Query 016122
Match_columns 394
No_of_seqs 233 out of 1277
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:15:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 97.8 0.014 4.8E-07 60.1 27.9 105 183-294 304-422 (501)
2 3gia_A Uncharacterized protein 97.6 0.064 2.2E-06 53.1 27.9 41 165-205 260-300 (444)
3 4djk_A Probable glutamate/gamm 97.2 0.17 5.7E-06 51.1 26.1 39 167-205 276-317 (511)
4 3l1l_A Arginine/agmatine antip 96.8 0.49 1.7E-05 46.6 31.7 43 165-207 262-304 (445)
5 2a65_A Leutaa, Na(+):neurotran 95.7 2.1 7.1E-05 44.3 23.1 170 26-210 184-373 (519)
6 3dh4_A Sodium/glucose cotransp 93.7 4.9 0.00017 41.2 19.8 39 171-209 315-354 (530)
7 2xq2_A Sodium/glucose cotransp 69.1 1.1E+02 0.0037 31.5 27.3 38 171-208 344-382 (593)
8 3h90_A Ferrous-iron efflux pum 56.0 27 0.00093 32.4 7.4 22 27-48 66-87 (283)
9 3j1z_P YIIP, cation efflux fam 50.5 29 0.00098 32.8 6.7 20 27-46 75-94 (306)
10 2xq2_A Sodium/glucose cotransp 11.4 8.2E+02 0.028 24.8 9.3 48 164-211 113-161 (593)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.81 E-value=0.014 Score=60.12 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=54.9
Q ss_pred HHHHHhhhhhhHh-hhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhHHH
Q 016122 183 IALLASGQSSTIT-GTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALV 261 (394)
Q Consensus 183 igLlaAg~sStit-~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfali 261 (394)
+.++.+..+.... +.|++...++......++++...+ .++++ +.+++. .+ ....+..+...+..+.-|...+
T Consensus 304 ~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~~~~~~---i~~vi-~~~i~~-~~--~~~~f~~FL~~lg~~l~P~~gI 376 (501)
T 2jln_A 304 VFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVI---VSAVV-GLLMMP-WQ--FAGVLNTFLNLLASALGPLAGI 376 (501)
T ss_dssp HHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCHHHHHH---HHHHH-HHHTCG-GG--THHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhCccccchhHHHH---HHHHH-HHHHHH-HH--hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555565564 789988888888654323221111 11111 111111 11 2356777888888888898888
Q ss_pred HHHHH--hcCCcc--------cCCC---CchHHHHHHHHHHHHHHH
Q 016122 262 PLLKF--TSSKVK--------MGMH---ANSIAITAITWIIGSLIM 294 (394)
Q Consensus 262 pLl~~--~s~~~i--------MG~~---~n~~~~~il~~~~~~~i~ 294 (394)
-+.=+ .+++++ -|+| +.-.|.-+++|++..++.
T Consensus 377 ~l~Dy~i~rr~~~~~~~l~~~~g~y~y~~g~n~~a~~a~~~G~~~~ 422 (501)
T 2jln_A 377 MISDYFLVRRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVS 422 (501)
T ss_dssp HHHHHHTTSTTCCCHHHHTBSSSTTCTBTTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCChHHhhCCCCccccCCCCCHHHHHHHHHHHHHH
Confidence 76522 233322 1334 222345566666655443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.57 E-value=0.064 Score=53.12 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHh
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQ 205 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~ 205 (394)
..+..++..|++...+..++.+.+.+++..+..+++...+.
T Consensus 260 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~ 300 (444)
T 3gia_A 260 LAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAY 300 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899988999999999999998888887665443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.20 E-value=0.17 Score=51.09 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=27.0
Q ss_pred HHHHHhhh---hHHHHHHHHHHHHhhhhhhHhhhhhHHHHHh
Q 016122 167 FLLRNVLG---SWSSKLFAIALLASGQSSTITGTYAGQYVMQ 205 (394)
Q Consensus 167 ~~L~~~~G---~~a~~ifaigLlaAg~sStit~t~agq~vm~ 205 (394)
.......| ++...+..++.+.+.+++..+..++....+.
T Consensus 276 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 317 (511)
T 4djk_A 276 TVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMY 317 (511)
T ss_dssp HHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTC
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455 6778888888888888888777777765443
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.76 E-value=0.49 Score=46.56 Aligned_cols=43 Identities=14% Similarity=-0.039 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhh
Q 016122 165 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 207 (394)
Q Consensus 165 a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gf 207 (394)
..+..+...|++...+..++.+.+.+++..+..+++.......
T Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ 304 (445)
T 3l1l_A 262 FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAA 304 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999988888877654443
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.70 E-value=2.1 Score=44.25 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=80.5
Q ss_pred ccch-HHHHHHHHHHHHHHHHHHHHHHhhc----CCC--HhhhhccccccccCCC---ChHHHHHHH------hhchhhh
Q 016122 26 QYGV-RKLEFLIAFLVFTMAGCFFAELGYA----KPE--AKEVLHGLFVPQLKGN---GATGLAISL------LGAMVMP 89 (394)
Q Consensus 26 ~~g~-rklE~~~~~Lv~im~l~F~~~~~~~----~P~--~~~v~~Gl~vP~~~~~---~~~~~avai------vGatImP 89 (394)
.+|. |-.||+..+++....+.+++.++.+ +|+ ..|=++-++.|..+.- ..+..|.+= +|. -
T Consensus 184 ~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~---G 260 (519)
T 2a65_A 184 IRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGF---G 260 (519)
T ss_dssp TTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTS---S
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHH---h
Confidence 3577 4488887776555444444433332 333 4444455567765431 112222221 111 1
Q ss_pred HHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-CCCc-ccc-cccchHHHH
Q 016122 90 HNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNIN-PEDQ-ASC-KDLDLNKAS 166 (394)
Q Consensus 90 hnlflhS~lv~~R~~~~~~~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~A~v~~~~g~~-~~~~-~~~-~~~~l~~a~ 166 (394)
-++-+.|+.- | +++-.|++......|+.+++..++.|-... .+.+ .|.+ +++- +.. ...-.....
T Consensus 261 ~~ity~SY~~--~----~~n~~~~a~~v~~~n~~~sllaG~~IF~~l--gf~a----~g~~~~~~v~~~G~pgL~Fi~~P 328 (519)
T 2a65_A 261 AIITYASYVR--K----DQDIVLSGLTAATLNEKAEVILGGSISIPA--AVAF----FGVANAVAIAKAGAFNLGFITLP 328 (519)
T ss_dssp HHHHHHTTSC--T----TSCCHHHHHHHHHHHHHHHHTTHHHHHHHH--HHHH----HCHHHHHHHHHHCSSHHHHTHHH
T ss_pred HHhhhhcccC--C----CcChHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHh----cCCcchHHHhcCCCCceeHHHHH
Confidence 1222334321 1 112367888889999999887765443211 1111 1221 1000 000 001111222
Q ss_pred HHHHHh-hhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcC
Q 016122 167 FLLRNV-LGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDL 210 (394)
Q Consensus 167 ~~L~~~-~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~ 210 (394)
+++... .|+.-..+|-+.++.+|.+|.+...-.---..++-+++
T Consensus 329 ~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~ 373 (519)
T 2a65_A 329 AIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKL 373 (519)
T ss_dssp HHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCC
Confidence 333322 45666678888999999999887665544333333343
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=93.68 E-value=4.9 Score=41.24 Aligned_cols=39 Identities=15% Similarity=-0.044 Sum_probs=28.9
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhhc
Q 016122 171 NVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFLD 209 (394)
Q Consensus 171 ~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl~ 209 (394)
..++++-.-++..|+++|..|+.-+...+.. ...+++.+
T Consensus 315 ~~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~ 354 (530)
T 3dh4_A 315 QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYK 354 (530)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Confidence 3778888888999999999998766655555 35566654
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=69.09 E-value=1.1e+02 Score=31.52 Aligned_cols=38 Identities=16% Similarity=-0.050 Sum_probs=27.9
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHhhhh
Q 016122 171 NVLGSWSSKLFAIALLASGQSSTITGTYAGQ-YVMQGFL 208 (394)
Q Consensus 171 ~~~G~~a~~ifaigLlaAg~sStit~t~agq-~vm~gfl 208 (394)
..++++-.-++..|+++|..|+.-+...+.. ...+++.
T Consensus 344 ~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~~~Diy 382 (593)
T 2xq2_A 344 QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIY 382 (593)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999987666555544 3445554
No 8
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=56.05 E-value=27 Score=32.38 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=16.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 016122 27 YGVRKLEFLIAFLVFTMAGCFF 48 (394)
Q Consensus 27 ~g~rklE~~~~~Lv~im~l~F~ 48 (394)
|||+|.|.+...+.+++.+...
T Consensus 66 yG~~r~E~l~~l~~~~~l~~~~ 87 (283)
T 3h90_A 66 FGHGKAESLAALAQSMFISGSA 87 (283)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 7999999988876666544433
No 9
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=50.53 E-value=29 Score=32.80 Aligned_cols=20 Identities=30% Similarity=0.189 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 016122 27 YGVRKLEFLIAFLVFTMAGC 46 (394)
Q Consensus 27 ~g~rklE~~~~~Lv~im~l~ 46 (394)
|||+|.|.+...+.+++.+.
T Consensus 75 yG~~R~E~l~al~~~~~l~~ 94 (306)
T 3j1z_P 75 YGHGKAEPLAALAQSAFIMG 94 (306)
T ss_dssp SCCTTHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHH
Confidence 79999999887665554433
No 10
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=11.38 E-value=8.2e+02 Score=24.78 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh-hhhhhHhhhhhHHHHHhhhhcCC
Q 016122 164 KASFLLRNVLGSWSSKLFAIALLAS-GQSSTITGTYAGQYVMQGFLDLR 211 (394)
Q Consensus 164 ~a~~~L~~~~G~~a~~ifaigLlaA-g~sStit~t~agq~vm~gfl~~~ 211 (394)
..++.++..||+..+.+.++-.+.. .+......-+++..+++..+|++
T Consensus 113 T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~ 161 (593)
T 2xq2_A 113 TIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIP 161 (593)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5678999999988776665443322 22222234456677888888864
Done!