ss_pred hhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHHHHHHHHHhhhhHHHH
Q 016122 100 LSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSK 179 (394)
Q Consensus 100 ~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~a~~ 179 (394)
++|+.+++ ||..|+...-..++...-.+|-....-++|..- +.-.++.+ .-+=..+.-+..+|+.+..
T Consensus 210 ~~~g~~~~----k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~---~~~~~~~~-----g~~lL~~i~~~~~G~~G~~ 277 (427)
T PF05525_consen 210 RQKGYKDK----KEIKKYTIKAGLIAGILLALIYGGLAYLGATSS---GSFPDDIN-----GAELLSQIANHLFGSAGQI 277 (427)
T ss_pred HHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---ccccCCCC-----HHHHHHHHHHHHcChhHHH
Confidence 55665432 233455545555555555555555555555421 11011111 1223445667889999999
Q ss_pred HHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhH
Q 016122 180 LFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFA 259 (394)
Q Consensus 180 ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfa 259 (394)
++++..+.|.+++++.-+.+..--.++..+ |.+ ++....... +.+.+++ .-+..+++.++.=++.+.=|.+
T Consensus 278 ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-kis---Y~~~v~i~~-i~S~~ia----n~Gl~~Ii~~s~PiL~~iYP~~ 348 (427)
T PF05525_consen 278 LLGIIVFLACLTTAIGLISACAEYFSELFP-KIS---YKVWVIIFT-IFSFIIA----NLGLDQIIKISVPILMFIYPVA 348 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC---hHHHHHHHH-HHHHHHH----HhCHHHHHHHHHHHHHHHhHHH
Confidence 999999999999998888777655555554 322 221111111 1222322 2457788888777778888888
Q ss_pred HHHHH
Q 016122 260 LVPLL 264 (394)
Q Consensus 260 lipLl 264 (394)
++-++
T Consensus 349 IvLIl 353 (427)
T PF05525_consen 349 IVLIL 353 (427)
T ss_pred HHHHH
Confidence 65544
No 32
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=93.04 E-value=11 Score=38.14 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhc
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLD 209 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~ 209 (394)
.....+...|++..+++.+++..+.+++..+...++...+...-+
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 334455555689999999999999999988888887766555543
No 33
>TIGR00930 2a30 K-Cl cotransporter.
Probab=92.77 E-value=23 Score=40.86 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhh
Q 016122 177 SSKLFAIALLASGQSSTITGTYAGQYVMQGFL 208 (394)
Q Consensus 177 a~~ifaigLlaAg~sStit~t~agq~vm~gfl 208 (394)
...+..+|.+.+.++|..+..++...++...-
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmA 417 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALC 417 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688889999999999888888886665443
No 34
>PRK11387 S-methylmethionine transporter; Provisional
Probab=92.69 E-value=14 Score=38.42 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 164 KASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 164 ~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
....+++...|+++..+..++.+.+.+++..++.+++...+..+
T Consensus 276 p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ 319 (471)
T PRK11387 276 PFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSL 319 (471)
T ss_pred hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455666667888888888888888888888878777555444
No 35
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=92.34 E-value=16 Score=38.12 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhh
Q 016122 166 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFL 208 (394)
Q Consensus 166 ~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl 208 (394)
.....+.++++...++..|+++|..|+.-+...+.. ...++..
T Consensus 308 p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~~~~Diy 351 (471)
T TIGR02119 308 PLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSSTIIKDLY 351 (471)
T ss_pred HHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788899999999999999998766554443 3445544
No 36
>PRK12488 acetate permease; Provisional
Probab=92.24 E-value=19 Score=38.68 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=20.9
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhccchHH
Q 016122 2 LFKIPVWIGVLLTGFSTLILLALQQYGVRK 31 (394)
Q Consensus 2 LfgiPl~~gvlit~~~t~~lL~l~~~g~rk 31 (394)
++|+|.|.+++++++.+.++..+ .|+|-
T Consensus 175 l~gi~~~~~iii~~~i~~~Yt~~--GGm~a 202 (549)
T PRK12488 175 LFGISYLYAVVIVGALMVLYVTF--GGMLA 202 (549)
T ss_pred HhCCCHHHHHHHHHHHHHHHHhc--cchhH
Confidence 47999999999998877666554 45554
No 37
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=91.81 E-value=17 Score=37.20 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhHHHH
Q 016122 183 IALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVP 262 (394)
Q Consensus 183 igLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfalip 262 (394)
+.+..+..+......|++..-++..+. |.+++.+.+. +.++ +.+++... ..+.+..+.+.+..+.-|.+.+-
T Consensus 251 ~~~~l~~~~~n~~N~ys~~l~l~~l~~-~~~~~~~~~i---~~ii-~~~l~~~~---~~~~f~~FL~~lg~~~~P~~gI~ 322 (386)
T TIGR02358 251 LIILLSTVTTTFMDIYSAAISTGNLLP-RLKVKHLAIG---VGVL-GTLIALLF---PVDKYENFLLLIGSVFAPLYAVV 322 (386)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH-hhcchHHHHH---HHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556667788888888887773 3333322222 2222 12222221 13456777778888888888777
Q ss_pred HH
Q 016122 263 LL 264 (394)
Q Consensus 263 Ll 264 (394)
+-
T Consensus 323 i~ 324 (386)
T TIGR02358 323 FV 324 (386)
T ss_pred HH
Confidence 65
No 38
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=90.96 E-value=3.4 Score=42.60 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhh-HhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChHH-
Q 016122 166 SFLLRNVLGSWSSKLFAIALLASGQSST-ITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQ- 243 (394)
Q Consensus 166 ~~~L~~~~G~~a~~ifaigLlaAg~sSt-it~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~- 243 (394)
.+.++...+..+..+.++.+..++..+. ..+.|++....+..+++|.+++.+....-.+ ++..+...-......
T Consensus 272 ~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~ 347 (440)
T PF02133_consen 272 LQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNIFPKRISRRRGVIIVGVI----GIAIAPWGLLGNFSFL 347 (440)
T ss_dssp HHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCCSTTT--HHHHHHHHHHH----HHCT-GGGTCCCCHC-
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHccceeecchHHHHHHHHH----HHHHHHHHHHhchhhh
Confidence 3444444444344444544555555554 3567888888888877555554443322222 111121111112223
Q ss_pred HHHHHHHHHHhhhhhHHHHHH
Q 016122 244 LIIIASMILSFELPFALVPLL 264 (394)
Q Consensus 244 Lli~~qvl~sl~LPfalipLl 264 (394)
+.++.+.+..+.-|++.+-+.
T Consensus 348 f~~fL~~lg~~~~P~~gI~i~ 368 (440)
T PF02133_consen 348 FTNFLSLLGYFLGPWAGIMIA 368 (440)
T ss_dssp ---HCCCCCHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHH
Confidence 566666777888888877774
No 39
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=90.67 E-value=25 Score=37.20 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHhhhhhhHhhhhhHHHHHh
Q 016122 175 SWSSKLFAIALLASGQSSTITGTYAGQYVMQ 205 (394)
Q Consensus 175 ~~a~~ifaigLlaAg~sStit~t~agq~vm~ 205 (394)
++...+.++.++.+..++..+..++....+.
T Consensus 280 ~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~ 310 (507)
T TIGR00910 280 EWLVKVIAALIAFGVLAEIASWIVGPSRGMF 310 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666665555555555555554443
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=90.16 E-value=26 Score=36.45 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 175 SWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 175 ~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
++...+..++.+.+.+++..+..+++......+
T Consensus 287 ~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ 319 (478)
T TIGR00913 287 KVLPHIFNAVILISVLSAANSSLYASSRTLYAL 319 (478)
T ss_pred chHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567777778888888888877777777655444
No 41
>PRK11021 putative transporter; Provisional
Probab=89.84 E-value=25 Score=35.81 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
....++..+|+++..+..+..+.+.+++..+..++....+...
T Consensus 248 ~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ 290 (410)
T PRK11021 248 LPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQ 290 (410)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889887778888777787887776666655444333
No 42
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=89.37 E-value=28 Score=35.76 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhh--HHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhh
Q 016122 164 KASFLLRNVLGS--WSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 208 (394)
Q Consensus 164 ~a~~~L~~~~G~--~a~~ifaigLlaAg~sStit~t~agq~vm~gfl 208 (394)
...+..+..+|+ +...+..+..+.+..+|..+..+++.....+.-
T Consensus 261 p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~a 307 (442)
T TIGR00908 261 PLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALS 307 (442)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666663 444455555555556666666666665544443
No 43
>PRK10484 putative transporter; Provisional
Probab=88.97 E-value=35 Score=36.30 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhhc
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFLD 209 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl~ 209 (394)
......+.++++..-++..|++||.+|+.-+.-.+.. ...++..+
T Consensus 316 ~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~s~st~~t~Diy~ 361 (523)
T PRK10484 316 YPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIYK 361 (523)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445667788888889999999999988544443333 34456554
No 44
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=88.60 E-value=35 Score=35.88 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=30.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhhc
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFLD 209 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl~ 209 (394)
...+..+.++-.-++..|+++|..|+.-+.-.+.. .+.++..+
T Consensus 309 ~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy~ 352 (487)
T TIGR02121 309 VLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSALTEDFYK 352 (487)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888889999999999998765555444 45566653
No 45
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=87.56 E-value=39 Score=35.21 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChHH
Q 016122 164 KASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQ 243 (394)
Q Consensus 164 ~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~ 243 (394)
=.++.=+..||+.+..+.++-...|....++.-+-+. .||++.+.++..++-..... .+++..++- .+..+
T Consensus 264 IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~----aefF~~~~p~~SY~~~v~if-~i~sflvan----~GL~~ 334 (431)
T COG1114 264 ILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVAC----AEFFSKLVPKLSYKTWVIIF-TLISFLVAN----LGLEQ 334 (431)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcccccHHHHHHHH-HHHHHHHHH----hhHHH
Confidence 3455667889999999999999999887766555544 47877665544433222222 223333332 45778
Q ss_pred HHHHHHHHHHhhhhhHHHH
Q 016122 244 LIIIASMILSFELPFALVP 262 (394)
Q Consensus 244 Lli~~qvl~sl~LPfalip 262 (394)
++.++-=++.+.=|.++.-
T Consensus 335 Ii~isvPvL~~iYPiaI~L 353 (431)
T COG1114 335 IIKISVPVLTAIYPIAIAL 353 (431)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 8777666667777777543
No 46
>TIGR00909 2A0306 amino acid transporter.
Probab=87.48 E-value=36 Score=34.69 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhc
Q 016122 166 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLD 209 (394)
Q Consensus 166 ~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~ 209 (394)
....+...|+++..+..++...+.+++..+..++....+..+-+
T Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 267 SLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555677888888888999999999988888888876665544
No 47
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=86.91 E-value=44 Score=35.09 Aligned_cols=38 Identities=13% Similarity=-0.076 Sum_probs=22.1
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 169 LRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 169 L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
.+..+| .+..+..+....+.+++..+..+++...+..+
T Consensus 310 ~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ 347 (501)
T TIGR00911 310 GERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVG 347 (501)
T ss_pred HHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556 44455556666666777766666666554444
No 48
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=86.86 E-value=42 Score=34.89 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=34.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
....++..+|+++..+..++.+.+.+++..+.++++...+-.+
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ 308 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLM 308 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999888888887554433
No 49
>PRK11017 codB cytosine permease; Provisional
Probab=86.67 E-value=41 Score=34.54 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Q 016122 243 QLIIIASMILSFELPFALVPLLK 265 (394)
Q Consensus 243 ~Lli~~qvl~sl~LPfalipLl~ 265 (394)
.+..+.+.+..+.-|.+-+-+.-
T Consensus 312 ~~~~FL~~lg~~l~P~~gI~i~D 334 (404)
T PRK11017 312 NFVGWLTLLGSAIPPVGGVIIAD 334 (404)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhh
Confidence 45566667777777887777643
No 50
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=86.36 E-value=51 Score=35.36 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhccchH
Q 016122 2 LFKIPVWIGVLLTGFSTLILLALQQYGVR 30 (394)
Q Consensus 2 LfgiPl~~gvlit~~~t~~lL~l~~~g~r 30 (394)
++|+|.|.++++++..+.+...+ .|+|
T Consensus 175 ~~gi~~~~~iii~~~i~~~Yt~~--GGm~ 201 (549)
T TIGR02711 175 LFGLNYHVAVVLVGILMVMYVLF--GGML 201 (549)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHh--hhhH
Confidence 47999999999999877766554 3553
No 51
>PRK10238 aromatic amino acid transporter; Provisional
Probab=84.78 E-value=53 Score=34.12 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=27.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhh
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 208 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl 208 (394)
+.++..-+++...+..+.++.+.+++..+..+++...+-.+-
T Consensus 273 ~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~a 314 (456)
T PRK10238 273 LIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLA 314 (456)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555456666677777777778877777777776554443
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=83.83 E-value=8.3 Score=40.15 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=28.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHH
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQY 202 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~ 202 (394)
...+..-+++...++.++.+.+.+++.....+++..
T Consensus 278 ~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR 313 (478)
T PF00324_consen 278 IAAQYSGGPWLAWIVNAGILISAFSSANASLYAASR 313 (478)
T ss_pred hhhhhcccccccceecccchhhhhhhhhhhhcccce
Confidence 344555567888899999999999998888887773
No 53
>PRK10836 lysine transporter; Provisional
Probab=82.36 E-value=68 Score=33.58 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=27.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
..+++.-++++..+..+.++.+..++.....+++....-.+
T Consensus 286 ~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~ 326 (489)
T PRK10836 286 LVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTL 326 (489)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444566677777777788888887778777554444
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=80.67 E-value=10 Score=40.55 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhhHHH----HHHHHHHHHhhhhhhHhhhhhHH-HHHhhhhcCCccchhhhhhhh--------hhh-HHH
Q 016122 163 NKASFLLRNVLGSWSS----KLFAIALLASGQSSTITGTYAGQ-YVMQGFLDLRLKPWLRNFLTR--------CLA-IVP 228 (394)
Q Consensus 163 ~~a~~~L~~~~G~~a~----~ifaigLlaAg~sStit~t~agq-~vm~gfl~~~~~~~~r~l~tr--------~ia-iiP 228 (394)
+...+.+.+..|+-+. -+-.+.++..|++|..+.+-.-. +.-+|.+.. ++|.|+.=.+ .+. ++-
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~--S~~~~~v~~~t~~P~nAv~l~~i~s 402 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPF--SKYLAKVNPQTKVPLNAVLLSCIIS 402 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCC--cceeeecCCCCCCcHHHHHHHHHHH
Confidence 3567788888887543 24556677777777654443322 333454433 2322221111 111 111
Q ss_pred HHHHHH-hcCCcChHHHHHHHHHHHHhhhhhHHHH--HHHHhcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 016122 229 SLIVAL-IGGSAGAGQLIIIASMILSFELPFALVP--LLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYL 301 (394)
Q Consensus 229 al~v~~-~~g~~~~~~Lli~~qvl~sl~LPfalip--Ll~~~s~~~iMG~~~n~~~~~il~~~~~~~i~~lni~~v 301 (394)
.++..+ +.+....+.+...+ +-...+-.+.-- -+.+.+|+=..|++.-+++.+...++..+.....-+.+.
T Consensus 403 ~llgll~L~s~~Af~Alfs~a--~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~ 476 (550)
T KOG1289|consen 403 ILLGLLILASATAFNALFSAA--AIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSKPIGIIAVLWVLFMIVILC 476 (550)
T ss_pred HHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHhHHhheeecccccCCCCccccccccchHHHHHHHHHHHHHHHh
Confidence 122222 22222222222221 112222222211 223333334567888888888888877555555444443
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=79.63 E-value=81 Score=32.67 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=35.0
Q ss_pred hhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhHHHHHH
Q 016122 192 STITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLL 264 (394)
Q Consensus 192 Stit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfalipLl 264 (394)
......|++...++..+..+. +++| . +....++ +++++...-......+..+...+..+.-|.+.+-+.
T Consensus 311 ~~~~N~ys~~l~l~~l~~~~~-~~~r-~-~~i~~ii-~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~l~ 379 (442)
T TIGR00800 311 NISANSYSAGLDIAALLPKYI-KIKR-G-SLICAII-ALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVMIA 379 (442)
T ss_pred HHHhhccchHHHHHHhCcCcc-ccch-H-HHHHHHH-HHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667788787877775432 2222 1 1111111 111111110011224666777778888888877765
No 56
>PRK09395 actP acetate permease; Provisional
Probab=79.44 E-value=94 Score=33.32 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=21.5
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhccchHH
Q 016122 2 LFKIPVWIGVLLTGFSTLILLALQQYGVRK 31 (394)
Q Consensus 2 LfgiPl~~gvlit~~~t~~lL~l~~~g~rk 31 (394)
++|+|.|.++++.++.+.+...+ .|+|-
T Consensus 177 ~~gi~~~~~ili~~~i~~iYt~~--GGm~a 204 (551)
T PRK09395 177 LFGLNYHVAVVLVGVLMMVYVLF--GGMLA 204 (551)
T ss_pred HhCCCHHHHHHHHHHHHHHHHhh--cchHH
Confidence 46999999999999877766554 46655
No 57
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=77.48 E-value=32 Score=33.75 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCCCChHHHHHHHhhchhhhHHHHHhhhhhhhccCCC
Q 016122 27 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPR 106 (394)
Q Consensus 27 ~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~~~~~~avaivGatImPhnlflhS~lv~~R~~~~ 106 (394)
|||.|+|.+...+.+++.+...+..+. |-.+.++-|.-+........++.++..+......++.... |+.
T Consensus 73 yG~~r~E~l~~l~~~~~l~~~~~~~~~------esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~--~~~-- 142 (299)
T PRK09509 73 FGHGKAESLAALAQSMFISGSALFLFL------TGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWVV--RKT-- 142 (299)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--HHh--
Confidence 689999999887666544333223322 1222233344332223334556666555543222221111 111
Q ss_pred ChhhHHHHHHHHHHHHHHHH
Q 016122 107 SVRSIKEACRFYMIESGFAL 126 (394)
Q Consensus 107 ~~~~ik~a~~~~~ids~ial 126 (394)
+...++..-+.++.|...+.
T Consensus 143 ~s~~l~a~~~~~~~D~~~s~ 162 (299)
T PRK09509 143 QSQAVRADMLHYQSDVMMNG 162 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 12235555667788887654
No 58
>PRK10249 phenylalanine transporter; Provisional
Probab=77.48 E-value=94 Score=32.26 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhh
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 208 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl 208 (394)
....++...+++...+..+..+.+..++..+..+++...+..+-
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~a 323 (458)
T PRK10249 280 FVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLS 323 (458)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555677777777777788888888777777776554443
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=77.05 E-value=81 Score=32.01 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=61.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcC-CcChHHHH
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGG-SAGAGQLI 245 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g-~~~~~~Ll 245 (394)
+.++.++|++.+.++=+.+...-++++++...++....|+.+|+ +.|.-.++.-+ .+.++.+.+ .++ +.
T Consensus 70 ~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--P~wiGali~i~-----~v~i~lfl~~veg---i~ 139 (349)
T COG3949 70 EILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--PYWIGALIIIL-----LVLILLFLGRVEG---II 139 (349)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--cHHHHHHHHHH-----HHHHHHHHhcccc---ee
Confidence 56888999999999999999999999998888888889998876 46765443211 122233333 222 22
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhc
Q 016122 246 IIASMILSFELPFALVPLLKFTS 268 (394)
Q Consensus 246 i~~qvl~sl~LPfalipLl~~~s 268 (394)
-++++..|+..+.++..++
T Consensus 140 ----tvn~iI~P~LIi~l~~v~~ 158 (349)
T COG3949 140 ----TVNGIITPFLIIILVLVTL 158 (349)
T ss_pred ----eeheeHHHHHHHHHHHHHH
Confidence 2478889998888665443
No 60
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=76.84 E-value=97 Score=32.06 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=28.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhh
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 208 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl 208 (394)
..++..-|+++..+..++.+.+.+++..+..+++...+-.+-
T Consensus 255 ~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~a 296 (446)
T PRK10197 255 SVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLS 296 (446)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777777777777777777776554443
No 61
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=75.37 E-value=1.1e+02 Score=31.91 Aligned_cols=30 Identities=7% Similarity=-0.083 Sum_probs=20.9
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 016122 272 KMGMHANSIAITAITWIIGSLIMIINVYYL 301 (394)
Q Consensus 272 iMG~~~n~~~~~il~~~~~~~i~~lni~~v 301 (394)
.-|+|+-+++-..+.++..+.++...+.+.
T Consensus 412 ~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~ 441 (475)
T TIGR03428 412 PAGLFSLGRWGLPVNILAVVYGALMVVNLS 441 (475)
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 557899998877777777666665555444
No 62
>PRK03557 zinc transporter ZitB; Provisional
Probab=74.76 E-value=42 Score=33.26 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCCCChHHHHHHHhhchhhhHHHHHhhhhhhhccCCC
Q 016122 27 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPR 106 (394)
Q Consensus 27 ~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~~~~~~avaivGatImPhnlflhS~lv~~R~~~~ 106 (394)
|||.|+|.+...+.+++.+...+..+. |-.+.++-|..+. .....+++++|..+.-...++ ..|+...
T Consensus 81 yG~~r~E~l~al~~~~~l~~~~~~i~~------eai~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~ 148 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIALVVITILIVW------EAIERFRTPRPVA-GGMMMAIAVAGLLANILSFWL-----LHHGSEE 148 (312)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHcCCcccc-chHHHHHHHHHHHHHHHHHHH-----Hhccccc
Confidence 799999999887666544433333332 2223333444332 223334444443332111111 1121111
Q ss_pred ChhhHHHHHHHHHHHHHHHHH
Q 016122 107 SVRSIKEACRFYMIESGFALA 127 (394)
Q Consensus 107 ~~~~ik~a~~~~~ids~ial~ 127 (394)
++..++..-+..+.|+..+..
T Consensus 149 ~s~~l~a~~~h~~~D~l~s~~ 169 (312)
T PRK03557 149 KNLNVRAAALHVLGDLLGSVG 169 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 222455556778888855443
No 63
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=70.79 E-value=1.3e+02 Score=30.89 Aligned_cols=37 Identities=16% Similarity=-0.022 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ 201 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq 201 (394)
..+.++..+|++...+..++...+.+++..+.++++.
T Consensus 262 ~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~s 298 (445)
T PRK10644 262 FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAG 298 (445)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777889888777777777666666544444444
No 64
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=69.21 E-value=1.7e+02 Score=31.48 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
.+++..-++++..+..+|.+.+-.++..+..++...++-..
T Consensus 303 ~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~am 343 (557)
T TIGR00906 303 VAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAM 343 (557)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454444678888999998888888887777766544333
No 65
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=68.52 E-value=1.5e+02 Score=30.56 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=24.7
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhh
Q 016122 169 LRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 208 (394)
Q Consensus 169 L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl 208 (394)
++...++++..+..+..+.+..++.....+++...+-.+-
T Consensus 277 ~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~a 316 (452)
T TIGR01773 277 LELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLA 316 (452)
T ss_pred HHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444446677776666666777776666666665554443
No 66
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=68.39 E-value=1.7e+02 Score=31.07 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHH-HHhhhh
Q 016122 164 KASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQY-VMQGFL 208 (394)
Q Consensus 164 ~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~-vm~gfl 208 (394)
.........+++|..-+...++++|.+|+....-.+... ..++..
T Consensus 313 ~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~t~Diy 358 (493)
T COG0591 313 VFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLVASSAITRDIY 358 (493)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445667788899999999999999999987655554442 334443
No 67
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=67.54 E-value=1.1e+02 Score=28.89 Aligned_cols=18 Identities=28% Similarity=0.336 Sum_probs=14.1
Q ss_pred cchHHHHHHHHHHHHHHH
Q 016122 27 YGVRKLEFLIAFLVFTMA 44 (394)
Q Consensus 27 ~g~rklE~~~~~Lv~im~ 44 (394)
||+.|+|.+...+.++..
T Consensus 52 yG~~r~E~l~~l~~~~~l 69 (268)
T TIGR01297 52 FGHGRAEILAALLNGLFL 69 (268)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 799999999887665533
No 68
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=64.79 E-value=1.8e+02 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHhhhhhhHhhhhhHH
Q 016122 175 SWSSKLFAIALLASGQSSTITGTYAGQ 201 (394)
Q Consensus 175 ~~a~~ifaigLlaAg~sStit~t~agq 201 (394)
++...+..+++..+.+++..+..++..
T Consensus 278 ~~~~~i~~~~~~~~~l~~~~~~~~~~s 304 (474)
T TIGR03813 278 SWLGPILAFALAIGVLAGVVTWVAGPS 304 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456566666655555555544434433
No 69
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=62.81 E-value=95 Score=30.80 Aligned_cols=93 Identities=19% Similarity=0.146 Sum_probs=52.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCCCChHHHHHHHhhchhhhHHHHHhhhhhhhccCC
Q 016122 26 QYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIP 105 (394)
Q Consensus 26 ~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~~~~~~avaivGatImPhnlflhS~lv~~R~~~ 105 (394)
.||+.|.|.+...+++++.+...++.+. +-.+-++.|+.+........+++++..++-+...+.-... |+.
T Consensus 74 pyGh~k~E~l~sl~~~~~i~~~g~~i~~------~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~--kk~- 144 (304)
T COG0053 74 PYGHGKAETLASLIVSILIFAAGFEILL------EAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVG--KKT- 144 (304)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-
Confidence 3899999999988777766655555543 2222234466555455667788888877655443321111 221
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH
Q 016122 106 RSVRSIKEACRFYMIESGFALAV 128 (394)
Q Consensus 106 ~~~~~ik~a~~~~~ids~ial~v 128 (394)
++ ..++..-..++-|...++.+
T Consensus 145 ~S-~aL~Ada~h~~sD~~ts~~~ 166 (304)
T COG0053 145 NS-QALIADALHHRSDVLTSLAV 166 (304)
T ss_pred CC-HHHHHHhHHHHHHHHHHHHH
Confidence 12 12333345566677665544
No 70
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=59.48 E-value=2.3e+02 Score=29.71 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHhhhhcCCcc-----chhhhhhhhhhhHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhHHHHHHHHhcCCcccCCCC
Q 016122 203 VMQGFLDLRLK-----PWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHA 277 (394)
Q Consensus 203 vm~gfl~~~~~-----~~~r~l~tr~iaiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iMG~~~ 277 (394)
.+|...+.+.+ .-..|.+.|..-.+++..++... +..++++.........-+.+.+=++.++.- +.+-++.
T Consensus 330 ~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~--PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~--~k~~~~s 405 (437)
T KOG1303|consen 330 VVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSF--PFFGDLLSLVGAFLFWPLTFILPCLMYLLI--KKPKRFS 405 (437)
T ss_pred HHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhc--cccHhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhh
Confidence 56777776554 12245678877777777777654 334456655555555555555544555433 2223344
Q ss_pred chHHHHHHH
Q 016122 278 NSIAITAIT 286 (394)
Q Consensus 278 n~~~~~il~ 286 (394)
.+|+.+...
T Consensus 406 ~~~~~~~~~ 414 (437)
T KOG1303|consen 406 PKWLLNWVI 414 (437)
T ss_pred HHHHHHHHh
Confidence 444444433
No 71
>PRK10655 potE putrescine transporter; Provisional
Probab=58.69 E-value=2.2e+02 Score=29.13 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHh
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQ 205 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~ 205 (394)
.++.++..+|++...+..++...+.+++..+..+++..++.
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~ 300 (438)
T PRK10655 260 FGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFK 300 (438)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888766666666666666666555555554443
No 72
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=55.75 E-value=85 Score=31.25 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCCCChHHHHHHHhhchhhhHHHHHhhhhhhhccCCC
Q 016122 27 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPR 106 (394)
Q Consensus 27 ~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~~~~~~avaivGatImPhnlflhS~lv~~R~~~~ 106 (394)
|||+|+|-+.+..-+++.++-..-.. | |..+-++-|..... ...+.+|++|=++---..| ...|+ +.
T Consensus 84 fGy~R~eiLaa~~nav~Li~~s~~I~-----~-EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~-----ll~~~-~~ 150 (296)
T COG1230 84 FGYKRLEILAAFLNALLLIVVSLLIL-----W-EAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSAL-----LLHKG-HE 150 (296)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHhcCCCCCCc-cchHHHHHHHHHHHHHHHH-----HhhCC-Cc
Confidence 79999999887644443322221111 1 33344455664432 3456777777665332222 22233 22
Q ss_pred ChhhHHHHHHHHHHHHHHH
Q 016122 107 SVRSIKEACRFYMIESGFA 125 (394)
Q Consensus 107 ~~~~ik~a~~~~~ids~ia 125 (394)
++.++|-+.-..+-|+.-+
T Consensus 151 ~~lN~r~a~LHvl~D~Lgs 169 (296)
T COG1230 151 ENLNMRGAYLHVLGDALGS 169 (296)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 2345666666666666543
No 73
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=50.68 E-value=3.5e+02 Score=29.04 Aligned_cols=246 Identities=18% Similarity=0.218 Sum_probs=109.4
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHHHHhhc----CCCHh-hhhccccccc-----
Q 016122 2 LFKIPVWIGVLLTGFSTLILLALQQYGVRKL--EFLIAFLVFTMAGCFFAELGYA----KPEAK-EVLHGLFVPQ----- 69 (394)
Q Consensus 2 LfgiPl~~gvlit~~~t~~lL~l~~~g~rkl--E~~~~~Lv~im~l~F~~~~~~~----~P~~~-~v~~Gl~vP~----- 69 (394)
++|+|.++|+.+.+....+...+ .|++-. -.+++..+.+.+..+...+... +|... +.... ..|.
T Consensus 149 l~gv~~~vgv~ig~ilm~~Yvv~--GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~-~~~~~~~~~ 225 (529)
T COG4147 149 LLGVPYHVGVVIGGILMMVYVVL--GGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVT-VHPKDDGSD 225 (529)
T ss_pred HhCCCceeehhhHhHHHHHHHHh--cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhh-cCcccCccc
Confidence 68999999999988776655554 344332 2233333223222222222221 23321 11111 1211
Q ss_pred --cCCC------ChHHHHHH-HhhchhhhHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 016122 70 --LKGN------GATGLAIS-LLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFAL--AVAFLINVSVIS 138 (394)
Q Consensus 70 --~~~~------~~~~~ava-ivGatImPhnlflhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial--~vs~lIn~aIv~ 138 (394)
-|+. +.+.+..+ .+|+.=+||.+- |-.+.++ .||| |....-++ ..-|=+...++.
T Consensus 226 ~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~--------RFfTvp~--~k~A----R~Sv~wA~~fIg~fYi~~~~ig 291 (529)
T COG4147 226 IMEPGLLYKDPIDFISLGFALMVGTAGLPHILM--------RFFTVPD--AKEA----RKSVFWATGFIGIFYILTPIIG 291 (529)
T ss_pred ccCCCCcccCHHHHHHHHHHHHHccCCCCeEEE--------EEEecCc--HHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1221 12223333 478888999752 5443332 3443 33333333 223344455555
Q ss_pred HHHhhhccCCCCCC-----------Ccccccccch-HHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhHhhhhhHHHHH
Q 016122 139 VSGAVCSSSNINPE-----------DQASCKDLDL-NKASFLLRNVLG--SWSSKLFAIALLASGQSSTITGTYAGQYVM 204 (394)
Q Consensus 139 v~A~v~~~~g~~~~-----------~~~~~~~~~l-~~a~~~L~~~~G--~~a~~ifaigLlaAg~sStit~t~agq~vm 204 (394)
.+|..+-.++.... |.+......- ++++-++.|..| +|-..+-+.|-+|+..|..-.-+++.....
T Consensus 292 ~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasav 371 (529)
T COG4147 292 AGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAV 371 (529)
T ss_pred HHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55554434332221 2221111222 567777777777 455556666666666665433333333211
Q ss_pred -----hhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChH---HHHHHH-HHHHHhhhhhHHHHHHH
Q 016122 205 -----QGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAG---QLIIIA-SMILSFELPFALVPLLK 265 (394)
Q Consensus 205 -----~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~---~Lli~~-qvl~sl~LPfalipLl~ 265 (394)
...++.+-++..|....|....+ ..+++.+.+...++ ++.-++ .+.-|-.+|..+.-+++
T Consensus 372 sHDiY~~vik~~ase~~~v~vaRi~~v~-~~vva~~lgi~~~gnVaflVa~AF~lAaSa~fPvivlglfW 440 (529)
T COG4147 372 SHDLYAMVIKKGATEKKEVRVARIAVVI-LGVVAILLGILPPGNVAFLVALAFALAASANFPVIVLGLFW 440 (529)
T ss_pred HhHHHHHHhCCCCCccceehhHHHHHHH-HHHHHHHheecCCccHHHHHHHHHHHHHHcccchhhHHHHH
Confidence 12223333334444455644332 33444444433333 222111 12234445665555544
No 74
>PRK10746 putative transport protein YifK; Provisional
Probab=49.48 E-value=3.2e+02 Score=28.36 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=26.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhh
Q 016122 167 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 208 (394)
Q Consensus 167 ~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl 208 (394)
..++..-.+.+..+..+..+.+.+|+..+..+++...+.+.-
T Consensus 273 ~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a 314 (461)
T PRK10746 273 LTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALA 314 (461)
T ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444345555566666677778887778888776655554
No 75
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=47.12 E-value=77 Score=30.27 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 016122 27 YGVRKLEFLIAFLVFTMAGC 46 (394)
Q Consensus 27 ~g~rklE~~~~~Lv~im~l~ 46 (394)
||+.|+|.+..+..++..+.
T Consensus 61 fG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 61 FGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp SSSTTHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHhhhhhhhhHhh
Confidence 68999999988765554433
No 76
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=44.31 E-value=3.5e+02 Score=27.33 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHH
Q 016122 164 KASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 204 (394)
Q Consensus 164 ~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm 204 (394)
......+...|.+...+..++.+.+.+++..+...+.....
T Consensus 273 p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~ 313 (466)
T COG0531 273 PLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313 (466)
T ss_pred cHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666788888888888888888877777766443
No 77
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=43.94 E-value=1.1e+02 Score=27.02 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=30.7
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 016122 2 LFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 50 (394)
Q Consensus 2 LfgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~ 50 (394)
++++|...+++-..+ -+++|.......+.+|..-..+..-|.+-|+-.
T Consensus 29 ll~lPiPGsViGMlL-L~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 29 FLPIPMPASVIGLVL-LFVLLCTKVVKLEQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HcCCCCcHHHHHHHH-HHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 467788877754433 233333333346678888888888888888733
No 78
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=42.99 E-value=4.7e+02 Score=28.35 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=35.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 016122 5 IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY 53 (394)
Q Consensus 5 iPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~ 53 (394)
+|.|+++.+..+..+++=++.-++|-..|.++..+=.++.+.|++.-+.
T Consensus 158 v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii 206 (541)
T COG0833 158 VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGII 206 (541)
T ss_pred CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHH
Confidence 6899999888877777766677789999998876544555555544433
No 79
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=39.99 E-value=4.2e+02 Score=26.99 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016122 317 VEVVFLGIFGFSAMAVYLAGVAYLVLRKNK 346 (394)
Q Consensus 317 ~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~ 346 (394)
....+..+++.+..+.|....-|....|.+
T Consensus 310 ~~m~i~~lv~lPivL~Y~~~~Y~vF~gk~~ 339 (346)
T COG1294 310 SVMLVVALVFLPIVLAYTIWSYRVFRGKIT 339 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344555567778888998887666665533
No 80
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.77 E-value=2.3e+02 Score=26.21 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=27.9
Q ss_pred HHhhhhhHHHHHHHHhcCCcccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 016122 252 LSFELPFALVPLLKFTSSKVKMG-MHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLG 323 (394)
Q Consensus 252 ~sl~LPfalipLl~~~s~~~iMG-~~~n~~~~~il~~~~~~~i~~lni~~v~~~~~~~~~~~~~~~~~~~~~~ 323 (394)
.++...++..-+.++..+. ++ +.|.++|..++..+..++ ..+-++.... +.+...++.++.+..+++|
T Consensus 119 ~~i~~G~~~~~~~~~i~~~--~~~~~r~~~~k~~~~~~~~~~-~w~~~~~~~~-~lp~~inp~l~~~~~iiig 187 (206)
T PF06570_consen 119 VSIVGGLVFYFIFKYIYPY--KKKKKRPSWWKYILISVLAMV-LWIVIFVLTS-FLPPVINPVLPPWVYIIIG 187 (206)
T ss_pred HHHHHHHHHHHHHHHHhcc--cccccccHHHHHHHHHHHHHH-HHHHHHHHHH-HccccCCcCCCHHHHHHHH
Confidence 3444444444444454432 33 245555544443433333 3333333333 3443334444433444443
No 81
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=38.67 E-value=4.2e+02 Score=26.61 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=11.1
Q ss_pred hhhhhhh-hhHHHHHHHHHhcC
Q 016122 217 RNFLTRC-LAIVPSLIVALIGG 237 (394)
Q Consensus 217 r~l~tr~-iaiiPal~v~~~~g 237 (394)
|+.+.|. ..++|.+.+..+..
T Consensus 126 r~~l~~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 126 RRQLRWLIWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444443 44557666665554
No 82
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=37.13 E-value=3.6e+02 Score=25.31 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHhhhhhHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 016122 250 MILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIF 325 (394)
Q Consensus 250 vl~sl~LPfalipLl~~~s~~~iMG~~~n~~~~~il~~~~~~~i~~lni~~v~~~~~~~~~~~~~~~~~~~~~~~~ 325 (394)
++.++.=-|+...+.++.++..--...|.++|.-++....++++. +-++ +.+.+.+-..+..++-.+..++|.+
T Consensus 131 ll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lW-i~v~-i~t~~lPtslN~~L~pi~l~IiGav 204 (226)
T COG4858 131 LLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLW-IAVM-IATVFLPTSLNPQLPPIALTIIGAV 204 (226)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHH-HHHH-HHHhhCCCcCCcCCchHHHHHHHHH
Confidence 345666667777788888765433346666665555555444444 4444 4555666555666665665555544
No 83
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=36.48 E-value=4.3e+02 Score=26.06 Aligned_cols=26 Identities=8% Similarity=-0.120 Sum_probs=18.3
Q ss_pred HHhhhhhhHhhhhhHHHHHhhhhcCC
Q 016122 186 LASGQSSTITGTYAGQYVMQGFLDLR 211 (394)
Q Consensus 186 laAg~sStit~t~agq~vm~gfl~~~ 211 (394)
..+.+.......|++....+..+++|
T Consensus 274 ~~~~f~~~~~~~~~~~~~~~~~~~~~ 299 (359)
T TIGR00912 274 VFIIFVKIAFYLYIAVKGLSKLFKKR 299 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444555567888888888888876
No 84
>PLN03074 auxin influx permease; Provisional
Probab=36.10 E-value=2.7e+02 Score=29.41 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=49.0
Q ss_pred HHhhhhcCC-ccchhhhhhhhhhhHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhHHHHHHHHh---cC--Ccc----
Q 016122 203 VMQGFLDLR-LKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFT---SS--KVK---- 272 (394)
Q Consensus 203 vm~gfl~~~-~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfalipLl~~~---s~--~~i---- 272 (394)
+.|...+.+ .+.+..|...|....+.+.+++... +..+.++.+...+....+-+.+=++.++. +. |+-
T Consensus 336 ~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~I--P~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~ 413 (473)
T PLN03074 336 VWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIF--PFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEK 413 (473)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccC
Confidence 455555433 1223345667877666666666543 34555665555554444444433344432 21 111
Q ss_pred ----cCCCCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 016122 273 ----MGMHANSIAITAITWIIGSLI-MIINVYYLATSFIKF 308 (394)
Q Consensus 273 ----MG~~~n~~~~~il~~~~~~~i-~~lni~~v~~~~~~~ 308 (394)
+|.++-..+.|+...+...++ ++.+.|.-..+++..
T Consensus 414 ~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~ 454 (473)
T PLN03074 414 PPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQ 454 (473)
T ss_pred CcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHh
Confidence 222222224455444433333 346666666655544
No 85
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=36.03 E-value=2.3e+02 Score=24.15 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Q 016122 317 VEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASH 350 (394)
Q Consensus 317 ~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~ 350 (394)
++..++|++.|+ -.+|-..++|.++|..+-.++
T Consensus 77 ~~llilG~L~fI-PG~Y~~~i~y~a~rg~~Gysf 109 (115)
T PF05915_consen 77 WALLILGILCFI-PGFYHTRIAYYAWRGYKGYSF 109 (115)
T ss_pred chHHHHHHHHHh-ccHHHHHHHHHHHcCCCCCCH
Confidence 445555555443 678999999999998765543
No 86
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=35.51 E-value=2.3e+02 Score=27.87 Aligned_cols=104 Identities=20% Similarity=0.252 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHH---HHHHHHHhhcCCCHhhhhccccccccCCCChHHHHHHHhhc
Q 016122 10 GVLLTGFSTLILLALQQYG-VRKLEFLIAFLVFTMA---GCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGA 85 (394)
Q Consensus 10 gvlit~~~t~~lL~l~~~g-~rklE~~~~~Lv~im~---l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~~~~~~avaivGa 85 (394)
.++.|....+..+++.|.| .|.=||+..+++..+. +.++++++. .+..| .+.+.+.+...++++..
T Consensus 150 Avl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl------~lf~~----~l~~~gplgI~~slv~v 219 (274)
T PF12811_consen 150 AVLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIALFYLVNLVL------SLFVG----SLRDGGPLGIGFSLVVV 219 (274)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHHHHHHHHHH------HHHHh----hcccCChHHHHHHHHHH
Confidence 4455554444556666665 4656666654433322 222222221 11112 14444567788899988
Q ss_pred hhhhHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 016122 86 MVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAF 130 (394)
Q Consensus 86 tImPhnlflhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~ 130 (394)
.+--.|+-++=..++ |+.+.+ +=|++-+=.++|+.++.
T Consensus 220 ~iAa~sLllDFd~Ie-~~v~~g------aPk~~eW~~AfGL~vTL 257 (274)
T PF12811_consen 220 GIAALSLLLDFDFIE-QGVRQG------APKKMEWYAAFGLLVTL 257 (274)
T ss_pred HHHHHHHHhhHHHHH-HHHHcC------CChhhHHHHHHHHHHHH
Confidence 888888877654432 332221 12334455677887764
No 87
>COG3368 Predicted permease [General function prediction only]
Probab=32.73 E-value=3e+02 Score=28.99 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 016122 224 LAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLAT 303 (394)
Q Consensus 224 iaiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iMG~~~n~~~~~il~~~~~~~i~~lni~~v~~ 303 (394)
.+..|++.. +.|. ....++-..-.+.++.+-..+..++..--.+++-|+...++-.-.....+..++....+|.+..
T Consensus 114 falLpsivl--~~g~-~~~~LLg~lw~ilaiLmG~sl~~ll~v~fg~ri~gg~S~s~~l~R~~G~l~~lv~v~~i~~I~~ 190 (465)
T COG3368 114 FALLPSIVL--FLGN-IYIGLLGLLWSILAILLGYSLGFLLFVKFGGRIRGGRSLSKNLFRIFGILIFLVFVFLIYGIIA 190 (465)
T ss_pred HHHHHHHHH--HhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeecCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556565443 3332 2334544444566777777777777776777888876665444444444455555555665544
Q ss_pred HHHHhhhcc----c--chhH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 016122 304 SFIKFLFHG----N--LKLV-EVVFLGIFGFSAMAVYLAGVAYLVLRKNKEA 348 (394)
Q Consensus 304 ~~~~~~~~~----~--~~~~-~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~ 348 (394)
+.+..+... + .|.. .....-.=.+.++++|.+...++...-+++.
T Consensus 191 ~~v~~ltP~~~~Y~~v~Pi~~~s~~~~~k~~~lsl~Y~al~~~l~~y~~rk~ 242 (465)
T COG3368 191 LNVYLLTPIFEPYDYVFPIFNISIYFPAKGFILSLLYAALSAFLFLYGNRKL 242 (465)
T ss_pred HhhhhccccCCccceEeeecchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443320 0 0111 1223333456668899988888877666533
No 88
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=29.85 E-value=7e+02 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=25.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 016122 4 KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAF 38 (394)
Q Consensus 4 giPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~ 38 (394)
++|.|+.+++..+....+=+..-+.|-.+|.+++.
T Consensus 124 ~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 124 DVPQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999988776555544445568899998764
No 89
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=29.17 E-value=4.7e+02 Score=24.27 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=26.1
Q ss_pred HHHHhhhhhHHHHHHHHhcCCcccC-CCCchHHHHHHHHHHHHHHHHHHH
Q 016122 250 MILSFELPFALVPLLKFTSSKVKMG-MHANSIAITAITWIIGSLIMIINV 298 (394)
Q Consensus 250 vl~sl~LPfalipLl~~~s~~~iMG-~~~n~~~~~il~~~~~~~i~~lni 298 (394)
++-|+.|||-.+-+.+-.+- +++. .-.+...+.++..+.+++.+.+|-
T Consensus 87 ~iAs~llP~PsLVIaYCl~m-qi~~~~~~~~~gMsIvcv~~Si~ti~~~~ 135 (189)
T PF05313_consen 87 IIASLLLPFPSLVIAYCLSM-QIYNPGANNNVGMSIVCVIMSIITIIVNS 135 (189)
T ss_pred HHHHHHcCccHHHHHHHHHh-eeecCCCcceehhHHHHHHHHHHHHHHHh
Confidence 45689999965544443332 2333 234445556666655555555544
No 90
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=28.91 E-value=4.9e+02 Score=30.21 Aligned_cols=142 Identities=21% Similarity=0.215 Sum_probs=68.4
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccc-cCCCChHHHHHHHh--hchhhhHHHHHhhh
Q 016122 21 LLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQ-LKGNGATGLAISLL--GAMVMPHNLFLHSA 97 (394)
Q Consensus 21 lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~-~~~~~~~~~avaiv--GatImPhnlflhS~ 97 (394)
++|+.+ .|.-=-....+-..|..+|...-.. | ++. +=+-|.+..++|++ ||+||--|.|= .
T Consensus 352 ~lFLgn--~RsAli~~~~lPLS~li~f~~M~~~----------g--i~~NlMSLGGlAIaiG~~VD~AIV~vEN~~r--~ 415 (1027)
T COG3696 352 ALFLGN--FRSALIVIISLPLSLLIAFIVMNFF----------G--ISANLMSLGGLAIAIGAMVDAAIVVVENAHR--R 415 (1027)
T ss_pred HHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHc----------C--CcchhhcccchheeeeeeecceEEeehhHHH--H
Confidence 445545 4655555555566666776644321 1 110 10113345566654 78889999653 3
Q ss_pred hhhhccCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccccccchHHHHHHHHHhhhh
Q 016122 98 LVLSRKIPRSVR--SIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGS 175 (394)
Q Consensus 98 lv~~R~~~~~~~--~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~ 175 (394)
+.+.+. ++.++ .+-++.| |..-+.+.+.+ .|+++++-.|.=+|. -+++++|..
T Consensus 416 L~~~q~-~~~~r~~~I~~a~~----EV~~~v~f~~l---II~vvf~PIFtL~Gv---------------EGklF~Pma-- 470 (1027)
T COG3696 416 LEENQH-TNATRFHVIYDASK----EVGRPVFFGLL---IITVVFLPIFTLTGV---------------EGKLFAPLA-- 470 (1027)
T ss_pred hhhhcc-CCcchHHHHHHHHH----HhhhhHhhhhh---hheeehhhhheeccc---------------cccccchHH--
Confidence 332222 22222 2444444 44555544432 233444433322332 133444442
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhhhHHHHHhh
Q 016122 176 WSSKLFAIALLASGQSSTITGTYAGQYVMQG 206 (394)
Q Consensus 176 ~a~~ifaigLlaAg~sStit~t~agq~vm~g 206 (394)
+-..+++++|...|..-......|.+.|
T Consensus 471 ---~t~~~al~~a~llsiT~iPal~~~~i~~ 498 (1027)
T COG3696 471 ---FTKTYALLAALLLSITFIPALMAYLIRG 498 (1027)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2335566777777755555556666666
No 91
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=27.78 E-value=4.8e+02 Score=27.06 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhhh-HHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCC
Q 016122 162 LNKASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 211 (394)
Q Consensus 162 l~~a~~~L~~~~G~-~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~ 211 (394)
..+.++.++..||+ ..+.+-++..+..-........+++..+++..+|++
T Consensus 106 ~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~ 156 (471)
T TIGR02119 106 AITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLS 156 (471)
T ss_pred CccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34677899999994 456666666655555555555667778888888864
No 92
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=27.48 E-value=2.5e+02 Score=23.42 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCC-CChHHHHHHHhhchhhhHH------HHHhhhhhhhccCCCC
Q 016122 35 LIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKG-NGATGLAISLLGAMVMPHN------LFLHSALVLSRKIPRS 107 (394)
Q Consensus 35 ~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~-~~~~~~avaivGatImPhn------lflhS~lv~~R~~~~~ 107 (394)
.+..+..++.-++..++.+-|-. -|-... -+.+.+++|++|++++--| .+.-+......-...+
T Consensus 6 li~~i~fiiGs~~GL~ySYkKy~---------~P~v~k~iD~~ALv~aiiG~~~~~vn~~~~~~~~~ig~~li~~~~GmR 76 (99)
T PF09877_consen 6 LIYIILFIIGSFLGLEYSYKKYR---------EPFVEKKIDKLALVLAIIGGLILAVNSPSSPILYTIGAFLIGFPLGMR 76 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------cchhhhcccHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHhhhccCC
Confidence 33444555566666666665432 132221 2456788999999864222 2222222222222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 016122 108 VRSIKEACRFYMIESGFALAVAFLI 132 (394)
Q Consensus 108 ~~~ik~a~~~~~ids~ial~vs~lI 132 (394)
. -|.|+|+.+|..+++++
T Consensus 77 P-------GYGr~E~~iG~iiA~l~ 94 (99)
T PF09877_consen 77 P-------GYGRIETVIGLIIALLI 94 (99)
T ss_pred C-------CCCeehhhhhHHHHHHH
Confidence 1 27788899998887664
No 93
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=27.44 E-value=7e+02 Score=25.72 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHh
Q 016122 6 PVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAK 59 (394)
Q Consensus 6 Pl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~ 59 (394)
+..++.++....-..+.+..+ +...|....++..+.++|+...+.--|.|.
T Consensus 127 ~r~~~~lif~~~~~~l~~~~~---~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~ 177 (415)
T COG0814 127 PRKLGSLIFALVLAFLSWLGT---LAVLKITSLLVFGKVIYLVLLVVYLIPHWN 177 (415)
T ss_pred chHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445555444433232344333 566666666667777777777777667763
No 94
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=27.39 E-value=1.3e+02 Score=27.54 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.1
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016122 3 FKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA 54 (394)
Q Consensus 3 fgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~ 54 (394)
||+|......+-++.+=....+.||.++.+-..+..=+++-..+|.+|++..
T Consensus 90 fgi~tivsgfvQGlgaE~vFa~~kyr~~Sl~~~mlagmg~~~~sf~~eyf~~ 141 (192)
T COG4721 90 FGIGTIVSGFVQGLGAEFVFAVTKYRYYSLPVLMLAGMGITLASFVYEYFKL 141 (192)
T ss_pred CCchHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHhhchhHHHHHHHHHHH
Confidence 6777777777777765555556678778887777766777889999999874
No 95
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=26.81 E-value=4.2e+02 Score=28.05 Aligned_cols=120 Identities=13% Similarity=0.190 Sum_probs=63.9
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH---HHHhhhhcCCcc---chhhhhhhhhhhHHHHHHHHHhcCCcChHHH
Q 016122 171 NVLGSWSSKLFAIALLASGQSSTITGTYAGQ---YVMQGFLDLRLK---PWLRNFLTRCLAIVPSLIVALIGGSAGAGQL 244 (394)
Q Consensus 171 ~~~G~~a~~ifaigLlaAg~sStit~t~agq---~vm~gfl~~~~~---~~~r~l~tr~iaiiPal~v~~~~g~~~~~~L 244 (394)
..+....+..++++++.+ -++..- -+++..+..|.+ ++......|+..++-+..++... +++...
T Consensus 317 ~~l~~~Vkl~~ai~I~ls-------~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~i--PnL~~f 387 (449)
T KOG1304|consen 317 EILSQTVKLLLAIAIFLT-------YPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAV--PNLALF 387 (449)
T ss_pred cHHHHHHHHHHHHHHHHc-------CchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHC--CcHHhh
Confidence 445566677788877642 122222 233433333432 23344467776565555555542 445555
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCccc-CCCCchHHHHHHHHHHHHHHHHHHHH
Q 016122 245 IIIASMILSFELPFALVPLLKFTSSKVKM-GMHANSIAITAITWIIGSLIMIINVY 299 (394)
Q Consensus 245 li~~qvl~sl~LPfalipLl~~~s~~~iM-G~~~n~~~~~il~~~~~~~i~~lni~ 299 (394)
+-...+.-+..|-+..=|++.+.-..... |.++-.++.|++..+..++....+.|
T Consensus 388 isLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty 443 (449)
T KOG1304|consen 388 ISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTY 443 (449)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHh
Confidence 55545554444555444555554433333 67788888887666666655555444
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.11 E-value=94 Score=26.85 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhccccc
Q 016122 331 AVYLAGVAYLVLRKNKE 347 (394)
Q Consensus 331 ~~y~~~~~yl~~~~~~~ 347 (394)
++-++++.|+..|..|+
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34456777777777665
No 97
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=25.53 E-value=8.9e+02 Score=26.27 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=65.7
Q ss_pred hHHHH---HHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCC--------ccchhhhhhhhhhhHHHHHHHHHhcCCc---C
Q 016122 175 SWSSK---LFAIALLASGQSSTITGTYAGQYVMQGFLDLR--------LKPWLRNFLTRCLAIVPSLIVALIGGSA---G 240 (394)
Q Consensus 175 ~~a~~---ifaigLlaAg~sStit~t~agq~vm~gfl~~~--------~~~~~r~l~tr~iaiiPal~v~~~~g~~---~ 240 (394)
.++++ ++.++++.+-.|+...+.|++...+-...+-+ .+|+.|.+..-.+.-+.+.+.++..... -
T Consensus 315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~ 394 (554)
T KOG1286|consen 315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATV 394 (554)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchH
Confidence 45777 99999999999999999999997766654432 2233222221111111222323222211 1
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHhcCCcccC------CCCc--hHHHHHHHHHHHHHHHHHHHH
Q 016122 241 AGQLIIIASMILSFELPFALVPLLKFTSSKVKMG------MHAN--SIAITAITWIIGSLIMIINVY 299 (394)
Q Consensus 241 ~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iMG------~~~n--~~~~~il~~~~~~~i~~lni~ 299 (394)
.+.+++.+.+-+-+.=-+..+..+.+..-.+.-| +|++ +++....+.....++.....|
T Consensus 395 f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~ 461 (554)
T KOG1286|consen 395 FNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFY 461 (554)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHh
Confidence 2566666665555544455555555544322222 3555 355555555555544444443
No 98
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=24.58 E-value=8.8e+02 Score=25.89 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhh
Q 016122 172 VLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFL 208 (394)
Q Consensus 172 ~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl 208 (394)
.+.++..-++..|+++|.+|+.-+...+.. ...++..
T Consensus 362 ~lp~~l~gl~~ag~~aA~mSt~~s~l~a~st~~~~Di~ 399 (552)
T TIGR03648 362 GLPYWVIGLVAAGGLAAALSTAAGLLLVISSAISHDLY 399 (552)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778889999999988766555544 3345554
No 99
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=22.40 E-value=7.8e+02 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHhhhhhHH--HHHHH
Q 016122 240 GAGQLIIIASMILSFELPFAL--VPLLK 265 (394)
Q Consensus 240 ~~~~Lli~~qvl~sl~LPfal--ipLl~ 265 (394)
+...++++...+.++..|... .|++.
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345788888888888877764 44444
No 100
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.69 E-value=1.2e+03 Score=26.50 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCC---------------ccchhhhhhhhhhhHHHHHHHHHhcCCcCh
Q 016122 177 SSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR---------------LKPWLRNFLTRCLAIVPSLIVALIGGSAGA 241 (394)
Q Consensus 177 a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~---------------~~~~~r~l~tr~iaiiPal~v~~~~g~~~~ 241 (394)
-+.+-.+|+++++++|++.+-....++.|..-+-+ -.||....+|-++ .-+ +++.|
T Consensus 371 ~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~l----vql-vll~g---- 441 (945)
T KOG1288|consen 371 HPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLL----VQL-VLLWG---- 441 (945)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHH----HHH-HHHHh----
Confidence 34567899999999999999999999888664421 2345544444322 112 22333
Q ss_pred HHHHHHHHHHHH-hhhhhHHH----HHHHHhcCCcccCCCCchHHHHHHH
Q 016122 242 GQLIIIASMILS-FELPFALV----PLLKFTSSKVKMGMHANSIAITAIT 286 (394)
Q Consensus 242 ~~Lli~~qvl~s-l~LPfali----pLl~~~s~~~iMG~~~n~~~~~il~ 286 (394)
++..+++++.. +.+-+..+ .++-++|-++.-..||-=.|.+.+.
T Consensus 442 -~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~Tclv 490 (945)
T KOG1288|consen 442 -DINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLV 490 (945)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHH
Confidence 23333444332 33444332 3556677776666665544444433
No 101
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=20.49 E-value=85 Score=21.31 Aligned_cols=27 Identities=30% Similarity=0.867 Sum_probs=15.4
Q ss_pred hhhhcCCccchhhhhhhhhhhHHHHHHHH
Q 016122 205 QGFLDLRLKPWLRNFLTRCLAIVPSLIVA 233 (394)
Q Consensus 205 ~gfl~~~~~~~~r~l~tr~iaiiPal~v~ 233 (394)
|.+++ ++.||.|+ +|-++|+....+++
T Consensus 10 eryfd-diqkwirn-it~cfal~vv~lvs 36 (40)
T PF13124_consen 10 ERYFD-DIQKWIRN-ITFCFALLVVVLVS 36 (40)
T ss_pred HHHHH-HHHHHHHH-HHHHHHHHHHHHHH
Confidence 34443 36789998 56666654443443
No 102
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=20.30 E-value=9.3e+02 Score=24.58 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ 201 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq 201 (394)
....++...|+++..+..++.+.+..++..+..+...
T Consensus 258 ~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~ 294 (435)
T PRK10435 258 FAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVG 294 (435)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889998888777766677776655555443
Done!