BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016124
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 274
I EK GK+HP+ L NLA Y + + EAE L + L+I K +G D ++ +
Sbjct: 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157
Query: 275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI---QTRLGEDDTK 331
+L + + + +E E AL I + G D V + + L S Q + + +T
Sbjct: 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 332 LLELLKRVLRIQEREFGSESEE 353
E+L R EREFGS +E
Sbjct: 218 YKEILTRA---HEREFGSVDDE 236
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%)
Query: 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
D P + +L + +Y Y+ + + + + E GK + +L +A + G
Sbjct: 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123
Query: 71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130
G+ K+A + R + I E G + D+ L +L L +GK + E + R L+IY
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 182
G +D V +LA G ++A LYK+ L + + S+DD
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 221 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 280
G E P+ + L NL Y+ + A L + L+ + KT G D ++ + L +
Sbjct: 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY 79
Query: 281 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 340
N+ K+A L+ +AL IRE GKD V L+ L + + G+ + L KR L
Sbjct: 80 RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK-YKEAEPLCKRAL 138
Query: 341 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 373
I+E+ G + +V L + G+ EE
Sbjct: 139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 58/121 (47%)
Query: 7 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 66
+L D P + A L ++ +Y Y+++ + +R + + E GK + L +A
Sbjct: 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161
Query: 67 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 126
+ + G+ ++ Y R + I + G + ++ +L S ++K+GK AE+++ I
Sbjct: 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221
Query: 127 L 127
L
Sbjct: 222 L 222
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 2/169 (1%)
Query: 25 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 84
Y++ YE ++ + ++ + LE G + T L +A V + K A + +
Sbjct: 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95
Query: 85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144
+ I E G + + L +L L+ K GK +AE + R L+I KV G++ V
Sbjct: 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155
Query: 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 193
+ +LA G EE Y++AL + + + DD + + +LA
Sbjct: 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTK--LGPDDPNVAKTKNNLA 202
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 1/165 (0%)
Query: 217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 276
EK G +HP T L LA Y + EA LL L I KT+G D +++ + +L
Sbjct: 32 EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336
+ + KEAE L AL IRE GK V + L+ L + G+ + ++
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE-EVEYYY 150
Query: 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381
+R L I G + V T + S K G+ ++ L K +
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
D P + +L + +Y Y+++ + + + E GK + +L +A + G
Sbjct: 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97
Query: 71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130
G+ K+A + R + I E G D+ L +L L +GKA + E + R L+IY
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 181
G +D V +LA G ++A LYK+ L + + S++
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 274
I EK GK+HP+ L NLA Y + + EAE L + L+I K +G ++ +
Sbjct: 72 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN 131
Query: 275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE-DDTKLL 333
+L + + + +E E AL I G D V + + L S + G+ D +
Sbjct: 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET- 190
Query: 334 ELLKRVL-RIQEREFGS 349
L K +L R E+EFGS
Sbjct: 191 -LYKEILTRAHEKEFGS 206
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 7 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 66
+L D P + A L ++ +Y Y+++ + +R + + E GK + L +A
Sbjct: 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135
Query: 67 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 126
+ + G+A++ Y R + I G + ++ +L S ++K+GK DAE+++ I
Sbjct: 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
Query: 127 L-KIYTKVYGENDG 139
L + + K +G +G
Sbjct: 196 LTRAHEKEFGSVNG 209
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 309
L + L+ + KT G D ++ + L + N+ KEA L+ +AL IRE GKD
Sbjct: 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 310 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG 369
V L+ L + + G+ + L KR L I+E+ G +V L + G
Sbjct: 83 AVAATLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141
Query: 370 RKEE 373
+ EE
Sbjct: 142 KAEE 145
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 40 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99
++ + LE G + T L +A V + K+A + + + I E G + +
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNA 158
L +L L+ K GK +AE + R L+I KV G+ V + +LA C N G A
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA-LLCQNQGKA 143
Query: 159 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 193
EE Y++AL + + + DD + + +LA
Sbjct: 144 EEVEYYYRRALEIY--ATRLGPDDPNVAKTKNNLA 176
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 1/165 (0%)
Query: 217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 276
EK G +HP T L LA Y + EA LL L I KT+G D +++ + +L
Sbjct: 32 EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336
+ + KEAE L AL IRE GK V + L L + G+ + ++
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE-EVEYYY 150
Query: 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381
+R L I G + V T + S K G+ ++ L K +
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 70
D P + +L + +Y Y+++ + + + E GK + +L +A + G
Sbjct: 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97
Query: 71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130
G+ K+A + R + I E G D+ L +L L +GKA + E + R L+IY
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 181
G +D V +LA G ++A LYK+ L + + S++
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 274
I EK GK+HP+ L NLA Y + + EAE L + L+I K +G ++ +
Sbjct: 72 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLS 131
Query: 275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE-DDTKLL 333
+L + + + +E E AL I G D V + + L S + G+ D +
Sbjct: 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET- 190
Query: 334 ELLKRVL-RIQEREFGS 349
L K +L R E+EFGS
Sbjct: 191 -LYKEILTRAHEKEFGS 206
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 7 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 66
+L D P + A L ++ +Y Y+++ + +R + + E GK + L +A
Sbjct: 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLAL 135
Query: 67 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 126
+ + G+A++ Y R + I G + ++ +L S ++K+GK DAE+++ I
Sbjct: 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
Query: 127 L-KIYTKVYGENDG 139
L + + K +G +G
Sbjct: 196 LTRAHEKEFGSVNG 209
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 309
L + L+ + KT G D ++ + L + N+ KEA L+ +AL IRE GKD
Sbjct: 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 310 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG 369
V L+ L + + G+ + L KR L I+E+ G +V L + G
Sbjct: 83 AVAATLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQG 141
Query: 370 RKEE 373
+ EE
Sbjct: 142 KAEE 145
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 40 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99
++ + LE G + T L +A V + K+A + + + I E G + +
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNA 158
L +L L+ K GK +AE + R L+I KV G+ V + +LA C N G A
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLA-LLCQNQGKA 143
Query: 159 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 193
EE Y++AL + + + DD + + +LA
Sbjct: 144 EEVEYYYRRALEIY--ATRLGPDDPNVAKTKNNLA 176
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 78
++G+ Y +Y++++ YQ+ + L+ R + + G +A+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALE-LDPR-------SAEAWYNLGNAYYKQGDYDEAI 55
Query: 79 EIYHRVITILELN-RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137
E Y + LEL+ R E+ ++LG+ + K+G +A + + L++
Sbjct: 56 EYYQKA---LELDPRSAEA------WYNLGNAYYKQGDYDEAIEYYQKALEL-------- 98
Query: 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
D R A +L +A G+ +EA+E Y+KAL +
Sbjct: 99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 72 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 131
G +A+E Y + LEL A ++LG+ + K+G +A + + L++Y
Sbjct: 23 GDYDEAIEYYQKA---LELYPNNAEA-----WYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
N+ A +L +A G+ +EA+E Y+KAL +
Sbjct: 75 -----NNAE---AWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 163
++LG+ + K+G +A + + L++Y N+ A +L +A G+ +EA+E
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELYP-----NNAE---AWYNLGNAYYKQGDYDEAIE 64
Query: 164 LYKKALRV 171
Y+KAL +
Sbjct: 65 YYQKALEL 72
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.0 bits (71), Expect = 0.66, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 72 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 131
G +A+E Y + LEL+ A ++LG+ + K+G +A + + L++
Sbjct: 23 GDYDEAIEYYQKA---LELDPNNAEA-----WYNLGNAYYKQGDYDEAIEYYQKALEL-- 72
Query: 132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171
D A +L +A G+ +EA+E Y+KAL +
Sbjct: 73 ------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 163
++LG+ + K+G +A + + L++ D A +L +A G+ +EA+E
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 164 LYKKALRV 171
Y+KAL +
Sbjct: 65 YYQKALEL 72
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 163
++LG+ + K+G +A + + L++ D R A +L +A G+ +EA+E
Sbjct: 7 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIE 58
Query: 164 LYKKALRV 171
Y+KAL +
Sbjct: 59 YYQKALEL 66
>pdb|3U84|A Chain A, Crystal Structure Of Human Menin
pdb|3U84|B Chain B, Crystal Structure Of Human Menin
pdb|3U85|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1
pdb|3U86|A Chain A, Crystal Structure Of Human Menin In Complex With Jund
pdb|3U88|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
pdb|3U88|B Chain B, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
Length = 550
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 184
LA C N N EA++ + VI+D NY D+ I
Sbjct: 324 LAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEI 360
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 147 SLAHAKCANGNAEEAVELYKKALRVIKD 174
+LA+ K GN EEAV LY+KAL V +
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEVFPE 41
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 105 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 164
+L + ++G +AE ++ L++ + + ++ +LA+ K GN EEAV L
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRL-CPTHAD-------SLNNLANIKREQGNIEEAVRL 327
Query: 165 YKKALRVIKD 174
Y+KAL V +
Sbjct: 328 YRKALEVFPE 337
>pdb|4GPQ|A Chain A, Structural Insights Into Inhibition Of The Bivalent
Menin-Mll Interaction By Small Molecules In Leukemia
pdb|4GQ3|A Chain A, Human Menin With Bound Inhibitor Mi-2
pdb|4GQ4|A Chain A, Human Menin With Bound Inhibitor Mi-2-2
pdb|4GQ6|A Chain A, Human Menin In Complex With Mll Peptide
Length = 489
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 184
LA C N N EA++ + VI+D NY D+ I
Sbjct: 309 LAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEI 345
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 60 SLLGMAKVLGSIGRAKKAVEIY--HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 117
S M + S+ A++A EIY H I L + LF+ L +K+
Sbjct: 152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS--------LFATNFLDLKQ---- 199
Query: 118 DAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176
E S K Y+ E + +G + ++ K + E+A+ +K+A+ V ++SN
Sbjct: 200 -YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 163
++LG+ + K+G +A + + L++ D A +L +A G+ +EA+E
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 164 LYKKALRV 171
Y+KAL +
Sbjct: 65 YYQKALEL 72
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 52
+P L G LE YE+++ Y VINV+E Y K
Sbjct: 36 DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,934,140
Number of Sequences: 62578
Number of extensions: 372978
Number of successful extensions: 1209
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 51
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)