Query 016123
Match_columns 394
No_of_seqs 358 out of 2287
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 08:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 3.4E-22 1.1E-26 196.7 19.8 293 10-394 21-324 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 5.4E-22 1.8E-26 195.8 10.1 285 13-394 26-319 (451)
3 2gfp_A EMRD, multidrug resista 99.8 1.5E-19 5E-24 174.6 11.6 243 31-394 17-264 (375)
4 4gc0_A D-xylose-proton symport 99.8 5.4E-19 1.9E-23 176.6 8.3 169 34-202 32-229 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.7 7.2E-16 2.5E-20 154.0 17.1 149 38-193 38-196 (491)
6 2cfq_A Lactose permease; trans 99.5 1.4E-14 4.7E-19 142.3 6.7 127 36-167 30-162 (417)
7 2xut_A Proton/peptide symporte 99.4 1.9E-12 6.4E-17 130.3 17.4 148 38-192 37-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.0 8.4E-10 2.9E-14 108.2 11.2 157 31-192 269-432 (451)
9 4gc0_A D-xylose-proton symport 99.0 2.1E-08 7.3E-13 99.5 18.3 166 30-198 293-468 (491)
10 4aps_A DI-OR tripeptide H+ sym 98.9 3.9E-09 1.3E-13 104.9 12.3 163 36-198 305-477 (491)
11 3o7q_A L-fucose-proton symport 98.9 1.1E-08 3.7E-13 99.9 13.8 130 31-169 275-407 (438)
12 2cfq_A Lactose permease; trans 98.8 1.4E-08 4.7E-13 99.3 10.5 141 50-197 260-404 (417)
13 2xut_A Proton/peptide symporte 98.2 8.5E-06 2.9E-10 81.4 12.3 104 65-168 352-466 (524)
14 2gfp_A EMRD, multidrug resista 98.2 9.8E-08 3.4E-12 91.3 -2.0 129 35-168 220-351 (375)
15 2g9p_A Antimicrobial peptide l 38.8 12 0.00041 19.7 1.0 15 67-81 2-16 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.89 E-value=3.4e-22 Score=196.73 Aligned_cols=293 Identities=13% Similarity=0.065 Sum_probs=196.2
Q ss_pred CCCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHH
Q 016123 10 SAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLE 87 (394)
Q Consensus 10 ~~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~ 87 (394)
.+++|..+....+..+..+. .+.++.+.|.+++++|+|..+.+++.+...++.. ..++.|++.||+|||++++++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34455555544444444443 3566778899999999999999998787777776 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123 88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSAL 166 (394)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~ 166 (394)
.+++.++...... .++++.+++.|++.|++.+..+++....+.+++| ++|+.++|+..++.++|..+.+.+...+
T Consensus 101 ~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988743211 1478889999999999999988888999999998 5799999999999999999999887776
Q ss_pred c-CCChh-HHHHHHHHHHHHHHHhhhhcccccCCCCCc--cccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHH
Q 016123 167 F-ADDPA-KFLFMLAIVPFVVCLGAIFFLRETTPASTV--DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI 242 (394)
Q Consensus 167 ~-~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 242 (394)
. +.... .--. ....++.... ......+||..+...+.+.
T Consensus 177 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--------------------- 219 (438)
T 3o7q_A 177 ILSNVPHQSQDV----------------LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIV--------------------- 219 (438)
T ss_dssp HHTSSCCCCHHH----------------HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred Hhcccccccccc----------------cccCCcchhhhhhhhhhhhHHHHHHHHHHHH---------------------
Confidence 5 32100 0000 0000000000 0000122555443222110
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCc
Q 016123 243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED 322 (394)
Q Consensus 243 ~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (394)
+++..... .. +.|++++ +.++ + ++ + ....
T Consensus 220 ------~~~~~~~~------~~-~~p~~~~---------~~~~---~---------------~~-------~----~~~~ 248 (438)
T 3o7q_A 220 ------LLVALLIM------LT-KFPALQS---------DNHS---D---------------AK-------Q----GSFS 248 (438)
T ss_dssp ------HHHHHHHH------HC-CCCCCTT---------TCCC---C---------------SS-------T----TSHH
T ss_pred ------HHHHHHHH------HH-cCCcccc---------cccc---c---------------cc-------c----cchh
Confidence 00001100 11 1111110 0000 0 00 0 0012
Q ss_pred chHHHHhhchhHHHHHHHHHhcccceeeeeeChHHH-HHHh-CCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123 323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI-GLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK 394 (394)
Q Consensus 323 ~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i-~~~~-G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r 394 (394)
.+.++.+|+|.+|...+..++..+....+...++.+ .++. |.+ ++....++..+.+.+|+++.|+++||++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467889999999999999888888777788888888 8776 876 36678888999999999999999999975
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.86 E-value=5.4e-22 Score=195.85 Aligned_cols=285 Identities=12% Similarity=0.002 Sum_probs=191.2
Q ss_pred cHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHH
Q 016123 13 KWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV 90 (394)
Q Consensus 13 ~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~ 90 (394)
+|..+....+..+..+ ..+.++.+.|.+.+++ ++..+.+++.+...++... +++.|++.||+|+|++++++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 4555555555544433 3466778888899999 9999999987777777765 89999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123 91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (394)
Q Consensus 91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~ 169 (394)
+.++.++.... . ++++.+++.+++.|++.+..+++....+.+++| ++|++++|+...+.++|..+.+.+...+.+
T Consensus 105 ~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~- 180 (451)
T 1pw4_A 105 VMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA- 180 (451)
T ss_dssp HHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH-
T ss_pred HHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99888761100 0 357778889999999999888888899999998 569999999999999999988887766543
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccc-chhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHH
Q 016123 170 DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEA-KYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILI 248 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
..+ ||..+...+.+.+...
T Consensus 181 -------------------------------------~~g~w~~~f~~~~~~~~~~~----------------------- 200 (451)
T 1pw4_A 181 -------------------------------------WFNDWHAALYMPAFCAILVA----------------------- 200 (451)
T ss_dssp -------------------------------------HTCCSTTCTHHHHHHHHHHH-----------------------
T ss_pred -------------------------------------HhccHHHHHHHHHHHHHHHH-----------------------
Confidence 233 5554432221100000
Q ss_pred HHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHH
Q 016123 249 ILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEA 328 (394)
Q Consensus 249 ~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 328 (394)
+ + .-.. ++ +++++.+.. +.+ +.+. +.+ ++ .+.+ ++++...++...++.
T Consensus 201 ~-~-~~~~------~~-~~~~~~~~~-~~~---~~~~---~~~--------~~--~~~~------~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 201 L-F-AFAM------MR-DTPQSCGLP-PIE---EYKN---DYP--------DD--YNEK------AEQELTAKQIFMQYV 248 (451)
T ss_dssp H-H-HHHH------CC-CSSTTTCCC-SCT---TTCC---C-----------------------------CCTHHHHHHT
T ss_pred H-H-HHhh------cc-CCHhhcCCC-Chh---hhcc---ccc--------cc--chhh------hhcccccccchHHHH
Confidence 0 0 0000 11 111110000 000 0000 000 00 0000 000111123346788
Q ss_pred hhchhHHHHHHHHHhcccceeeeeeChHHHHHH-hCCCc--chhhHHHHHHHHHHhhhhhccccchh--cC
Q 016123 329 MWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYF--IK 394 (394)
Q Consensus 329 l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~-~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~--~r 394 (394)
+|++.+|.+.+..++.......+...++.+.++ .|.++ .....++.++++.+|+++.|+++||+ +|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 319 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN 319 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998888877766777888888887 67763 56788899999999999999999998 65
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.80 E-value=1.5e-19 Score=174.58 Aligned_cols=243 Identities=13% Similarity=0.046 Sum_probs=176.5
Q ss_pred ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (394)
Q Consensus 31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 109 (394)
..+....|.+.+++|+|..+.+++.+...++.. ..++.|++.||+|||+++.++.++.+++..+..+. ++++
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 89 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLT 89 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHH
Confidence 445566788899999999999998777777775 48999999999999999999999999998887764 4678
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (394)
Q Consensus 110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 188 (394)
.+++.+++.|++.+..++.....+.+++| ++|+++.++...+.++|..+.+.+...+.+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------------------- 149 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------------------- 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--------------------
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------------
Confidence 88889999999999888888899999998 579999999999999999988888766653
Q ss_pred hhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccccccccccc
Q 016123 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (394)
Q Consensus 189 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~ 268 (394)
..+||..+...+.+ .++.... ....++
T Consensus 150 ------------------~~~~~~~~~~~~~~---------------------------~~~~~~~----~~~~~~---- 176 (375)
T 2gfp_A 150 ------------------MWNWRACYLFLLVL---------------------------CAGVTFS----MARWMP---- 176 (375)
T ss_dssp ------------------HHHHHHHHHHHHHH---------------------------HHHHHCC----CCCSSC----
T ss_pred ------------------hccHHHHHHHHHHH---------------------------HHHHHHH----HHHHCc----
Confidence 24566544322110 0000010 000011
Q ss_pred ccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccce
Q 016123 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (394)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g 348 (394)
++++ .++ + ++ + ...+.++.+|+|++|.+.+..++.....
T Consensus 177 ~~~~----------~~~---~---------------~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2gfp_A 177 ETRP----------VDA---P---------------RT-------R------LLTSYKTLFGNSGFNCYLLMLIGGLAGI 215 (375)
T ss_dssp CCST----------TTC---C---------------CC-------C------TTTCSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCC----------CCc---c---------------cc-------c------HHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 0100 000 0 00 0 0123467889999999988888776666
Q ss_pred eeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123 349 LAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK 394 (394)
Q Consensus 349 ~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r 394 (394)
..+....+.+.++ .|.+ +.....++.+++..+++++.|++.||++|
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666 6665 35677888899999999999999999864
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.76 E-value=5.4e-19 Score=176.62 Aligned_cols=169 Identities=13% Similarity=0.057 Sum_probs=131.2
Q ss_pred hhcHHHHHHHcCC--------ChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 016123 34 SNYSDALKTLMNL--------TQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI- 103 (394)
Q Consensus 34 ~~~~~~l~~~~g~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~- 103 (394)
+...|.++++++. +.++.+++.+...+|..+ +++.|++.||+|||++++++.+++.++.++.++......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4456777777643 234556666777778765 789999999999999999999999999888764210000
Q ss_pred ----------CCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC----
Q 016123 104 ----------QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA---- 168 (394)
Q Consensus 104 ----------~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~---- 168 (394)
.+++++++++.|++.|+|.|..++....+++|+.| ++||+..++...+..+|..+...+......
T Consensus 112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (491)
T 4gc0_A 112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA 191 (491)
T ss_dssp SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence 01478899999999999999988889999999998 579999999999888887776665544332
Q ss_pred ----CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCc
Q 016123 169 ----DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV 202 (394)
Q Consensus 169 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~ 202 (394)
...|+++...+.++.++.++..+++||+|++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~ 229 (491)
T 4gc0_A 192 SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS 229 (491)
T ss_dssp TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH
T ss_pred ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH
Confidence 2467888888899999999999999999987654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.67 E-value=7.2e-16 Score=154.01 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=119.3
Q ss_pred HHHHHH-----cCCChhhhHHHHHHHHhhhhh-hhhhHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123 38 DALKTL-----MNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ 110 (394)
Q Consensus 38 ~~l~~~-----~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 110 (394)
+.++++ +|+|..+.+++.+...++..+ +++.|++.|| +|||+++.++.++.+++.++++++ ++++.
T Consensus 38 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~ 110 (491)
T 4aps_A 38 YYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FGASA 110 (491)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CSTTH
T ss_pred HHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hhHHH
Confidence 334555 999999999987777777764 8999999999 899999999999999998876542 46778
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHhcc-cC--CCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 016123 111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RN--RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL 187 (394)
Q Consensus 111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~--RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 187 (394)
+++.+++.|+|.+...++....+.+++| ++ |+.+.++...+..+|..+.+.+...+.+...|+..+.+..+..++++
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 8889999999999888888899999998 45 77788888899999999999888887765556666666655555555
Q ss_pred hhhhcc
Q 016123 188 GAIFFL 193 (394)
Q Consensus 188 ~~~~~~ 193 (394)
+..++.
T Consensus 191 ~~~~~~ 196 (491)
T 4aps_A 191 LVYYFG 196 (491)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.50 E-value=1.4e-14 Score=142.32 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=83.2
Q ss_pred cHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHH-HHHhccCCchH-HHHH
Q 016123 36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWL-VVSRKIQPLSY-WQMC 112 (394)
Q Consensus 36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~-~~~~~~~~~~~-~~l~ 112 (394)
+...+++++|+|..+.+++.+...++... +++.|++.||+|||++++++.++.+++...... ... +.. ..+.
T Consensus 30 ~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 104 (417)
T 2cfq_A 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQYNIL 104 (417)
T ss_dssp HHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 33336778999999999977777777754 899999999999999999988876543221111 000 000 0122
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHhcc---cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123 113 VFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDLCSALF 167 (394)
Q Consensus 113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp---~~RG~a~gl~~~~~glg~~i~~~i~~~~~ 167 (394)
..+++.+.+.+..+.+.......+.+ ++||.+.|....+..+|..+.+.+...+.
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 162 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555544444444555554 45798999998888898888887766554
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.44 E-value=1.9e-12 Score=130.30 Aligned_cols=148 Identities=18% Similarity=0.041 Sum_probs=118.7
Q ss_pred HHHHHHcC------CChhhhHHHHHHHHhhhhh-hhhhHhhhhcc-CchHHHHHHHHHHHHHHHHHHHHHHhccCCc-hH
Q 016123 38 DALKTLMN------LTQLELNNLSVVKDIGKAF-GLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPL-SY 108 (394)
Q Consensus 38 ~~l~~~~g------~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~-~~ 108 (394)
+.+++++| ++..+.+++.+...++..+ .++.|++.||+ |+|+++.++.++.+++.++..++ + ++
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 109 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------EHSV 109 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------SSCH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------cccH
Confidence 34678899 9999999987777777764 89999999999 99999999999999988877653 3 67
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHH---HHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 016123 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGI---LKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184 (394)
Q Consensus 109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl---~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 184 (394)
+.+++.+++.|++.+...++....+.+++|+ +||++.++ ...+..+|..+.+.+...+.+...|+..+.+..+..+
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~ 189 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMF 189 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8888889999999998888888999999985 69887777 8888899999988887777665556666665555555
Q ss_pred HHHhhhhc
Q 016123 185 VCLGAIFF 192 (394)
Q Consensus 185 v~~~~~~~ 192 (394)
+.++..++
T Consensus 190 ~~~~~~~~ 197 (524)
T 2xut_A 190 VATVFFWL 197 (524)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 55554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.03 E-value=8.4e-10 Score=108.19 Aligned_cols=157 Identities=10% Similarity=-0.014 Sum_probs=110.8
Q ss_pred ccchhcHHHHHH-HcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhcc--CchHHHHHHHHHHH-HHHHHHHHHHHhccCC
Q 016123 31 YTFSNYSDALKT-LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIILLIGSLEGL-VGYGAQWLVVSRKIQP 105 (394)
Q Consensus 31 y~~~~~~~~l~~-~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~~~g~~~~~-~g~~~~~~~~~~~~~~ 105 (394)
+.+..+.|.+.+ .+|++..+.+++.....++... .++.|++.||+ |+|+.+.++..+.. ++.+++.+. +.
T Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 343 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----PA 343 (451)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----CT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----cc
Confidence 445566676644 4899999999976666666654 78999999999 99999988877766 565544321 11
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhh-hHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 016123 106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGL-STAIFTDLCSALFADDPAKFLFMLAIVPF 183 (394)
Q Consensus 106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~gl-g~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 183 (394)
.+.+.+.+..++.|++.+..+......+.+.+|+ +||++.|+......+ |+.+.+.+...+.+....+..+.+..+..
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 423 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2455566666777777776666667888999996 599999999999999 99999998888877544444444333333
Q ss_pred HHHHhhhhc
Q 016123 184 VVCLGAIFF 192 (394)
Q Consensus 184 ~v~~~~~~~ 192 (394)
+++.+..+.
T Consensus 424 ~~~~~~~~~ 432 (451)
T 1pw4_A 424 ILAVILLIV 432 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344333333
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.96 E-value=2.1e-08 Score=99.48 Aligned_cols=166 Identities=12% Similarity=0.080 Sum_probs=107.5
Q ss_pred cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123 30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (394)
Q Consensus 30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 108 (394)
.+....|.+.+.+..+.+..+.........+... ..++++++.||+|||+.++.+.....++.+.......... ...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 370 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PGI 370 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--CHH
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc--chH
Confidence 3455567788888888888776665555445554 4789999999999999999999988888777665433321 122
Q ss_pred H-HHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC-------ChhHHHHHHH
Q 016123 109 W-QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-------DPAKFLFMLA 179 (394)
Q Consensus 109 ~-~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-------~~~~~~~~~~ 179 (394)
. .+.+..+..+.+.+.. +....+.+|.||. .|++++|+..+...+++.+.+.+...+.+. .....+++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~ 449 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 449 (491)
T ss_dssp HHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2 2222233333333332 3456778899995 599999999998889988887766554432 1122334445
Q ss_pred HHHHHHHHhhhhcccccCC
Q 016123 180 IVPFVVCLGAIFFLRETTP 198 (394)
Q Consensus 180 ~~~~~v~~~~~~~~~~~p~ 198 (394)
++..+..+...+++||...
T Consensus 450 ~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 450 CMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHheecCCCC
Confidence 5555555555666665443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.95 E-value=3.9e-09 Score=104.93 Aligned_cols=163 Identities=5% Similarity=-0.053 Sum_probs=105.6
Q ss_pred cHHH-HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHH-----HHHHHHHHHHHHHHHHHHhc--cCCc
Q 016123 36 YSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILL-----IGSLEGLVGYGAQWLVVSRK--IQPL 106 (394)
Q Consensus 36 ~~~~-l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-----~g~~~~~~g~~~~~~~~~~~--~~~~ 106 (394)
+.+. .++.++.+..+.+++.....++.. .+++.|++.||+|+|+... ++.++.++++.+........ ....
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4aps_A 305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV 384 (491)
T ss_dssp HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3343 455577775566664444444444 4789999999999987655 77777777776665432110 0012
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016123 107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV 185 (394)
Q Consensus 107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v 185 (394)
+.+.+.+..++.|++.+..++.....+.+.+|+ +||.+.|+......+|+.+.+.+...+.+......+...+++..+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL 464 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 445555666778888888777788889999995 5999999999999999999988877666555555555566665555
Q ss_pred HHhhhhcccccCC
Q 016123 186 CLGAIFFLRETTP 198 (394)
Q Consensus 186 ~~~~~~~~~~~p~ 198 (394)
.++..++.|+..+
T Consensus 465 ~~~~~~~~~~~~~ 477 (491)
T 4aps_A 465 GIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.91 E-value=1.1e-08 Score=99.87 Aligned_cols=130 Identities=9% Similarity=-0.056 Sum_probs=96.4
Q ss_pred ccchhcHHHH-H-HHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 016123 31 YTFSNYSDAL-K-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS 107 (394)
Q Consensus 31 y~~~~~~~~l-~-~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 107 (394)
+.+..+.|.+ . +.+|++..+.+++.....++... .++.|++.||+|+|+++.++.++..++.++..+. ++
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 347 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GG 347 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------CC
Confidence 3444555655 4 45599999999976666666654 7899999999999999999998888887765542 23
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123 108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (394)
Q Consensus 108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~ 169 (394)
.+.+. ..++.|++.+..++.......+.+|++|+.+.++... ..+|+.+.+.+...+.+.
T Consensus 348 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 348 HVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33333 3356677777777777777789999889999998884 458888888888877754
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.81 E-value=1.4e-08 Score=99.30 Aligned_cols=141 Identities=12% Similarity=0.103 Sum_probs=90.1
Q ss_pred hhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhh
Q 016123 50 ELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA 128 (394)
Q Consensus 50 ~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~ 128 (394)
+.+++.....++.. ..++.|++.||+|+|+++.++.++.++++....+. ++.+.+.+..++.+++.+.....
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444334443 47899999999999999998888887776554321 24455555555555555544455
Q ss_pred HHHHHHHhccc-CCCchHHHH-HhhhhhhHHHHHHHHHhhcCCChhHHHH-HHHHHHHHHHHhhhhcccccC
Q 016123 129 VLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFADDPAKFLF-MLAIVPFVVCLGAIFFLRETT 197 (394)
Q Consensus 129 ~~~~~~~~Fp~-~RG~a~gl~-~~~~glg~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~p 197 (394)
......+.+|+ .||++.|+. ....++|+.+.+.+...+.+.......+ +.+++..+..++..+..|+.+
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 56788899995 699999995 7778899999988888776543333333 333333333333444455433
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.20 E-value=8.5e-06 Score=81.42 Aligned_cols=104 Identities=7% Similarity=-0.090 Sum_probs=70.0
Q ss_pred hhhhHhhh----hccCc----hHHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 016123 65 GLLAGLAS----DRIPA----PIILLIGSLEGLVGYGAQWLVVSRK--IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCI 134 (394)
Q Consensus 65 ~~~~G~l~----Dr~G~----r~~~~~g~~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~ 134 (394)
+++.+++. ||.|+ ++.+.+|.++.+++++++....... ....+.+.+.+..++.|++.+..+........
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp GGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666654 55543 4567778777777776654321000 00124455566677888888877777778888
Q ss_pred Hhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123 135 RNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA 168 (394)
Q Consensus 135 ~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~ 168 (394)
+.+|+ +||+++|+..+..++|+.+.+.+...+.+
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99984 69999999999999999999998887765
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.19 E-value=9.8e-08 Score=91.28 Aligned_cols=129 Identities=13% Similarity=0.142 Sum_probs=87.5
Q ss_pred hcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHH-HHHHHHHHHHHHHhccCCchHHHH
Q 016123 35 NYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE-GLVGYGAQWLVVSRKIQPLSYWQM 111 (394)
Q Consensus 35 ~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l 111 (394)
.+.|.+ ++++|++..+.+++.....++... .++.|++.||+|+|. ..+... ...+.......... .++.+.+
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 294 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG---VMNVWTL 294 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc---cccHHHH
Confidence 334443 556888988888876666666654 789999999998733 333333 22232221111100 0245555
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123 112 CVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFA 168 (394)
Q Consensus 112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~ 168 (394)
++..++.|++.+..++.......+.+|++||++.|+......+|+.+.+.+...+.+
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677788888877778888899999889999999999988888887777666544
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=38.82 E-value=12 Score=19.65 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=11.9
Q ss_pred hhHhhhhccCchHHH
Q 016123 67 LAGLASDRIPAPIIL 81 (394)
Q Consensus 67 ~~G~l~Dr~G~r~~~ 81 (394)
+.|.++.+||+|.+.
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 468999999998653
Done!