Query 016124
Match_columns 394
No_of_seqs 1230 out of 1687
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 04:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 100.0 2.3E-36 4.9E-41 253.5 39.2 339 23-365 164-502 (508)
2 KOG1840 Kinesin light chain [C 100.0 1.9E-36 4.1E-41 253.9 38.3 313 5-320 188-500 (508)
3 KOG4626 O-linked N-acetylgluco 100.0 6.4E-39 1.4E-43 263.7 18.3 321 11-390 145-491 (966)
4 KOG4626 O-linked N-acetylgluco 100.0 1.1E-37 2.3E-42 256.5 22.6 321 11-390 111-457 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-29 2.6E-34 228.5 37.3 324 15-390 126-577 (615)
6 PRK15174 Vi polysaccharide exp 100.0 4.3E-27 9.3E-32 211.2 31.3 313 9-388 69-385 (656)
7 TIGR00990 3a0801s09 mitochondr 100.0 2.5E-26 5.4E-31 207.1 30.8 281 57-387 126-499 (615)
8 KOG1130 Predicted G-alpha GTPa 100.0 2.3E-25 5E-30 175.7 25.5 332 20-372 21-372 (639)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-25 5.1E-30 212.6 30.9 309 13-382 564-898 (899)
10 PRK11447 cellulose synthase su 100.0 3.2E-25 6.9E-30 212.4 31.7 326 11-385 298-701 (1157)
11 PRK15174 Vi polysaccharide exp 99.9 9.1E-25 2E-29 196.3 31.8 302 19-387 45-350 (656)
12 PRK11788 tetratricopeptide rep 99.9 4.8E-24 1E-28 183.2 33.7 308 19-384 38-347 (389)
13 PRK11447 cellulose synthase su 99.9 3.5E-24 7.7E-29 205.3 34.5 318 21-385 274-667 (1157)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-24 2.4E-29 208.0 30.8 316 11-387 528-869 (899)
15 KOG0547 Translocase of outer m 99.9 4.9E-23 1.1E-27 165.9 27.1 330 13-393 112-575 (606)
16 KOG1130 Predicted G-alpha GTPa 99.9 4.1E-24 8.9E-29 168.7 19.9 306 65-389 24-349 (639)
17 KOG1126 DNA-binding cell divis 99.9 1.3E-23 2.8E-28 175.6 21.5 308 14-389 315-625 (638)
18 PRK11788 tetratricopeptide rep 99.9 3E-22 6.6E-27 172.1 29.8 279 60-388 37-315 (389)
19 KOG1126 DNA-binding cell divis 99.9 1.2E-23 2.7E-28 175.7 19.4 277 7-342 344-620 (638)
20 KOG2002 TPR-containing nuclear 99.9 1.3E-21 2.8E-26 170.1 29.4 339 8-388 156-529 (1018)
21 PRK10049 pgaA outer membrane p 99.9 1.2E-21 2.6E-26 180.0 31.1 327 16-390 83-462 (765)
22 PRK10049 pgaA outer membrane p 99.9 1.7E-21 3.7E-26 179.0 30.6 331 12-388 45-426 (765)
23 KOG2002 TPR-containing nuclear 99.9 2.1E-20 4.5E-25 162.8 31.1 321 12-383 266-592 (1018)
24 PRK09782 bacteriophage N4 rece 99.9 3.2E-21 6.9E-26 177.7 27.5 292 10-373 469-762 (987)
25 KOG1155 Anaphase-promoting com 99.9 3.1E-20 6.7E-25 149.0 28.6 303 22-383 233-535 (559)
26 PRK09782 bacteriophage N4 rece 99.9 8.8E-21 1.9E-25 174.8 28.2 267 57-386 476-742 (987)
27 KOG1155 Anaphase-promoting com 99.9 3.3E-20 7.1E-25 148.8 27.5 273 17-341 263-535 (559)
28 KOG1173 Anaphase-promoting com 99.9 1.8E-19 3.8E-24 148.2 25.5 275 16-342 244-518 (611)
29 KOG2076 RNA polymerase III tra 99.9 1.5E-18 3.3E-23 150.2 30.4 315 16-381 139-509 (895)
30 PLN03218 maturation of RBCL 1; 99.9 6.3E-18 1.4E-22 157.2 35.0 309 17-382 438-746 (1060)
31 PLN03218 maturation of RBCL 1; 99.9 7E-18 1.5E-22 157.0 34.6 311 17-384 473-783 (1060)
32 KOG0548 Molecular co-chaperone 99.9 1.3E-18 2.7E-23 142.6 25.0 328 20-392 6-463 (539)
33 KOG2003 TPR repeat-containing 99.8 1.1E-17 2.3E-22 134.7 28.4 285 20-370 423-709 (840)
34 KOG1173 Anaphase-promoting com 99.8 1E-18 2.2E-23 143.8 22.9 278 59-388 245-522 (611)
35 KOG0624 dsRNA-activated protei 99.8 8.4E-18 1.8E-22 130.3 26.2 322 11-390 33-376 (504)
36 COG2956 Predicted N-acetylgluc 99.8 4.4E-17 9.5E-22 125.2 29.8 302 22-382 41-345 (389)
37 KOG1129 TPR repeat-containing 99.8 7.9E-19 1.7E-23 135.0 20.2 285 54-389 177-463 (478)
38 PF13429 TPR_15: Tetratricopep 99.8 3.5E-20 7.6E-25 151.0 13.5 266 20-342 12-277 (280)
39 PF13429 TPR_15: Tetratricopep 99.8 2.1E-20 4.5E-25 152.4 11.8 265 63-384 13-277 (280)
40 PRK12370 invasion protein regu 99.8 1.3E-17 2.8E-22 148.1 29.7 251 29-340 274-533 (553)
41 KOG1941 Acetylcholine receptor 99.8 8E-17 1.7E-21 125.8 30.0 350 19-388 9-364 (518)
42 PRK12370 invasion protein regu 99.8 7.6E-18 1.6E-22 149.5 27.4 254 71-385 274-536 (553)
43 PRK04841 transcriptional regul 99.8 1.8E-16 4E-21 150.9 38.2 352 19-389 412-765 (903)
44 KOG0547 Translocase of outer m 99.8 3.4E-18 7.4E-23 138.3 21.6 247 13-303 323-570 (606)
45 TIGR00540 hemY_coli hemY prote 99.8 9.2E-17 2E-21 137.6 32.0 317 18-388 86-403 (409)
46 COG3063 PilF Tfp pilus assembl 99.8 1.4E-17 2.9E-22 122.1 22.4 206 55-300 32-237 (250)
47 KOG1129 TPR repeat-containing 99.8 1.8E-19 3.9E-24 138.5 12.6 233 20-300 227-459 (478)
48 cd05804 StaR_like StaR_like; a 99.8 1.6E-16 3.5E-21 134.8 31.9 339 12-391 2-343 (355)
49 PLN03081 pentatricopeptide (PP 99.8 6.5E-18 1.4E-22 155.1 23.7 306 17-384 190-557 (697)
50 KOG2003 TPR repeat-containing 99.8 2.4E-17 5.3E-22 132.7 23.3 267 62-386 423-691 (840)
51 TIGR02521 type_IV_pilW type IV 99.8 4.1E-17 8.9E-22 130.3 24.9 204 55-298 28-231 (234)
52 TIGR02521 type_IV_pilW type IV 99.8 3.7E-17 8.1E-22 130.5 24.5 206 11-256 26-231 (234)
53 KOG2076 RNA polymerase III tra 99.8 2.2E-16 4.8E-21 137.1 28.4 333 7-383 164-554 (895)
54 PRK11189 lipoprotein NlpI; Pro 99.8 2.8E-17 6.1E-22 134.0 21.8 213 5-257 53-265 (296)
55 COG3063 PilF Tfp pilus assembl 99.8 6E-17 1.3E-21 118.8 20.7 201 98-339 33-233 (250)
56 COG2956 Predicted N-acetylgluc 99.8 6.1E-16 1.3E-20 119.1 26.4 275 64-388 41-315 (389)
57 PRK11189 lipoprotein NlpI; Pro 99.8 2.3E-16 5E-21 128.7 26.0 227 29-299 39-265 (296)
58 KOG1174 Anaphase-promoting com 99.8 2.1E-16 4.7E-21 125.5 24.5 277 55-391 229-507 (564)
59 KOG1941 Acetylcholine receptor 99.8 2.8E-15 6.1E-20 117.3 29.3 309 18-341 45-359 (518)
60 PRK10747 putative protoheme IX 99.8 2.1E-15 4.5E-20 128.6 31.4 302 17-385 85-391 (398)
61 PRK04841 transcriptional regul 99.8 4.2E-15 9.2E-20 141.7 36.4 312 15-345 451-763 (903)
62 PLN03081 pentatricopeptide (PP 99.8 7.5E-17 1.6E-21 148.1 23.7 298 17-380 159-487 (697)
63 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.5E-20 138.5 28.4 330 16-390 102-519 (822)
64 KOG0548 Molecular co-chaperone 99.8 5.5E-15 1.2E-19 121.6 29.0 242 102-380 226-485 (539)
65 KOG4162 Predicted calmodulin-b 99.8 1.2E-14 2.6E-19 124.5 30.8 331 14-387 392-786 (799)
66 KOG1125 TPR repeat-containing 99.7 2.3E-16 5E-21 130.7 19.1 266 20-329 289-559 (579)
67 PRK14574 hmsH outer membrane p 99.7 8.4E-15 1.8E-19 133.1 30.5 148 230-388 329-483 (822)
68 KOG0624 dsRNA-activated protei 99.7 2E-14 4.4E-19 111.8 27.4 283 10-342 66-370 (504)
69 KOG1174 Anaphase-promoting com 99.7 6.4E-15 1.4E-19 117.3 25.0 270 13-342 229-500 (564)
70 PLN03077 Protein ECB2; Provisi 99.7 5.4E-15 1.2E-19 139.3 28.5 163 189-383 557-719 (857)
71 TIGR00540 hemY_coli hemY prote 99.7 1.1E-14 2.4E-19 124.9 27.2 284 13-344 115-401 (409)
72 PLN03077 Protein ECB2; Provisi 99.7 7.2E-15 1.6E-19 138.4 27.8 302 17-381 254-651 (857)
73 cd05804 StaR_like StaR_like; a 99.7 9E-14 2E-18 118.1 30.3 298 15-348 42-342 (355)
74 KOG0550 Molecular chaperone (D 99.7 3.4E-15 7.5E-20 118.7 19.7 293 12-343 45-351 (486)
75 KOG1125 TPR repeat-containing 99.7 2.4E-15 5.3E-20 124.7 19.1 270 63-375 290-562 (579)
76 KOG0550 Molecular chaperone (D 99.7 2.2E-15 4.7E-20 119.8 18.0 294 56-387 47-353 (486)
77 PRK10747 putative protoheme IX 99.7 1.3E-13 2.8E-18 117.6 29.0 266 19-343 121-391 (398)
78 TIGR03302 OM_YfiO outer membra 99.7 1.6E-14 3.5E-19 114.8 21.9 182 11-214 28-231 (235)
79 TIGR03302 OM_YfiO outer membra 99.7 4.1E-14 8.8E-19 112.5 22.2 182 95-298 28-231 (235)
80 KOG1156 N-terminal acetyltrans 99.7 1E-12 2.2E-17 110.8 29.9 325 10-386 35-436 (700)
81 KOG0495 HAT repeat protein [RN 99.7 8.9E-13 1.9E-17 111.3 28.4 323 9-391 509-853 (913)
82 PF14938 SNAP: Soluble NSF att 99.6 7.3E-13 1.6E-17 107.4 23.6 229 99-346 34-263 (282)
83 PF14938 SNAP: Soluble NSF att 99.6 4.2E-13 9.1E-18 108.8 22.2 192 55-256 32-224 (282)
84 KOG2376 Signal recognition par 99.6 9.3E-11 2E-15 98.2 33.4 349 16-389 110-492 (652)
85 KOG4162 Predicted calmodulin-b 99.6 7.3E-12 1.6E-16 107.8 27.5 288 17-344 479-785 (799)
86 PF12569 NARP1: NMDA receptor- 99.6 6E-11 1.3E-15 102.5 31.0 297 16-347 4-339 (517)
87 PLN02789 farnesyltranstransfer 99.6 1.9E-11 4E-16 99.7 26.5 221 13-283 34-268 (320)
88 KOG0495 HAT repeat protein [RN 99.6 2.2E-12 4.7E-17 109.1 21.4 313 17-389 551-885 (913)
89 PLN02789 farnesyltranstransfer 99.5 4.4E-11 9.6E-16 97.5 27.3 211 65-325 44-268 (320)
90 KOG3785 Uncharacterized conser 99.5 8E-11 1.7E-15 92.7 26.6 322 16-380 57-453 (557)
91 KOG1127 TPR repeat-containing 99.5 2.9E-12 6.3E-17 113.2 20.4 214 12-258 488-701 (1238)
92 KOG1156 N-terminal acetyltrans 99.5 9.4E-10 2E-14 93.4 32.1 319 11-380 70-464 (700)
93 PF12569 NARP1: NMDA receptor- 99.5 1.2E-10 2.7E-15 100.6 27.4 291 59-390 5-340 (517)
94 COG3071 HemY Uncharacterized e 99.5 1.1E-09 2.3E-14 87.8 30.3 302 20-385 88-391 (400)
95 PF13424 TPR_12: Tetratricopep 99.5 1.1E-12 2.3E-17 84.2 10.9 77 12-89 1-77 (78)
96 KOG1127 TPR repeat-containing 99.5 3.3E-10 7.2E-15 100.6 28.1 235 72-348 472-706 (1238)
97 KOG2376 Signal recognition par 99.5 2.5E-09 5.4E-14 89.9 31.7 329 20-387 83-449 (652)
98 PRK15179 Vi polysaccharide bio 99.5 3.7E-11 8E-16 107.7 22.6 157 113-300 62-218 (694)
99 PF13424 TPR_12: Tetratricopep 99.4 8.4E-13 1.8E-17 84.6 8.2 78 308-387 1-78 (78)
100 PRK15179 Vi polysaccharide bio 99.4 9.6E-11 2.1E-15 105.1 23.5 158 154-343 61-218 (694)
101 KOG1839 Uncharacterized protei 99.4 3.9E-11 8.5E-16 109.8 20.0 361 23-388 672-1132(1236)
102 PRK15359 type III secretion sy 99.4 3.2E-11 7E-16 86.9 15.0 125 162-323 13-137 (144)
103 PRK15359 type III secretion sy 99.4 6.4E-12 1.4E-16 90.6 10.9 95 19-129 27-121 (144)
104 KOG3785 Uncharacterized conser 99.4 5.8E-10 1.3E-14 87.9 21.3 312 26-383 32-421 (557)
105 PRK14720 transcript cleavage f 99.3 2.3E-10 5E-15 103.7 20.6 249 95-384 26-283 (906)
106 COG5010 TadD Flp pilus assembl 99.3 9.7E-11 2.1E-15 88.6 14.5 165 12-211 63-227 (257)
107 PRK14720 transcript cleavage f 99.3 9.3E-10 2E-14 99.9 23.4 251 8-300 23-284 (906)
108 KOG4340 Uncharacterized conser 99.3 5.5E-09 1.2E-13 80.6 23.8 206 11-252 39-265 (459)
109 PRK15363 pathogenicity island 99.3 2E-10 4.3E-15 81.0 14.7 107 8-130 26-133 (157)
110 COG5010 TadD Flp pilus assembl 99.3 2.3E-10 4.9E-15 86.6 15.4 164 55-253 64-227 (257)
111 PRK10370 formate-dependent nit 99.3 2E-10 4.4E-15 87.5 15.2 103 55-173 70-175 (198)
112 KOG1839 Uncharacterized protei 99.3 1E-09 2.2E-14 100.9 21.9 209 146-358 936-1144(1236)
113 KOG2047 mRNA splicing factor [ 99.3 2.4E-08 5.2E-13 85.1 28.4 338 12-383 244-614 (835)
114 KOG3617 WD40 and TPR repeat-co 99.3 2.7E-08 5.9E-13 87.3 29.4 260 95-389 853-1179(1416)
115 COG3071 HemY Uncharacterized e 99.3 3.5E-08 7.6E-13 79.3 27.1 274 13-345 115-393 (400)
116 PF13525 YfiO: Outer membrane 99.3 3.2E-09 7E-14 81.6 20.9 169 186-375 5-198 (203)
117 PF13525 YfiO: Outer membrane 99.3 3.9E-09 8.6E-14 81.1 21.2 166 142-329 5-195 (203)
118 PRK10370 formate-dependent nit 99.3 7.3E-10 1.6E-14 84.4 16.8 120 155-300 52-174 (198)
119 PRK15363 pathogenicity island 99.3 4.7E-10 1E-14 79.2 14.1 103 55-173 32-134 (157)
120 CHL00033 ycf3 photosystem I as 99.3 6.1E-10 1.3E-14 83.2 15.5 116 12-140 31-153 (168)
121 CHL00033 ycf3 photosystem I as 99.3 6.5E-10 1.4E-14 83.1 15.4 125 97-229 32-156 (168)
122 PRK10866 outer membrane biogen 99.3 1.5E-08 3.2E-13 79.8 23.6 187 16-252 32-236 (243)
123 PRK10866 outer membrane biogen 99.2 1.2E-08 2.6E-13 80.3 22.6 172 143-337 33-236 (243)
124 PF09976 TPR_21: Tetratricopep 99.2 4.9E-09 1.1E-13 76.1 18.3 123 112-255 23-145 (145)
125 KOG2047 mRNA splicing factor [ 99.2 2.1E-07 4.5E-12 79.6 29.6 324 15-389 386-724 (835)
126 KOG1128 Uncharacterized conser 99.2 1.8E-09 3.9E-14 93.0 17.8 225 15-304 397-621 (777)
127 KOG4340 Uncharacterized conser 99.2 1.4E-08 3E-13 78.5 20.5 188 69-300 21-208 (459)
128 TIGR02552 LcrH_SycD type III s 99.2 1.2E-09 2.6E-14 78.6 14.3 102 55-172 14-115 (135)
129 TIGR02552 LcrH_SycD type III s 99.2 1E-09 2.2E-14 79.0 14.0 108 6-129 7-114 (135)
130 KOG1128 Uncharacterized conser 99.2 3E-09 6.5E-14 91.7 18.4 225 57-347 397-621 (777)
131 KOG3060 Uncharacterized conser 99.2 1.2E-07 2.5E-12 71.7 24.3 193 29-257 25-220 (289)
132 KOG1585 Protein required for f 99.2 2.6E-07 5.7E-12 69.4 25.3 227 51-293 24-250 (308)
133 PF09976 TPR_21: Tetratricopep 99.2 7.5E-09 1.6E-13 75.1 17.1 131 20-169 15-145 (145)
134 KOG1585 Protein required for f 99.2 1.6E-07 3.4E-12 70.5 23.8 226 136-378 25-250 (308)
135 PF04733 Coatomer_E: Coatomer 99.2 5.2E-09 1.1E-13 84.5 17.7 263 24-356 9-274 (290)
136 KOG0553 TPR repeat-containing 99.2 6.3E-10 1.4E-14 86.0 11.7 102 12-129 77-178 (304)
137 PRK02603 photosystem I assembl 99.2 3.8E-09 8.3E-14 79.2 15.9 112 11-135 30-148 (172)
138 KOG3060 Uncharacterized conser 99.2 1.4E-07 3E-12 71.3 23.3 192 115-343 27-221 (289)
139 KOG0553 TPR repeat-containing 99.1 3.8E-09 8.1E-14 81.8 14.6 102 55-172 78-179 (304)
140 TIGR02795 tol_pal_ybgF tol-pal 99.1 4.4E-09 9.5E-14 73.9 13.4 103 17-129 3-105 (119)
141 TIGR02795 tol_pal_ybgF tol-pal 99.1 7.2E-09 1.6E-13 72.8 14.0 104 187-300 3-106 (119)
142 KOG3617 WD40 and TPR repeat-co 99.1 6.9E-07 1.5E-11 78.8 28.2 259 65-384 807-1109(1416)
143 PRK02603 photosystem I assembl 99.1 1.9E-08 4.2E-13 75.4 16.7 116 181-309 30-152 (172)
144 PF04733 Coatomer_E: Coatomer 99.1 6.2E-09 1.3E-13 84.0 14.4 240 11-311 30-272 (290)
145 KOG2300 Uncharacterized conser 99.0 1.7E-06 3.6E-11 71.8 26.9 255 28-295 287-552 (629)
146 KOG1915 Cell cycle control pro 99.0 5.9E-06 1.3E-10 68.5 31.3 320 19-389 76-438 (677)
147 KOG1915 Cell cycle control pro 99.0 7.6E-06 1.7E-10 67.9 30.6 221 138-389 318-541 (677)
148 PF12688 TPR_5: Tetratrico pep 99.0 2.4E-08 5.1E-13 68.4 12.7 102 101-214 2-103 (120)
149 COG2909 MalT ATP-dependent tra 99.0 1.1E-05 2.4E-10 72.3 31.6 340 12-380 343-684 (894)
150 PF12895 Apc3: Anaphase-promot 99.0 7.3E-09 1.6E-13 67.2 8.9 84 28-126 1-84 (84)
151 PF12688 TPR_5: Tetratrico pep 99.0 3.1E-08 6.6E-13 67.8 12.2 102 17-128 2-103 (120)
152 PLN03088 SGT1, suppressor of 99.0 1.2E-08 2.6E-13 85.6 12.4 95 19-129 5-99 (356)
153 COG4783 Putative Zn-dependent 99.0 1E-07 2.2E-12 79.0 17.3 128 186-338 306-433 (484)
154 PF10345 Cohesin_load: Cohesin 98.9 3.4E-05 7.3E-10 70.3 39.3 320 52-382 53-431 (608)
155 PF12895 Apc3: Anaphase-promot 98.9 1E-08 2.3E-13 66.5 8.6 83 71-168 2-84 (84)
156 PLN03088 SGT1, suppressor of 98.9 4.4E-08 9.5E-13 82.2 14.4 112 190-325 6-117 (356)
157 COG4783 Putative Zn-dependent 98.9 2.2E-05 4.7E-10 65.6 30.3 151 140-342 304-454 (484)
158 KOG0543 FKBP-type peptidyl-pro 98.9 1.1E-07 2.4E-12 77.1 14.7 142 15-172 207-356 (397)
159 PF10345 Cohesin_load: Cohesin 98.9 5.4E-05 1.2E-09 68.9 40.8 356 8-373 51-467 (608)
160 PF13414 TPR_11: TPR repeat; P 98.9 2.2E-08 4.7E-13 62.3 8.4 64 100-171 3-67 (69)
161 PF13414 TPR_11: TPR repeat; P 98.9 3.2E-08 7E-13 61.5 9.0 64 58-129 3-67 (69)
162 PRK10803 tol-pal system protei 98.9 1.2E-07 2.7E-12 75.2 13.9 104 229-343 143-247 (263)
163 PRK10803 tol-pal system protei 98.8 2.7E-07 5.9E-12 73.2 15.1 103 188-300 144-247 (263)
164 KOG2300 Uncharacterized conser 98.8 4.2E-05 9.1E-10 63.8 33.0 249 112-380 287-552 (629)
165 KOG1586 Protein required for f 98.8 3E-06 6.5E-11 63.4 18.0 201 152-389 24-229 (288)
166 COG4785 NlpI Lipoprotein NlpI, 98.8 3.1E-06 6.8E-11 62.6 17.9 208 9-256 58-265 (297)
167 cd00189 TPR Tetratricopeptide 98.8 6.9E-08 1.5E-12 64.9 9.3 96 60-171 2-97 (100)
168 cd00189 TPR Tetratricopeptide 98.8 2E-07 4.4E-12 62.5 11.6 96 188-299 2-97 (100)
169 KOG1070 rRNA processing protei 98.8 2.4E-06 5.2E-11 79.6 20.8 214 138-388 1454-1667(1710)
170 KOG0543 FKBP-type peptidyl-pro 98.8 4.6E-07 9.9E-12 73.7 14.2 138 189-342 211-355 (397)
171 KOG1070 rRNA processing protei 98.8 2.1E-05 4.6E-10 73.7 26.2 229 55-325 1455-1683(1710)
172 PF13432 TPR_16: Tetratricopep 98.8 5.9E-08 1.3E-12 59.4 7.3 60 233-300 2-61 (65)
173 COG4785 NlpI Lipoprotein NlpI, 98.7 4.5E-06 9.7E-11 61.8 17.5 205 54-299 61-266 (297)
174 COG2909 MalT ATP-dependent tra 98.7 5.4E-05 1.2E-09 68.1 27.2 264 61-338 418-684 (894)
175 KOG3616 Selective LIM binding 98.7 3.9E-05 8.4E-10 67.5 25.5 210 17-256 662-910 (1636)
176 COG4105 ComL DNA uptake lipopr 98.7 2.2E-05 4.8E-10 60.4 21.4 170 142-334 34-225 (254)
177 KOG1586 Protein required for f 98.7 1.9E-05 4.1E-10 59.3 20.3 191 11-211 29-220 (288)
178 PRK15331 chaperone protein Sic 98.7 3.6E-07 7.9E-12 65.1 10.9 105 8-128 29-133 (165)
179 PF13432 TPR_16: Tetratricopep 98.7 1.2E-07 2.5E-12 58.1 7.4 59 63-129 2-60 (65)
180 KOG4555 TPR repeat-containing 98.7 3.2E-06 7E-11 57.0 14.1 99 103-215 46-144 (175)
181 KOG4555 TPR repeat-containing 98.7 1.3E-06 2.7E-11 58.9 11.7 104 273-389 46-149 (175)
182 COG1729 Uncharacterized protei 98.7 1.3E-06 2.7E-11 67.7 13.2 102 231-343 144-245 (262)
183 PRK10153 DNA-binding transcrip 98.6 3.5E-06 7.5E-11 74.0 17.2 130 19-171 342-482 (517)
184 COG4105 ComL DNA uptake lipopr 98.6 4.5E-05 9.8E-10 58.7 20.6 170 187-377 35-226 (254)
185 KOG3081 Vesicle coat complex C 98.6 0.00011 2.3E-09 56.7 24.5 250 19-337 12-265 (299)
186 KOG1464 COP9 signalosome, subu 98.6 1.5E-05 3.2E-10 61.4 17.3 241 72-326 41-286 (440)
187 COG1729 Uncharacterized protei 98.6 4.9E-07 1.1E-11 69.9 9.5 104 273-387 144-247 (262)
188 PF08631 SPO22: Meiosis protei 98.6 0.00023 5E-09 57.9 27.6 256 110-382 3-273 (278)
189 PRK15331 chaperone protein Sic 98.6 1.1E-06 2.3E-11 62.8 9.9 101 54-170 33-133 (165)
190 PRK10153 DNA-binding transcrip 98.5 9.6E-06 2.1E-10 71.3 16.6 131 60-215 341-482 (517)
191 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 6.5E-06 1.4E-10 69.1 14.7 120 191-338 174-293 (395)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 7.4E-06 1.6E-10 68.8 14.9 120 148-296 175-294 (395)
193 PRK11906 transcriptional regul 98.5 1.3E-05 2.9E-10 67.1 16.2 162 19-211 258-432 (458)
194 PF08631 SPO22: Meiosis protei 98.5 0.00042 9.1E-09 56.4 26.7 255 26-298 3-274 (278)
195 KOG1464 COP9 signalosome, subu 98.5 5.4E-05 1.2E-09 58.4 17.4 225 9-242 58-286 (440)
196 COG4700 Uncharacterized protei 98.5 8.6E-05 1.9E-09 53.8 17.3 131 229-382 90-220 (251)
197 COG4235 Cytochrome c biogenesi 98.5 6.5E-06 1.4E-10 64.7 12.7 106 265-386 151-258 (287)
198 COG4235 Cytochrome c biogenesi 98.5 8.6E-06 1.9E-10 64.0 13.4 120 11-150 151-273 (287)
199 COG4700 Uncharacterized protei 98.5 7.7E-05 1.7E-09 54.1 16.9 136 58-217 89-224 (251)
200 PF13512 TPR_18: Tetratricopep 98.4 1.1E-05 2.4E-10 56.3 12.0 90 228-327 10-99 (142)
201 PF13512 TPR_18: Tetratricopep 98.4 2.2E-05 4.9E-10 54.8 13.4 103 188-300 12-129 (142)
202 KOG3616 Selective LIM binding 98.4 0.0011 2.4E-08 58.9 30.6 212 145-386 664-913 (1636)
203 KOG4234 TPR repeat-containing 98.4 1.4E-05 3.1E-10 58.4 12.5 101 144-257 97-197 (271)
204 KOG4234 TPR repeat-containing 98.4 1.9E-05 4.2E-10 57.8 12.5 103 16-129 95-197 (271)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 3.6E-06 7.7E-11 70.3 10.0 72 95-171 70-141 (453)
206 KOG2471 TPR repeat-containing 98.4 0.0001 2.2E-09 61.7 18.2 320 19-367 20-381 (696)
207 KOG2471 TPR repeat-containing 98.4 0.00099 2.1E-08 56.1 23.5 296 59-381 241-681 (696)
208 PF13374 TPR_10: Tetratricopep 98.4 1E-06 2.2E-11 48.4 4.5 41 270-310 2-42 (42)
209 KOG2796 Uncharacterized conser 98.3 0.00015 3.4E-09 55.7 17.1 176 106-300 128-316 (366)
210 KOG2796 Uncharacterized conser 98.3 0.00059 1.3E-08 52.6 20.1 138 101-257 178-315 (366)
211 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.9E-06 6.4E-11 70.8 8.6 72 11-87 70-141 (453)
212 KOG3081 Vesicle coat complex C 98.3 0.00059 1.3E-08 52.7 19.9 154 61-255 111-268 (299)
213 COG5159 RPN6 26S proteasome re 98.3 0.00074 1.6E-08 52.7 20.3 228 63-302 8-238 (421)
214 COG3898 Uncharacterized membra 98.3 0.0013 2.7E-08 53.9 30.1 298 23-383 91-391 (531)
215 PF13374 TPR_10: Tetratricopep 98.3 2.6E-06 5.6E-11 46.7 4.8 41 228-268 2-42 (42)
216 PF10300 DUF3808: Protein of u 98.3 0.0026 5.6E-08 55.9 32.3 183 154-362 200-396 (468)
217 PF14559 TPR_19: Tetratricopep 98.2 5.7E-06 1.2E-10 51.1 6.6 53 69-129 2-54 (68)
218 COG0457 NrfG FOG: TPR repeat [ 98.2 0.0015 3.2E-08 52.3 25.5 203 18-256 61-264 (291)
219 PF12968 DUF3856: Domain of Un 98.2 0.00046 1E-08 45.9 15.8 123 100-222 7-136 (144)
220 PF13371 TPR_9: Tetratricopept 98.2 1.5E-05 3.3E-10 50.0 8.1 57 65-129 2-58 (73)
221 PF10300 DUF3808: Protein of u 98.2 0.00066 1.4E-08 59.5 20.7 176 28-228 200-389 (468)
222 PRK11906 transcriptional regul 98.2 7.5E-05 1.6E-09 62.8 13.8 133 10-167 289-432 (458)
223 PF14559 TPR_19: Tetratricopep 98.2 9.6E-06 2.1E-10 50.1 6.7 53 111-171 2-54 (68)
224 PF13371 TPR_9: Tetratricopept 98.2 1.6E-05 3.4E-10 50.0 7.8 59 234-300 1-59 (73)
225 KOG2610 Uncharacterized conser 98.1 0.001 2.2E-08 53.2 18.1 166 64-255 109-274 (491)
226 COG0457 NrfG FOG: TPR repeat [ 98.1 0.0029 6.3E-08 50.5 26.2 228 30-300 37-266 (291)
227 KOG4648 Uncharacterized conser 98.1 4E-05 8.6E-10 61.1 9.8 96 61-172 100-195 (536)
228 PF02259 FAT: FAT domain; Int 98.1 0.0053 1.2E-07 52.4 26.9 285 65-387 5-341 (352)
229 KOG2041 WD40 repeat protein [G 98.0 0.0059 1.3E-07 54.1 22.6 179 17-252 693-876 (1189)
230 KOG2610 Uncharacterized conser 98.0 0.0045 9.9E-08 49.7 22.4 160 28-213 115-274 (491)
231 KOG1463 26S proteasome regulat 98.0 0.0048 1E-07 49.6 27.1 314 21-363 9-329 (411)
232 KOG4648 Uncharacterized conser 98.0 3.8E-05 8.3E-10 61.2 8.2 94 20-129 101-194 (536)
233 COG2976 Uncharacterized protei 98.0 0.0025 5.4E-08 47.0 16.3 99 143-257 90-188 (207)
234 PF12968 DUF3856: Domain of Un 98.0 0.0017 3.7E-08 43.3 16.7 119 57-175 6-133 (144)
235 PF03704 BTAD: Bacterial trans 97.9 0.0013 2.8E-08 47.9 15.0 111 19-137 9-133 (146)
236 PF03704 BTAD: Bacterial trans 97.9 0.0016 3.5E-08 47.3 15.2 113 145-265 9-133 (146)
237 KOG4642 Chaperone-dependent E3 97.9 0.00012 2.7E-09 55.3 9.1 102 16-133 10-111 (284)
238 PF09986 DUF2225: Uncharacteri 97.9 0.0012 2.6E-08 50.9 14.7 102 152-256 87-193 (214)
239 PF09986 DUF2225: Uncharacteri 97.9 0.0002 4.4E-09 55.1 10.4 101 283-385 90-195 (214)
240 KOG0545 Aryl-hydrocarbon recep 97.9 0.0007 1.5E-08 51.6 12.5 106 16-129 178-293 (329)
241 COG3898 Uncharacterized membra 97.9 0.0098 2.1E-07 49.0 26.8 267 65-386 91-360 (531)
242 PF04184 ST7: ST7 protein; In 97.9 0.013 2.9E-07 50.0 21.0 128 66-211 176-320 (539)
243 KOG4642 Chaperone-dependent E3 97.9 0.00013 2.8E-09 55.2 8.4 99 61-175 13-111 (284)
244 PF10602 RPN7: 26S proteasome 97.9 0.0042 9E-08 46.5 16.5 112 54-172 32-143 (177)
245 PF10602 RPN7: 26S proteasome 97.8 0.0054 1.2E-07 45.9 16.7 110 96-214 32-141 (177)
246 COG2976 Uncharacterized protei 97.8 0.0043 9.3E-08 45.8 15.3 139 20-172 35-189 (207)
247 PF04184 ST7: ST7 protein; In 97.8 0.0073 1.6E-07 51.5 18.7 147 107-296 175-321 (539)
248 PF13281 DUF4071: Domain of un 97.7 0.019 4E-07 48.1 23.8 205 115-342 114-334 (374)
249 PF13281 DUF4071: Domain of un 97.7 0.019 4.1E-07 48.0 22.7 205 31-257 114-334 (374)
250 COG5159 RPN6 26S proteasome re 97.7 0.014 3.1E-07 45.9 24.9 228 20-258 7-236 (421)
251 PF12862 Apc5: Anaphase-promot 97.7 0.0017 3.6E-08 42.9 11.1 82 110-195 8-90 (94)
252 PF13176 TPR_7: Tetratricopept 97.7 8.3E-05 1.8E-09 38.8 4.0 32 357-388 1-32 (36)
253 KOG0551 Hsp90 co-chaperone CNS 97.7 0.0011 2.4E-08 53.0 11.4 107 12-130 77-183 (390)
254 KOG0545 Aryl-hydrocarbon recep 97.6 0.0016 3.6E-08 49.7 11.2 107 57-171 177-293 (329)
255 PF13176 TPR_7: Tetratricopept 97.6 0.00029 6.2E-09 36.7 4.8 31 144-174 1-31 (36)
256 PF12862 Apc5: Anaphase-promot 97.6 0.0016 3.4E-08 43.0 9.4 82 238-321 8-90 (94)
257 PF00515 TPR_1: Tetratricopept 97.6 9.2E-05 2E-09 38.1 2.8 32 356-387 2-33 (34)
258 KOG0985 Vesicle coat protein c 97.5 0.08 1.7E-06 49.6 23.9 144 100-297 1104-1247(1666)
259 PF02259 FAT: FAT domain; Int 97.5 0.046 1E-06 46.6 27.3 132 138-283 142-305 (352)
260 KOG2041 WD40 repeat protein [G 97.5 0.03 6.4E-07 49.9 18.0 64 100-168 692-760 (1189)
261 PF00515 TPR_1: Tetratricopept 97.4 0.00042 9.1E-09 35.6 4.5 30 16-45 1-30 (34)
262 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0033 7.2E-08 50.4 11.0 105 140-258 79-183 (390)
263 PF13428 TPR_14: Tetratricopep 97.4 0.00058 1.3E-08 37.6 5.0 42 229-278 2-43 (44)
264 PF13428 TPR_14: Tetratricopep 97.4 0.00052 1.1E-08 37.8 4.7 42 59-108 2-43 (44)
265 PF07719 TPR_2: Tetratricopept 97.4 0.0006 1.3E-08 35.0 4.5 31 16-46 1-31 (34)
266 PF05843 Suf: Suppressor of fo 97.3 0.0082 1.8E-07 49.0 12.9 136 230-387 3-139 (280)
267 PF07719 TPR_2: Tetratricopept 97.3 0.00024 5.1E-09 36.5 2.7 32 356-387 2-33 (34)
268 KOG2053 Mitochondrial inherita 97.3 0.14 3E-06 47.2 24.0 191 112-338 21-215 (932)
269 PF13431 TPR_17: Tetratricopep 97.3 0.00029 6.3E-09 36.1 2.6 32 81-120 2-33 (34)
270 PF13431 TPR_17: Tetratricopep 97.3 0.00025 5.4E-09 36.3 2.3 32 123-162 2-33 (34)
271 KOG1550 Extracellular protein 97.2 0.15 3.3E-06 46.2 23.4 283 31-385 227-539 (552)
272 PF06552 TOM20_plant: Plant sp 97.2 0.012 2.5E-07 43.1 10.9 79 224-303 21-106 (186)
273 KOG0985 Vesicle coat protein c 97.2 0.2 4.3E-06 47.2 23.4 58 59-129 1105-1162(1666)
274 PF06552 TOM20_plant: Plant sp 97.2 0.0075 1.6E-07 44.1 9.6 92 74-174 7-105 (186)
275 PF05843 Suf: Suppressor of fo 97.1 0.05 1.1E-06 44.5 15.2 134 60-216 3-137 (280)
276 PF13181 TPR_8: Tetratricopept 97.1 0.0011 2.3E-08 34.0 3.7 31 356-386 2-32 (34)
277 KOG3783 Uncharacterized conser 97.1 0.18 3.8E-06 43.9 22.8 258 20-300 235-521 (546)
278 PF13181 TPR_8: Tetratricopept 97.1 0.0025 5.5E-08 32.6 4.8 31 143-173 2-32 (34)
279 KOG1463 26S proteasome regulat 97.0 0.15 3.2E-06 41.5 27.4 284 17-326 49-335 (411)
280 COG3118 Thioredoxin domain-con 96.9 0.12 2.6E-06 41.3 14.9 152 146-329 138-289 (304)
281 KOG2053 Mitochondrial inherita 96.9 0.38 8.3E-06 44.6 30.2 231 27-298 20-254 (932)
282 PF10579 Rapsyn_N: Rapsyn N-te 96.7 0.06 1.3E-06 33.3 10.1 69 19-92 9-77 (80)
283 KOG1538 Uncharacterized conser 96.7 0.43 9.3E-06 42.7 20.6 150 105-295 637-798 (1081)
284 KOG1550 Extracellular protein 96.7 0.48 1.1E-05 43.1 19.7 187 157-389 227-431 (552)
285 PF10579 Rapsyn_N: Rapsyn N-te 96.5 0.07 1.5E-06 33.0 8.8 66 63-133 11-76 (80)
286 PRK14707 hypothetical protein; 96.5 1.3 2.9E-05 45.6 22.3 298 20-328 835-1141(2710)
287 PF10516 SHNi-TPR: SHNi-TPR; 96.4 0.011 2.4E-07 30.9 4.3 35 17-51 2-36 (38)
288 PF10516 SHNi-TPR: SHNi-TPR; 96.4 0.016 3.6E-07 30.2 4.9 36 271-306 2-37 (38)
289 COG3118 Thioredoxin domain-con 96.4 0.36 7.9E-06 38.7 16.8 126 105-256 139-264 (304)
290 KOG0376 Serine-threonine phosp 96.3 0.014 3.1E-07 49.5 6.7 94 63-172 9-102 (476)
291 KOG1538 Uncharacterized conser 96.3 0.76 1.6E-05 41.2 17.1 114 107-254 710-830 (1081)
292 PF13174 TPR_6: Tetratricopept 96.3 0.0035 7.5E-08 31.8 2.0 31 356-386 1-31 (33)
293 COG4649 Uncharacterized protei 96.2 0.3 6.4E-06 35.7 12.8 148 107-298 46-195 (221)
294 PF04910 Tcf25: Transcriptiona 96.2 0.62 1.3E-05 39.6 16.0 154 10-172 34-223 (360)
295 PF13174 TPR_6: Tetratricopept 96.2 0.012 2.5E-07 29.7 3.9 30 17-46 1-30 (33)
296 PRK14707 hypothetical protein; 96.2 1.9 4.2E-05 44.5 23.6 336 22-373 795-1143(2710)
297 KOG3783 Uncharacterized conser 96.1 0.84 1.8E-05 39.9 24.6 251 109-385 240-521 (546)
298 PF09613 HrpB1_HrpK: Bacterial 96.0 0.3 6.4E-06 35.4 11.2 88 184-287 8-95 (160)
299 PF04910 Tcf25: Transcriptiona 96.0 0.81 1.7E-05 39.0 19.1 154 138-300 36-223 (360)
300 PF11207 DUF2989: Protein of u 95.9 0.49 1.1E-05 35.8 12.2 99 257-375 100-198 (203)
301 KOG0376 Serine-threonine phosp 95.7 0.019 4.1E-07 48.8 4.9 94 20-129 8-101 (476)
302 KOG1308 Hsp70-interacting prot 95.7 0.0052 1.1E-07 49.6 1.6 91 65-171 121-211 (377)
303 PF11817 Foie-gras_1: Foie gra 95.7 0.86 1.9E-05 36.5 21.1 188 103-295 13-243 (247)
304 PF04781 DUF627: Protein of un 95.6 0.32 6.8E-06 32.7 9.2 102 64-171 2-107 (111)
305 KOG4322 Anaphase-promoting com 95.6 1.2 2.7E-05 37.7 23.4 195 95-298 268-470 (482)
306 PF04781 DUF627: Protein of un 95.4 0.41 9E-06 32.1 9.2 100 22-127 2-105 (111)
307 PF08424 NRDE-2: NRDE-2, neces 95.4 1.4 3E-05 37.0 19.0 149 223-385 14-184 (321)
308 COG4649 Uncharacterized protei 95.3 0.79 1.7E-05 33.6 14.0 124 240-383 70-195 (221)
309 PF09613 HrpB1_HrpK: Bacterial 95.3 0.48 1E-05 34.4 10.0 89 55-159 7-95 (160)
310 KOG4507 Uncharacterized conser 95.2 0.081 1.8E-06 46.3 6.9 95 20-129 611-705 (886)
311 PF11207 DUF2989: Protein of u 95.1 1 2.2E-05 34.1 13.5 78 243-333 121-198 (203)
312 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.33 7.2E-06 27.7 6.9 30 271-300 2-31 (53)
313 PF14853 Fis1_TPR_C: Fis1 C-te 94.9 0.036 7.9E-07 31.6 2.9 37 356-392 2-38 (53)
314 KOG0687 26S proteasome regulat 94.9 1.7 3.8E-05 35.5 13.3 111 183-300 101-211 (393)
315 KOG4814 Uncharacterized conser 94.8 3 6.6E-05 37.6 31.1 104 18-131 356-459 (872)
316 smart00028 TPR Tetratricopepti 94.7 0.052 1.1E-06 26.7 3.2 29 17-45 2-30 (34)
317 TIGR02561 HrpB1_HrpK type III 94.7 1 2.2E-05 32.2 10.1 86 186-287 10-95 (153)
318 KOG0686 COP9 signalosome, subu 94.7 0.36 7.9E-06 40.4 9.0 107 14-127 148-256 (466)
319 KOG1308 Hsp70-interacting prot 94.7 0.011 2.4E-07 47.8 0.5 93 21-129 119-211 (377)
320 PF07721 TPR_4: Tetratricopept 94.6 0.06 1.3E-06 25.4 2.8 24 271-294 2-25 (26)
321 PF08424 NRDE-2: NRDE-2, neces 94.6 2.4 5.2E-05 35.6 19.0 147 96-257 15-183 (321)
322 smart00028 TPR Tetratricopepti 94.6 0.061 1.3E-06 26.5 3.2 29 101-129 2-30 (34)
323 PF00244 14-3-3: 14-3-3 protei 94.6 1.9 4E-05 34.3 21.4 185 61-260 4-201 (236)
324 COG0790 FOG: TPR repeat, SEL1 94.6 2.3 4.9E-05 35.2 20.7 166 27-242 52-236 (292)
325 KOG3364 Membrane protein invol 94.5 0.15 3.4E-06 35.3 5.5 76 311-391 31-107 (149)
326 PF07721 TPR_4: Tetratricopept 94.5 0.044 9.5E-07 25.9 2.2 24 357-380 3-26 (26)
327 PF10952 DUF2753: Protein of u 94.3 1.1 2.4E-05 30.6 9.4 74 273-347 4-84 (140)
328 PF11817 Foie-gras_1: Foie gra 94.2 2.4 5.3E-05 34.0 22.9 91 115-211 153-243 (247)
329 COG0790 FOG: TPR repeat, SEL1 94.2 2.8 6.1E-05 34.7 21.3 167 68-284 51-236 (292)
330 KOG0508 Ankyrin repeat protein 94.1 0.22 4.7E-06 42.5 6.8 137 186-325 245-392 (615)
331 PF14561 TPR_20: Tetratricopep 94.1 0.99 2.1E-05 29.4 9.3 72 266-365 18-89 (90)
332 COG5187 RPN7 26S proteasome re 94.1 2.5 5.5E-05 34.0 13.7 134 157-301 90-223 (412)
333 PF12739 TRAPPC-Trs85: ER-Golg 94.0 3.9 8.4E-05 35.9 18.2 178 144-345 210-402 (414)
334 KOG4507 Uncharacterized conser 94.0 0.2 4.3E-06 44.1 6.4 94 64-172 613-706 (886)
335 KOG4322 Anaphase-promoting com 93.9 3.7 8E-05 35.1 26.4 195 137-340 268-469 (482)
336 KOG0686 COP9 signalosome, subu 93.6 1.9 4.1E-05 36.4 11.1 108 98-212 148-255 (466)
337 KOG0687 26S proteasome regulat 93.6 3.5 7.5E-05 33.8 14.3 131 35-174 83-213 (393)
338 PF15015 NYD-SP12_N: Spermatog 93.6 2.5 5.4E-05 36.0 11.7 104 19-130 179-292 (569)
339 TIGR02561 HrpB1_HrpK type III 93.3 2.1 4.6E-05 30.6 9.6 87 57-159 9-95 (153)
340 PF00244 14-3-3: 14-3-3 protei 93.3 3.4 7.4E-05 32.8 20.7 185 103-304 4-203 (236)
341 COG3629 DnrI DNA-binding trans 93.2 2.2 4.8E-05 34.5 10.7 77 227-311 152-228 (280)
342 PF15015 NYD-SP12_N: Spermatog 93.1 3.7 8E-05 35.0 11.9 107 186-300 176-292 (569)
343 PRK10941 hypothetical protein; 92.7 3.3 7.1E-05 33.6 11.1 74 228-314 181-254 (269)
344 PF14561 TPR_20: Tetratricopep 92.7 1.8 4E-05 28.1 9.8 33 224-256 18-50 (90)
345 PRK10941 hypothetical protein; 92.5 3.8 8.1E-05 33.3 11.2 67 56-130 179-245 (269)
346 PF04190 DUF410: Protein of un 92.5 4.9 0.00011 32.5 21.8 207 149-370 17-243 (260)
347 KOG2114 Vacuolar assembly/sort 92.3 9.4 0.0002 35.9 14.3 49 38-87 349-397 (933)
348 PF10255 Paf67: RNA polymerase 92.2 0.38 8.2E-06 41.1 5.6 72 61-132 125-196 (404)
349 KOG1914 mRNA cleavage and poly 92.2 8 0.00017 34.4 28.6 68 10-86 14-81 (656)
350 PF10952 DUF2753: Protein of u 92.2 2.7 5.8E-05 28.8 10.7 74 189-262 4-84 (140)
351 PF10255 Paf67: RNA polymerase 92.1 0.44 9.6E-06 40.7 5.8 72 19-90 125-196 (404)
352 KOG0890 Protein kinase of the 91.9 20 0.00044 38.3 29.4 111 266-387 1666-1787(2382)
353 KOG2581 26S proteasome regulat 91.8 7.4 0.00016 33.1 15.5 140 69-216 137-277 (493)
354 TIGR03504 FimV_Cterm FimV C-te 91.8 1.2 2.7E-05 24.2 5.4 25 146-170 3-27 (44)
355 PF04053 Coatomer_WDAD: Coatom 91.7 7.5 0.00016 34.3 13.0 26 101-126 348-373 (443)
356 COG5187 RPN7 26S proteasome re 91.5 6.3 0.00014 31.8 14.3 132 34-174 93-224 (412)
357 PF12739 TRAPPC-Trs85: ER-Golg 91.4 9.3 0.0002 33.6 20.5 176 18-217 210-401 (414)
358 KOG0508 Ankyrin repeat protein 91.4 0.19 4.1E-06 42.8 3.0 138 142-282 245-391 (615)
359 COG3629 DnrI DNA-binding trans 91.3 6.9 0.00015 31.8 12.2 74 56-137 151-224 (280)
360 PF12854 PPR_1: PPR repeat 91.0 0.33 7.2E-06 24.6 2.6 27 355-381 7-33 (34)
361 KOG3364 Membrane protein invol 91.0 4.1 8.9E-05 28.7 9.6 68 227-300 31-101 (149)
362 TIGR03504 FimV_Cterm FimV C-te 90.6 0.68 1.5E-05 25.2 3.6 25 190-214 3-27 (44)
363 PRK13184 pknD serine/threonine 90.5 3.1 6.8E-05 40.2 10.2 110 149-272 482-591 (932)
364 KOG4563 Cell cycle-regulated h 90.3 2.1 4.6E-05 35.5 7.8 66 15-80 40-105 (400)
365 cd02682 MIT_AAA_Arch MIT: doma 90.3 3 6.5E-05 25.9 7.3 42 143-184 7-48 (75)
366 COG3947 Response regulator con 90.0 6.7 0.00015 31.8 10.0 73 187-267 280-352 (361)
367 PF12854 PPR_1: PPR repeat 90.0 1.1 2.3E-05 22.8 4.0 26 142-167 7-32 (34)
368 KOG1497 COP9 signalosome, subu 89.7 10 0.00022 31.2 15.6 107 226-336 101-208 (399)
369 KOG3824 Huntingtin interacting 89.7 1.3 2.8E-05 35.8 6.0 59 63-129 121-179 (472)
370 KOG2561 Adaptor protein NUB1, 89.5 13 0.00028 32.1 14.9 133 57-219 162-300 (568)
371 COG3947 Response regulator con 89.4 7.7 0.00017 31.5 9.9 72 231-310 282-353 (361)
372 KOG1914 mRNA cleavage and poly 89.4 15 0.00033 32.7 23.3 211 20-259 290-503 (656)
373 PF13041 PPR_2: PPR repeat fam 89.2 2.6 5.5E-05 23.6 6.2 28 229-256 4-31 (50)
374 KOG2908 26S proteasome regulat 88.9 12 0.00027 31.0 11.9 96 195-293 84-180 (380)
375 KOG2561 Adaptor protein NUB1, 88.8 6.9 0.00015 33.6 9.8 119 185-303 162-300 (568)
376 PF04053 Coatomer_WDAD: Coatom 88.8 16 0.00035 32.3 15.4 96 145-290 298-393 (443)
377 cd02679 MIT_spastin MIT: domai 88.3 2.4 5.2E-05 26.7 5.4 62 316-389 12-73 (79)
378 PF13041 PPR_2: PPR repeat fam 88.2 2.9 6.2E-05 23.4 5.4 28 271-298 4-31 (50)
379 PF09670 Cas_Cas02710: CRISPR- 87.7 18 0.00038 31.4 16.8 140 17-174 132-273 (379)
380 PF01535 PPR: PPR repeat; Int 87.6 0.71 1.5E-05 22.4 2.4 27 357-383 2-28 (31)
381 KOG4814 Uncharacterized conser 87.4 23 0.0005 32.4 30.5 106 229-345 355-460 (872)
382 KOG3824 Huntingtin interacting 87.3 4 8.6E-05 33.2 7.2 60 190-257 120-179 (472)
383 PF01535 PPR: PPR repeat; Int 86.6 1.5 3.3E-05 21.1 3.3 27 144-170 2-28 (31)
384 PF09670 Cas_Cas02710: CRISPR- 86.1 22 0.00047 30.8 15.0 139 231-388 134-274 (379)
385 COG4976 Predicted methyltransf 86.0 1.6 3.4E-05 33.8 4.3 55 67-129 4-58 (287)
386 PHA02537 M terminase endonucle 85.7 2.5 5.5E-05 33.1 5.4 108 278-388 91-211 (230)
387 COG4976 Predicted methyltransf 85.5 1.7 3.7E-05 33.6 4.3 56 24-87 3-58 (287)
388 KOG4563 Cell cycle-regulated h 85.4 3.3 7.2E-05 34.5 6.1 62 229-290 42-103 (400)
389 PF04190 DUF410: Protein of un 85.2 19 0.00041 29.3 23.7 220 11-242 5-242 (260)
390 TIGR00756 PPR pentatricopeptid 85.1 1.5 3.3E-05 21.8 3.0 27 357-383 2-28 (35)
391 KOG0890 Protein kinase of the 84.6 64 0.0014 35.0 28.6 112 224-345 1666-1787(2382)
392 PF07720 TPR_3: Tetratricopept 84.4 1.8 3.9E-05 22.4 2.9 30 356-385 2-33 (36)
393 KOG2114 Vacuolar assembly/sort 84.1 40 0.00086 32.1 18.3 49 164-215 349-397 (933)
394 KOG4014 Uncharacterized conser 84.1 16 0.00034 27.5 13.5 150 122-305 50-239 (248)
395 TIGR00756 PPR pentatricopeptid 83.9 3.3 7.1E-05 20.5 3.9 27 144-170 2-28 (35)
396 KOG2908 26S proteasome regulat 83.2 26 0.00056 29.3 17.7 95 151-250 84-179 (380)
397 KOG2422 Uncharacterized conser 82.9 36 0.00079 30.8 17.3 178 112-300 250-449 (665)
398 KOG1258 mRNA processing protei 82.0 40 0.00086 30.6 32.1 178 185-389 296-475 (577)
399 PF08626 TRAPPC9-Trs120: Trans 82.0 66 0.0014 33.1 22.5 155 100-258 242-475 (1185)
400 PRK09169 hypothetical protein; 81.9 82 0.0018 34.2 23.9 14 230-243 584-597 (2316)
401 smart00101 14_3_3 14-3-3 homol 80.9 27 0.00059 27.9 22.2 182 146-343 5-201 (244)
402 cd02683 MIT_1 MIT: domain cont 80.3 12 0.00026 23.5 7.9 38 145-182 9-46 (77)
403 KOG1310 WD40 repeat protein [G 80.3 19 0.00042 32.0 8.9 93 62-170 378-473 (758)
404 PF07720 TPR_3: Tetratricopept 80.2 6.4 0.00014 20.3 4.5 23 18-40 3-25 (36)
405 PRK09169 hypothetical protein; 79.9 97 0.0021 33.7 22.3 17 230-246 626-642 (2316)
406 PF13812 PPR_3: Pentatricopept 78.9 6.2 0.00013 19.4 4.2 27 144-170 3-29 (34)
407 KOG1310 WD40 repeat protein [G 78.3 18 0.00038 32.3 8.1 99 14-128 372-473 (758)
408 KOG1497 COP9 signalosome, subu 78.2 38 0.00082 28.1 18.2 109 140-254 101-210 (399)
409 KOG4521 Nuclear pore complex, 77.8 80 0.0017 31.6 20.0 189 144-345 922-1135(1480)
410 PF08626 TRAPPC9-Trs120: Trans 77.2 94 0.002 32.1 22.0 155 141-301 241-476 (1185)
411 PF07079 DUF1347: Protein of u 76.8 52 0.0011 29.0 34.4 139 18-172 8-158 (549)
412 PF05053 Menin: Menin; InterP 76.4 60 0.0013 29.5 13.8 76 99-177 276-353 (618)
413 cd02681 MIT_calpain7_1 MIT: do 75.9 17 0.00036 22.8 7.7 30 190-219 10-39 (76)
414 PF07163 Pex26: Pex26 protein; 75.8 42 0.00091 27.4 14.2 142 15-166 34-182 (309)
415 KOG0276 Vesicle coat complex C 75.3 19 0.00042 32.6 7.7 50 195-257 646-695 (794)
416 KOG3807 Predicted membrane pro 74.9 49 0.0011 27.7 13.2 120 110-245 194-328 (556)
417 COG3914 Spy Predicted O-linked 74.9 25 0.00055 31.8 8.3 117 263-391 61-178 (620)
418 KOG4014 Uncharacterized conser 74.0 36 0.00077 25.7 14.0 160 71-264 40-240 (248)
419 PF10373 EST1_DNA_bind: Est1 D 73.7 48 0.001 27.1 11.7 62 205-282 1-62 (278)
420 PF04212 MIT: MIT (microtubule 73.5 18 0.00039 22.0 7.2 30 145-174 8-37 (69)
421 cd02681 MIT_calpain7_1 MIT: do 73.5 20 0.00043 22.5 8.2 33 16-48 6-38 (76)
422 PF09311 Rab5-bind: Rabaptin-l 72.8 13 0.00028 28.1 5.6 48 264-311 134-181 (181)
423 KOG2758 Translation initiation 72.0 57 0.0012 27.2 14.9 74 12-89 125-198 (432)
424 PF08311 Mad3_BUB1_I: Mad3/BUB 72.0 31 0.00068 24.2 11.0 86 30-127 40-126 (126)
425 KOG2758 Translation initiation 71.8 58 0.0012 27.2 16.0 75 96-175 125-200 (432)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 71.3 33 0.00071 24.1 11.5 86 200-297 40-126 (126)
427 PF04212 MIT: MIT (microtubule 70.9 21 0.00045 21.7 7.7 34 16-49 5-38 (69)
428 smart00745 MIT Microtubule Int 70.6 23 0.0005 22.1 8.3 28 148-175 14-41 (77)
429 cd02679 MIT_spastin MIT: domai 70.0 25 0.00054 22.2 7.6 32 190-221 12-43 (79)
430 PRK15180 Vi polysaccharide bio 69.7 31 0.00067 30.4 7.5 94 146-257 327-420 (831)
431 PRK15180 Vi polysaccharide bio 69.6 17 0.00036 32.0 6.0 53 239-299 300-352 (831)
432 PF09311 Rab5-bind: Rabaptin-l 69.5 18 0.00039 27.4 5.7 48 306-354 134-181 (181)
433 PF10373 EST1_DNA_bind: Est1 D 69.2 62 0.0013 26.4 13.6 62 77-154 1-62 (278)
434 KOG3807 Predicted membrane pro 68.6 70 0.0015 26.8 17.3 116 69-202 195-327 (556)
435 cd02682 MIT_AAA_Arch MIT: doma 68.6 26 0.00056 21.9 8.0 36 15-50 5-40 (75)
436 PF07163 Pex26: Pex26 protein; 67.5 68 0.0015 26.2 13.6 136 145-294 38-182 (309)
437 PF04097 Nic96: Nup93/Nic96; 66.4 1.2E+02 0.0026 28.6 12.9 18 151-168 514-531 (613)
438 KOG2422 Uncharacterized conser 64.5 1.2E+02 0.0025 27.9 16.6 152 10-172 278-449 (665)
439 smart00101 14_3_3 14-3-3 homol 62.8 79 0.0017 25.4 24.3 183 104-301 5-202 (244)
440 cd02683 MIT_1 MIT: domain cont 62.6 36 0.00078 21.4 8.4 34 16-49 6-39 (77)
441 PF10858 DUF2659: Protein of u 62.4 61 0.0013 24.0 13.8 129 156-298 71-199 (220)
442 PF10938 YfdX: YfdX protein; 62.4 35 0.00076 25.1 5.8 109 63-171 7-146 (155)
443 COG5107 RNA14 Pre-mRNA 3'-end 62.0 1.2E+02 0.0025 27.0 21.9 86 238-338 442-527 (660)
444 PF05053 Menin: Menin; InterP 61.8 1.3E+02 0.0028 27.5 12.9 72 227-301 276-349 (618)
445 PHA02537 M terminase endonucle 61.8 80 0.0017 25.1 9.3 104 151-258 92-208 (230)
446 cd02678 MIT_VPS4 MIT: domain c 60.2 39 0.00085 21.0 7.8 28 148-175 12-39 (75)
447 COG2178 Predicted RNA-binding 59.3 79 0.0017 24.2 12.3 59 190-252 33-93 (204)
448 KOG4521 Nuclear pore complex, 58.6 2.1E+02 0.0046 29.0 20.4 130 60-204 922-1072(1480)
449 KOG2063 Vacuolar assembly/sort 57.9 2E+02 0.0043 28.4 11.6 192 103-298 507-712 (877)
450 KOG2581 26S proteasome regulat 57.8 1.3E+02 0.0028 26.2 22.7 142 25-173 135-278 (493)
451 smart00671 SEL1 Sel1-like repe 57.5 23 0.0005 17.6 3.3 28 17-44 2-33 (36)
452 TIGR02710 CRISPR-associated pr 57.1 1.3E+02 0.0029 26.1 14.1 60 20-82 134-195 (380)
453 KOG0276 Vesicle coat complex C 56.8 47 0.001 30.4 6.5 80 230-342 616-695 (794)
454 cd02678 MIT_VPS4 MIT: domain c 56.6 46 0.001 20.7 8.1 34 16-49 6-39 (75)
455 PF14689 SPOB_a: Sensor_kinase 56.3 41 0.00089 20.0 4.6 34 359-392 27-60 (62)
456 PRK13184 pknD serine/threonine 55.9 2.2E+02 0.0049 28.4 29.2 113 20-144 479-591 (932)
457 cd02656 MIT MIT: domain contai 53.9 51 0.0011 20.4 8.1 28 148-175 12-39 (75)
458 KOG2396 HAT (Half-A-TPR) repea 53.0 1.8E+02 0.0038 26.3 11.5 76 60-148 107-183 (568)
459 KOG1258 mRNA processing protei 52.0 2E+02 0.0042 26.6 31.7 317 28-383 53-394 (577)
460 KOG4279 Serine/threonine prote 51.4 1.1E+02 0.0023 29.2 7.9 105 186-300 201-317 (1226)
461 COG2912 Uncharacterized conser 50.6 1.4E+02 0.003 24.4 9.0 65 228-300 181-245 (269)
462 COG4455 ImpE Protein of avirul 49.9 1.3E+02 0.0028 23.8 8.2 56 236-299 9-64 (273)
463 PF12753 Nro1: Nuclear pore co 47.6 56 0.0012 28.2 5.4 57 288-347 329-389 (404)
464 smart00745 MIT Microtubule Int 47.6 67 0.0015 19.9 8.2 35 16-50 8-42 (77)
465 PF08238 Sel1: Sel1 repeat; I 46.7 40 0.00087 17.1 4.0 28 17-44 2-36 (39)
466 COG3014 Uncharacterized protei 45.9 1.9E+02 0.0041 24.6 14.9 28 190-217 62-89 (449)
467 KOG2709 Uncharacterized conser 45.9 59 0.0013 28.1 5.2 31 314-345 24-54 (560)
468 cd02684 MIT_2 MIT: domain cont 45.4 75 0.0016 19.8 8.0 27 149-175 13-39 (75)
469 KOG2582 COP9 signalosome, subu 45.0 97 0.0021 26.5 6.2 111 57-171 101-212 (422)
470 PF08969 USP8_dimer: USP8 dime 44.1 1E+02 0.0023 21.1 6.4 39 228-268 38-76 (115)
471 cd02656 MIT MIT: domain contai 44.0 77 0.0017 19.6 8.2 33 18-50 8-40 (75)
472 cd02677 MIT_SNX15 MIT: domain 43.9 80 0.0017 19.7 7.9 24 152-175 16-39 (75)
473 PF12753 Nro1: Nuclear pore co 43.8 1E+02 0.0022 26.7 6.3 54 76-132 329-387 (404)
474 cd02680 MIT_calpain7_2 MIT: do 43.1 83 0.0018 19.7 6.1 31 18-48 8-38 (75)
475 PF09205 DUF1955: Domain of un 42.0 1.3E+02 0.0028 21.6 7.1 53 238-298 96-148 (161)
476 PF02064 MAS20: MAS20 protein 41.8 89 0.0019 21.8 4.8 28 145-172 66-93 (121)
477 PF02184 HAT: HAT (Half-A-TPR) 40.1 9.9 0.00021 19.0 0.1 23 370-392 2-24 (32)
478 KOG2396 HAT (Half-A-TPR) repea 40.0 2.9E+02 0.0063 25.1 11.5 72 233-317 110-182 (568)
479 PF08969 USP8_dimer: USP8 dime 39.8 50 0.0011 22.7 3.5 38 271-310 39-76 (115)
480 KOG0546 HSP90 co-chaperone CPR 39.6 75 0.0016 27.0 4.9 103 61-171 225-338 (372)
481 COG4455 ImpE Protein of avirul 38.9 2E+02 0.0043 22.8 7.9 56 108-171 9-64 (273)
482 PF04097 Nic96: Nup93/Nic96; 38.7 3.5E+02 0.0076 25.7 21.1 18 24-41 266-283 (613)
483 PF10938 YfdX: YfdX protein; 37.5 1.7E+02 0.0036 21.6 9.6 109 104-214 6-145 (155)
484 COG5600 Transcription-associat 37.2 2.8E+02 0.006 24.1 8.0 101 197-297 141-247 (413)
485 COG2912 Uncharacterized conser 37.2 2.3E+02 0.0051 23.2 9.9 67 56-130 179-245 (269)
486 PF02064 MAS20: MAS20 protein 36.7 26 0.00056 24.4 1.7 33 358-390 66-98 (121)
487 KOG2709 Uncharacterized conser 36.4 2.1E+02 0.0046 25.0 7.0 32 229-260 23-54 (560)
488 KOG4279 Serine/threonine prote 35.5 4E+02 0.0087 25.7 9.0 122 141-286 200-336 (1226)
489 COG5191 Uncharacterized conser 35.5 2.7E+02 0.0059 23.4 7.5 80 61-153 110-190 (435)
490 KOG2582 COP9 signalosome, subu 35.3 1.4E+02 0.003 25.6 5.7 109 143-257 103-212 (422)
491 KOG3677 RNA polymerase I-assoc 33.6 1.2E+02 0.0025 26.6 5.1 68 61-133 238-305 (525)
492 KOG0128 RNA-binding protein SA 33.6 4.6E+02 0.01 25.6 29.3 146 17-170 114-259 (881)
493 KOG3677 RNA polymerase I-assoc 33.5 3.4E+02 0.0073 24.0 8.3 67 231-302 238-304 (525)
494 PF10366 Vps39_1: Vacuolar sor 33.3 62 0.0014 22.0 3.1 26 19-44 42-67 (108)
495 COG4259 Uncharacterized protei 31.8 1.1E+02 0.0025 20.4 3.8 34 356-389 73-106 (121)
496 TIGR01716 RGG_Cterm transcript 31.6 2.5E+02 0.0055 21.9 9.4 77 183-261 125-201 (220)
497 KOG0546 HSP90 co-chaperone CPR 31.6 1E+02 0.0022 26.2 4.4 102 19-129 225-338 (372)
498 COG3914 Spy Predicted O-linked 30.0 4.6E+02 0.01 24.4 15.1 105 179-300 61-172 (620)
499 COG3014 Uncharacterized protei 29.7 3.6E+02 0.0078 23.1 17.1 27 105-131 63-89 (449)
500 KOG4151 Myosin assembly protei 29.6 2.1E+02 0.0046 27.3 6.5 88 193-292 60-149 (748)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=2.3e-36 Score=253.50 Aligned_cols=339 Identities=22% Similarity=0.278 Sum_probs=308.1
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124 23 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 102 (394)
Q Consensus 23 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 102 (394)
+......-+.+...........+..+..+..+|....+...++..|..+|+|+.|+..+++++++..+..+.+++.+...
T Consensus 164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~ 243 (508)
T KOG1840|consen 164 ADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM 243 (508)
T ss_pred HhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH
Confidence 33333333333555555556666666677888999999999999999999999999999999999999888889999999
Q ss_pred hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 182 (394)
Q Consensus 103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 182 (394)
...+|.+|..++++.+|+..|++|+.+.+..+|+++|.++.++.+||..|...|++++|..++++|+++.++. .+..+
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~ 321 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASH 321 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 67788
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Q 016124 183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 262 (394)
Q Consensus 183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 262 (394)
+.+...+.+++.++...+++++|..++++++++....++.+++.++..+.+||.+|..+|++++|.+++++++.+.++..
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124 263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 342 (394)
Q Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~ 342 (394)
+..++.....+..+|..|.+.+++.+|...|.++..+. ..+|+++|.+..++.+|+.+|..+|+++ +|+++.++++.+
T Consensus 402 ~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e-~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 402 GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYE-AAEELEEKVLNA 479 (508)
T ss_pred cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHH-HHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999 8999999999999999999999999999 999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHH
Q 016124 343 QEREFGSESEEVMLTLKKVVSYL 365 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~ 365 (394)
.+...+..+|.....-..++...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~ 502 (508)
T KOG1840|consen 480 REQRLGTASPTVEDEKLRLADLS 502 (508)
T ss_pred HHHcCCCCCcchhHHHHhhhHHH
Confidence 99988888877666555444443
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=1.9e-36 Score=253.94 Aligned_cols=313 Identities=28% Similarity=0.387 Sum_probs=295.1
Q ss_pred ccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124 5 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 84 (394)
Q Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 84 (394)
.+.++..+|....+...++..|..+|+|++|+..+++++++..+..+..++.+...+..+|.+|..++++.+|+.+|++|
T Consensus 188 ~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 188 AKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred HHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHH
Q 016124 85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 164 (394)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 164 (394)
+.+.+...|.++|.++.++.+||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++..++++++|..+
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccH
Q 016124 165 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 244 (394)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 244 (394)
+++++++.... ++++++.+..++.++|.+|..+|++++|.+++++++.+.++..+..++.+...+.++|..|.+.+++
T Consensus 348 ~q~al~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~ 425 (508)
T KOG1840|consen 348 LQKALKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY 425 (508)
T ss_pred HHHHHHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence 99999999865 7888889999999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 016124 245 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS 320 (394)
Q Consensus 245 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 320 (394)
.+|...|.++..+. +..|+++|.+...+.+|+.+|..+|+++.|+++.+.++...+...+..++.....-..++.
T Consensus 426 ~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 426 EEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred chHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 99999999999999 8899999999999999999999999999999999999999999988888776554444433
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-39 Score=263.66 Aligned_cols=321 Identities=17% Similarity=0.228 Sum_probs=253.8
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHh-------------C-------------CchHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-------------G-------------KTSILLVTSLLGM 64 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~-------------~~~~~~~~~~~~l 64 (394)
..|+..+++.++|.++...|+.+.|...|.+++++..... | ...|..+.+|.++
T Consensus 145 l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnL 224 (966)
T KOG4626|consen 145 LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNL 224 (966)
T ss_pred cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhc
Confidence 4566666677777777777777777777766666521100 0 0013344456667
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124 65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144 (394)
Q Consensus 65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 144 (394)
|.++..+|+...|+..|++|+.+ +|....+|.+||.+|...+.|++|+.+|.+|+.+ .|..+.+
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a 288 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVA 288 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhh
Confidence 77777777777777777777665 5777788888888888888888888888888765 5666778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 224 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 224 (394)
+.++|.+|..+|..+-|+..|++++++. |. ...++.|+|..+...|+..+|..+|.+++.+ .
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~-------P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~ 350 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQ-------PN---FPDAYNNLANALKDKGSVTEAVDCYNKALRL--------C 350 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcC-------CC---chHHHhHHHHHHHhccchHHHHHHHHHHHHh--------C
Confidence 8888888888888888888888888742 22 2456789999999999999999999999886 3
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124 225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 304 (394)
Q Consensus 225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 304 (394)
|..+.++++||.+|..+|.+++|..+|.++++. .|..+.+..+||.+|.++|++++|+.+|++++++.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~---- 418 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK---- 418 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC----
Confidence 566778899999999999999999999999884 46778888999999999999999999999998865
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124 305 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 384 (394)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 384 (394)
|..+.++.++|..|..+|+.. .|+.+|.+|+.+ +|..++++.+||.+|...|+..+|+..|++++.+
T Consensus 419 ----P~fAda~~NmGnt~ke~g~v~-~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 419 ----PTFADALSNMGNTYKEMGDVS-AAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred ----chHHHHHHhcchHHHHhhhHH-HHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 788889999999999999998 999999999875 6888999999999999999999999999999998
Q ss_pred HHHHHH
Q 016124 385 RMKYKQ 390 (394)
Q Consensus 385 ~~~~~~ 390 (394)
++++.+
T Consensus 486 kPDfpd 491 (966)
T KOG4626|consen 486 KPDFPD 491 (966)
T ss_pred CCCCch
Confidence 877654
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=256.47 Aligned_cols=321 Identities=18% Similarity=0.191 Sum_probs=237.4
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
..|..+++|.++|+++...|++++|+..|+.++++ .|..++++.++|.++...|+.+.|...|..++++...
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--------~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 46778899999999999999999999999999986 3667788888888888888888888888887776210
Q ss_pred hc-------------C-------------CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124 91 NR-------------G-------------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144 (394)
Q Consensus 91 ~~-------------~-------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 144 (394)
.. | ...|..+.+|.+||.++..+|+...|+.+|++|+.+ +|....+
T Consensus 183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dA 254 (966)
T KOG4626|consen 183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDA 254 (966)
T ss_pred hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHH
Confidence 00 0 012334444555555555555555555555555544 4566667
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 224 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 224 (394)
|.+||.+|...+.|++|+..|.+|+.+. | ..+.++.|+|.+|..+|..+-|+..|++++++ .
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lr-------p---n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~ 316 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLR-------P---NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------Q 316 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcC-------C---cchhhccceEEEEeccccHHHHHHHHHHHHhc--------C
Confidence 7777777777777777777777776632 2 22455677777777777777777777777764 5
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124 225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 304 (394)
Q Consensus 225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 304 (394)
|....++.+||..+...|+..+|..+|.+++.+ .|..+.+..+||.++..+|.+++|..+|+++++..
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---- 384 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---- 384 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC----
Confidence 667778888888888888888888888888874 35556677888888888888888888888888765
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124 305 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 384 (394)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 384 (394)
|..+.+..+||.+|.++|+.+ +|+.+|+.++.+ .|..++++.++|..|..+|+...|+..|.+++.+
T Consensus 385 ----p~~aaa~nNLa~i~kqqgnl~-~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 385 ----PEFAAAHNNLASIYKQQGNLD-DAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred ----hhhhhhhhhHHHHHHhcccHH-HHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 667777888888888888888 888888888865 4677888888888888888888888888888887
Q ss_pred HHHHHH
Q 016124 385 RMKYKQ 390 (394)
Q Consensus 385 ~~~~~~ 390 (394)
.+.+.+
T Consensus 452 nPt~Ae 457 (966)
T KOG4626|consen 452 NPTFAE 457 (966)
T ss_pred CcHHHH
Confidence 776654
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-29 Score=228.48 Aligned_cols=324 Identities=15% Similarity=0.154 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 94 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 94 (394)
.+..+..+|..++..|+|++|+..|++++.+. ++ ...+.++|.+|...|++++|+..+++++++
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-----p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------- 189 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-----PD----PVYYSNRAACHNALGDWEKVVEDTTAALEL------- 189 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----Cc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence 45667899999999999999999999999863 22 246889999999999999999999999986
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHH-----------------------------------------------
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL----------------------------------------------- 127 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------------------------- 127 (394)
.|....++..+|.+|..+|++++|+..+..+.
T Consensus 190 -~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 190 -DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 56678889999999999999999976554332
Q ss_pred ----------------------------------------------HHHHHhhC--CCchHHHHHHHHHHHHHHHCCCHH
Q 016124 128 ----------------------------------------------KIYTKVYG--ENDGRVGMAMCSLAHAKCANGNAE 159 (394)
Q Consensus 128 ----------------------------------------------~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~ 159 (394)
..++.... ...|....++..+|.++..+|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 11111111 113455567888899999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124 160 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 239 (394)
Q Consensus 160 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 239 (394)
+|+..+++++++. |. ....+..+|.++...|++++|+..++++++. +|....++..+|.++.
T Consensus 349 eA~~~~~kal~l~-------P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 349 EALADLSKSIELD-------PR---VTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHcC-------CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence 9999999998753 22 2345678888888888888888888888764 3455667888888888
Q ss_pred HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124 240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 319 (394)
Q Consensus 240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 319 (394)
..|++++|+..|++++.+ .|.....+..+|.++...|++++|+..+++++... |.....+..+|
T Consensus 411 ~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg 474 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYG 474 (615)
T ss_pred HcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHH
Confidence 888888888888888773 45556667778888888888888888888777643 33344567777
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhhc--------------------C-------------CCCHHHHHHHHHHHHHHH
Q 016124 320 SIQTRLGEDDTKLLELLKRVLRIQEREF--------------------G-------------SESEEVMLTLKKVVSYLD 366 (394)
Q Consensus 320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~--------------------~-------------~~~~~~~~~~~~la~~~~ 366 (394)
.++...|+++ +|+..|++++.+..... + ..+|+...++..+|.++.
T Consensus 475 ~~~~~~g~~~-~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 475 ELLLDQNKFD-EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL 553 (615)
T ss_pred HHHHHccCHH-HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 7777777777 77777777665422100 0 012344456788999999
Q ss_pred HhcCchhhhhhHHHHHHHHHHHHH
Q 016124 367 KLGRKEEKFPLKKRLSNLRMKYKQ 390 (394)
Q Consensus 367 ~~g~~~~A~~~~~~a~~~~~~~~~ 390 (394)
..|++++|+.+|++++++.+..++
T Consensus 554 ~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 554 QQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HccCHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999998876544
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=4.3e-27 Score=211.23 Aligned_cols=313 Identities=12% Similarity=0.009 Sum_probs=253.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124 9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 88 (394)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 88 (394)
....|....++..+|......|++++|+..+++++... |....++..+|.++...|++++|+..+++++.+
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l- 139 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA- 139 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34566667788899999999999999999999998862 444567889999999999999999999999986
Q ss_pred HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124 89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 168 (394)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 168 (394)
.|....++..++.++...|++++|+..+.+++.. .++++. .+..++ .+...|++++|+..++++
T Consensus 140 -------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----~P~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 140 -------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----VPPRGD---MIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred -------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCCHH---HHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 4566778889999999999999999999977665 223332 333333 478899999999999988
Q ss_pred HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHH--
Q 016124 169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-- 246 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-- 246 (394)
+.... .+.. .....++.++...|++++|+..+++++.. +|....++.++|.++...|++++
T Consensus 204 l~~~~------~~~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 204 LPFFA------LERQ---ESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HhcCC------Ccch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhH
Confidence 76421 1111 12245678899999999999999999874 45667888999999999999986
Q ss_pred --HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 016124 247 --AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 324 (394)
Q Consensus 247 --A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (394)
|+..+++++.+ .|....++..+|.++...|++++|+..+++++... |....++..+|.++..
T Consensus 267 ~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 267 LQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Confidence 78999998873 46677899999999999999999999999998753 3444567889999999
Q ss_pred hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124 325 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 325 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
.|+++ +|+..|++++.. +|........+|.++...|++++|+..|+++++..++.
T Consensus 331 ~G~~~-eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 331 VGQYT-AASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCCHH-HHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 99999 999999998864 23334456667889999999999999999999987663
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=2.5e-26 Score=207.10 Aligned_cols=281 Identities=12% Similarity=-0.018 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124 57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 136 (394)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 136 (394)
.+..+...|..++..|+|++|+..|++++.+. |+ ...+.++|.+|..+|++++|+..+.+++++
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------- 189 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PD-PVYYSNRAACHNALGDWEKVVEDTTAALEL------- 189 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence 45567889999999999999999999999762 22 457899999999999999999999999986
Q ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------------------------------------
Q 016124 137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI-------------------------------------------- 172 (394)
Q Consensus 137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------------------------------------------- 172 (394)
+|....++..+|.+|..+|++++|+..+..+..+.
T Consensus 190 -~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 190 -DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 45566789999999999999999987654432110
Q ss_pred -------------------------------------------------HhcccCCCchHHHHHHHHHHHHHHHHcCChH
Q 016124 173 -------------------------------------------------KDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 203 (394)
Q Consensus 173 -------------------------------------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 203 (394)
......+...+....++..+|.++...|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 0000000012333456677888888899999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh
Q 016124 204 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 283 (394)
Q Consensus 204 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 283 (394)
+|+..+++++.+ +|....++..+|.++...|++++|+..+++++++ .|....++..+|.++...
T Consensus 349 eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 349 EALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Confidence 999999988874 4666778889999999999999999999998873 355667888999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 016124 284 NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 363 (394)
Q Consensus 284 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 363 (394)
|++++|+..|++++.+. |.....+..+|.++...|+++ +|+..+++++.. .|....++..+|.
T Consensus 413 g~~~~A~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~-eA~~~~~~al~~--------~P~~~~~~~~lg~ 475 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLD--------PDFIFSHIQLGVTQYKEGSIA-SSMATFRRCKKN--------FPEAPDVYNYYGE 475 (615)
T ss_pred CCHHHHHHHHHHHHHcC--------ccCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHh--------CCCChHHHHHHHH
Confidence 99999999999998753 444566888999999999999 999999999874 2444567888999
Q ss_pred HHHHhcCchhhhhhHHHHHHHHHH
Q 016124 364 YLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 364 ~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
++...|++++|+..|++++.+.++
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCc
Confidence 999999999999999999988654
No 8
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-25 Score=175.73 Aligned_cols=332 Identities=16% Similarity=0.106 Sum_probs=270.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
..-|.-+++.|++...+.+|+.|++.-.. +-.....+|..+|+.|+..++|.+|+++...-+.+.+.+. +...-
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGE 94 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGE 94 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhcc
Confidence 34577789999999999999999987422 2345667789999999999999999999888777766654 34445
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC--------------------HH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN--------------------AE 159 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~ 159 (394)
+.+..+||.++...|.|++|+.+..+-+.+.+... +......+++++|.+|...|+ ++
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 67788999999999999999999999999988763 455677899999999998775 34
Q ss_pred HHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124 160 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 239 (394)
Q Consensus 160 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 239 (394)
.|.++|..-+++.++. .+......++.++|..|+.+|+|+.|+...+.-+.+.++.. +....-.++.++|.++.
T Consensus 173 ~Av~fy~eNL~l~~~l----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKL----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHh----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhh
Confidence 5666777767666653 45556678889999999999999999999999999988765 33445568889999999
Q ss_pred HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124 240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 319 (394)
Q Consensus 240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 319 (394)
-.|+++.|+++|+..+.+..+. .+....+...+.||..|.-..++.+|+.++.+-+.+.++. .+......+++.||
T Consensus 247 flg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLg 322 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLG 322 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHH
Confidence 9999999999999999988776 3445567778899999999999999999999999999887 45555678899999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCch
Q 016124 320 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE 372 (394)
Q Consensus 320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 372 (394)
..+...|..+ +|+.+.++.+++..++..+. ....+..+|...-...|..+
T Consensus 323 na~~alg~h~-kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 323 NAFNALGEHR-KALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHhhhhHH-HHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCc
Confidence 9999999999 99999999999888764332 23455666777666666644
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.4e-25 Score=212.59 Aligned_cols=309 Identities=18% Similarity=0.141 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124 13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 92 (394)
Q Consensus 13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 92 (394)
|.....+..++..+...|++++|+..+++++... |.....+..+|.++...|++++|+..|+++++.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 630 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL----- 630 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 3444556677777777777777777777766531 222345667777777777777777777777654
Q ss_pred CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
.|....++..+|.++...|++++|...+++++.. .|....++..++.++...|++++|..+++.+.+..
T Consensus 631 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 631 ---QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2334456667777777777777777777777654 12222334444455555555555555544443321
Q ss_pred HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh--------------------------hCCCCcc
Q 016124 173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY--------------------------KGKEHPS 226 (394)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--------------------------~~~~~~~ 226 (394)
+..+ ..+..+|.++...|++++|+..+++++...... . ...|.
T Consensus 700 -------~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~ 768 (899)
T TIGR02917 700 -------PKAA---LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPN 768 (899)
T ss_pred -------cCCh---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCC
Confidence 1111 122334444444444444444444444321000 0 01223
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124 227 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 306 (394)
Q Consensus 227 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 306 (394)
...++..+|.++...|++++|+..|+++++. .|....++..++.++...|+ .+|+.++++++... +
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-----~ 834 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-----P 834 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-----C
Confidence 3344555555555555555555555555442 23334444555555555555 44555555554432 2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124 307 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 382 (394)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 382 (394)
+++ ..+..+|.++...|+++ +|+.+++++++.. |....++..++.++...|++++|..++++++
T Consensus 835 ~~~---~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 835 NIP---AILDTLGWLLVEKGEAD-RALPLLRKAVNIA--------PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCc---HHHHHHHHHHHHcCCHH-HHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 222 23445555555555555 5555555555421 1123445555555555566665555555543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.2e-25 Score=212.43 Aligned_cols=326 Identities=13% Similarity=0.095 Sum_probs=234.6
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI------LLVTSLLGMAKVLGSIGRAKKAVEIYHRV 84 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 84 (394)
.+|....++..+|.++...|++++|+.+|+++++........... ........+|.++...|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566788999999999999999999999999864221000000 01123345688899999999999999999
Q ss_pred HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHH-----------------------
Q 016124 85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV----------------------- 141 (394)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----------------------- 141 (394)
+.. .|....++..+|.++...|++++|+..|++++++.. +++..
T Consensus 378 l~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-----~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 378 RQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-----GNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 987 455567888999999999999999999999987621 11110
Q ss_pred ----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHH
Q 016124 142 ----------------GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG 205 (394)
Q Consensus 142 ----------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 205 (394)
...+..+|.++...|++++|+..|++++++. |+.+ .++..+|.+|...|++++|
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~---~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSV---WLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCH---HHHHHHHHHHHHcCCHHHH
Confidence 1123456777888999999999999999853 3433 3458899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---------------------H------
Q 016124 206 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI---------------------M------ 258 (394)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------------------~------ 258 (394)
+..+++++.. .|.....+..++..+...+++++|+..++++... .
T Consensus 515 ~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 515 DALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999998864 3344445556666666667777776665542100 0
Q ss_pred ------HhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHH
Q 016124 259 ------TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL 332 (394)
Q Consensus 259 ------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A 332 (394)
...+ ..+|.....+..+|.++...|++++|+..|++++... |....++..++.++...|+++ +|
T Consensus 587 G~~~eA~~~l-~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~-eA 656 (1157)
T PRK11447 587 GKEAEAEALL-RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLA-AA 656 (1157)
T ss_pred CCHHHHHHHH-HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHH-HH
Confidence 0000 0234555677889999999999999999999988753 334457788888888888888 88
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124 333 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 385 (394)
Q Consensus 333 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 385 (394)
+..++++++. .|+...++..+|.++...|++++|..+|++++...
T Consensus 657 ~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 657 RAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888876642 23334556667778888888888888888877653
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=9.1e-25 Score=196.32 Aligned_cols=302 Identities=10% Similarity=0.023 Sum_probs=246.7
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 98 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 98 (394)
+...+......|++++|...++..+.. .|....++..+|.+....|++++|+..+++++.. +|.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~ 108 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVC 108 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCC
Confidence 345566778899999999999998875 3445667888999999999999999999999987 566
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
...++..+|.++...|++++|+..+++++.+ .|....++..++.++...|++++|+..+.+++...
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~------ 174 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV------ 174 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC------
Confidence 6788999999999999999999999999986 34455678889999999999999999999877642
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 258 (394)
++++.. +..+ ..+...|++++|+..+++++... .+........++.++...|++++|+..+++++..
T Consensus 175 -P~~~~a---~~~~-~~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~- 241 (656)
T PRK15174 175 -PPRGDM---IATC-LSFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR- 241 (656)
T ss_pred -CCCHHH---HHHH-HHHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 333332 2233 34788999999999999876541 1122233456788899999999999999999873
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHhhcChHH----HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124 259 TKTVGPDDQSISFPMLHLGITLYHLNRDKE----AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 334 (394)
Q Consensus 259 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~ 334 (394)
+|....++..+|.++...|++++ |+..+++++... |....++..+|.++...|+++ +|+.
T Consensus 242 -------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~-eA~~ 305 (656)
T PRK15174 242 -------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNE-KAIP 305 (656)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHH-HHHH
Confidence 46667888999999999999986 788999888754 455678899999999999999 9999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124 335 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 335 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
.+++++.. +|+...++..+|.++...|++++|+..|++++...+.
T Consensus 306 ~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 306 LLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99999975 2344567788999999999999999999999876554
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=4.8e-24 Score=183.22 Aligned_cols=308 Identities=17% Similarity=0.161 Sum_probs=239.9
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 98 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 98 (394)
.+..|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++.. .......
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~ 105 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR----PDLTREQ 105 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC----CCCCHHH
Confidence 456788899999999999999999985 2445677889999999999999999999988753 1111122
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
...++..+|.+|...|++++|+..|.++++. .+....++..++.++...|++++|+..++++++...
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----- 172 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG----- 172 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----
Confidence 3467889999999999999999999998864 344456788999999999999999999999887532
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 258 (394)
.+........+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++..
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 243 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ- 243 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 1222234455678999999999999999999999875 2445567889999999999999999999999873
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124 259 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 338 (394)
Q Consensus 259 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 338 (394)
+......++..++.+|...|++++|...+++++... |+. ..+..++.++...|+++ +|+..+++
T Consensus 244 ------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~-~A~~~l~~ 307 (389)
T PRK11788 244 ------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPE-AAQALLRE 307 (389)
T ss_pred ------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence 112234567889999999999999999999987752 332 23478999999999999 99999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHH--HhcCchhhhhhHHHHHHH
Q 016124 339 VLRIQEREFGSESEEVMLTLKKVVSYLD--KLGRKEEKFPLKKRLSNL 384 (394)
Q Consensus 339 al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~ 384 (394)
+++. .|+.......++..+. ..|+..+|+..+++.+..
T Consensus 308 ~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 308 QLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9875 2333333323333322 256899999999988753
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.5e-24 Score=205.31 Aligned_cols=318 Identities=16% Similarity=0.125 Sum_probs=240.4
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch-
Q 016124 21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL- 99 (394)
Q Consensus 21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~- 99 (394)
.+|..+...|++++|+..|++++... |....++..+|.++...|++++|+.+|+++++.. ++.+..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~ 340 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRD 340 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchh
Confidence 45888999999999999999999862 3345678999999999999999999999999863 222211
Q ss_pred ----------HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124 100 ----------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 169 (394)
Q Consensus 100 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 169 (394)
......+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 123345688899999999999999999987 33445678899999999999999999999999
Q ss_pred HHHHhccc---------CCCc-----------------------hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124 170 RVIKDSNY---------MSLD-----------------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 217 (394)
Q Consensus 170 ~~~~~~~~---------~~~~-----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 217 (394)
++...... .... .......+..+|.++...|++++|+..++++++.
T Consensus 413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-- 490 (1157)
T PRK11447 413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-- 490 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 86422100 0000 0000122345677888899999999999999875
Q ss_pred HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124 218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 297 (394)
Q Consensus 218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 297 (394)
.|....++..+|.++...|++++|+..+++++.. .|.....++.++..+...|++++|+..++++.
T Consensus 491 ------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 491 ------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 4566678899999999999999999999998873 34455566677777777788877777765431
Q ss_pred HH---------------------H------------HHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 016124 298 YI---------------------R------------EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 344 (394)
Q Consensus 298 ~~---------------------~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~ 344 (394)
.. . ...+. .+|.....+..+|.++...|+++ +|+..|+++++.
T Consensus 557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~-~A~~~y~~al~~-- 632 (1157)
T PRK11447 557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYA-AARAAYQRVLTR-- 632 (1157)
T ss_pred chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--
Confidence 10 0 00000 12333456788999999999999 999999999974
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124 345 REFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 385 (394)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 385 (394)
.|+...++..++.++...|++++|+..+++++...
T Consensus 633 ------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 633 ------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 34456788999999999999999999999887653
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.1e-24 Score=208.03 Aligned_cols=316 Identities=19% Similarity=0.197 Sum_probs=234.8
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
..|....++..++.++...|++++|+.++++++... |.....+..++..+...|++++|+..+++++..
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 596 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKALAILNEAADA--- 596 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc---
Confidence 345566778899999999999999999999998752 333456778999999999999999999998764
Q ss_pred hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
.|.....+..+|.++...|++++|+..|+++++. .|....++..++.++...|++++|...++++++
T Consensus 597 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 597 -----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445678899999999999999999999999875 233345778899999999999999999999998
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 250 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 250 (394)
.. |+. ..++..++.++...|++++|+.+++..... .|.....+..+|.++...|++++|+..
T Consensus 664 ~~-------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 664 LK-------PDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 53 232 235578999999999999999999887653 233445566677777777777777777
Q ss_pred HHHHHHHHH--------------------------hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124 251 LRICLDIMT--------------------------KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 304 (394)
Q Consensus 251 ~~~a~~~~~--------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 304 (394)
|++++.... +.. ...|....++..+|.++...|++++|+..|+++++..
T Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---- 800 (899)
T TIGR02917 726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA---- 800 (899)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----
Confidence 777665310 000 0134445556666666666666666666666666532
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124 305 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 384 (394)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 384 (394)
|....++..++.++...|+ . +|+.++++++++ .+++ ..++..+|.++...|++++|..+|++++++
T Consensus 801 ----p~~~~~~~~l~~~~~~~~~-~-~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 801 ----PDNAVVLNNLAWLYLELKD-P-RALEYAEKALKL-----APNI---PAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred ----CCCHHHHHHHHHHHHhcCc-H-HHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2334456667777777776 5 677777777654 1233 345667888899999999999999999887
Q ss_pred HHH
Q 016124 385 RMK 387 (394)
Q Consensus 385 ~~~ 387 (394)
.+.
T Consensus 867 ~~~ 869 (899)
T TIGR02917 867 APE 869 (899)
T ss_pred CCC
Confidence 553
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.9e-23 Score=165.89 Aligned_cols=330 Identities=16% Similarity=0.145 Sum_probs=216.0
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124 13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 92 (394)
Q Consensus 13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 92 (394)
...+..+-+.|+-++..|+|++|+.+|.+|++++. +. ...|.+++.+|...|+|++.++...+++++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p-----~e---piFYsNraAcY~~lgd~~~Vied~TkALEl----- 178 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP-----DE---PIFYSNRAACYESLGDWEKVIEDCTKALEL----- 178 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC-----CC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhc-----
Confidence 34567788999999999999999999999999852 22 445889999999999999999999999997
Q ss_pred CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHH------------------HHHHH-----HHHhhCC-------------
Q 016124 93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFS------------------RILKI-----YTKVYGE------------- 136 (394)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~------------- 136 (394)
+|....+++..+..+..+|++++|+.-.. +.+.. ....+..
T Consensus 179 ---~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 179 ---NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred ---CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 78889999999999999999998875432 11110 0000000
Q ss_pred ---------------------------------------------------------------C--chHHHHHHHHHHHH
Q 016124 137 ---------------------------------------------------------------N--DGRVGMAMCSLAHA 151 (394)
Q Consensus 137 ---------------------------------------------------------------~--~~~~~~~~~~la~~ 151 (394)
+ -...+.++...|..
T Consensus 256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0 00123345555666
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124 152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 231 (394)
Q Consensus 152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (394)
++-.|++-.|...+++++.+.... ...|..+|.+|....+.++-...|++|..+ +|....+|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvY 397 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF----------NSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVY 397 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc----------chHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchh
Confidence 667777777777777777754321 111455566666666666666666666553 34444456
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH
Q 016124 232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 311 (394)
Q Consensus 232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 311 (394)
+..|.++.-.+++++|+.-|++++.+ .|..+..+..++.+..++++++++...|+++...+ |..
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~ 461 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNC 461 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCC
Confidence 66666666666666666666666553 34444455555555555555555555555555433 233
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC---------------------------------CCCHHHHHHH
Q 016124 312 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG---------------------------------SESEEVMLTL 358 (394)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~---------------------------------~~~~~~~~~~ 358 (394)
..++...|.++..+++++ +|++.|.+++++-....+ .-+|..-.++
T Consensus 462 ~Evy~~fAeiLtDqqqFd-~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 462 PEVYNLFAEILTDQQQFD-KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred chHHHHHHHHHhhHHhHH-HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHH
Confidence 334445555555555555 555555555443322000 1245556778
Q ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHhhc
Q 016124 359 KKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ 393 (394)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 393 (394)
..||.+..++|+.++|+++|+++..+.+...+++|
T Consensus 541 ~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 541 ETLAQFELQRGKIDEAIELFEKSAQLARTESEMVH 575 (606)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88999999999999999999999999998888765
No 16
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.93 E-value=4.1e-24 Score=168.73 Aligned_cols=306 Identities=14% Similarity=0.109 Sum_probs=251.4
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124 65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144 (394)
Q Consensus 65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 144 (394)
|.-+++.|++...+.+|+.|++.-. .+-.....+|..||..|+.+++|++|+++-..-+.+.+.+. +....+.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEAKs 97 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEAKS 97 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccccc
Confidence 6778899999999999999998732 23445667899999999999999999999887776655542 33445667
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC--------------------hHH
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR--------------------GQE 204 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~ 204 (394)
..++|.++-..|.|++|+.+..+-+.+.++. .+...-..+++++|.+|...|+ ++.
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areL----gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFAREL----GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHH----hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 7899999999999999999999999998875 4556667889999999998875 345
Q ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc
Q 016124 205 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 284 (394)
Q Consensus 205 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 284 (394)
|.++|.+-+++.++.. +......++-+||..|...|+|+.|+...+.-+.+.++. .+.....+++.++|.++.-.|
T Consensus 174 Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhhc
Confidence 6666666666665544 333456688899999999999999999999999887776 344455678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 016124 285 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY 364 (394)
Q Consensus 285 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 364 (394)
+++.|+++|+..+.+..++ .+....+...+.||..|.-..+++ +|+.++++-+.|.+++- +......++..||..
T Consensus 250 ~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~-kAI~Yh~rHLaIAqeL~--DriGe~RacwSLgna 324 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQ-KAITYHQRHLAIAQELE--DRIGELRACWSLGNA 324 (639)
T ss_pred ccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHH
Confidence 9999999999999988876 444556788899999999999999 99999999999998862 334557788999999
Q ss_pred HHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 365 LDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 365 ~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
+...|..++|+.+.++.+.+..+..
T Consensus 325 ~~alg~h~kAl~fae~hl~~s~ev~ 349 (639)
T KOG1130|consen 325 FNALGEHRKALYFAELHLRSSLEVN 349 (639)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988877654
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-23 Score=175.56 Aligned_cols=308 Identities=16% Similarity=0.146 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 14 LLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 14 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
.....+..+|..|.... +..+|+..|.+ + ...++....++..+|..|+.+++|++|..+|+.+...
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~---- 382 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI---- 382 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 45566777777766544 34566666665 2 2234556688999999999999999999999988765
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHH-HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVF-SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
.|....-.-....+++++.+-- ++.++ +..++ .++....+|..+|.+|..+++++.|+++|++|++
T Consensus 383 ----~p~rv~~meiyST~LWHLq~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ 449 (638)
T KOG1126|consen 383 ----EPYRVKGMEIYSTTLWHLQDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ 449 (638)
T ss_pred ----ccccccchhHHHHHHHHHHhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc
Confidence 2333333333344444444322 22222 22222 2444556777888888888888888888888877
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 250 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 250 (394)
+.+ ..+.+|..+|.-+.....+|+|..+|+.|+.+ +|..-.+|+.+|.+|.++++++.|+-+
T Consensus 450 ldp----------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 450 LDP----------RFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred cCC----------ccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHH
Confidence 532 12445566777777777888888888888764 455567788888888888888888888
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCch
Q 016124 251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 330 (394)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 330 (394)
|++|+++ .|........+|.++.+.|+.++|+.++++|+.+. +.+ .-..+..+.++...++++
T Consensus 512 fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn---~l~~~~~~~il~~~~~~~- 574 (638)
T KOG1126|consen 512 FQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKN---PLCKYHRASILFSLGRYV- 574 (638)
T ss_pred HHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCC---chhHHHHHHHHHhhcchH-
Confidence 8888774 46666667778888888888888888888887643 222 234667778888888888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 331 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 331 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
+|+..+++..++ .|+...++..+|.+|.+.|+.+.|+..|--|.++.++-.
T Consensus 575 eal~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 575 EALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 887777776554 356677778888888888888888888887777766543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3e-22 Score=172.11 Aligned_cols=279 Identities=16% Similarity=0.109 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124 60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 139 (394)
Q Consensus 60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 139 (394)
..+..|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++... .....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence 4556688889999999999999999885 45567788999999999999999999999887631 11122
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
....++..+|.+|...|++++|+..|+++++. .+. ...++..++.++...|++++|+..+++++.....
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-------~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 173 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE-------GDF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD- 173 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------Ccc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-
Confidence 34467889999999999999999999998863 122 2345688999999999999999999998764210
Q ss_pred hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
+........+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++..
T Consensus 174 --~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 174 --SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred --cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 111123445678999999999999999999999874 3455678889999999999999999999999864
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHH
Q 016124 300 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK 379 (394)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 379 (394)
. + .....++..++.++...|+++ +|...++++++.. ++. .....++.++...|++++|...++
T Consensus 244 ~-----p--~~~~~~~~~l~~~~~~~g~~~-~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 244 D-----P--EYLSEVLPKLMECYQALGDEA-EGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred C-----h--hhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2 1 223456778999999999999 9999999988752 222 233788999999999999999999
Q ss_pred HHHHHHHHH
Q 016124 380 RLSNLRMKY 388 (394)
Q Consensus 380 ~a~~~~~~~ 388 (394)
+++...++.
T Consensus 307 ~~l~~~P~~ 315 (389)
T PRK11788 307 EQLRRHPSL 315 (389)
T ss_pred HHHHhCcCH
Confidence 999876654
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-23 Score=175.70 Aligned_cols=277 Identities=19% Similarity=0.173 Sum_probs=224.4
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124 7 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 86 (394)
Q Consensus 7 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 86 (394)
.+...+++...++..+|..|+.+++|++|..+|+.+-+.. |..+.-.-....+++...+-- ++.++-+-+
T Consensus 344 klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~--------p~rv~~meiyST~LWHLq~~v-~Ls~Laq~L- 413 (638)
T KOG1126|consen 344 KLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE--------PYRVKGMEIYSTTLWHLQDEV-ALSYLAQDL- 413 (638)
T ss_pred hhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cccccchhHHHHHHHHHHhhH-HHHHHHHHH-
Confidence 3566677778889999999999999999999999887652 333333333334444433322 222222211
Q ss_pred HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016124 87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 166 (394)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 166 (394)
-..++..+.+|..+|.||..+++++.|+++|++|+++ +|..+.++..+|.-+.....+|.|..+|+
T Consensus 414 ------i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 414 ------IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred ------HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 1236677889999999999999999999999999987 67778899999999999999999999999
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHH
Q 016124 167 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE 246 (394)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 246 (394)
.|+.+..+ -..+|+.+|.+|.++++++.|+-+|++|+++ +|........+|.++.+.|+.++
T Consensus 480 ~Al~~~~r----------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 480 KALGVDPR----------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhhcCCch----------hhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhH
Confidence 99985322 2567899999999999999999999999986 57777788899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 016124 247 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG 326 (394)
Q Consensus 247 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 326 (394)
|+.++++|+.+ +|...-+.+..|.++...+++++|+..+++..++. |+...++..+|.+|.+.|
T Consensus 542 AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 542 ALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLG 605 (638)
T ss_pred HHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHc
Confidence 99999999884 45556677889999999999999999999887755 667778999999999999
Q ss_pred CCchHHHHHHHHHHHH
Q 016124 327 EDDTKLLELLKRVLRI 342 (394)
Q Consensus 327 ~~~~~A~~~~~~al~~ 342 (394)
+.+ .|+..|.=|.++
T Consensus 606 ~~~-~Al~~f~~A~~l 620 (638)
T KOG1126|consen 606 NTD-LALLHFSWALDL 620 (638)
T ss_pred cch-HHHHhhHHHhcC
Confidence 999 999888877764
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.3e-21 Score=170.10 Aligned_cols=339 Identities=18% Similarity=0.157 Sum_probs=234.6
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124 8 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 87 (394)
Q Consensus 8 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 87 (394)
+...+|...-.+...|.+.+..|+|..|+.+|++++.+.+.. .+.....+|.|+..+|+.+.|+..|++++++
T Consensus 156 Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~-------~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 156 VLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC-------KADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred HHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc-------CCCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 344566666777888899999999999999999998875432 1223445677888888888888888888775
Q ss_pred HHHhc-----------------------------CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124 88 LELNR-----------------------------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138 (394)
Q Consensus 88 ~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 138 (394)
-.... -...+..+.+++.|+.-++..|+|..+..+...++... ...
T Consensus 229 dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~ 303 (1018)
T KOG2002|consen 229 DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENK 303 (1018)
T ss_pred ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhh
Confidence 21110 01123344556666666677777777776666666542 123
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 218 (394)
Q Consensus 139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 218 (394)
+..+..++.+|.+|..+|+|++|..+|.+++... ++. ..-.+..+|.+|...|+++.|..+|++.+..
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-------~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--- 371 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-------NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--- 371 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-------CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHh---
Confidence 4555667777777777777777777777776632 222 1223466777777777777777777776653
Q ss_pred hhCCCCccHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124 219 YKGKEHPSFVTHLLNLAASYSRSK----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 294 (394)
Q Consensus 219 ~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (394)
.|+...++..||.+|...+ ..+.|..+..+++. ..|....+|..++.++....-+ .++..|.
T Consensus 372 -----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--------~~~~d~~a~l~laql~e~~d~~-~sL~~~~ 437 (1018)
T KOG2002|consen 372 -----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--------QTPVDSEAWLELAQLLEQTDPW-ASLDAYG 437 (1018)
T ss_pred -----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHhcChH-HHHHHHH
Confidence 3555556666777776664 34555555555554 2366778888999887765544 4499999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHHHHhcCch
Q 016124 295 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES--EEVMLTLKKVVSYLDKLGRKE 372 (394)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~ 372 (394)
.|+.+......+ -....++++|..++..|++. +|...|.+|+.........+. .......+++|+++...++++
T Consensus 438 ~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~-~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 438 NALDILESKGKQ---IPPEVLNNVASLHFRLGNIE-KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChH-HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 999988876544 23457999999999999999 999999999988554333222 123556899999999999999
Q ss_pred hhhhhHHHHHHHHHHH
Q 016124 373 EKFPLKKRLSNLRMKY 388 (394)
Q Consensus 373 ~A~~~~~~a~~~~~~~ 388 (394)
.|.+.|..++...+.+
T Consensus 514 ~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGY 529 (1018)
T ss_pred HHHHHHHHHHHHCchh
Confidence 9999999998876654
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.2e-21 Score=180.01 Aligned_cols=327 Identities=11% Similarity=-0.035 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
..++..++.++...|++++|+..+++++.. .|.... +..+|.++...|++++|+..++++++.
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-------- 145 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-------- 145 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 344556666666666666666666666654 122333 667788888888888888888888876
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHH---------------------------------------HHHHHHHhhC-
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSR---------------------------------------ILKIYTKVYG- 135 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------------------------------al~~~~~~~~- 135 (394)
.|....++..++.++...|..++|+..+++ |+..++....
T Consensus 146 ~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 146 APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 455556666778888777777766655542 2222222110
Q ss_pred -CC----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016124 136 -EN----DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 210 (394)
Q Consensus 136 -~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 210 (394)
+. .+....+.......+...|++++|+..|+++++. ++..|.... ..+|.+|...|++++|+..|+
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-------~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-------GQIIPPWAQ--RWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-------CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHH
Confidence 11 1222233333222346779999999999998764 122122222 336889999999999999999
Q ss_pred HHHHHHHHhhCCCC-ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh---c--CCCCCc--chHHHHHHHHHHHh
Q 016124 211 ECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT---V--GPDDQS--ISFPMLHLGITLYH 282 (394)
Q Consensus 211 ~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~--~~~~~~--~~~~~~~la~~~~~ 282 (394)
+++.. .+.. +........++.++...|++++|+..++++....... . ....|. ...++..++.++..
T Consensus 297 ~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 297 ELFYH-----PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHhhc-----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 98753 1111 1123456677888899999999999999888742110 0 011222 24567789999999
Q ss_pred hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 016124 283 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV 362 (394)
Q Consensus 283 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 362 (394)
.|++++|+..+++++... |.....+..+|.++...|+++ +|+..+++++.+ .|+....+..+|
T Consensus 372 ~g~~~eA~~~l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~-~A~~~l~~al~l--------~Pd~~~l~~~~a 434 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA--------PGNQGLRIDYASVLQARGWPR-AAENELKKAEVL--------EPRNINLEVEQA 434 (765)
T ss_pred cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhh--------CCCChHHHHHHH
Confidence 999999999999998754 444568899999999999999 999999999975 355566888899
Q ss_pred HHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124 363 SYLDKLGRKEEKFPLKKRLSNLRMKYKQ 390 (394)
Q Consensus 363 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 390 (394)
.++...|++++|...++++++..++...
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999988766544
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.7e-21 Score=179.04 Aligned_cols=331 Identities=12% Similarity=0.041 Sum_probs=239.8
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
+|..+.++..+|..+...|++++|+..+++++... |....+...++.++...|++++|+..+++++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~---- 112 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG---- 112 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 45556678899999999999999999999999862 233445678999999999999999999999886
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA--- 168 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--- 168 (394)
.|.... +..+|.++...|++++|+..++++++. .|....++..++.++...|..++|+..++++
T Consensus 113 ----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 113 ----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred ----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 455556 888999999999999999999999987 3333445566777777777777766555521
Q ss_pred ------------------------------------HHHHHhcc---cCCCc-hHHHHHHHHHHHHHHHHcCChHHHHHH
Q 016124 169 ------------------------------------LRVIKDSN---YMSLD-DSIMENMRIDLAELLHIVGRGQEGREL 208 (394)
Q Consensus 169 ------------------------------------~~~~~~~~---~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 208 (394)
++.++... ...++ .+....+.......+...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 11111100 00111 122233333322344677999999999
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHhhcChH
Q 016124 209 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDK 287 (394)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 287 (394)
|++++.. ++..|..... .+|.+|...|++++|+..|++++.. .+..+ ........++.++...|+++
T Consensus 260 ~~~ll~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 260 YQRLKAE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYH-----PETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHHhhcc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHHHHHHhcccHH
Confidence 9997754 1223444333 3688999999999999999998762 11121 12345567788889999999
Q ss_pred HHHHHHHHHHHHHHHH---c--CCCCh--hHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 016124 288 EAEKLVLEALYIREIA---F--GKDSL--PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK 360 (394)
Q Consensus 288 ~A~~~~~~a~~~~~~~---~--~~~~~--~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 360 (394)
+|+..++++....... . ...+| ........++.++...|+.+ +|++.+++++.. .|.....+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~-eA~~~l~~al~~--------~P~n~~l~~~ 398 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP-QAEMRARELAYN--------APGNQGLRID 398 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHHH
Confidence 9999999887643100 0 00112 23456778999999999999 999999999864 3444678899
Q ss_pred HHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124 361 VVSYLDKLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 361 la~~~~~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
+|.++...|++++|+..+++++.+.+..
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999987654
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.1e-20 Score=162.75 Aligned_cols=321 Identities=18% Similarity=0.151 Sum_probs=252.1
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
++..+.++..|+..|+..|+|..+..+...++... ...+..+..++.+|.+|..+|+|++|..+|.+++..
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---- 336 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---- 336 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----
Confidence 34445668889999999999999999999988764 234677889999999999999999999999999876
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC----CHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG----NAEEAVELYKK 167 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 167 (394)
++....-.+..+|.++...|+++.|..+|++.+.. .|....++..+|.+|...+ .-+.|..+..+
T Consensus 337 ---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 337 ---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred ---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 22234667889999999999999999999999876 3555567777888888775 55677777777
Q ss_pred HHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHH
Q 016124 168 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 247 (394)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 247 (394)
++... +.-..++..++.++... +...++..|..|+.+....... .-...++++|..++..|++.+|
T Consensus 406 ~~~~~----------~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 406 VLEQT----------PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred HHhcc----------cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHH
Confidence 76642 22356678888887655 4555599999999888776543 3356789999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124 248 ERLLRICLDIMTKTVGPDD--QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 325 (394)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (394)
...|..++.........+. .......+++|.++...++++.|.+.|...+. .||....++..+|......
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HCchhHHHHHHhhHHHHhc
Confidence 9999999987554332222 12345678999999999999999999998876 5688889999999777777
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 326 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 326 g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
++.. +|...+..++.+- ..+ +.++.-+|.++....++.-|..-|+..+.
T Consensus 544 ~~~~-ea~~~lk~~l~~d-----~~n---p~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 544 NNLY-EASLLLKDALNID-----SSN---PNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred cCcH-HHHHHHHHHHhcc-----cCC---cHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 7787 9999999998752 223 44566678888888888888886666543
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=3.2e-21 Score=177.66 Aligned_cols=292 Identities=9% Similarity=-0.040 Sum_probs=229.1
Q ss_pred CCchH--HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124 10 DDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 87 (394)
Q Consensus 10 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 87 (394)
+..|. .+.+++.+|.++.. +++.+|+..+.+++... ++. .....+|..+...|++++|+..|+++...
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PDA----WQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cch----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 34455 77789999999987 89999999999988763 221 13556677788999999999999986442
Q ss_pred HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016124 88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 167 (394)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 167 (394)
.+. ...+..+|.++...|++++|+.++++++.. .|........++......|++++|+..+++
T Consensus 539 --------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 539 --------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred --------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111 234678899999999999999999999875 233334445566666778999999999999
Q ss_pred HHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHH
Q 016124 168 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 247 (394)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 247 (394)
++++. |+ ...+.++|.++...|++++|+..+++++.. .|....++.++|.++...|++++|
T Consensus 602 AL~l~-------P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 602 SLNIA-------PS----ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHhC-------CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99852 32 346789999999999999999999999985 567778999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 016124 248 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 327 (394)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (394)
+..+++++++ .|....++.++|.++...|++++|+..++++++.. |..+.+....|.+.....+
T Consensus 663 i~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 663 REMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--------DNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCchhhhhhhHHHHHHHH
Confidence 9999999984 56777899999999999999999999999999754 5556667778888877777
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchh
Q 016124 328 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 373 (394)
Q Consensus 328 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 373 (394)
+. .|.+.+.++..+. |... +-...|.++...+++-.
T Consensus 727 ~~-~a~~~~~r~~~~~--------~~~~-a~~~~g~~~~~~~~~~~ 762 (987)
T PRK09782 727 FR-RLHEEVGRRWTFS--------FDSS-IGLRSGAMSTANNNVGG 762 (987)
T ss_pred HH-HHHHHHHHHhhcC--------ccch-hccccchHhhhcccccC
Confidence 77 7777777766532 2222 55566667776666543
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.1e-20 Score=148.96 Aligned_cols=303 Identities=15% Similarity=0.124 Sum_probs=225.8
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHh
Q 016124 22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 101 (394)
Q Consensus 22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 101 (394)
++.+|....+.++++.-++....+ .-|.....-...|.+.....++++|+..|+..+.. +|....
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~ 297 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLD 297 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcch
Confidence 444555555555555555444333 11222333445677788888888888888876653 343333
Q ss_pred hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124 102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 181 (394)
Q Consensus 102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 181 (394)
-+....++++-..+-.+---+.+.+..+ +.-...++..+|+-|...++.++|+.+|++|+++.++
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~------- 362 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK------- 362 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-------
Confidence 3334444444444433322222333332 1222345677899999999999999999999996432
Q ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124 182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 261 (394)
Q Consensus 182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 261 (394)
...++..+|.-|..+.+...|++.|+.|+++ .|..-.+|+.||+.|.-++-+.=|+-+|++|...
T Consensus 363 ---~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---- 427 (559)
T KOG1155|consen 363 ---YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---- 427 (559)
T ss_pred ---hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc----
Confidence 3567788999999999999999999999997 4666789999999999999999999999999984
Q ss_pred cCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124 262 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 341 (394)
Q Consensus 262 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~ 341 (394)
.|...+.|..||.||.+.++.++|+++|.+++... +. ...++..||.+|.+.++.+ +|..+|++.++
T Consensus 428 ----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------dt--e~~~l~~LakLye~l~d~~-eAa~~yek~v~ 494 (559)
T KOG1155|consen 428 ----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------DT--EGSALVRLAKLYEELKDLN-EAAQYYEKYVE 494 (559)
T ss_pred ----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------cc--chHHHHHHHHHHHHHHhHH-HHHHHHHHHHH
Confidence 46667888999999999999999999999998743 11 3467899999999999999 99999999998
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 342 IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
.. ...|...|.+..+...|+..+.+.+++++|..+..+++.
T Consensus 495 ~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 495 VS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 76 345667788888888899999999999999887665554
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=8.8e-21 Score=174.78 Aligned_cols=267 Identities=15% Similarity=0.044 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124 57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 136 (394)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 136 (394)
...++..+|.++.. |++.+|+..+.+++... |.. .....+|..+...|++++|+..++++... .+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p 540 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH-----DM 540 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CC
Confidence 66789999999987 89999999999988762 222 23556677778999999999999987543 11
Q ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124 137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 216 (394)
Q Consensus 137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 216 (394)
. ...+..+|.++...|++++|+.+++++++.. ++.. ..+..++......|++++|+..+++++..
T Consensus 541 ~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~---~l~~~La~~l~~~Gr~~eAl~~~~~AL~l- 605 (987)
T PRK09782 541 S----NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDN---ALYWWLHAQRYIPGQPELALNDLTRSLNI- 605 (987)
T ss_pred C----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence 1 1235788999999999999999999998742 2222 22344566666779999999999999975
Q ss_pred HHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124 217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 296 (394)
Q Consensus 217 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (394)
.|. ...+.++|.++.+.|++++|+..+++++.+ .|....++.++|.++...|++++|+..++++
T Consensus 606 -------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 606 -------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred -------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344 678899999999999999999999999984 5777789999999999999999999999999
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhh
Q 016124 297 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP 376 (394)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 376 (394)
++.. |....++.++|.++...|+++ +|+..+++++++ .|+...+....|.+.....++..|.+
T Consensus 670 L~l~--------P~~~~a~~nLA~al~~lGd~~-eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 670 HKGL--------PDDPALIRQLAYVNQRLDDMA-ATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHhC--------CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 9854 445568999999999999999 999999999975 35667777888999999999999999
Q ss_pred hHHHHHHHHH
Q 016124 377 LKKRLSNLRM 386 (394)
Q Consensus 377 ~~~~a~~~~~ 386 (394)
.+.+...+..
T Consensus 733 ~~~r~~~~~~ 742 (987)
T PRK09782 733 EVGRRWTFSF 742 (987)
T ss_pred HHHHHhhcCc
Confidence 8888876543
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.3e-20 Score=148.82 Aligned_cols=273 Identities=14% Similarity=0.104 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
..-...|.+.+.+.++++|+..|+...+. +|....-+...+++++-..+-.+---+.+.+..+ +
T Consensus 263 ~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------d 326 (559)
T KOG1155|consen 263 YIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------D 326 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------c
Confidence 33456788899999999999999987653 3444444445556665555433333333333333 3
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
.-.+.+...+|+.|...++.++|+.+|++|+.+ +|....++..+|.-|..+.+...|+..|++|+++.+..
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D- 397 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD- 397 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-
Confidence 344567778999999999999999999999987 67778899999999999999999999999999975432
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
.++|+.+|..|..++-+.=|+-+|++|... .|.....+..||.+|.+.++.++|+.+|.+++.
T Consensus 398 ---------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 398 ---------YRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred ---------HHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 567899999999999999999999999885 455667888999999999999999999999998
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 336 (394)
. ......++..||.+|.+.++..+|..+|++.++.. ...|...+.+..+...|+.-+.+.++++ +|-.+.
T Consensus 461 ~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~-~As~Ya 530 (559)
T KOG1155|consen 461 L--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFD-EASYYA 530 (559)
T ss_pred c--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchH-HHHHHH
Confidence 3 12245688999999999999999999999999876 4445666778888888999999999999 888877
Q ss_pred HHHHH
Q 016124 337 KRVLR 341 (394)
Q Consensus 337 ~~al~ 341 (394)
.+++.
T Consensus 531 ~~~~~ 535 (559)
T KOG1155|consen 531 TLVLK 535 (559)
T ss_pred HHHhc
Confidence 77664
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-19 Score=148.21 Aligned_cols=275 Identities=17% Similarity=0.222 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
..++...+..++..++|.+..+.++..++.. +-++... -..+| ++...|+..+= |.-+.++.+ .
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-----pfh~~~~--~~~ia-~l~el~~~n~L---f~lsh~LV~-----~ 307 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-----PFHLPCL--PLHIA-CLYELGKSNKL---FLLSHKLVD-----L 307 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-----CCCcchH--HHHHH-HHHHhcccchH---HHHHHHHHH-----h
Confidence 3456677888889999999888888877752 2222222 23445 67777765544 443434332 3
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.|..+.+|+.+|..|...|++.+|..+|.++-.+ ++..+.+|...|..+...|..++|+..|..|-++...
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G- 378 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG- 378 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-
Confidence 6788889999999999999999999999999876 5777789999999999999999999999999998753
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124 176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 255 (394)
Q Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 255 (394)
..-|. ..+|.-|...++++-|..+|.+|+.++ |....++..+|.+....+.+.+|..+|+.++
T Consensus 379 ----~hlP~-----LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 379 ----CHLPS-----LYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred ----CcchH-----HHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 23333 458899999999999999999999873 5555678899999999999999999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHH
Q 016124 256 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 335 (394)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~ 335 (394)
...+... +..+.....+.+||.++...+.+++|+.++++++.+. |..+.++..+|-+|..+|+.+ .|+++
T Consensus 442 ~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld-~Aid~ 511 (611)
T KOG1173|consen 442 EVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLD-KAIDH 511 (611)
T ss_pred HHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChH-HHHHH
Confidence 6555543 3334566678999999999999999999999999865 555678999999999999999 99999
Q ss_pred HHHHHHH
Q 016124 336 LKRVLRI 342 (394)
Q Consensus 336 ~~~al~~ 342 (394)
|.+++.+
T Consensus 512 fhKaL~l 518 (611)
T KOG1173|consen 512 FHKALAL 518 (611)
T ss_pred HHHHHhc
Confidence 9999975
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=1.5e-18 Score=150.24 Aligned_cols=315 Identities=15% Similarity=0.104 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
...+...|+..+..|++++|...+.+++.. .|....++..||.+|..+|+.+++...+-.|-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------- 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------- 202 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence 455678888999999999999999999886 3666788999999999999999999988777654
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.|.....|..++.....+|++.+|.-+|.+|++. .|.........+.+|.++|+...|...|.+++....
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-- 272 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-- 272 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--
Confidence 3444478889999999999999999999999987 444566778889999999999999999999998753
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124 176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 255 (394)
Q Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 255 (394)
..+...........+..+...++-+.|+..++.++..... ......+..++.++.....++.|........
T Consensus 273 ---~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~------~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 273 ---PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD------EASLEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred ---chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc------cccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 1122333333355677888888888999988888773221 1222334566777777777777766654433
Q ss_pred H----------------------HHHh-------------h---------------------cCCCCCcchHHHHHHHHH
Q 016124 256 D----------------------IMTK-------------T---------------------VGPDDQSISFPMLHLGIT 279 (394)
Q Consensus 256 ~----------------------~~~~-------------~---------------------~~~~~~~~~~~~~~la~~ 279 (394)
. +... . ......+....+..++..
T Consensus 344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA 423 (895)
T ss_pred ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence 3 0000 0 000012334557788999
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 016124 280 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 359 (394)
Q Consensus 280 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 359 (394)
+...|++.+|+.++..+... .....+..|..+|.+|..+|.++ +|+++|++++.. .|+..++..
T Consensus 424 l~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e-~A~e~y~kvl~~--------~p~~~D~Ri 487 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYE-EAIEFYEKVLIL--------APDNLDARI 487 (895)
T ss_pred HHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CCCchhhhh
Confidence 99999999999999877652 22233668999999999999999 999999999974 466678889
Q ss_pred HHHHHHHHhcCchhhhhhHHHH
Q 016124 360 KVVSYLDKLGRKEEKFPLKKRL 381 (394)
Q Consensus 360 ~la~~~~~~g~~~~A~~~~~~a 381 (394)
.|+.++..+|++++|.+.+++.
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcc
Confidence 9999999999999999988773
No 30
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=6.3e-18 Score=157.23 Aligned_cols=309 Identities=11% Similarity=0.043 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
.+|..+-..+...|++++|...+.++.+. +. .| ....+..+...|.+.|++++|..+|+++... ..
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-----Gl-~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-------Gv 503 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEA-----GL-KA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-------GV 503 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-------CC
Confidence 34566667777888888888888776553 11 11 2335667777888888888888888776543 11
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
.....++..+...|.+.|++++|...|.+.... + -.|+ ..+++.+...|...|++++|.+++.++......
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-----G-v~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-- 574 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP-- 574 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC--
Confidence 223456777777888888888888887776542 1 1122 345677777777777777777777776542110
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
..|+ ..++..+...|.+.|++++|.++|++..+. ..+....++..+...|.+.|++++|..+|.+...
T Consensus 575 -i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 575 -IDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred -CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1122 123455666677777777777777665432 1122334566666666666777776666666544
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 336 (394)
. .-.|+ ..++..+...+...|++++|.++++++.+. ..+....++..+...|.+.|+.+ +|...|
T Consensus 643 ~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~e-eA~~lf 707 (1060)
T PLN03218 643 K------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWK-KALELY 707 (1060)
T ss_pred c------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 1 11222 334555556666666666666666554431 11112234555555555555555 555555
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 382 (394)
Q Consensus 337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 382 (394)
++..+. + ..|+ ..++..+...|.+.|++++|.++|+++.
T Consensus 708 ~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 708 EDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 544321 0 1111 2345555555555555555555555543
No 31
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=7e-18 Score=156.96 Aligned_cols=311 Identities=14% Similarity=0.074 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
.++..+...|...|++++|..+|+++... +. .| ...++..+...|.+.|++++|..+|.+.... ..
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~-----Gv-~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-------Gv 538 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNA-----GV-EA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSK-------NV 538 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-------CC
Confidence 45778889999999999999999988653 11 12 2456888899999999999999999887653 11
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
.....++..+...|.+.|++++|...+.+....... -.|+ ..++..+...|.+.|++++|.++|+++.+.-
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g---- 609 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN---- 609 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----
Confidence 223567889999999999999999999988653111 1222 3577888899999999999999999887631
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
..++ ..++..+...|.+.|++++|..+|++.... | -.|+ ..++..+...+.+.|++++|.+++..+.+
T Consensus 610 -i~p~----~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 610 -IKGT----PEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred -CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1222 235678889999999999999999987652 1 2333 45788899999999999999999998876
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 336 (394)
. .......++..+...|.+.|++++|..+|++.... .-.|+ ..+|..|...|.+.|+.+ +|.++|
T Consensus 678 ~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~Pd-vvtyN~LI~gy~k~G~~e-eAlelf 742 (1060)
T PLN03218 678 Q-------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRPT-VSTMNALITALCEGNQLP-KALEVL 742 (1060)
T ss_pred c-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHH-HHHHHH
Confidence 2 23344567889999999999999999999886542 12233 456899999999999999 999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 384 (394)
Q Consensus 337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 384 (394)
++.... | -.|+ ..++..+...+.+.|++++|..++.++.+.
T Consensus 743 ~eM~~~-----G-i~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 743 SEMKRL-----G-LCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 987642 1 1233 346677778999999999999999988653
No 32
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-18 Score=142.58 Aligned_cols=328 Identities=14% Similarity=0.119 Sum_probs=254.4
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
-.-|+..+..|+|+.|+.+|..++.+. |.....+.+...+|...|+|++|++--.+.+++ .|.+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~--------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------~p~w 69 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLS--------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--------NPDW 69 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccC--------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--------CCch
Confidence 456888899999999999999999873 223445777888899999999999888888776 6788
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh----------------------------------------------
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV---------------------------------------------- 133 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------------------- 133 (394)
+..|..+|..+.-+|+|++|+..|.+.++.-...
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 8999999999999999999999988776431100
Q ss_pred ------------------------------------------------hCC------------CchH------HHHHHHH
Q 016124 134 ------------------------------------------------YGE------------NDGR------VGMAMCS 147 (394)
Q Consensus 134 ------------------------------------------------~~~------------~~~~------~~~~~~~ 147 (394)
..+ +... .+.....
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 000 0000 1223567
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccH
Q 016124 148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 227 (394)
Q Consensus 148 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 227 (394)
+|.......+++.|+..|..++++... ..-+.+.+.+|...|.+.+.+.....+++....... +....
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~-----------it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klI 297 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATD-----------ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLI 297 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhh-----------hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHH
Confidence 788888889999999999999987521 344578899999999999999988888776443321 11225
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh--hc----------------CCCCCcchHHHHHHHHHHHhhcChHHH
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTK--TV----------------GPDDQSISFPMLHLGITLYHLNRDKEA 289 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (394)
+.++..+|..|...++++.|+.+|++++.-.+. .. .--.|....-...-|..++..|+|..|
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 556667888999999999999999998764332 00 001233444455669999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 016124 290 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG 369 (394)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 369 (394)
+..|.+++... |+.+..+.+.|-+|.++|++. .|+...+.++++ +|.....+..-|.++..+.
T Consensus 378 v~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~-~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 378 VKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYP-EALKDAKKCIEL--------DPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHH
Confidence 99999988732 777889999999999999999 999999998875 6888899999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHHhh
Q 016124 370 RKEEKFPLKKRLSNLRMKYKQKV 392 (394)
Q Consensus 370 ~~~~A~~~~~~a~~~~~~~~~~~ 392 (394)
+|++|.+.|.++++..++..+.+
T Consensus 441 ~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHH
Confidence 99999999999999887766543
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.1e-17 Score=134.73 Aligned_cols=285 Identities=16% Similarity=0.128 Sum_probs=226.2
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHhcCCCCc
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESA 97 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 97 (394)
.+.+-.+...|+++.|++.+.-. ++ .+......+-.++..+++.+| ++.+|..+...++.+ +.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~----~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dr 487 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVF----EK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DR 487 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHH----Hh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cc
Confidence 45667788999999998876432 22 233334445566776666654 788899998888876 34
Q ss_pred chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124 98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 177 (394)
Q Consensus 98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 177 (394)
..+.++.+-|.+-+..|++++|.+.|++++. ++.....+++++|..+..+|+.++|+.+|-+...+....
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn-- 557 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-- 557 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--
Confidence 4567788899999999999999999999985 356667899999999999999999999999988887643
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
+.++..++.+|..+.+..+|++++.++..+ .|....++..||.+|-+.|+-.+|.+++-.+..
T Consensus 558 --------~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdksqafq~~ydsyr- 620 (840)
T KOG2003|consen 558 --------AEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR- 620 (840)
T ss_pred --------HHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-
Confidence 567789999999999999999999988764 355566788999999999999999998876655
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124 258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 337 (394)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~ 337 (394)
..|....+...||..|....-+++|+.+|+++.-+. |........++.|+.+.|++. +|.+.|+
T Consensus 621 -------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc~rrsgnyq-ka~d~yk 684 (840)
T KOG2003|consen 621 -------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASCFRRSGNYQ-KAFDLYK 684 (840)
T ss_pred -------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHhcccHH-HHHHHHH
Confidence 346667777889999999999999999999986543 555566677899999999999 9999888
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 016124 338 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 370 (394)
Q Consensus 338 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 370 (394)
..-.. .|...+++.-|.++.-..|-
T Consensus 685 ~~hrk--------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 685 DIHRK--------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHh--------CccchHHHHHHHHHhccccc
Confidence 76542 45567777777777766664
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1e-18 Score=143.76 Aligned_cols=278 Identities=16% Similarity=0.137 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124 59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138 (394)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 138 (394)
..+...+..++..++|.+..+..+..++. +++.....-..+| ++...|+..+ +|.-+.++.+ ..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~-------dpfh~~~~~~~ia-~l~el~~~n~---Lf~lsh~LV~-----~y 308 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEK-------DPFHLPCLPLHIA-CLYELGKSNK---LFLLSHKLVD-----LY 308 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhh-------CCCCcchHHHHHH-HHHHhcccch---HHHHHHHHHH-----hC
Confidence 34445566677778888888877777765 3333333344556 7777777544 4444444433 35
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 218 (394)
Q Consensus 139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 218 (394)
|..+..|+.+|..|...|++.+|..+|.++..+.. ....+|...|..+...|..++|+..|..|-++...
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~----------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP----------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc----------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 77777899999999999999999999999987532 23556788999999999999999999999877532
Q ss_pred hhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 219 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 219 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
. ......+|.-|...+++.-|..+|.+|+.+. |.....+..+|.+....+.|.+|..+|+.++.
T Consensus 379 ~--------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 379 C--------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred C--------cchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 2 1234468899999999999999999999863 44556778999999999999999999999997
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhH
Q 016124 299 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 378 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 378 (394)
..+... +..+....++.+||.++.+++.++ +|+.++++++.+ .|..+.++..+|.+|..+|+++.|++.|
T Consensus 443 ~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~-eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 443 VIKSVL-NEKIFWEPTLNNLGHAYRKLNKYE-EAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred Hhhhcc-ccccchhHHHHhHHHHHHHHhhHH-HHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 666543 333455667899999999999999 999999999975 3455778899999999999999999999
Q ss_pred HHHHHHHHHH
Q 016124 379 KRLSNLRMKY 388 (394)
Q Consensus 379 ~~a~~~~~~~ 388 (394)
.+++.+.+..
T Consensus 513 hKaL~l~p~n 522 (611)
T KOG1173|consen 513 HKALALKPDN 522 (611)
T ss_pred HHHHhcCCcc
Confidence 9999887653
No 35
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.84 E-value=8.4e-18 Score=130.28 Aligned_cols=322 Identities=14% Similarity=0.140 Sum_probs=245.2
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
.+|....-...+|..++..|++..|+..|..|++. +|....+++..|.+|..+|+-.-|+.-+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 45555666789999999999999999999999874 4777788999999999999999999999999987
Q ss_pred hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHCCCH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV------------GMAMCSLAHAKCANGNA 158 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------------~~~~~~la~~~~~~g~~ 158 (394)
.|+...+....|.++.++|++++|+.-|...++.-. +.... ...+......+...|+.
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~-----s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP-----SNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 678888889999999999999999999999886421 11111 12233445556778999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 016124 159 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 238 (394)
Q Consensus 159 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 238 (394)
..|+.+....+++. +.-+..+...+.+|...|+...|+.-++.+-++. .+....++.++.++
T Consensus 172 ~~ai~~i~~llEi~----------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ----------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLL 233 (504)
T ss_pred hhHHHHHHHHHhcC----------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHH
Confidence 99999999998863 2224556778999999999999999998876652 34456788999999
Q ss_pred HHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHH---------HHHHHhhcChHHHHHHHHHHHHHHHHHcCCC-C
Q 016124 239 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL---------GITLYHLNRDKEAEKLVLEALYIREIAFGKD-S 308 (394)
Q Consensus 239 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~ 308 (394)
...|+.+.++...++++.+ .++|......|..+ +.-....++|.++++..++.++.. |. .
T Consensus 234 Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-----p~~~ 303 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-----PEET 303 (504)
T ss_pred HhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----Cccc
Confidence 9999999999999999883 34443333333222 222334455555555555554421 22 1
Q ss_pred hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124 309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
+-.......+..|+...|++- +|+....+++++ .|+.+.++...+.+|.-...|+.|+.-|++|.++.+..
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~-eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFG-EAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred ceeeeeeheeeecccccCCHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 222344556778888889888 999888888864 57788999999999999999999999999999887665
Q ss_pred HH
Q 016124 389 KQ 390 (394)
Q Consensus 389 ~~ 390 (394)
.+
T Consensus 375 ~~ 376 (504)
T KOG0624|consen 375 TR 376 (504)
T ss_pred HH
Confidence 43
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=4.4e-17 Score=125.23 Aligned_cols=302 Identities=16% Similarity=0.162 Sum_probs=224.2
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHh
Q 016124 22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 101 (394)
Q Consensus 22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 101 (394)
.|.-+.-..+.++|++.|..+++. +|...++...+|+.|...|..+.|+.+.+..+.. .+-.......
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHH
Confidence 455566678899999999888773 5778899999999999999999999988776542 1111223456
Q ss_pred hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124 102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 181 (394)
Q Consensus 102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 181 (394)
++..||.-|+..|-++.|+..|....+. ......++..|..+|....+|++|++..++...+.. .+.
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-----q~~ 175 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-----QTY 175 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-----ccc
Confidence 7889999999999999999999987753 223345788899999999999999999998887643 345
Q ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124 182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 261 (394)
Q Consensus 182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 261 (394)
...++..+..+|..+....+.+.|...+.+|++. +|....+-..+|.++...|+++.|++.++.+++
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e----- 242 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE----- 242 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH-----
Confidence 6778889999999999999999999999999984 566667777899999999999999999999887
Q ss_pred cCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124 262 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 341 (394)
Q Consensus 262 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~ 341 (394)
.++.....+...|..+|...|+.++....+.++.+... .+. ....++..-....-.+ .|..++.+-+.
T Consensus 243 --Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~~---~~l~l~~lie~~~G~~-~Aq~~l~~Ql~ 310 (389)
T COG2956 243 --QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GAD---AELMLADLIELQEGID-AAQAYLTRQLR 310 (389)
T ss_pred --hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Ccc---HHHHHHHHHHHhhChH-HHHHHHHHHHh
Confidence 45556777888999999999999999999999877541 122 2233444433333344 66666655543
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHH---hcCchhhhhhHHHHH
Q 016124 342 IQEREFGSESEEVMLTLKKVVSYLDK---LGRKEEKFPLKKRLS 382 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~ 382 (394)
.+|.....+ .+...... .|+..+.+..++..+
T Consensus 311 --------r~Pt~~gf~-rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 311 --------RKPTMRGFH-RLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred --------hCCcHHHHH-HHHHhhhccccccchhhhHHHHHHHH
Confidence 245444333 33333222 234555555555544
No 37
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=7.9e-19 Score=134.98 Aligned_cols=285 Identities=14% Similarity=0.095 Sum_probs=227.3
Q ss_pred hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc--chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 016124 54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA--DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 131 (394)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 131 (394)
.|....+++. .+++...+...|.......+++-......... ...+....+|.||..+|-+.+|.+.++.++...
T Consensus 177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~- 253 (478)
T KOG1129|consen 177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF- 253 (478)
T ss_pred ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-
Confidence 3555666554 35666778888887777766654332222222 223445679999999999999999999998752
Q ss_pred HhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124 132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 211 (394)
Q Consensus 132 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (394)
.+ ..++..++.+|.+..++..|+..+.+.++.+. .. ...+..+++++..++++++|.++|+.
T Consensus 254 -----~~---~dTfllLskvY~ridQP~~AL~~~~~gld~fP-------~~---VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 254 -----PH---PDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-------FD---VTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred -----Cc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-------ch---hhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 23 34677899999999999999999999988542 11 34557899999999999999999999
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHH
Q 016124 212 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 291 (394)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (394)
+++. +|....+...+|.-|.-.++++-|+.+|++.+++ | ......+.++|.|++-.++++-++.
T Consensus 316 vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G---~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 316 VLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----G---AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----c---CCChHHHhhHHHHHHhhcchhhhHH
Confidence 9874 5666667777888899999999999999999985 2 2334577899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 016124 292 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK 371 (394)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 371 (394)
.|++|+... .+....+.+|++||.+....|++. -|..+|+-++. .+++..+++.+||.+-.+.|+.
T Consensus 380 sf~RAlsta-----t~~~~aaDvWYNlg~vaV~iGD~n-lA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 380 SFQRALSTA-----TQPGQAADVWYNLGFVAVTIGDFN-LAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHhhc-----cCcchhhhhhhccceeEEeccchH-HHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCch
Confidence 999999876 333456789999999999999999 99999998874 4677789999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 016124 372 EEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 372 ~~A~~~~~~a~~~~~~~~ 389 (394)
++|..++..+-.+.+.+-
T Consensus 446 ~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHHHHHHHHhhhhCcccc
Confidence 999999999887766543
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=3.5e-20 Score=150.99 Aligned_cols=266 Identities=20% Similarity=0.185 Sum_probs=107.6
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
..+|.+++..|++++|+..+.+.+... .+|.....+..+|.+....+++++|+..|++.+... +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------ccc
Confidence 367999999999999999997665432 123445667788999999999999999999998752 223
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 179 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 179 (394)
...+..++.+ ...+++++|..++.++.+.. .++ ..+.....++...++++++...++++..... .
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~ 142 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELPA-----A 142 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred cccccccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----C
Confidence 4456666776 68999999999998876542 122 3345567788999999999999999775221 1
Q ss_pred CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124 180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259 (394)
Q Consensus 180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 259 (394)
+++ ...+..+|.++...|++++|+..++++++. .|....+...++.++...|+++++.+.+.......
T Consensus 143 ~~~---~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~- 210 (280)
T PF13429_consen 143 PDS---ARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA- 210 (280)
T ss_dssp -T----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 122 345678999999999999999999999986 46666778889999999999999888887766532
Q ss_pred hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 016124 260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 339 (394)
Q Consensus 260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~a 339 (394)
+.+| ..+..+|.++...|++++|+.++++++... |.....+..+|.++...|+.+ +|..+++++
T Consensus 211 ----~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--------p~d~~~~~~~a~~l~~~g~~~-~A~~~~~~~ 274 (280)
T PF13429_consen 211 ----PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLN--------PDDPLWLLAYADALEQAGRKD-EALRLRRQA 274 (280)
T ss_dssp ----HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--------TT-HHHHHHHHHHHT----------------
T ss_pred ----cCHH---HHHHHHHHHhcccccccccccccccccccc--------ccccccccccccccccccccc-ccccccccc
Confidence 2233 345678999999999999999999988743 444557889999999999999 999999988
Q ss_pred HHH
Q 016124 340 LRI 342 (394)
Q Consensus 340 l~~ 342 (394)
+..
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=2.1e-20 Score=152.37 Aligned_cols=265 Identities=23% Similarity=0.234 Sum_probs=109.2
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124 63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 142 (394)
Q Consensus 63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 142 (394)
.+|.++...|++++|++.+.+.+... .++.....+..+|.+....++++.|+..|++.+..- +...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~ 78 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANP 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------cccc
Confidence 66999999999999999997655432 124445677788999999999999999999998752 2233
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124 143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222 (394)
Q Consensus 143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 222 (394)
..+..++.+ ...+++++|..+++++.+.. +++ ..+.....++...++++++...++++... .
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~ 140 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDP----RYLLSALQLYYRLGDYDEAEELLEKLEEL------P 140 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T
T ss_pred ccccccccc-cccccccccccccccccccc-------ccc----chhhHHHHHHHHHhHHHHHHHHHHHHHhc------c
Confidence 445666666 68999999999998877632 121 22344667788999999999999987642 1
Q ss_pred CCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124 223 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 302 (394)
Q Consensus 223 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 302 (394)
..+.....+..+|.++...|++++|+..++++++. .|....+...++.++...|+.+++.+.+.......
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-- 210 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-- 210 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence 23455678889999999999999999999999985 46666778889999999999999888887766543
Q ss_pred HcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124 303 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 382 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 382 (394)
+.+|. .+..+|.++...|+++ +|+.++++++.. +|....++..+|.++...|+.++|..++++++
T Consensus 211 ---~~~~~---~~~~la~~~~~lg~~~-~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 ---PDDPD---LWDALAAAYLQLGRYE-EALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---HTSCC---HCHHHHHHHHHHT-HH-HHHHHHHHHHHH--------STT-HHHHHHHHHHHT----------------
T ss_pred ---cCHHH---HHHHHHHHhccccccc-cccccccccccc--------cccccccccccccccccccccccccccccccc
Confidence 23333 4678899999999999 999999998864 35556778889999999999999999999987
Q ss_pred HH
Q 016124 383 NL 384 (394)
Q Consensus 383 ~~ 384 (394)
..
T Consensus 276 ~~ 277 (280)
T PF13429_consen 276 RL 277 (280)
T ss_dssp --
T ss_pred cc
Confidence 64
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=1.3e-17 Score=148.08 Aligned_cols=251 Identities=12% Similarity=-0.008 Sum_probs=191.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh---------chhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 29 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---------RAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 29 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
.+.+++|+..|++++++ +|....++..+|.++...+ ++++|...+++++++ +|..
T Consensus 274 ~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~ 337 (553)
T PRK12370 274 PYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNN 337 (553)
T ss_pred HHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCC
Confidence 45678999999999876 3455667778888776443 478999999999886 5667
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 179 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 179 (394)
..++..+|.++...|++++|+..|++++++ +|....++..+|.++...|++++|+..+++++++.
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------- 402 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD------- 402 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 788999999999999999999999999987 45555678999999999999999999999999863
Q ss_pred CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124 180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259 (394)
Q Consensus 180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 259 (394)
|.++.. ...++.++...|++++|+..+++++.. ..|.....+..+|.++...|++++|...+.+...
T Consensus 403 P~~~~~---~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--- 469 (553)
T PRK12370 403 PTRAAA---GITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--- 469 (553)
T ss_pred CCChhh---HHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---
Confidence 333322 234555677799999999999998764 2355566788999999999999999999987654
Q ss_pred hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 016124 260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 339 (394)
Q Consensus 260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~a 339 (394)
..|........++..|...| ++|...+++.++..... +.++ ..+..++.-.|+.+ .+... +++
T Consensus 470 -----~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~-~~~~~-~~~ 532 (553)
T PRK12370 470 -----QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAI-AEKMW-NKF 532 (553)
T ss_pred -----ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhH-HHHHH-HHh
Confidence 34555666778888888888 48888888876655432 2222 23677777778766 55444 444
Q ss_pred H
Q 016124 340 L 340 (394)
Q Consensus 340 l 340 (394)
.
T Consensus 533 ~ 533 (553)
T PRK12370 533 K 533 (553)
T ss_pred h
Confidence 3
No 41
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.84 E-value=8e-17 Score=125.78 Aligned_cols=350 Identities=16% Similarity=0.089 Sum_probs=267.9
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 98 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 98 (394)
...-|.-++...++.+|+..+.+.+...... ......+-.+..+...+|.|++++.+--..++.+.... +...
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~--ds~~ 81 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE--DSDF 81 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4556777888999999999999988765432 34556677778888999999998887666666554432 3445
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
...++.+++..+....++.+++.+-...+.+-....+ ..-......++..+..++.++++++.|++|+.+....
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--- 155 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--- 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc---
Confidence 6678889999999998888888887766654111000 1122455668999999999999999999999998764
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
.|+..-..++..+|..+....++++|.-+..+|.++.....-.+. .....+++.++..+..+|+..+|.++.+++.+
T Consensus 156 -~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 156 -DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred -CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455555667789999999999999999999999998876542221 12345678899999999999999999999999
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc----hHH
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD----TKL 332 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~~A 332 (394)
+.-.. ++.+....++..+|.+|...|+.+.|..-|++|..+.... .+......++...+.++....-.. -.|
T Consensus 235 lal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Cra 310 (518)
T KOG1941|consen 235 LALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRA 310 (518)
T ss_pred HHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 87665 5667788899999999999999999999999999988765 344455666777777766544333 149
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124 333 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 333 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
+++-++++++..++ |. ...+...+..++.+|..+|.-++=...+.++-+..++.
T Consensus 311 le~n~r~levA~~I-G~-K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 311 LEFNTRLLEVASSI-GA-KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET 364 (518)
T ss_pred hHHHHHHHHHHHHh-hh-hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 99999999998775 32 34567788899999999999888888777776655543
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=7.6e-18 Score=149.54 Aligned_cols=254 Identities=14% Similarity=0.099 Sum_probs=194.1
Q ss_pred hhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh---------CcHHHHHHHHHHHHHHHHHhhCCCchHH
Q 016124 71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRV 141 (394)
Q Consensus 71 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 141 (394)
.+.+++|+.+|++++++ +|....++..+|.++... +++++|...+++++++ +|..
T Consensus 274 ~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~ 337 (553)
T PRK12370 274 PYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNN 337 (553)
T ss_pred HHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCC
Confidence 35678999999999886 566777888888887644 3488999999999986 4555
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124 142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 221 (394)
Q Consensus 142 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 221 (394)
..++..+|.++...|++++|+..+++++++. |+++ .++..+|.++...|++++|+..+++++.+
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~---~a~~~lg~~l~~~G~~~eAi~~~~~Al~l------ 401 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISA---DIKYYYGWNLFMAGQLEEALQTINECLKL------ 401 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 6678899999999999999999999999963 3333 35688999999999999999999999986
Q ss_pred CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124 222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301 (394)
Q Consensus 222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 301 (394)
+|........++.++...|++++|+..+++++.. ..|.....+..+|.++...|++++|...+.+...
T Consensus 402 --~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--- 469 (553)
T PRK12370 402 --DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--- 469 (553)
T ss_pred --CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---
Confidence 2333334445566677789999999999998762 2355666788999999999999999999887543
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124 302 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 381 (394)
..|........++..+...| + +|...+++.++..... +.++ ..+..++.-.|+.+.+..+ +++
T Consensus 470 -----~~~~~~~~~~~l~~~~~~~g--~-~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 470 -----QEITGLIAVNLLYAEYCQNS--E-RALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred -----ccchhHHHHHHHHHHHhccH--H-HHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHHHH-HHh
Confidence 33455556778888888888 3 7888788866654331 1222 2267788888998888877 666
Q ss_pred HHHH
Q 016124 382 SNLR 385 (394)
Q Consensus 382 ~~~~ 385 (394)
.+-+
T Consensus 533 ~~~~ 536 (553)
T PRK12370 533 KNED 536 (553)
T ss_pred hccc
Confidence 5543
No 43
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.83 E-value=1.8e-16 Score=150.89 Aligned_cols=352 Identities=15% Similarity=0.045 Sum_probs=254.2
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 97 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 97 (394)
....+..+...|++++|..++.++...........+ .........++.++...|++++|...+++++.... ..+..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~ 488 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYY 488 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHH
Confidence 345677778899999999999988766432110111 22344555678899999999999999999987521 11122
Q ss_pred chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124 98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 177 (394)
Q Consensus 98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 177 (394)
....+...+|.++...|++++|...+.+++...+.. + .......++.++|.++...|++++|...+++++.+....
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-- 564 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ-- 564 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--
Confidence 234567789999999999999999999999987754 2 223345577899999999999999999999999988764
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
..+..+....++..+|.++...|++++|...+.+++.+..... ......++..++.++...|++++|...+.++..+
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1222233334456789999999999999999999998865332 2234567778999999999999999999999886
Q ss_pred HHhhcCCCCCcc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124 258 MTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336 (394)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 336 (394)
.... ..+... ..........+...|+.+.|..++....... . .........+..++.++...|+++ +|...+
T Consensus 642 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~-~~~~~~~~~~~~~a~~~~~~g~~~-~A~~~l 714 (903)
T PRK04841 642 LGNG--RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---F-ANNHFLQGQWRNIARAQILLGQFD-EAEIIL 714 (903)
T ss_pred Hhcc--cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---C-ccchhHHHHHHHHHHHHHHcCCHH-HHHHHH
Confidence 5442 111111 1111112244556889999888876643311 0 111112233567899999999999 999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
++++...+.. + .......++..+|.++...|+.++|...+.+++++....+
T Consensus 715 ~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 715 EELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 9999986552 2 3346677888999999999999999999999999876543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.4e-18 Score=138.35 Aligned_cols=247 Identities=12% Similarity=0.095 Sum_probs=202.9
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124 13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 92 (394)
Q Consensus 13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 92 (394)
...+.++...|..++-.|++-.|...++.++.+. |.....|..+|.+|....+..+....|.+|..+
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----- 389 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL----- 389 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-----
Confidence 3457888999999999999999999999999874 333334888999999999999999999999887
Q ss_pred CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
+|..+.+|+..|.+++-++++++|..-|++++.+ +|..+..+..++...++++++++++..|+.+...+
T Consensus 390 ---dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF 458 (606)
T KOG0547|consen 390 ---DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF 458 (606)
T ss_pred ---CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6777789999999999999999999999999987 67788889999999999999999999999999876
Q ss_pred HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH-HHHcccHHHHHHHH
Q 016124 173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKNFVEAERLL 251 (394)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~ 251 (394)
... ..++...|.++..++++++|++.|+.++.+-....+. +. .+..+.+-|.+ ..-.+++..|+.++
T Consensus 459 P~~----------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 459 PNC----------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred CCC----------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHH
Confidence 432 4556778999999999999999999999875431110 00 11122222222 22348999999999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124 252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303 (394)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 303 (394)
.+++++ +|..-.++..||.+..++|+.++|+++|+++..+.+..
T Consensus 527 ~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 527 RKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 999984 57777889999999999999999999999998877543
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=9.2e-17 Score=137.56 Aligned_cols=317 Identities=15% Similarity=0.115 Sum_probs=216.0
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 97 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 97 (394)
....-|......|+++.|.+.+.++.+.. |.....+...|.+....|+++.|..++.++.+.. |
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p 149 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------G 149 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C
Confidence 34556777888899999999998776541 2223345567899999999999999999987542 2
Q ss_pred ch-HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 98 DL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 98 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
.. ..+....+.++...|++++|...+++..+. .|....++..++.++...|++++|.+.+.+..+..
T Consensus 150 ~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~---- 217 (409)
T TIGR00540 150 NDNILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG---- 217 (409)
T ss_pred cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC----
Confidence 22 123444589999999999999999988876 34444567889999999999999999998887742
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
..++............-....+..+++.+.+.++..... ...+........++..+...|++++|.+.++++++
T Consensus 218 --~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 218 --LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 122222222212222222333444444555555544311 11224567788899999999999999999999998
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 336 (394)
.. ++++..... ..........++.+.+.+.++++++.. |++|. ...+..+|.++.+.|+++ +|.++|
T Consensus 292 ~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~~~~~~~-~A~~~l 358 (409)
T TIGR00540 292 KL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLMKHGEFI-EAADAF 358 (409)
T ss_pred hC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHHHcccHH-HHHHHH
Confidence 42 222211101 112223344577888888888887643 45553 367889999999999999 999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
+++.... .+|+... +..+|.++...|+.++|.+++++++...-..
T Consensus 359 e~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 359 KNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 9543321 1233333 4488999999999999999999998765443
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=1.4e-17 Score=122.11 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
.....+...+|.-|...|++..|...+++|++. +|....++..++.+|...|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 456778889999999999999999999999997 6778889999999999999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
+|....+++|.|..++.+|+|++|...|++|+. .|.-+....++.|+|.|..+.|+++.|..+|+++++
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~--------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA--------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh--------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 566778899999999999999999999999987 345555567789999999999999999999999998
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 294 (394)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (394)
. +|........++..+...|++..|..++++... ..+..+.++.....+-...|+-+.|-++=.
T Consensus 168 ~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~--------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 168 L--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQ--------RGGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred h--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh--------cccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6 455666778899999999999999999887655 223556666666777788899888877766
Q ss_pred HHHHHH
Q 016124 295 EALYIR 300 (394)
Q Consensus 295 ~a~~~~ 300 (394)
+..+.+
T Consensus 232 qL~r~f 237 (250)
T COG3063 232 QLQRLF 237 (250)
T ss_pred HHHHhC
Confidence 655443
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.8e-19 Score=138.50 Aligned_cols=233 Identities=15% Similarity=0.108 Sum_probs=201.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
..+|.+|...|-+.+|.+.++.++... . ..+.+..++.+|....+...|+..+.+.++. .|..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~------~---~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF------P---HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC------C---chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCch
Confidence 689999999999999999999998753 2 3456778899999999999999999998875 4666
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 179 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 179 (394)
...+..++.++..++++++|.++|+.+++. ++....+...+|..|+..++++-|+.+|++.+++-
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG------- 354 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG------- 354 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-------
Confidence 777888999999999999999999999986 45556677788999999999999999999999863
Q ss_pred CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124 180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259 (394)
Q Consensus 180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 259 (394)
..++. .+.|+|.+....++++-++..|++++.... +....+.+|+|+|.+....|++.-|...|+-++.
T Consensus 355 ~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--- 423 (478)
T KOG1129|consen 355 AQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--- 423 (478)
T ss_pred CCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc---
Confidence 33333 458999999999999999999999998753 3445788999999999999999999999998886
Q ss_pred hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
.++....++.+||.+-.+.|+.++|..++..|....
T Consensus 424 -----~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 424 -----SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred -----cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 567888999999999999999999999999886644
No 48
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.82 E-value=1.6e-16 Score=134.84 Aligned_cols=339 Identities=13% Similarity=0.003 Sum_probs=231.9
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
+|+.+..+..+|.++...|+++.+...+.++...... ...........+..+...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD---- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence 6788889999999999999999998888887776432 1223344556788899999999999999999876
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
.|....++.. +..+...|++..+.....+++.. ..+.+|........+|.++...|++++|+..+++++++
T Consensus 73 ----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 73 ----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred ----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2333344443 55666666666665555555543 23456777778889999999999999999999999996
Q ss_pred HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124 172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 251 (394)
. |+. ..++..+|.++...|++++|+.++++++..... ........+..++.++...|++++|+..+
T Consensus 144 ~-------p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 144 N-------PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred C-------CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 232 345578999999999999999999999875321 11223446678999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHH--HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc
Q 016124 252 RICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 329 (394)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 329 (394)
++++... +..+....... .+...+...|....+..+ +.+........ +.+. ....-...+.++...|+.+
T Consensus 210 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 210 DTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHG-LAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cccc-chHHHHHHHHHHhcCCCHH
Confidence 9985421 11111111101 222333444544433333 22222221111 1111 1122235777888889888
Q ss_pred hHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHh
Q 016124 330 TKLLELLKRVLRIQEREF-GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 391 (394)
Q Consensus 330 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 391 (394)
+|...++.......... ..............+.++...|++++|.+.+.+++.+...++.|
T Consensus 282 -~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 282 -ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred -HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 89998888776654410 01123345666778889999999999999999999999887754
No 49
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=6.5e-18 Score=155.07 Aligned_cols=306 Identities=11% Similarity=0.041 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH-------------------------------HHHHHHHHHH
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------------------------------LLVTSLLGMA 65 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~~l~ 65 (394)
.+|+.+...|...|++++|+..|+++..... .++.. ....+++.+.
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 4577888888888999999999988764210 00000 0112345667
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016124 66 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 145 (394)
Q Consensus 66 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 145 (394)
..|.+.|++++|...|++.. +....+|+.+...|...|++++|...|.+.... + -.|+ ..++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~ 328 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTF 328 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHH
Confidence 78888888888888887531 123456778888888888888888888876542 1 1111 2355
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH---------------
Q 016124 146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE--------------- 210 (394)
Q Consensus 146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------------- 210 (394)
..+...+...|++++|...+..+++.- ..++ ..+++.+...|.+.|++++|...|+
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g-----~~~d----~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTG-----FPLD----IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhC-----CCCC----eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 566666666666666666666655431 1111 1122444555555555555555554
Q ss_pred ----------------HHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 016124 211 ----------------ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 274 (394)
Q Consensus 211 ----------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (394)
+.... | -.|+ ..++..+...+...|..++|.++|+...+.. +..| ....+.
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p-~~~~y~ 466 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKP-RAMHYA 466 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCC-CccchH
Confidence 43321 0 1111 2233344444444444444444444433210 0111 122344
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHH
Q 016124 275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEV 354 (394)
Q Consensus 275 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~ 354 (394)
.+...+.+.|++++|.+.+++. +..|. ..+|..|...+...|+.+ .|...+++.+++ .|..
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~--------~p~~ 527 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLE-LGRLAAEKLYGM--------GPEK 527 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcH-HHHHHHHHHhCC--------CCCC
Confidence 5555555555555555554331 11222 234666666666666666 666665555432 2333
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124 355 MLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 384 (394)
Q Consensus 355 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 384 (394)
...+..++.+|...|++++|.++++.+.+.
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 456778888999999999999998877644
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.4e-17 Score=132.67 Aligned_cols=267 Identities=17% Similarity=0.134 Sum_probs=210.8
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC--cHHHHHHHHHHHHHHHHHhhCCCch
Q 016124 62 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDG 139 (394)
Q Consensus 62 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 139 (394)
.+.+..+.+.|+++.|++.+.- +++ .++.....+-.+|..+++.+| ++.+|..+...++.+ +.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv----~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dr 487 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKV----FEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DR 487 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHH----HHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cc
Confidence 3456667888999988876542 221 234444556677777777644 788899998888875 33
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
..+.++.+-|.+-+..|++++|.+.|++++. +......+++++|..+..+|+.++|+++|-+...+..
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~----------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~-- 555 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALN----------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-- 555 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHc----------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--
Confidence 4456788899999999999999999999986 2334467789999999999999999999998877753
Q ss_pred hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
..+.++..++.+|..+.+..+|++++.++..+ .|.....+..||.+|-+.|+-.+|..++-...+.
T Consensus 556 ------nn~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 556 ------NNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred ------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 34678899999999999999999999988763 3455567889999999999999999998877765
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHH
Q 016124 300 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK 379 (394)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 379 (394)
+ |....+..+|+..|....-++ +|+.+|+++--+ .|........++.|+.+.|+|.+|.++|+
T Consensus 622 f--------p~nie~iewl~ayyidtqf~e-kai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 622 F--------PCNIETIEWLAAYYIDTQFSE-KAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred c--------CcchHHHHHHHHHHHhhHHHH-HHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4 555667778998888887677 999999998643 35566667788999999999999999998
Q ss_pred HHHHHHH
Q 016124 380 RLSNLRM 386 (394)
Q Consensus 380 ~a~~~~~ 386 (394)
..-...+
T Consensus 685 ~~hrkfp 691 (840)
T KOG2003|consen 685 DIHRKFP 691 (840)
T ss_pred HHHHhCc
Confidence 8655443
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=4.1e-17 Score=130.26 Aligned_cols=204 Identities=16% Similarity=0.108 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
+.....+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|...+++++...
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 95 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---- 95 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 455778899999999999999999999999875 35566788899999999999999999999999862
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
|.....+.++|.++...|++++|+..+++++... ..+.....+.++|.++...|++++|...+.+++.
T Consensus 96 ----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 96 ----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334578889999999999999999999998742 1122234567899999999999999999999987
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 294 (394)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (394)
. .|.....+..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+.+
T Consensus 164 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 I--------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred h--------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5 2334567889999999999999999999999884 13345566678899999999999998877
Q ss_pred HHHH
Q 016124 295 EALY 298 (394)
Q Consensus 295 ~a~~ 298 (394)
....
T Consensus 228 ~~~~ 231 (234)
T TIGR02521 228 QLQK 231 (234)
T ss_pred HHHh
Confidence 6544
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=3.7e-17 Score=130.51 Aligned_cols=206 Identities=16% Similarity=0.130 Sum_probs=169.0
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
+.+..+..+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 94 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--- 94 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 34456788899999999999999999999999875 2344567888999999999999999999999886
Q ss_pred hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
.|.....+..+|.++...|++++|+..+.+++... ..+.....+..+|.++...|++++|...+.+++.
T Consensus 95 -----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 -----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred -----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445678899999999999999999999998641 2334455678899999999999999999999988
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 250 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 250 (394)
.. ++. ...+..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+
T Consensus 164 ~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 164 ID-------PQR---PESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred hC-------cCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 53 222 234578999999999999999999998875 122345556788999999999999988
Q ss_pred HHHHHH
Q 016124 251 LRICLD 256 (394)
Q Consensus 251 ~~~a~~ 256 (394)
.+....
T Consensus 226 ~~~~~~ 231 (234)
T TIGR02521 226 GAQLQK 231 (234)
T ss_pred HHHHHh
Confidence 776654
No 53
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=2.2e-16 Score=137.10 Aligned_cols=333 Identities=19% Similarity=0.165 Sum_probs=233.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124 7 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 86 (394)
Q Consensus 7 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 86 (394)
.+-..+|....+|..||.+|..+|+.+++...+-.|-.+ .+.++ ..|..++.....+|++.+|.-+|.+|++
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 334457778889999999999999999999988777654 23332 5688889999999999999999999998
Q ss_pred HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHCCCHHHHHHHH
Q 016124 87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELY 165 (394)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~ 165 (394)
. .|.........+.+|.++|+...|...|.+.+.... +.+.. ........+..+...++-+.|++.+
T Consensus 236 ~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 236 A--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP----PVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred c--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7 455677888899999999999999999999988742 11112 2233345577777788788888888
Q ss_pred HHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------------H--------
Q 016124 166 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL----------------------I-------- 215 (394)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------------~-------- 215 (394)
+.++...... ...+ .+..++.++.....++.|......-.. +
T Consensus 304 e~~~s~~~~~-~~~e-------d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 304 EGALSKEKDE-ASLE-------DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHhhcccc-cccc-------HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 8887732211 0111 113344555555555555444332221 0
Q ss_pred --------------------------HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016124 216 --------------------------TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 269 (394)
Q Consensus 216 --------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 269 (394)
..........+....+..++..+...|++.+|+.++..... ......
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-------~~~~~~ 448 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-------REGYQN 448 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-------Cccccc
Confidence 00000001223456678899999999999999999988766 233345
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH-HhhcC
Q 016124 270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ-EREFG 348 (394)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~-~~~~~ 348 (394)
...|..+|.||..+|.+++|+.+|++++... |....+...|+.++..+|+.+ +|.+.+.+...-- ...-+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------p~~~D~Ri~Lasl~~~~g~~E-kalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA--------PDNLDARITLASLYQQLGNHE-KALETLEQIINPDGRNAEA 519 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCchhhhhhHHHHHHhcCCHH-HHHHHHhcccCCCccchhh
Confidence 7789999999999999999999999999855 455567889999999999999 8888777643100 00001
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 349 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 349 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
...+...........++...|+.++=+..-...+.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11234456678888999999999885554444443
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=2.8e-17 Score=133.99 Aligned_cols=213 Identities=13% Similarity=0.103 Sum_probs=156.9
Q ss_pred ccccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124 5 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 84 (394)
Q Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 84 (394)
+.....+++..+..++.+|.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+..|+++
T Consensus 53 l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 53 LASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred HccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33334455667888999999999999999999999999986 2445678999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHH
Q 016124 85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 164 (394)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 164 (394)
+++ .|....++.++|.++...|++++|+..+++++.. .++++.. ..+ ..+....+++++|+..
T Consensus 125 l~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 125 LEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKEN 187 (296)
T ss_pred HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHH
Confidence 987 5667788999999999999999999999999986 3344421 111 2234567899999999
Q ss_pred HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccH
Q 016124 165 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 244 (394)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 244 (394)
+.++.... .++. . ..+.+....|+..++ ..+..+.+..+... ...|....+++++|.++...|++
T Consensus 188 l~~~~~~~------~~~~--~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 188 LKQRYEKL------DKEQ--W-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred HHHHHhhC------Cccc--c-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHCCCH
Confidence 98866421 1111 1 134455567776554 23433332111000 01244567899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 016124 245 VEAERLLRICLDI 257 (394)
Q Consensus 245 ~~A~~~~~~a~~~ 257 (394)
++|+.+|++++.+
T Consensus 253 ~~A~~~~~~Al~~ 265 (296)
T PRK11189 253 DEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999983
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=6e-17 Score=118.79 Aligned_cols=201 Identities=20% Similarity=0.196 Sum_probs=168.4
Q ss_pred chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124 98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 177 (394)
Q Consensus 98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 177 (394)
....+...||.-|+..|++..|...++++++. +|....++..++.+|...|+.+.|.+.|++|+.+..+.
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-- 102 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-- 102 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--
Confidence 45667888999999999999999999999987 67777889999999999999999999999999975432
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
..+++|.|..++.+|++++|...|++|+.. +..+....++.|+|.|..+.|+++.|..+|++++++
T Consensus 103 --------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 103 --------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred --------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 556799999999999999999999999863 456677889999999999999999999999999984
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124 258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 337 (394)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~ 337 (394)
+|........++..+...|++..|..++++..... +..+.++.....+-...|+.. .+..+-.
T Consensus 169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~-~a~~Y~~ 231 (250)
T COG3063 169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRA-AAQRYQA 231 (250)
T ss_pred --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHH-HHHHHHH
Confidence 46666777889999999999999999988765422 345666766677777888866 5554444
Q ss_pred HH
Q 016124 338 RV 339 (394)
Q Consensus 338 ~a 339 (394)
+.
T Consensus 232 qL 233 (250)
T COG3063 232 QL 233 (250)
T ss_pred HH
Confidence 33
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=6.1e-16 Score=119.06 Aligned_cols=275 Identities=14% Similarity=0.146 Sum_probs=212.2
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124 64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 143 (394)
Q Consensus 64 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 143 (394)
.|.-+.-..+.++|+..|...++. +|....+...||.++...|..+.|+..-+..++.- +-.......
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHHH
Confidence 355566678899999999988874 67788999999999999999999999877665421 111223556
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 223 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 223 (394)
++..||.-|+..|-++.|+..|....+. +.....++..|..+|....+|++|++..++...+..+ +.
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de----------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~ 175 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE----------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TY 175 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc----------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cc
Confidence 8899999999999999999999987652 3333456678999999999999999998877665322 23
Q ss_pred CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124 224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303 (394)
Q Consensus 224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 303 (394)
....+..+..++..+....+.+.|...+.++++ .+|...++-..+|.+....|++..|++.++.+++
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq--------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e----- 242 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ--------ADKKCVRASIILGRVELAKGDYQKAVEALERVLE----- 242 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--------hCccceehhhhhhHHHHhccchHHHHHHHHHHHH-----
Confidence 456778888999999999999999999999998 3566777888999999999999999999998877
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 304 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
.++..+..++..|..+|...|+.+ +...++.++.+.... ......++..-....-.+.|..+..+-+.
T Consensus 243 --Qn~~yl~evl~~L~~~Y~~lg~~~-~~~~fL~~~~~~~~g---------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 243 --QNPEYLSEVLEMLYECYAQLGKPA-EGLNFLRRAMETNTG---------ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred --hChHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHccCC---------ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 455566788889999999999999 999999998875321 12233445555555556666666665555
Q ss_pred HHHHH
Q 016124 384 LRMKY 388 (394)
Q Consensus 384 ~~~~~ 388 (394)
-.|..
T Consensus 311 r~Pt~ 315 (389)
T COG2956 311 RKPTM 315 (389)
T ss_pred hCCcH
Confidence 44443
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=2.3e-16 Score=128.68 Aligned_cols=227 Identities=14% Similarity=0.026 Sum_probs=165.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124 29 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 108 (394)
Q Consensus 29 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 108 (394)
.+..+.++..+.+++... ..+++..+..++.+|.++...|++++|+..|++++++ .|....+++.+|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~ 106 (296)
T PRK11189 39 TLQQEVILARLNQILASR----DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGI 106 (296)
T ss_pred chHHHHHHHHHHHHHccc----cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Confidence 455677777777777532 1233456788999999999999999999999999986 5667889999999
Q ss_pred HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124 109 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 188 (394)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (394)
++...|++++|+..|++++++ +|....++.++|.++...|++++|+..++++++.. |+++.. ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-------P~~~~~-~~ 170 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-------PNDPYR-AL 170 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHH-HH
Confidence 999999999999999999987 45556688999999999999999999999999853 333321 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124 189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 268 (394)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 268 (394)
...+....+++++|+..+.++.... ++.. + ..+.++...|+..++ ..++.+.+...... ...+.
T Consensus 171 ---~~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~ 234 (296)
T PRK11189 171 ---WLYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAER 234 (296)
T ss_pred ---HHHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHH
Confidence 1223456788999999997765321 1111 1 124445556666544 24444433211100 01234
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 269 ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
...++.++|.++...|++++|+.+|+++++.
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999974
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.1e-16 Score=125.50 Aligned_cols=277 Identities=15% Similarity=0.151 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
|.....+..+|.+++..|++.+|+..|+++..+ +|......-..|.++...|++++-..+-...+.+.+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--- 297 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--- 297 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence 445667888999999999999999999998775 677778888889999999999988777766665521
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
....-++.-+...+..+++..|+.+-+++++.-.+. ...+...|..+...|+.++|+-.|+.|..
T Consensus 298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~----------~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN----------HEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc----------chHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 222334555677788899999999999999854321 34456789999999999999999999887
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH-HHHH-hhcChHHHHHH
Q 016124 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG-ITLY-HLNRDKEAEKL 292 (394)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~ 292 (394)
+ .|....+|..|..+|...|++.+|.-....++..+ +..+.++..+| .++. .-.--++|.++
T Consensus 363 L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 363 L--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred c--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHH
Confidence 5 35677889999999999999999999888887754 33455666664 3333 33345789999
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCch
Q 016124 293 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE 372 (394)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 372 (394)
+++++.+. |....+-..++.++...|.++ .++.++++.+..+.. ...+..||.++...+.+.
T Consensus 427 ~ek~L~~~--------P~Y~~AV~~~AEL~~~Eg~~~-D~i~LLe~~L~~~~D---------~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 427 AEKSLKIN--------PIYTPAVNLIAELCQVEGPTK-DIIKLLEKHLIIFPD---------VNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred HHhhhccC--------CccHHHHHHHHHHHHhhCccc-hHHHHHHHHHhhccc---------cHHHHHHHHHHHHhhhHH
Confidence 99988754 666777888999999999999 999999999876422 346788999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHh
Q 016124 373 EKFPLKKRLSNLRMKYKQK 391 (394)
Q Consensus 373 ~A~~~~~~a~~~~~~~~~~ 391 (394)
+|++.|..|+.+.++.+..
T Consensus 489 ~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHhcCccchHH
Confidence 9999999999988876544
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.79 E-value=2.8e-15 Score=117.30 Aligned_cols=309 Identities=16% Similarity=0.100 Sum_probs=237.1
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC-
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES- 96 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 96 (394)
.+-.+..+...+|.|++++.+--..++..... .+......++.+++..+....++.+++.+-+..+.+- +...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~ 118 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAG 118 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcc
Confidence 34455667788899999888776666665543 3445677889999999999999999998887776541 2111
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
..-......+|..+..++.++++++.|+.|+.+.... .|......++..+|..|....++++|..+..+|.++.....
T Consensus 119 ~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 119 QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 2234566678999999999999999999999987654 22233456788999999999999999999999999988753
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
..+-+......+++.++..+..+|+.-.|.++.+++.++.-... +.+..+.++..+|.+|...|+.+.|..-|+++..
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23333444556778899999999999999999999999887665 5667788889999999999999999999999998
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHH-----HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 331 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 331 (394)
+.... .+......++...+.++....-..+ |++.-++++++..++ .....+......++.+|..+|..+ +
T Consensus 275 ~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I--G~K~~vlK~hcrla~iYrs~gl~d-~ 349 (518)
T KOG1941|consen 275 TMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI--GAKLSVLKLHCRLASIYRSKGLQD-E 349 (518)
T ss_pred HHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccchh-H
Confidence 77665 3344455667777777766544444 999999999998776 333456777889999999998776 5
Q ss_pred HHHHHHHHHH
Q 016124 332 LLELLKRVLR 341 (394)
Q Consensus 332 A~~~~~~al~ 341 (394)
-.+.+.++-+
T Consensus 350 ~~~h~~ra~~ 359 (518)
T KOG1941|consen 350 LRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=2.1e-15 Score=128.56 Aligned_cols=302 Identities=12% Similarity=0.079 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
.....-|......|++++|.+...++-+. .+.|.. .+...+......|+++.|..++.++.+. .
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~--------~ 148 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAEL--------A 148 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 33456677777789999988666654332 122322 2344466669999999999999999764 2
Q ss_pred cch-HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 97 ADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 97 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
|+. .......+.++...|++++|...+++..+. .|....++..++.+|...|++++|+..+.+..+...
T Consensus 149 ~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-- 218 (398)
T PRK10747 149 DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-- 218 (398)
T ss_pred CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC--
Confidence 222 222334489999999999999999998875 344456778889999999999999999998876431
Q ss_pred ccCCCchHHHH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124 176 NYMSLDDSIME----NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251 (394)
Q Consensus 176 ~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 251 (394)
.++.... .++..+........+ .+.+.+..+... ...+........++..+...|+.++|...+
T Consensus 219 ----~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp----~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 219 ----GDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQS----RKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCC----HHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1222222 122222222222222 222332222211 123445667788999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124 252 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 331 (394)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 331 (394)
+++++. +.++. .....+ ....++.+++++.+++.++ .+|+....+..+|.++...+++. +
T Consensus 287 ~~~l~~------~~~~~---l~~l~~--~l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~-~ 346 (398)
T PRK10747 287 LDGLKR------QYDER---LVLLIP--RLKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQ-E 346 (398)
T ss_pred HHHHhc------CCCHH---HHHHHh--hccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHH-H
Confidence 988872 22222 112222 2345899999988888775 33555667889999999999999 9
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124 332 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 385 (394)
Q Consensus 332 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 385 (394)
|.++|+++++. .|+. ..+..++.++...|+.++|..+|++++.+.
T Consensus 347 A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 347 ASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999974 2332 335679999999999999999999998765
No 61
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.78 E-value=4.2e-15 Score=141.68 Aligned_cols=312 Identities=11% Similarity=0.031 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 94 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 94 (394)
.......+|.++...|++++|..++++++.... ..+......+...+|.++...|++++|...+++++.......
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-- 525 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-- 525 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--
Confidence 344556678889999999999999999987521 112223455677899999999999999999999999877643
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
+......++..+|.++...|++++|...+.+++...........+.....+..+|.++...|++++|...+.+++.+...
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 22234557788999999999999999999999999877543333444455677899999999999999999999998764
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH-HHHHHHHHHcccHHHHHHHHHH
Q 016124 175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRI 253 (394)
Q Consensus 175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~ 253 (394)
. + +.....++..++.++...|++++|...+.++..+..... .+....... ......+...|+.+.|...+..
T Consensus 606 ~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 678 (903)
T PRK04841 606 Y---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--YHSDWIANADKVRLIYWQMTGDKEAAANWLRQ 678 (903)
T ss_pred c---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 2 1 222345667899999999999999999999988754321 111111111 1122445567899998888665
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHH
Q 016124 254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 333 (394)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~ 333 (394)
.... .. ............++.++...|++++|...+++++...... ......+.++..+|.++...|+.+ +|.
T Consensus 679 ~~~~---~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~~~~~a~~~~~la~a~~~~G~~~-~A~ 751 (903)
T PRK04841 679 APKP---EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RLMSDLNRNLILLNQLYWQQGRKS-EAQ 751 (903)
T ss_pred cCCC---CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHcCCHH-HHH
Confidence 4321 00 0111122234678999999999999999999999986553 234566778889999999999999 999
Q ss_pred HHHHHHHHHHHh
Q 016124 334 ELLKRVLRIQER 345 (394)
Q Consensus 334 ~~~~~al~~~~~ 345 (394)
..+.+++++...
T Consensus 752 ~~L~~Al~la~~ 763 (903)
T PRK04841 752 RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHhCc
Confidence 999999998754
No 62
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=7.5e-17 Score=148.11 Aligned_cols=298 Identities=13% Similarity=0.083 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC-
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE- 95 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 95 (394)
.+++.+...|...|++++|...|++..+ | ...+++.+...|...|++++|+.+|++.+... ..++
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~~ 224 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----------R-NLASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEP 224 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC----------C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCCh
Confidence 4466777788888888888888776532 1 13457888899999999999999999876431 0000
Q ss_pred ------------------------------CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016124 96 ------------------------------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 145 (394)
Q Consensus 96 ------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 145 (394)
-.....+++.+...|.+.|++++|...|++.. +....+|
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~ 293 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTTVAW 293 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCChhHH
Confidence 01122345677888999999999998887642 1134578
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124 146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 225 (394)
Q Consensus 146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 225 (394)
+.+...|...|++++|+.+|++..+.- ..++. .++..+...+...|++++|...+...++. ..+
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g-----~~pd~----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~ 357 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSG-----VSIDQ----FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFP 357 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCH----HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCC
Confidence 899999999999999999999876531 22332 24677888999999999999999887653 122
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC
Q 016124 226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 305 (394)
Q Consensus 226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 305 (394)
....++..+...|.+.|++++|...|++..+ + ...+|..+...|...|+.++|++.|++....-
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g----- 421 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG----- 421 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 2334567788888888888888888876532 1 23467777888888888888888887765421
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124 306 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 380 (394)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 380 (394)
-.|+ ..++..+...+.+.|..+ +|.++|+...+.. + ..| ....+..+..+|.+.|+.++|.+++++
T Consensus 422 -~~Pd-~~T~~~ll~a~~~~g~~~-~a~~~f~~m~~~~----g-~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 422 -VAPN-HVTFLAVLSACRYSGLSE-QGWEIFQSMSENH----R-IKP-RAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred -CCCC-HHHHHHHHHHHhcCCcHH-HHHHHHHHHHHhc----C-CCC-CccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 1122 334556666666666666 6666666554321 0 011 123344555555555555555555443
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.2e-15 Score=138.55 Aligned_cols=330 Identities=12% Similarity=0.005 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
...+..+|..+...|++++|+..|+++++.. ++. ..++..++..+...++.++|+..++++...
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~d-----P~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-------- 165 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKD-----PTN---PDLISGMIMTQADAGRGGVVLKQATELAER-------- 165 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhccc--------
Confidence 3344455778888888888888888887752 222 344456677777778888887777776554
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh------------------------------------------
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV------------------------------------------ 133 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------------ 133 (394)
.|.... +..++.++...++..+|+..++++++.....
T Consensus 166 dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 166 DPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred CcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 222222 2334445544566656777777766542110
Q ss_pred ---------------------------------h------CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 134 ---------------------------------Y------GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 134 ---------------------------------~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
. ++.++....+....-.++...|++.+++..|+....
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~---- 320 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA---- 320 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----
Confidence 0 000001111111222233334444444444444322
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124 175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 254 (394)
Q Consensus 175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 254 (394)
.+..-|.. +....|..|...+++++|+.+|.+++.-..... ..+........|-..|...+++++|..++++.
T Consensus 321 ---~~~~~P~y--~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 321 ---EGYKMPDY--ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred ---cCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 11111222 335678889999999999999988765321100 11223333457788899999999999999988
Q ss_pred HHHHH-hh--c----CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 016124 255 LDIMT-KT--V----GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 327 (394)
Q Consensus 255 ~~~~~-~~--~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (394)
.+... .. . ...+|+.......++.++...|++.+|.+.+++.+... |........+|.++...|.
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDL 465 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence 76211 00 1 13456777888889999999999999999999987654 5555678899999999999
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124 328 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 390 (394)
Q Consensus 328 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 390 (394)
+. +|...++.++.+ +|+...+...++.++..+|++.+|......+++..++...
T Consensus 466 p~-~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 466 PR-KAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HH-HHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 99 999999777653 4666778889999999999999999999888877666554
No 64
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.5e-15 Score=121.60 Aligned_cols=242 Identities=14% Similarity=0.068 Sum_probs=191.6
Q ss_pred hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124 102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 181 (394)
Q Consensus 102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 181 (394)
..-.+|.......++..|+..|..++++. .....+.+.+.+|...|.+.+.+....++++..... ..+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~---rad 293 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL---RAD 293 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH---HHH
Confidence 34568888889999999999999999873 334457889999999999999999999988765432 123
Q ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--hh----------------CCCCccHHHHHHHHHHHHHHccc
Q 016124 182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK--YK----------------GKEHPSFVTHLLNLAASYSRSKN 243 (394)
Q Consensus 182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~g~ 243 (394)
...++.+...+|..|...++++.|+.+|++++...+. .. ....|..+.-...-|..++..|+
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence 3445666677888999999999999999998765432 00 01234445555566899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 016124 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT 323 (394)
Q Consensus 244 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (394)
|..|+..|.+++. ..|.....+.+.|.||...|.+..|+...+.+++. +|.....+..-|.++.
T Consensus 374 y~~Av~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 374 YPEAVKHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHH
Confidence 9999999999887 35888999999999999999999999999998875 4778889999999999
Q ss_pred HhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124 324 RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 380 (394)
Q Consensus 324 ~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 380 (394)
.+.+++ +|++.|+++++. +|....+...+.+++..+.......+..++
T Consensus 438 ~mk~yd-kAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 438 AMKEYD-KALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHH-HHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999 999999999974 467777777888888765444445555554
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.76 E-value=1.2e-14 Score=124.53 Aligned_cols=331 Identities=18% Similarity=0.132 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh-----------chhHHHHHHH
Q 016124 14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----------RAKKAVEIYH 82 (394)
Q Consensus 14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~ 82 (394)
+....+..-..+....+.+++++.+..+++..+... .......++..+|.+|..+- ...+++..++
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 333444444456678899999999999999976332 23345566777777775432 2345555555
Q ss_pred HHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHH
Q 016124 83 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162 (394)
Q Consensus 83 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 162 (394)
++++. ++....+.+.++.-|..+++.+.|..+.++++++. ....+.++..++.++...+++.+|+
T Consensus 469 ~av~~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 469 EAVQF--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHhc--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHH
Confidence 55554 23344778899999999999999999999999872 3344568899999999999999999
Q ss_pred HHHHHHHHHHHhccc-----------CCCchHHHHHHHHHH----------------------HHHHHHcCChHHHHHHH
Q 016124 163 ELYKKALRVIKDSNY-----------MSLDDSIMENMRIDL----------------------AELLHIVGRGQEGRELL 209 (394)
Q Consensus 163 ~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~~~l----------------------a~~~~~~g~~~~A~~~~ 209 (394)
...+.+++-...+.. +++....+..+...+ +......++..+|....
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 999999886543100 000000000000000 00111122334444444
Q ss_pred HHHHHHHHHhh----------------CCCCcc--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 016124 210 EECLLITEKYK----------------GKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 271 (394)
Q Consensus 210 ~~a~~~~~~~~----------------~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 271 (394)
.++........ +++++. ....+...+..+...++.++|..++.++-.+ .|....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~ 685 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSAS 685 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHH
Confidence 44443332110 011111 1234556688888899999999898888764 467788
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHHHhhcCC
Q 016124 272 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE--LLKRVLRIQEREFGS 349 (394)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~--~~~~al~~~~~~~~~ 349 (394)
.++..|.++..+|++.+|.+.|..|+.+. |+|+ .+...+|.++...|+.. -|.. ++..++++
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ld-----P~hv---~s~~Ala~~lle~G~~~-la~~~~~L~dalr~------- 749 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALALD-----PDHV---PSMTALAELLLELGSPR-LAEKRSLLSDALRL------- 749 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhcC-----CCCc---HHHHHHHHHHHHhCCcc-hHHHHHHHHHHHhh-------
Confidence 89999999999999999999999998854 5655 46789999999999877 7776 88888874
Q ss_pred CCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124 350 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 350 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
+|...++|+.+|.++..+|+.++|.++|..++++.+.
T Consensus 750 -dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 750 -DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred -CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 4666789999999999999999999999999988654
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2.3e-16 Score=130.67 Aligned_cols=266 Identities=15% Similarity=0.173 Sum_probs=196.8
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
+..|..+++.|+..+|.-.|+.++.. +|..+++|..||.+....++-..|+..+++++++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 45789999999999999999999873 5888999999999999999999999999999997 6788
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh--CCC-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--GEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
..++..||..|...|.-.+|..++.+-+....... ... ...... ...-......+..-.++|..+.....
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~--- 425 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLP--- 425 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCC---
Confidence 89999999999999999999999998876521100 000 000000 00000000111222233333333211
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
...+ ..+...||.+|...|+|++|+++|+.|+.. .|.....|+.||-.+....+..+|+..|++|++
T Consensus 426 --~~~D---pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 426 --TKID---PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred --CCCC---hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 1122 234577999999999999999999999984 678888999999999999999999999999999
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHHHHHHHHHhCCCc
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP--VGEALDCLVSIQTRLGEDD 329 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 329 (394)
+ .|..++++++||..+..+|.|++|.++|-.|+.+.+...+..... .-.++..|-.++...++.+
T Consensus 493 L--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 493 L--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred c--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 5 588889999999999999999999999999999987643322211 1234444445555556554
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=8.4e-15 Score=133.07 Aligned_cols=148 Identities=12% Similarity=-0.062 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH---HHcC-
Q 016124 230 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE---IAFG- 305 (394)
Q Consensus 230 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---~~~~- 305 (394)
+....|..|...+++++|+.+|+.++.-.... ...+........|-..+...+++++|..++++..+... ..++
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 44556788888888888888888876521100 01122233345677889999999999999998876211 0011
Q ss_pred ---CCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124 306 ---KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 382 (394)
Q Consensus 306 ---~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 382 (394)
..+|+.......++.++...|+.. +|.+.+++.+.. .|.....+..+|.++...|.+.+|+..++.+.
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~-~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLP-TAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 345666778888999999999999 999999998764 35556778899999999999999999999988
Q ss_pred HHHHHH
Q 016124 383 NLRMKY 388 (394)
Q Consensus 383 ~~~~~~ 388 (394)
.+.+..
T Consensus 478 ~l~P~~ 483 (822)
T PRK14574 478 SLAPRS 483 (822)
T ss_pred hhCCcc
Confidence 876653
No 68
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.74 E-value=2e-14 Score=111.84 Aligned_cols=283 Identities=16% Similarity=0.133 Sum_probs=214.8
Q ss_pred CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124 10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 89 (394)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 89 (394)
+.+|..-.+++..|.+|...|+..-|+.-+.+++++ .|+...+....|.++..+|.+++|+.-|..++..-
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~- 136 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE- 136 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-
Confidence 356777888999999999999999999999999986 36777788889999999999999999999988742
Q ss_pred HhcCCCCcchHh------------hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC
Q 016124 90 LNRGTESADLVL------------PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 157 (394)
Q Consensus 90 ~~~~~~~~~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 157 (394)
++...... .+......+...|++..|+.+....+++ .|..+..+...+.+|...|+
T Consensus 137 ----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 137 ----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred ----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCc
Confidence 11111111 2233344556678999999999998886 56777788889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH---
Q 016124 158 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL--- 234 (394)
Q Consensus 158 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 234 (394)
+..|+.-++.+-++.. ++ ...++.++.+++..|+.+.++...++++++ .++|......|-.+
T Consensus 205 ~k~AI~Dlk~askLs~-------Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQ-------DN---TEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHHHHHhccc-------cc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHH
Confidence 9999999998877643 22 345578999999999999999999999875 23333222222222
Q ss_pred ------HHHHHHcccHHHHHHHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC
Q 016124 235 ------AASYSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 307 (394)
Q Consensus 235 ------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 307 (394)
+.-....++|.++++..++.++. .+. .+........+..|+...|++.+|+....+++.+.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~-----ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d------- 337 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKN-----EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID------- 337 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc-----CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-------
Confidence 23334556677777766666652 111 23344455667889999999999999999988743
Q ss_pred ChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124 308 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 342 (394)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~ 342 (394)
|+.+.++..-+.+|.....++ .|+.-|++|.+.
T Consensus 338 -~~dv~~l~dRAeA~l~dE~YD-~AI~dye~A~e~ 370 (504)
T KOG0624|consen 338 -PDDVQVLCDRAEAYLGDEMYD-DAIHDYEKALEL 370 (504)
T ss_pred -chHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHhc
Confidence 667788999999999999999 999999999875
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.4e-15 Score=117.29 Aligned_cols=270 Identities=14% Similarity=0.082 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124 13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 92 (394)
Q Consensus 13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 92 (394)
|.....+..+|.+++..|++++|+..|+++..+ +|..+..+-..|..+...|+++.-..+-...+.+.+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--- 297 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--- 297 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence 445567788999999999999999999998765 477788888889999999999988877777666532
Q ss_pred CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
....-++.-+...+...++..|+.+-+++++. ++....++..-|..+...|+.++|.-.|+.|..+.
T Consensus 298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 22334555677788899999999999999986 44555678888999999999999999999998864
Q ss_pred HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH-HHHH-HcccHHHHHHH
Q 016124 173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA-ASYS-RSKNFVEAERL 250 (394)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~ 250 (394)
|....+|..+-.+|...|++.+|....+.++... +..+.++..+| .++. .-.--++|..+
T Consensus 365 ----------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 365 ----------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred ----------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHH
Confidence 2336788899999999999999999999888764 33455555564 3332 22334789999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCch
Q 016124 251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 330 (394)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 330 (394)
+++++.+ .|....+...+|.++...|.+.+++.++++.+..+ ++ ......||.++...+.+.
T Consensus 427 ~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-----~D----~~LH~~Lgd~~~A~Ne~Q- 488 (564)
T KOG1174|consen 427 AEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-----PD----VNLHNHLGDIMRAQNEPQ- 488 (564)
T ss_pred HHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-----cc----cHHHHHHHHHHHHhhhHH-
Confidence 9998873 57778888999999999999999999999999865 22 234678999999999999
Q ss_pred HHHHHHHHHHHH
Q 016124 331 KLLELLKRVLRI 342 (394)
Q Consensus 331 ~A~~~~~~al~~ 342 (394)
+|.++|..|+.+
T Consensus 489 ~am~~y~~ALr~ 500 (564)
T KOG1174|consen 489 KAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 70
>PLN03077 Protein ECB2; Provisional
Probab=99.73 E-value=5.4e-15 Score=139.27 Aligned_cols=163 Identities=11% Similarity=0.024 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124 189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 268 (394)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 268 (394)
|+.+...|...|+.++|+.+|++..+. | -.|+ ..++..+...+...|++++|..+|+...+.. +..|
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P- 623 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVES-----G-VNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITP- 623 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCC-
Confidence 445555555666666666665554331 0 1121 1223344445555666666666665554211 1112
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC
Q 016124 269 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 348 (394)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 348 (394)
....+..+..++.+.|++++|.+.+++. +-.|+ ..+|..|-..+...|+.+ .+....++.+++
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m---------~~~pd-~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l------ 686 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM---------PITPD-PAVWGALLNACRIHRHVE-LGELAAQHIFEL------ 686 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCChH-HHHHHHHHHHhh------
Confidence 2244555666666666666666555542 11122 233444444555555555 555544444442
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 349 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 349 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
.|+....+..++.+|...|++++|.+..+...+
T Consensus 687 --~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 687 --DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred --CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 233455677888999999999999888777654
No 71
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=1.1e-14 Score=124.89 Aligned_cols=284 Identities=11% Similarity=0.033 Sum_probs=194.5
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124 13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 92 (394)
Q Consensus 13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 92 (394)
|.....+...|..+..+|+++.|..++.++.+.. ++.. ..+....+.++...|++++|...+++.++.
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~----- 182 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM----- 182 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 3334445677899999999999999999987642 1111 122334588999999999999999988875
Q ss_pred CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
.|....++..++.++...|++++|...+.+..+.. ..++... ........-....+..+++...+.++.+.
T Consensus 183 ---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 183 ---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred ---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45666788899999999999999999998887651 1223222 22222222223334444555566665553
Q ss_pred HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124 172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 251 (394)
..+ ..+.....+..++..+...|++++|...++++++.. ++++..... ..........++.+.+.+.+
T Consensus 255 ~p~------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 255 QPR------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CCH------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHH
Confidence 221 111123455778999999999999999999998752 122211101 11223334457888888888
Q ss_pred HHHHHHHHhhcCCCCCcch--HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc
Q 016124 252 RICLDIMTKTVGPDDQSIS--FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 329 (394)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 329 (394)
+++++ .+|... ..+..+|.++...|++++|.++|+++.... .+|+... +..+|.++.+.|+.+
T Consensus 323 e~~lk--------~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 323 EKQAK--------NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK------EQLDAND-LAMAADAFDQAGDKA 387 (409)
T ss_pred HHHHH--------hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHH
Confidence 88876 345555 777899999999999999999999543322 1233323 558999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 016124 330 TKLLELLKRVLRIQE 344 (394)
Q Consensus 330 ~~A~~~~~~al~~~~ 344 (394)
+|.+++++++...-
T Consensus 388 -~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 388 -EAAAMRQDSLGLML 401 (409)
T ss_pred -HHHHHHHHHHHHHh
Confidence 99999999987543
No 72
>PLN03077 Protein ECB2; Provisional
Probab=99.72 E-value=7.2e-15 Score=138.43 Aligned_cols=302 Identities=14% Similarity=0.067 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch-------------------------------HHHHHHHHHHH
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-------------------------------ILLVTSLLGMA 65 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~l~ 65 (394)
.+|+.+...|...|++++|+..|.++.... ..++. .....+++.+.
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g---~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELS---VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 457778888889999999999888876531 00110 01233556666
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch------
Q 016124 66 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------ 139 (394)
Q Consensus 66 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------ 139 (394)
..|.+.|++++|...|++.. .+ ...+|+.+...|.+.|++++|+..|++..... ..++..
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~----------~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~Pd~~t~~~ll 396 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRME----------TK-DAVSWTAMISGYEKNGLPDKALETYALMEQDN---VSPDEITIASVL 396 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCC----------CC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCCCceeHHHHH
Confidence 77777777777777776532 11 23467777777888888888888877654321 011110
Q ss_pred -------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 016124 140 -------------------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 194 (394)
Q Consensus 140 -------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~ 194 (394)
....+++.+...|.+.|++++|.+.|++..+ ++ ..+|+.+..
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---------~d----~vs~~~mi~ 463 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---------KD----VISWTSIIA 463 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------CC----eeeHHHHHH
Confidence 0112334444455555555555555544211 11 113344555
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH----------------------------------HHHHHHHHHHHH
Q 016124 195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV----------------------------------THLLNLAASYSR 240 (394)
Q Consensus 195 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~----------------------------------~~~~~la~~~~~ 240 (394)
.|...|+.++|+.+|++.... ..|+.. ...+.+...|.+
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~-------~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLT-------LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhC-------CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 556666666666666655321 111111 111233455666
Q ss_pred cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 016124 241 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS 320 (394)
Q Consensus 241 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 320 (394)
.|+.++|...|+.. .....+|..+...|...|+.++|+.+|++..+.. ..|+ ..++..+-.
T Consensus 537 ~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g---~~Pd----~~T~~~ll~ 597 (857)
T PLN03077 537 CGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG---VNPD----EVTFISLLC 597 (857)
T ss_pred cCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC----cccHHHHHH
Confidence 66666666655432 1234567888888999999999999998865421 1122 234666667
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124 321 IQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381 (394)
Q Consensus 321 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 381 (394)
.+.+.|..+ +|..+|+...+.. + -.|+ ...+..+..++.+.|++++|.+++++.
T Consensus 598 a~~~~g~v~-ea~~~f~~M~~~~----g-i~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 598 ACSRSGMVT-QGLEYFHSMEEKY----S-ITPN-LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHhhcChHH-HHHHHHHHHHHHh----C-CCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 788888888 8888888776332 1 1232 366788888999999999999888775
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=9e-14 Score=118.12 Aligned_cols=298 Identities=15% Similarity=0.053 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 94 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 94 (394)
........+..+...|++++|...++++++.. ++++ .++.. +..+...|++..+.....+++.. ..+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~ 108 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDY-----PRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAP 108 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCc
Confidence 34455667888999999999999999998752 2222 33333 55666666666665555555543 234
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
.+|........+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++.....
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 56777788889999999999999999999999987 2333567888999999999999999999999886421
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHH--HHHHHHHHcccHHHHHHHHH
Q 016124 175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL--NLAASYSRSKNFVEAERLLR 252 (394)
Q Consensus 175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~ 252 (394)
++......+..+|.++...|++++|+..+++++... +..+....... .+...+...|....+..+ +
T Consensus 181 ------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~ 248 (355)
T cd05804 181 ------SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-E 248 (355)
T ss_pred ------CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-H
Confidence 223334456789999999999999999999985421 11111111111 222333344433333332 2
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc-CCCChhHHHHHHHHHHHHHHhCCCchH
Q 016124 253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF-GKDSLPVGEALDCLVSIQTRLGEDDTK 331 (394)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~ 331 (394)
.......... +. +.........+.++...|+.++|...++.......... ..............+.++...|++. +
T Consensus 249 ~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~-~ 325 (355)
T cd05804 249 DLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA-T 325 (355)
T ss_pred HHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH-H
Confidence 2222111110 11 22223334678888999999999999998877665410 0112234555667888999999999 9
Q ss_pred HHHHHHHHHHHHHhhcC
Q 016124 332 LLELLKRVLRIQEREFG 348 (394)
Q Consensus 332 A~~~~~~al~~~~~~~~ 348 (394)
|++.+..++.....+-|
T Consensus 326 A~~~L~~al~~a~~~gg 342 (355)
T cd05804 326 ALELLGPVRDDLARIGG 342 (355)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999998876544
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.4e-15 Score=118.73 Aligned_cols=293 Identities=13% Similarity=0.051 Sum_probs=224.7
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
....+.-....|..++...+|..|+..+..|++++ |..+..|.+.+.+++..|+|++|....++.+.+
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~---- 112 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL---- 112 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheec----
Confidence 34456667888999999999999999999999985 344778889999999999999999999888776
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHH--------HHHHHhhCC--CchHHHHHHHHHHHHHHHCCCHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL--------KIYTKVYGE--NDGRVGMAMCSLAHAKCANGNAEEA 161 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A 161 (394)
.+.........+.++...++..+|...++..- ...+.+... ..|....+...-+.++...|++++|
T Consensus 113 ----kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 113 ----KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred ----CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 34455677788888888888888887665221 111111111 1244455566678899999999999
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHHH
Q 016124 162 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAAS 237 (394)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~la~~ 237 (394)
...--..+++.. .-..++...|.++...++.+.|+..+++++.+...... ...+.....+..-|.-
T Consensus 189 ~~ea~~ilkld~----------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 189 QSEAIDILKLDA----------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred HHHHHHHHhccc----------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 987776666422 12445567788999999999999999999986332110 0123445556667888
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 016124 238 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC 317 (394)
Q Consensus 238 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (394)
..+.|++.+|.+.|..++.+-.. +....+..|.+.+.+....|+..+|+.-...++.+- +....++..
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syikall~ 326 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIKALLR 326 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHHHHHH
Confidence 89999999999999999985322 233456788999999999999999999999999864 667888999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124 318 LVSIQTRLGEDDTKLLELLKRVLRIQ 343 (394)
Q Consensus 318 l~~~~~~~g~~~~~A~~~~~~al~~~ 343 (394)
-|.++..+++++ +|++.|+++++.-
T Consensus 327 ra~c~l~le~~e-~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 327 RANCHLALEKWE-EAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence 999999999999 9999999998753
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.4e-15 Score=124.71 Aligned_cols=270 Identities=16% Similarity=0.057 Sum_probs=198.7
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124 63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 142 (394)
Q Consensus 63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 142 (394)
..|..+++.|+..+|.-.|+.++.- +|..+.+|..||.+....++-..|+..+++++++ +|...
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nl 353 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNL 353 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccH
Confidence 4688899999999999999998874 7889999999999999999999999999999987 67777
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc-hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124 143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 221 (394)
Q Consensus 143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 221 (394)
.++..||..|...|.-.+|..++.+=+.....-...... ...... ...-......+..-.++|-.+.. ...
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~---~~~- 425 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAAR---QLP- 425 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHH---hCC-
Confidence 899999999999999999999998876643111000000 000000 00000000001111222222221 111
Q ss_pred CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124 222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301 (394)
Q Consensus 222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 301 (394)
......+...||.+|...|+|++|+.+|+.|+. ..|.....|..||-.+....+.++|+..|++|+++.
T Consensus 426 --~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq- 494 (579)
T KOG1125|consen 426 --TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ- 494 (579)
T ss_pred --CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-
Confidence 113456778899999999999999999999998 468888899999999999999999999999999976
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHHHHhcCchhhh
Q 016124 302 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE--EVMLTLKKVVSYLDKLGRKEEKF 375 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~ 375 (394)
|...++.++||..+..+|.++ +|.++|-.|+.+.++..+.... ..-.+|..|-.++...++.+-+.
T Consensus 495 -------P~yVR~RyNlgIS~mNlG~yk-EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 495 -------PGYVRVRYNLGISCMNLGAYK-EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred -------CCeeeeehhhhhhhhhhhhHH-HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 778889999999999999999 9999999999998774332211 12244555556677777776443
No 76
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-15 Score=119.85 Aligned_cols=294 Identities=13% Similarity=0.036 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124 56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 135 (394)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 135 (394)
..+.-....|..++...+|.+|+..+..|+++ .|+.+..|.+.+.+++..|+|++|....++.+.+
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------ 112 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRL------ 112 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheec------
Confidence 44555667888999999999999999999998 3445788899999999999999999999988876
Q ss_pred CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHH
Q 016124 136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA--------LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 207 (394)
Q Consensus 136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 207 (394)
.+.........+.++...++..+|...++.. +.............|........-+.++...|++++|..
T Consensus 113 --kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 113 --KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred --CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 2333345666777777777777777655421 111111111122235555556677889999999999988
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC----CCCCcchHHHHHHHHHHHhh
Q 016124 208 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG----PDDQSISFPMLHLGITLYHL 283 (394)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~la~~~~~~ 283 (394)
.--..+++ ++....++..-|.++.-.++.+.|+..|++++.+-..... ...+.....+..-|+-.++.
T Consensus 191 ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 191 EAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred HHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 76655553 4566777888899999999999999999999985321110 01133344556678888999
Q ss_pred cChHHHHHHHHHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 016124 284 NRDKEAEKLVLEALYIREIAFGKDS-LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV 362 (394)
Q Consensus 284 g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 362 (394)
|++..|.+.|..++.+. |++ ...+..|.+.+.+..++|+.. +|+.-...++.+ ++....++...|
T Consensus 263 G~y~~A~E~Yteal~id-----P~n~~~naklY~nra~v~~rLgrl~-eaisdc~~Al~i--------D~syikall~ra 328 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNID-----PSNKKTNAKLYGNRALVNIRLGRLR-EAISDCNEALKI--------DSSYIKALLRRA 328 (486)
T ss_pred cchhHHHHHHHHhhcCC-----ccccchhHHHHHHhHhhhcccCCch-hhhhhhhhhhhc--------CHHHHHHHHHHH
Confidence 99999999999999875 333 345778899999999999999 999999999976 577889999999
Q ss_pred HHHHHhcCchhhhhhHHHHHHHHHH
Q 016124 363 SYLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 363 ~~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
.++...++|++|.+.|+++.+....
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999887554
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.3e-13 Score=117.65 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=186.3
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 98 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 98 (394)
+...+......|+++.|..++.++.+.. ++. ... .....+.++...|++++|...+++..+. .|.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~ 185 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELA-----DND-QLP-VEITRVRIQLARNENHAARHGVDKLLEV--------APR 185 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-hHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence 3444666699999999999999997642 111 112 2233488999999999999999998775 566
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM-----AMCSLAHAKCANGNAEEAVELYKKALRVIK 173 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 173 (394)
...++..++.+|...|++++|...+.+..+.. ..++.... ++..+........+ ...+.+..+...
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp 256 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQS 256 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCC
Confidence 67888889999999999999999998877642 11222111 22222221222222 233333332221
Q ss_pred hcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 016124 174 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 253 (394)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 253 (394)
+. .++. ..+...++..+...|+.++|...++++++. +.++..... .+ ....++++++++..++
T Consensus 257 ~~---~~~~---~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l---~~--~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 257 RK---TRHQ---VALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLL---IP--RLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HH---HhCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH---Hh--hccCCChHHHHHHHHH
Confidence 10 1122 334577899999999999999999988762 123322221 22 2345899999999888
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHH
Q 016124 254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 333 (394)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~ 333 (394)
.++ .+|+....+..+|.++...|++++|.++|+++++.. |.. ..+..++.++.+.|+.+ +|.
T Consensus 320 ~lk--------~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~-~A~ 381 (398)
T PRK10747 320 QIK--------QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPE-EAA 381 (398)
T ss_pred HHh--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHH-HHH
Confidence 776 467888888999999999999999999999998853 332 23568999999999999 999
Q ss_pred HHHHHHHHHH
Q 016124 334 ELLKRVLRIQ 343 (394)
Q Consensus 334 ~~~~~al~~~ 343 (394)
.+|++++.+.
T Consensus 382 ~~~~~~l~~~ 391 (398)
T PRK10747 382 AMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhh
Confidence 9999998764
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=1.6e-14 Score=114.80 Aligned_cols=182 Identities=14% Similarity=0.076 Sum_probs=147.4
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
.++..+..++.+|..+...|++++|+..+++++.. .++++....++..+|.++...|++++|+..++++++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-- 100 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-- 100 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--
Confidence 44556778899999999999999999999999876 34556667788999999999999999999999999873
Q ss_pred hcCCCCcchHhhhHhHHHHHHHh--------CcHHHHHHHHHHHHHHHHHhhCCCchHHHH--------------HHHHH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKE--------GKAVDAESVFSRILKIYTKVYGENDGRVGM--------------AMCSL 148 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~~l 148 (394)
++++....+++.+|.++... |++++|+..+++++... ++++.... ....+
T Consensus 101 ---p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 101 ---PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred ---cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666788999999876 88999999999998763 22322211 12467
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
|..+...|++.+|+..++++++.. |+.+....++..+|.++...|++++|..+++....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-------PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999999864 33455567789999999999999999998876543
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=4.1e-14 Score=112.53 Aligned_cols=182 Identities=14% Similarity=0.021 Sum_probs=146.1
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
..+..+..++.+|..+...|++++|+..+++++.. .++++....++..+|.++...|++++|+..++++++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-- 100 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-- 100 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--
Confidence 34566788999999999999999999999999876 34556666788999999999999999999999999864
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCCccHHHH--------------HH
Q 016124 175 SNYMSLDDSIMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVTH--------------LL 232 (394)
Q Consensus 175 ~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~ 232 (394)
|+++....++..+|.++... |++++|+..+++++... ++++....+ ..
T Consensus 101 -----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 101 -----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred -----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHH
Confidence 33344345667888888876 78999999999988652 122222111 23
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 233 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 233 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
.+|.++...|++.+|+..+++++... +++|....++..+|.++...|++++|..+++....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67889999999999999999998853 44577788999999999999999999998876543
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=1e-12 Score=110.79 Aligned_cols=325 Identities=14% Similarity=0.049 Sum_probs=209.9
Q ss_pred CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124 10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 89 (394)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 89 (394)
...|...+++...|..+...|+-++|..+.+.++.. ++....+|..+|.++....+|++|+++|+.|+.+
T Consensus 35 ~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-- 104 (700)
T KOG1156|consen 35 KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-- 104 (700)
T ss_pred HhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--
Confidence 355666666777777777788888887777776652 2334456777888888888888888888888776
Q ss_pred HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124 90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 169 (394)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 169 (394)
.++...++..++.+...+++++.....-.+.++. .|.....|...+..+...|++..|....+...
T Consensus 105 ------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 105 ------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred ------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888887776666666554 45555678888899999999999999888877
Q ss_pred HHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHH
Q 016124 170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 249 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 249 (394)
+..... ..+.......+......+....|.+++|.+.+..--.- ..+........+.++...+++++|..
T Consensus 171 ~t~~~~--~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 171 KTQNTS--PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HhhccC--CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 765421 22222333344455566777777777777665442211 11122234455677777777777777
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH------------------------------------------------
Q 016124 250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLY------------------------------------------------ 281 (394)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~------------------------------------------------ 281 (394)
.+...+.. .|+....+..+-.++.
T Consensus 241 ~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 241 VYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 77665542 1222222111111111
Q ss_pred ---hhc-------------ChHHHHHHHHHHHHHHHHHcCCC------------Ch-hHHHHHHHHHHHHHHhCCCchHH
Q 016124 282 ---HLN-------------RDKEAEKLVLEALYIREIAFGKD------------SL-PVGEALDCLVSIQTRLGEDDTKL 332 (394)
Q Consensus 282 ---~~g-------------~~~~A~~~~~~a~~~~~~~~~~~------------~~-~~~~~~~~l~~~~~~~g~~~~~A 332 (394)
..| +.. -...+++.+.......++. .| ....+++.++.-+...|+++ .|
T Consensus 313 ~~l~Kg~p~vf~dl~SLyk~p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~-~A 390 (700)
T KOG1156|consen 313 PLLSKGVPSVFKDLRSLYKDPE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE-VA 390 (700)
T ss_pred HHhhcCCCchhhhhHHHHhchh-HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH-HH
Confidence 000 011 1113333333333222222 12 23456677899999999999 99
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124 333 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 386 (394)
Q Consensus 333 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 386 (394)
..+...|+. ..|...+.+..-|+++...|..++|..++.++.++..
T Consensus 391 ~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 391 LEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999999884 5688889999999999999999999999999987653
No 81
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=8.9e-13 Score=111.33 Aligned_cols=323 Identities=14% Similarity=0.053 Sum_probs=242.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124 9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 88 (394)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 88 (394)
+-+..+.-..+..-+..+...+.++-|+..|..+++.+ |..-..+...+..-...|..++-..++++++...
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 44455566677788888888888999999999988875 2233445566666667788888888999988763
Q ss_pred HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124 89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 168 (394)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 168 (394)
|.....+...+..+...|+...|...+.++++. +|..-.++..-..+.....+++.|..++.++
T Consensus 581 --------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 581 --------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred --------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 334455666778888889999999999999876 3334445555666778889999999999998
Q ss_pred HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHH
Q 016124 169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 248 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 248 (394)
.... +. ..+++.-+.+...+++.++|+.+++++++. .|.....+..+|.++..+++.+.|.
T Consensus 645 r~~s-------gT----eRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 645 RSIS-------GT----ERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hccC-------Cc----chhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 7642 12 344566677888899999999999999885 4677788899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCC
Q 016124 249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 328 (394)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 328 (394)
..|...+. ..|...-.|..|+.+-...|+.-.|...++++.- .+|.....|.....+-.+.|+.
T Consensus 706 ~aY~~G~k--------~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 706 EAYLQGTK--------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHhccc--------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCH
Confidence 98887765 3466677788899999999999999998888754 3355555666667777888888
Q ss_pred chHHHHHHHHHHHHHHhh--------c--CCC------------CHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124 329 DTKLLELLKRVLRIQERE--------F--GSE------------SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 386 (394)
Q Consensus 329 ~~~A~~~~~~al~~~~~~--------~--~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 386 (394)
+ .|.....+|++-+... . +.. ......++..+|.++....+++.|.++|.+++.+++
T Consensus 770 ~-~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 770 E-QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred H-HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 8 8888888887643221 0 000 011234677789999999999999999999999988
Q ss_pred HHHHh
Q 016124 387 KYKQK 391 (394)
Q Consensus 387 ~~~~~ 391 (394)
.++..
T Consensus 849 d~GD~ 853 (913)
T KOG0495|consen 849 DNGDA 853 (913)
T ss_pred ccchH
Confidence 87653
No 82
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.61 E-value=7.3e-13 Score=107.43 Aligned_cols=229 Identities=15% Similarity=0.069 Sum_probs=162.6
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
.+..+...|.+|...|++++|...|.++.+...+. .+....+..+...+.++... ++++|+.+++++++++...
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--- 107 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--- 107 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc---
Confidence 34455666888889999999999999999988773 34456677788888887666 9999999999999999864
Q ss_pred CCchHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
..+...+.++..+|.+|... |++++|+++|++|+++++... .......++..+|.++...|+|++|++.|++....
T Consensus 108 -G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 108 -GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp -T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56677788999999999999 999999999999999988754 33445678889999999999999999999998774
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124 258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 337 (394)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~ 337 (394)
...... ........+...+.++...|++..|...+++....... -.+..-...+..|...+.. |+.+ .|.
T Consensus 185 ~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~-~D~e-----~f~ 254 (282)
T PF14938_consen 185 CLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEE-GDVE-----AFT 254 (282)
T ss_dssp CCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHT-T-CC-----CHH
T ss_pred hhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHh-CCHH-----HHH
Confidence 322210 11123345567788999999999998888876543211 1122334455556555543 4444 366
Q ss_pred HHHHHHHhh
Q 016124 338 RVLRIQERE 346 (394)
Q Consensus 338 ~al~~~~~~ 346 (394)
.++.-+.++
T Consensus 255 ~av~~~d~~ 263 (282)
T PF14938_consen 255 EAVAEYDSI 263 (282)
T ss_dssp HHCHHHTTS
T ss_pred HHHHHHccc
Confidence 666666554
No 83
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.61 E-value=4.2e-13 Score=108.83 Aligned_cols=192 Identities=17% Similarity=0.137 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
...+..+...|..|...|++++|...|.++.....+.. +....+..+...+.++... ++++|+.+++++++++...
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~- 107 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA- 107 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-
Confidence 35566777788999999999999999999999987743 4455667777777777666 9999999999999998774
Q ss_pred CCCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 213 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 213 (394)
......+.++..+|.+|... |++++|+++|++|+++++.. ..+.....++..+|.++...|+|++|++.|++..
T Consensus 108 -G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 108 -GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp -T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 23456788899999999999 99999999999999999874 3556667888999999999999999999999987
Q ss_pred HHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 214 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
....... .........+...+.+++..|++..|...+++...
T Consensus 183 ~~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 183 KKCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HTCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6421111 01123334566778899999999999988887665
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=9.3e-11 Score=98.23 Aligned_cols=349 Identities=15% Similarity=0.143 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-----------------------HHHhCCchHHHHHHHHHHHHHHHHhh
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVL-----------------------ESRYGKTSILLVTSLLGMAKVLGSIG 72 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g 72 (394)
..++..-|.+++++|+|++|+..|+..+.-. .+..........+.+++.+.++...|
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence 4456678999999999999999999874310 00111111235667889999999999
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCc-------chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016124 73 RAKKAVEIYHRVITILELNRGTESA-------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 145 (394)
Q Consensus 73 ~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 145 (394)
+|.+|++.+++++.++++.+..++. +...+...++.++..+|+.++|...|...+... ..|.+..+.+-
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~ 265 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAV 265 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHh
Confidence 9999999999999888776543222 344567789999999999999999999887652 34666777777
Q ss_pred HHHHHHHHHCCCHHH-HHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124 146 CSLAHAKCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 224 (394)
Q Consensus 146 ~~la~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 224 (394)
+||-.+-....-++. ++..++.......+.....-.+.....++.|.+......+.-+.+.+.... . ....
T Consensus 266 NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~-------l-p~~~ 337 (652)
T KOG2376|consen 266 NNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS-------L-PGMS 337 (652)
T ss_pred cchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-------C-CccC
Confidence 777654433332331 111111111100000000001122233445666666666655555443322 1 2233
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124 225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303 (394)
Q Consensus 225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 303 (394)
|..................+.+|..++...-+ .+|.. ..+...++.+...+|+++.|++.+...+......
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--------~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFAD--------GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 33332222233333333367777777766544 34443 5567778899999999999999998555333222
Q ss_pred cCC--CChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124 304 FGK--DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381 (394)
Q Consensus 304 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 381 (394)
+.. ..|. +-..+-..+.+.++.. .|...+.+|+..+..... ..+.....+..++.+-.+.|+-++|...+++.
T Consensus 410 ~~~~~~~P~---~V~aiv~l~~~~~~~~-~a~~vl~~Ai~~~~~~~t-~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 410 ILEAKHLPG---TVGAIVALYYKIKDND-SASAVLDSAIKWWRKQQT-GSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhccChh---HHHHHHHHHHhccCCc-cHHHHHHHHHHHHHHhcc-cchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 211 2233 2334455667777777 899999999998877543 33566667777888888889999999999999
Q ss_pred HHHHHHHH
Q 016124 382 SNLRMKYK 389 (394)
Q Consensus 382 ~~~~~~~~ 389 (394)
+...+...
T Consensus 485 ~k~n~~d~ 492 (652)
T KOG2376|consen 485 VKFNPNDT 492 (652)
T ss_pred HHhCCchH
Confidence 98665443
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=7.3e-12 Score=107.85 Aligned_cols=288 Identities=17% Similarity=0.164 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
.+.+.++..|..+++.+.|..+.++++++.. ...+.++..++.++...+++.+|+.....+++-....
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N----- 546 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN----- 546 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-----
Confidence 6678899999999999999999999988731 2345678889999999999999999999888765332
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
......-..+-...++.++|+..+...+.+.+...+-... ........-+......++..+|.....++..+....
T Consensus 547 ---~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 547 ---HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred ---hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 1222223334445788899999988888887743211000 011222233334445556677777776665554311
Q ss_pred --------------ccCCCch--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 016124 176 --------------NYMSLDD--SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 239 (394)
Q Consensus 176 --------------~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 239 (394)
...++++ ......+...+..+...+..++|..++.++-.+ .|.....++..|.++.
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLE 695 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHH
Confidence 0012221 223445567788889999999999999988775 4667888999999999
Q ss_pred HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHH--HHHHHHHHHHHHcCCCChhHHHHHHH
Q 016124 240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK--LVLEALYIREIAFGKDSLPVGEALDC 317 (394)
Q Consensus 240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (394)
..|++.+|.+.|..++.+ +|+...+...+|.++...|+..-|.. .+..++++. |....+|+.
T Consensus 696 ~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--------p~n~eaW~~ 759 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--------PLNHEAWYY 759 (799)
T ss_pred HHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--------CCCHHHHHH
Confidence 999999999999999884 45556677899999999999888877 888888753 455568999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHH
Q 016124 318 LVSIQTRLGEDDTKLLELLKRVLRIQE 344 (394)
Q Consensus 318 l~~~~~~~g~~~~~A~~~~~~al~~~~ 344 (394)
+|.++.+.|+.+ +|.++|+-++++-.
T Consensus 760 LG~v~k~~Gd~~-~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 760 LGEVFKKLGDSK-QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHccchH-HHHHHHHHHHhhcc
Confidence 999999999999 99999999998744
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=6e-11 Score=102.50 Aligned_cols=297 Identities=15% Similarity=0.085 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
.+++.....++...|++++|+.++...... -.+....+-..|.++...|++++|...|...+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 455667788889999999999999775443 2355667788899999999999999999998876
Q ss_pred CcchHhhhHhHHHHHHHhC-----cHHHHHHHHHHHHHHHHHhhCC--------Cch----------------HHHHHHH
Q 016124 96 SADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGE--------NDG----------------RVGMAMC 146 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~--------~~~----------------~~~~~~~ 146 (394)
+|+....+..+..+..... +.+.-...|++....+++...+ ... .++....
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~ 147 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS 147 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 5566666666666653322 3444455555443332211000 000 0111223
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC-------CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 147 SLAHAKCANGNAEEAVELYKKALRVIKDSNYM-------SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 147 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
++-.+|....+..-...++............. ...+.....+++.+|..|...|++++|+++.++++..
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---- 223 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---- 223 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence 33333432222222222222222222111111 1234445677889999999999999999999999984
Q ss_pred hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
.|..+..+...|.++...|++.+|...++.+..+ +...-..-...+..+.+.|+.++|...+....+-
T Consensus 224 ----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 224 ----TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred ----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 6788899999999999999999999999988773 2222234456678889999999998877654331
Q ss_pred HHHHcCCCCh---hHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Q 016124 300 REIAFGKDSL---PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 347 (394)
Q Consensus 300 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~ 347 (394)
.. .+..+. .........|.+|.+.|++. .|+..|..+.+++....
T Consensus 292 ~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~-~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 292 DV--DPLSNLNDMQCMWFETECAEAYLRQGDYG-LALKRFHAVLKHFDDFE 339 (517)
T ss_pred CC--CcccCHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHh
Confidence 10 000111 11222345689999999999 99999999998887654
No 87
>PLN02789 farnesyltranstransferase
Probab=99.55 E-value=1.9e-11 Score=99.71 Aligned_cols=221 Identities=13% Similarity=0.034 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHh
Q 016124 13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN 91 (394)
Q Consensus 13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~ 91 (394)
++...++..+-.++...+++++|+..+.+++.+ .|....++...+.++...| ++++++..+.+++..
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---- 101 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---- 101 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----
Confidence 455666666666778889999999999999987 3566778888999999998 689999999999876
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcH--HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 169 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 169 (394)
+|....++...+.++...|+. ++++.++.++++. +|....++...+.++...|++++++.++.+++
T Consensus 102 ----npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 102 ----NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred ----CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 566677889999999888874 6778888888876 56677899999999999999999999999999
Q ss_pred HHHHhcccCCCchHHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH--
Q 016124 170 RVIKDSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-- 240 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 240 (394)
+.... + ..+++..+.+.... |.+ ++++.+..+++.. .|....++..++.++..
T Consensus 170 ~~d~~-------N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~ 231 (320)
T PLN02789 170 EEDVR-------N---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDK 231 (320)
T ss_pred HHCCC-------c---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCC
Confidence 86422 1 34566777776655 333 4677777777764 46666788888888877
Q ss_pred --cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh
Q 016124 241 --SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 283 (394)
Q Consensus 241 --~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 283 (394)
.++..+|.+.+.+++. ..+....++..|+.+|...
T Consensus 232 ~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 232 EALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 3455678877777655 2456667788888888763
No 88
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=2.2e-12 Score=109.07 Aligned_cols=313 Identities=14% Similarity=0.057 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
.++...+..-..-|..++-..++++++..+++ .-..+...+..+...|+...|...+.++.+. +
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pk--------ae~lwlM~ake~w~agdv~~ar~il~~af~~--------~ 614 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPK--------AEILWLMYAKEKWKAGDVPAARVILDQAFEA--------N 614 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc--------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------C
Confidence 34445555555556666666677777665422 1223344455666667777777777776664 3
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
|..-.++..-..+.....+++.|..+|.++... ..+..+++.-+.....+++.++|+.+++++++.+.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp--- 682 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP--- 682 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC---
Confidence 334444544455566666777777777766543 12233455555666666777777777777776542
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
.....+..+|.++..+++.+.|.+.|...+.. -|.....+..|+.+-...|+...|...++++.-
T Consensus 683 -------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 683 -------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred -------chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 12344566777777777777777777665543 244445566667777777777777777766654
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH--------HcCCCC--------------hhHHHH
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI--------AFGKDS--------------LPVGEA 314 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~--------------~~~~~~ 314 (394)
.+|.....|......-.+.|+.+.|.....+|+.-+.. +.-..+ ......
T Consensus 748 --------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV 819 (913)
T KOG0495|consen 748 --------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV 819 (913)
T ss_pred --------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence 34555555555556666667777776666666553210 000000 011234
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 315 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 315 ~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
+..+|.++....+++ +|.+.|.+++.+ .|+..+++..+-..+...|.-++-.+.+.+...-.+.++
T Consensus 820 llaia~lfw~e~k~~-kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIE-KAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 667788888888888 888888888864 456667777777788888887777777777665544443
No 89
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=4.4e-11 Score=97.52 Aligned_cols=211 Identities=13% Similarity=-0.005 Sum_probs=162.2
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC-cHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124 65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGM 143 (394)
Q Consensus 65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 143 (394)
-.++...+.+++|+..+.+++.+ +|....++...+.++..+| ++++++..+.+++.. +|....
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyq 107 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQ 107 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchH
Confidence 33445567889999999999987 6777789999999999998 689999999999876 455566
Q ss_pred HHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124 144 AMCSLAHAKCANGNA--EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 221 (394)
Q Consensus 144 ~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 221 (394)
++...+.++...|+. ++++.++.++++...+. ..++...+.++...|+++++++++.++++.
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN----------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------ 171 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN----------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE------ 171 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------
Confidence 788888888888874 77889999998854322 456788999999999999999999999885
Q ss_pred CCCccHHHHHHHHHHHHHHc---ccH----HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHH
Q 016124 222 KEHPSFVTHLLNLAASYSRS---KNF----VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAE 290 (394)
Q Consensus 222 ~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 290 (394)
++....+++..+.+.... |.+ ++++.+..+++.+ .|....++..++.++.. .++..+|.
T Consensus 172 --d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 172 --DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred --CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 455667888888887665 323 4677777777763 56677788889988887 34556787
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124 291 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 325 (394)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (394)
+.+.+++. ..+....++..|+.++...
T Consensus 242 ~~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 242 SVCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 77777654 2244556788888888763
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=8e-11 Score=92.66 Aligned_cols=322 Identities=14% Similarity=0.102 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH---------
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT--------- 86 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------- 86 (394)
...-..+|.+++..|+|++|+..|.-+.+. .+. ......+++.+++..|.|.+|.....++-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlf 128 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLF 128 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 455678999999999999999999876541 122 234567899999999999999887765421
Q ss_pred -HHHHhcC--------CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC
Q 016124 87 -ILELNRG--------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 157 (394)
Q Consensus 87 -~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 157 (394)
+..+... .+-.+...-...|+.+.+..-.|++|++.|.+.+. ++|.....-..+|.+|.++.-
T Consensus 129 hlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 129 HLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcch
Confidence 1111110 00111223334566677777778888888877764 456666666677888888877
Q ss_pred HHHHHHHHHHHHHHHHhc-------------------------------c----------------c---------CCCc
Q 016124 158 AEEAVELYKKALRVIKDS-------------------------------N----------------Y---------MSLD 181 (394)
Q Consensus 158 ~~~A~~~~~~a~~~~~~~-------------------------------~----------------~---------~~~~ 181 (394)
|+-+.+.+.--++....+ . . .++-
T Consensus 201 ydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 776665544322211000 0 0 0000
Q ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124 182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 261 (394)
Q Consensus 182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 261 (394)
-..+..+..++...|..+++..+|..+.+. -.|.++.-+...|.++...|+-....+.++-+-+.+.-.
T Consensus 281 ~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-----------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 281 MKHIPEARLNLIIYYLNQNDVQEAISLCKD-----------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred HhhChHhhhhheeeecccccHHHHHHHHhh-----------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 011233456677777778888877766543 245555666677888888887777777666665544333
Q ss_pred cCCC-CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124 262 VGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 340 (394)
Q Consensus 262 ~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al 340 (394)
.+.. ..+++.....+|.+++-..++++.+.++...-..+ ..++ ....+++.++...|++. +|.+.|-+.-
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF----~NdD----~Fn~N~AQAk~atgny~-eaEelf~~is 420 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF----TNDD----DFNLNLAQAKLATGNYV-EAEELFIRIS 420 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcc----hhhhHHHHHHHHhcChH-HHHHHHhhhc
Confidence 2211 12334445667777777778888777776544433 1222 23567788888888877 7776665432
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124 341 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 380 (394)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 380 (394)
+++-.+.......||++|...++++-|-+++-+
T Consensus 421 -------~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 421 -------GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred -------ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 223223334455677788777777777665543
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.52 E-value=2.9e-12 Score=113.17 Aligned_cols=214 Identities=12% Similarity=0.103 Sum_probs=154.5
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
++..+.++..||.+|...-+...|..+|++|.++ ++..+.+.-..+..|....+++.|....-.+-+...
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~-- 557 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP-- 557 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch--
Confidence 4556677778888888877888888888888776 244455666677788888888888777433332211
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
.......+..+|..|...+++.+|+..|+.++.. +|....++..+|.+|...|++..|++.|.++..+
T Consensus 558 ----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 558 ----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred ----HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 1112234445888899999999999999999875 6777789999999999999999999999999875
Q ss_pred HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124 172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 251 (394)
. |++ ....+..+.+....|+|.+|+..+...+....... +.....+.++..++..+...|=..+|..++
T Consensus 626 r-------P~s---~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 626 R-------PLS---KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred C-------cHh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 2 332 22346788899999999999999998877654322 122345666777777777777777777777
Q ss_pred HHHHHHH
Q 016124 252 RICLDIM 258 (394)
Q Consensus 252 ~~a~~~~ 258 (394)
+++++.+
T Consensus 695 eksie~f 701 (1238)
T KOG1127|consen 695 EKSIESF 701 (1238)
T ss_pred HHHHHHH
Confidence 7766544
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=9.4e-10 Score=93.38 Aligned_cols=319 Identities=11% Similarity=0.087 Sum_probs=210.4
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
+++...-+|+.+|.++....+|++|+.+|+.|+.+ .++....+..++....++++++-....-.+.++.
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--- 138 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--- 138 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---
Confidence 44555567889999999999999999999999986 2455678899999999999999988888877775
Q ss_pred hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
.|.....|...+..+...|++..|....+...........+.......+......+....|.+++|.+.+..--.
T Consensus 139 -----~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 139 -----RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 455567788899999999999999999888777654322222223344555556677778887777776655322
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc---------
Q 016124 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--------- 241 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------- 241 (394)
-. ..-.......+.++..++++++|...+...+... |+....+..+-.++..-
T Consensus 214 ~i----------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 214 QI----------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred HH----------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 11 1112333567888888899999988887766532 22222111111111000
Q ss_pred -------------------------ccHHHH-----------------------------HHHHHHHHHHHHhhcCCC--
Q 016124 242 -------------------------KNFVEA-----------------------------ERLLRICLDIMTKTVGPD-- 265 (394)
Q Consensus 242 -------------------------g~~~~A-----------------------------~~~~~~a~~~~~~~~~~~-- 265 (394)
.++.+. ..++++.+..+....++.
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 000000 012222222222222211
Q ss_pred ----------C-CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124 266 ----------D-QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 334 (394)
Q Consensus 266 ----------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~ 334 (394)
. ....++++.++.-+...|+++.|..++..|+. ..|.....+..-|.++...|+.+ +|..
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~-eAa~ 426 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLD-EAAA 426 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChH-HHHH
Confidence 1 13456677889999999999999999999876 44778888888999999999999 9999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Q 016124 335 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 380 (394)
Q Consensus 335 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 380 (394)
.+..+.++ +.++.. +-..-|....+.++.++|.+....
T Consensus 427 ~l~ea~el-------D~aDR~-INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 427 WLDEAQEL-------DTADRA-INSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHhc-------cchhHH-HHHHHHHHHHHccccHHHHHHHHH
Confidence 99888764 223221 122445666666777776655443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=1.2e-10 Score=100.57 Aligned_cols=291 Identities=16% Similarity=0.103 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124 59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 138 (394)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 138 (394)
+++.....++...|++++|+.++++.... -.+....+-..|.++..+|++++|...|...++. +
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------N 68 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------N 68 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence 34556678889999999999999775432 4566778888999999999999999999999886 3
Q ss_pred hHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhccc-------CCCchHH--H-------------HHHHHH
Q 016124 139 GRVGMAMCSLAHAKCAN-----GNAEEAVELYKKALRVIKDSNY-------MSLDDSI--M-------------ENMRID 191 (394)
Q Consensus 139 ~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~--~-------------~~~~~~ 191 (394)
|+....+..+..+.... .+.+.-..+|++....+++... ..++... . .....+
T Consensus 69 Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~ 148 (517)
T PF12569_consen 69 PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSN 148 (517)
T ss_pred CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44444555555554222 2345556666655443322100 0000000 0 011122
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhh------C------CCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124 192 LAELLHIVGRGQEGRELLEECLLITEKYK------G------KEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258 (394)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~------~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 258 (394)
+-.+|. +..++.- +.+.+.-..... . ...|. ...+++.++..|-..|++++|+++++++++
T Consensus 149 lk~Ly~---d~~K~~~-i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~-- 222 (517)
T PF12569_consen 149 LKPLYK---DPEKAAI-IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE-- 222 (517)
T ss_pred HHHHHc---ChhHHHH-HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--
Confidence 222222 2222222 222222111111 0 11222 356788999999999999999999999998
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124 259 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 338 (394)
Q Consensus 259 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 338 (394)
..|.....+...|.++.+.|++.+|...++.|..+- ...--.-...+..+.+.|+.+ +|...+..
T Consensus 223 ------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy~LRa~~~e-~A~~~~~~ 287 (517)
T PF12569_consen 223 ------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKYLLRAGRIE-EAEKTASL 287 (517)
T ss_pred ------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHHHHCCCHH-HHHHHHHh
Confidence 468889999999999999999999999999987643 111123345677788889888 88765543
Q ss_pred HHHHHHhhcC-C-CCH---HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124 339 VLRIQEREFG-S-ESE---EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 390 (394)
Q Consensus 339 al~~~~~~~~-~-~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 390 (394)
+.+.-. + .+. .........|.+|.+.|++..|+..|..+......+.+
T Consensus 288 ----Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 288 ----FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred ----hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 322111 0 111 12334456799999999999999999999998887653
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1.1e-09 Score=87.77 Aligned_cols=302 Identities=15% Similarity=0.073 Sum_probs=187.8
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
..-|..-...|+|.+|.....+.-+. .+.-..++..-+..-..+|+++.+-.+..++-+.. ..+.
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-------~~~~ 152 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-------GDDT 152 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-------CCch
Confidence 34455555667788877777664432 22223345556777788888888888888876641 2233
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 179 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 179 (394)
.......+.+....|+++.|..-..++++. .|....++.....+|...|++.+...++.+.-+.- -
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------~ 218 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------L 218 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------C
Confidence 455667788888888888888888888776 33334456667788888888888887777654421 1
Q ss_pred CchHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 180 LDDSIMENMRIDLAE--LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 180 ~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
-+++.... +-+.+. ++...++-..+..+.+---....+. ..+|. ....++.-+...|+.++|.+..+++++.
T Consensus 219 l~~~e~~~-le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 219 LSDEEAAR-LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPE---LVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred CChHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChh---HHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 11122111 122221 1222222222222111110111111 12333 3445677788999999999999998873
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124 258 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 337 (394)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~ 337 (394)
. .++. ....++ ...-+++..=++..++.++. ||+....+..||.++.+.+.+. +|..+++
T Consensus 293 ~------~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~-kA~~~le 352 (400)
T COG3071 293 Q------WDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWG-KASEALE 352 (400)
T ss_pred c------cChh---HHHHHh--hcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHH-HHHHHHH
Confidence 1 1222 111111 23456666666666665552 3444467889999999999999 9999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124 338 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 385 (394)
Q Consensus 338 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 385 (394)
.+++... ....+..+|.++.+.|+..+|.+.+++++.+.
T Consensus 353 aAl~~~~---------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 353 AALKLRP---------SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHhcCC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 8887422 14567889999999999999999999998554
No 95
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.48 E-value=1.1e-12 Score=84.16 Aligned_cols=77 Identities=18% Similarity=0.412 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 89 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 89 (394)
||..+.++..+|.+|...|++++|+.+|++++++ .+..+++++..+.++.++|.++...|++++|+.++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 6899999999999999999999999999999999 6666888888999999999999999999999999999999865
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.46 E-value=3.3e-10 Score=100.56 Aligned_cols=235 Identities=12% Similarity=0.100 Sum_probs=185.3
Q ss_pred hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q 016124 72 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 151 (394)
Q Consensus 72 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 151 (394)
.+...|...+-+++.+ ++..+.++..||.+|....+...|..+|.+|.++ ++..+.+....+..
T Consensus 472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt 535 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT 535 (1238)
T ss_pred hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence 3466777777777765 5678889999999999999999999999999987 55666777889999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124 152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 231 (394)
Q Consensus 152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (394)
|....+++.|......+-+... .......+..+|..|...++...|+..++.++.. +|....++
T Consensus 536 yae~~~we~a~~I~l~~~qka~--------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W 599 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAP--------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLW 599 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhch--------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHH
Confidence 9999999999988544433221 1122233445888999999999999999999874 67778899
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH
Q 016124 232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 311 (394)
Q Consensus 232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 311 (394)
..+|.+|...|++..|++.|.++..+ .|......+..+.+....|++.+|+..+...+.....-. +.....
T Consensus 600 ~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gL 670 (1238)
T KOG1127|consen 600 LGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGL 670 (1238)
T ss_pred HHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhH
Confidence 99999999999999999999998773 466667778889999999999999999998877654321 222345
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC
Q 016124 312 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 348 (394)
Q Consensus 312 ~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 348 (394)
+.++..++..+...|=.. +|..+++++++.+.-...
T Consensus 671 aE~~ir~akd~~~~gf~~-kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQK-KAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 667777777777777666 899999999887765443
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.5e-09 Score=89.94 Aligned_cols=329 Identities=14% Similarity=0.086 Sum_probs=198.4
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH-----------
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL----------- 88 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 88 (394)
+.-+.|.++.+..++|+..++-+ .+.+ ..++...|.++++.|+|++|...|+....-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~--------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGL--------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcc--------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 45566666677777766666511 1111 2245556889999999999999998764310
Q ss_pred ------------HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch-------HHHHHHHHHH
Q 016124 89 ------------ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-------RVGMAMCSLA 149 (394)
Q Consensus 89 ------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la 149 (394)
.+............+++.+.++...|+|.+|++.+++++.++++.+..++. .+..+...++
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 000111122355678899999999999999999999999998877554332 2455678899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHH----HHHHHhhCCCC
Q 016124 150 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GRELLEECL----LITEKYKGKEH 224 (394)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~----~~~~~~~~~~~ 224 (394)
.++..+|+..+|...|...+... ..|.+..+.+-+|+-.+-....-++. ++..++.-. +.....+ .+
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~------~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~ 303 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN------PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SK 303 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc------CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HH
Confidence 99999999999999999988753 45666666666776554433332331 111111100 0000001 11
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124 225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 304 (394)
Q Consensus 225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 304 (394)
...-.++.+.+.+.+..+.-+.+.+.... ..+..|..................+.+|.+++....+
T Consensus 304 ~qk~~i~~N~~lL~l~tnk~~q~r~~~a~--------lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~------ 369 (652)
T KOG2376|consen 304 KQKQAIYRNNALLALFTNKMDQVRELSAS--------LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD------ 369 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHh--------CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc------
Confidence 22333455566665555555554443321 1233443333222333333333356777777666543
Q ss_pred CCCChhH-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124 305 GKDSLPV-GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG--SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381 (394)
Q Consensus 305 ~~~~~~~-~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 381 (394)
.+|.. ..+...++.+....|+++ .|++.+...+......+. ...|..+ ..+-.++...+..+-|...+.++
T Consensus 370 --~~p~~s~~v~L~~aQl~is~gn~~-~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 370 --GHPEKSKVVLLLRAQLKISQGNPE-VALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred --cCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHH
Confidence 33433 556778899999999999 999999855533322221 1234433 33455677788888888888888
Q ss_pred HHHHHH
Q 016124 382 SNLRMK 387 (394)
Q Consensus 382 ~~~~~~ 387 (394)
+....+
T Consensus 444 i~~~~~ 449 (652)
T KOG2376|consen 444 IKWWRK 449 (652)
T ss_pred HHHHHH
Confidence 876654
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=3.7e-11 Score=107.70 Aligned_cols=157 Identities=11% Similarity=0.040 Sum_probs=130.2
Q ss_pred hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHH
Q 016124 113 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 192 (394)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 192 (394)
.+....+...+-++++..+. -+....++.+||.+....|++++|...++.++++. |++ ..+..++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------Pd~---~~a~~~~ 126 (694)
T PRK15179 62 HAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------PDS---SEAFILM 126 (694)
T ss_pred hhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-------CCc---HHHHHHH
Confidence 34444444555555555443 35557789999999999999999999999999864 333 4566889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 016124 193 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP 272 (394)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 272 (394)
+.++.+.+++++|+..+++++.. .|+....+..+|.++...|++++|+..|++++. .+|+...+
T Consensus 127 a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~ 190 (694)
T PRK15179 127 LRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENG 190 (694)
T ss_pred HHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHH
Confidence 99999999999999999999874 678888999999999999999999999999987 46777889
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 273 MLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
+.++|.++...|+.++|...|+++++..
T Consensus 191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 191 YVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998865
No 99
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.44 E-value=8.4e-13 Score=84.63 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124 308 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
||.++.++.++|.++...|+++ +|+++|++++++ .+..|+++|.++.++.++|.++...|++++|++++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~-~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYD-EALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6888999999999999999999 999999999999 66678888899999999999999999999999999999999875
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.43 E-value=9.6e-11 Score=105.11 Aligned_cols=158 Identities=11% Similarity=0.079 Sum_probs=132.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Q 016124 154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 233 (394)
Q Consensus 154 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (394)
..+....+...+-+++...++ .+....++.+||.+....|++++|..+++.++++ .|+...+..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~ 125 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRR-------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFIL 125 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHh-------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence 334444444445555555443 1222567799999999999999999999999986 5788889999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 016124 234 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE 313 (394)
Q Consensus 234 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 313 (394)
++.++.+.+++++|...+++++. ..|+....+..+|.++...|++++|+.+|++++. .+|+...
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~--------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~ 189 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFS--------GGSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFEN 189 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHH
Confidence 99999999999999999999998 4688889999999999999999999999999987 2355667
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124 314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 343 (394)
Q Consensus 314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~ 343 (394)
++..+|.++...|+.+ +|...|+++++..
T Consensus 190 ~~~~~a~~l~~~G~~~-~A~~~~~~a~~~~ 218 (694)
T PRK15179 190 GYVGWAQSLTRRGALW-RARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHHhh
Confidence 8999999999999999 9999999999864
No 101
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.41 E-value=3.9e-11 Score=109.77 Aligned_cols=361 Identities=15% Similarity=0.123 Sum_probs=271.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124 23 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 102 (394)
Q Consensus 23 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 102 (394)
+......+++.+|...=++++++.+...+.++|+....+..++..++......+|+.+-.+++.+.....+..+|..+..
T Consensus 672 ~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~ 751 (1236)
T KOG1839|consen 672 AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAAT 751 (1236)
T ss_pred ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccch
Confidence 45555678888899999999999999999999999999999997788888889999999999998877777666666654
Q ss_pred hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH---CCCHHH-------------------
Q 016124 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NGNAEE------------------- 160 (394)
Q Consensus 103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~------------------- 160 (394)
+.+....-...| +-+......+++...+..+.++...+.+ ..+...+.. ......
T Consensus 752 ~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g 828 (1236)
T KOG1839|consen 752 YINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAG 828 (1236)
T ss_pred hhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccC
Confidence 444333322233 6667777777776666655555444333 222111111 000000
Q ss_pred ---------------------------------HH--HHHHHHHH--------------------HHHhcccCCC-----
Q 016124 161 ---------------------------------AV--ELYKKALR--------------------VIKDSNYMSL----- 180 (394)
Q Consensus 161 ---------------------------------A~--~~~~~a~~--------------------~~~~~~~~~~----- 180 (394)
+. ....++.. ...+......
T Consensus 829 ~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks 908 (1236)
T KOG1839|consen 829 TPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKS 908 (1236)
T ss_pred CCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCC
Confidence 00 00000000 0000000000
Q ss_pred ----------------chH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc
Q 016124 181 ----------------DDS--IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 242 (394)
Q Consensus 181 ----------------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 242 (394)
..| ..+.-....+......|.+.+|.+ ..+++.......+.-||..+..+..++.++...|
T Consensus 909 ~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~ 987 (1236)
T KOG1839|consen 909 EFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG 987 (1236)
T ss_pred CCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc
Confidence 000 011111234555556677888888 8888888888888889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 016124 243 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ 322 (394)
Q Consensus 243 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (394)
+.++|+..-.++.-+.++..|.+++.....+.+++...+..++...|...+.++.....-.++++||..+.+..+++.++
T Consensus 988 d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~ 1067 (1236)
T KOG1839|consen 988 DNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLL 1067 (1236)
T ss_pred chHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124 323 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 323 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
...++++ .|+.+.+.|+....+++++....+..++..+++++...+++..|....+....+..+.
T Consensus 1068 ~~v~e~d-~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1068 LGVEEAD-TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred hhHHHHH-HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence 9999999 9999999999999999999988999999999999999999999999888888776654
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.39 E-value=3.2e-11 Score=86.92 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc
Q 016124 162 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 241 (394)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 241 (394)
..++++++++. |+. +..+|.++...|++++|+..|++++.. .|....++.++|.++...
T Consensus 13 ~~~~~~al~~~-------p~~------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLSVD-------PET------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMML 71 (144)
T ss_pred HHHHHHHHHcC-------HHH------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHH
Confidence 35677777642 221 356899999999999999999999874 577788999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 016124 242 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 321 (394)
Q Consensus 242 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (394)
|++++|+..|++++.+ .|....++.++|.++...|++++|+..|++++.+. ++++ ..+...+.+
T Consensus 72 g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-----p~~~---~~~~~~~~~ 135 (144)
T PRK15359 72 KEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-----YADA---SWSEIRQNA 135 (144)
T ss_pred hhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCh---HHHHHHHHH
Confidence 9999999999999983 57778899999999999999999999999999865 4443 345555554
Q ss_pred HH
Q 016124 322 QT 323 (394)
Q Consensus 322 ~~ 323 (394)
..
T Consensus 136 ~~ 137 (144)
T PRK15359 136 QI 137 (144)
T ss_pred HH
Confidence 43
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.39 E-value=6.4e-12 Score=90.56 Aligned_cols=95 Identities=13% Similarity=0.208 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 98 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 98 (394)
+..+|..+...|++++|+.+|++++.+ +|....++..+|.++...|++++|+..|++++.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 557899999999999999999999875 3556788999999999999999999999999986 567
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
...+++++|.++...|++++|+..|++++.+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999987
No 104
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5.8e-10 Score=87.92 Aligned_cols=312 Identities=16% Similarity=0.053 Sum_probs=186.7
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHh
Q 016124 26 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 105 (394)
Q Consensus 26 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 105 (394)
+....+|.-|+..++-.+..- ..........+|.|++..|+|++|...|.-+..- +...+....+
T Consensus 32 fls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchh
Confidence 456778999999888776542 2222345667899999999999999999876541 2233567788
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHH----------HHHhhCCC---------chHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016124 106 LGSLFIKEGKAVDAESVFSRILKI----------YTKVYGEN---------DGRVGMAMCSLAHAKCANGNAEEAVELYK 166 (394)
Q Consensus 106 l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 166 (394)
|+.+++..|.|.+|.....++-+. .-+. +.. -.+...-...+|.+.+..-.|.+|++.|.
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877654211 1110 100 01122334566777777778888888888
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHH
Q 016124 167 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE 246 (394)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 246 (394)
+.+. +++.....-.++|.+|.++.-++-+.+.+.--+. .+|+...+.+..+....+.=+-..
T Consensus 176 rvL~----------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--------q~pdStiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 176 RVLQ----------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--------QFPDSTIAKNLKACNLFRLINGRT 237 (557)
T ss_pred HHHh----------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--------hCCCcHHHHHHHHHHHhhhhccch
Confidence 8775 3334444557789999999988888776654443 244444444444444433321111
Q ss_pred HHHHHHHH-----------HHHHH-------------hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124 247 AERLLRIC-----------LDIMT-------------KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 302 (394)
Q Consensus 247 A~~~~~~a-----------~~~~~-------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 302 (394)
|..-.... -.+.+ +.+++--..+..+..+|...|..+++..+|..+.+..
T Consensus 238 ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl------ 311 (557)
T KOG3785|consen 238 AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL------ 311 (557)
T ss_pred hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc------
Confidence 21111111 11111 0111111234567788999999999999998876542
Q ss_pred HcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC--------------------------------
Q 016124 303 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE-------------------------------- 350 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~-------------------------------- 350 (394)
.|..| .-+..-|.+....|+.. ...+.++-|.+.++-+-+..
T Consensus 312 --~PttP---~EyilKgvv~aalGQe~-gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 312 --DPTTP---YEYILKGVVFAALGQET-GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred --CCCCh---HHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333 33555666666666654 44444444443332211100
Q ss_pred ---CHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 351 ---SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 351 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
....-....++|.++...|++.+|.++|-+...
T Consensus 386 ~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 386 ESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 000012345678889999999999999887653
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.35 E-value=2.3e-10 Score=103.69 Aligned_cols=249 Identities=13% Similarity=0.054 Sum_probs=170.4
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
-+|....++..|...+...+++++|...++.+++. +|.....+..+|.++...+++.++.-. .++.+...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 46777889999999999999999999999988775 566777888999999999999888777 66665443
Q ss_pred cccCC---------CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHH
Q 016124 175 SNYMS---------LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 245 (394)
Q Consensus 175 ~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 245 (394)
..... .+.+.--.++..+|.+|..+|+.++|...++++++. +|..+.+++++|..|... +.+
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHH
Confidence 20000 001111246788999999999999999999999985 477888999999999999 999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124 246 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 325 (394)
Q Consensus 246 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (394)
+|++++.+++..+-.. .........|..+ +.....+.+.=....++.+.. . ........+..+-..|...
T Consensus 167 KA~~m~~KAV~~~i~~--kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~----~--~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 167 KAITYLKKAIYRFIKK--KQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGH----R--EFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHHHHHHHHhh--hcchHHHHHHHHH--HhcCcccchHHHHHHHHHHhh----h--ccchhHHHHHHHHHHHhhh
Confidence 9999999998854322 1111111112111 111222222222222222221 1 1233455677788889999
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124 326 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 384 (394)
Q Consensus 326 g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 384 (394)
.+++ +++.+++.+++.. |....+...++.+|. +.|.. ...++..+.+
T Consensus 237 ~~~~-~~i~iLK~iL~~~--------~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 237 EDWD-EVIYILKKILEHD--------NKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred hhhh-HHHHHHHHHHhcC--------CcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 9999 9999999999752 334566888888888 55555 5566665554
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.33 E-value=9.7e-11 Score=88.56 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=131.3
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
+|....+ ..++..+...|+-+.+..+..++... ++.....+..+|...+..|++.+|+..++++...
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4444455 67778888888888887777765432 2333445555899999999999999999999876
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
.|.....++.+|.+|.+.|++++|..-|.+++++. +....+.+|+|..+.-.|+++.|..++..+...
T Consensus 130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 56778899999999999999999999999999984 233357899999999999999999999998763
Q ss_pred HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124 172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 211 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (394)
++.+ ..+..|++.+...+|++++|.....+
T Consensus 198 -------~~ad---~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 -------PAAD---SRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -------CCCc---hHHHHHHHHHHhhcCChHHHHhhccc
Confidence 2222 23458999999999999999886543
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.33 E-value=9.3e-10 Score=99.88 Aligned_cols=251 Identities=14% Similarity=0.051 Sum_probs=172.7
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124 8 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 87 (394)
Q Consensus 8 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 87 (394)
++.-+|....++..|...+...+++++|+..++.+++. +|.....++.+|.++...+++.++... .++..
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 34557888889999999999999999999999988775 466677888899999999998888766 55544
Q ss_pred HHHhcC-----------CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC
Q 016124 88 LELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 156 (394)
Q Consensus 88 ~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 156 (394)
...... .+.+..-.+++.+|.||-.+|+.++|...+++++++ +|..+.+++++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-
Confidence 322110 012233368889999999999999999999999987 467778899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 016124 157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 236 (394)
Q Consensus 157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 236 (394)
++++|+.++.+|+...-.. .........|. -.+.....+.+.=..+.++... .. ........+.-+=.
T Consensus 164 dL~KA~~m~~KAV~~~i~~----kq~~~~~e~W~--k~~~~~~~d~d~f~~i~~ki~~----~~--~~~~~~~~~~~l~~ 231 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKK----KQYVGIEEIWS--KLVHYNSDDFDFFLRIERKVLG----HR--EFTRLVGLLEDLYE 231 (906)
T ss_pred hHHHHHHHHHHHHHHHHhh----hcchHHHHHHH--HHHhcCcccchHHHHHHHHHHh----hh--ccchhHHHHHHHHH
Confidence 9999999999998865432 11111111111 1122222233322222222221 11 12234455666678
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 237 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 237 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
.|...++|++++.+++.+++. .+....+...++.+|. +.|.. ...+++.+++.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 889999999999999999984 3455667788888887 44444 55566655543
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=5.5e-09 Score=80.60 Aligned_cols=206 Identities=17% Similarity=0.113 Sum_probs=115.5
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
..|.....+..+|.+|+...+|..|..+|++.-.. .|.........+..++..+.+.+|+.......+
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D---- 106 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD---- 106 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC----
Confidence 34444444555666666666666666666554332 233333344445555555555555544433211
Q ss_pred hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
++.....++..-+.+.+..+++..+..+.++. .....+....+.|.+.++.|+++.|.+-|+.+++
T Consensus 107 ----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----------p~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 107 ----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----------PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ----CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----------cCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 01111122222233334444444443333221 0123445677888888999999999999999988
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----------CC-----Cc------cHHH
Q 016124 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----------KE-----HP------SFVT 229 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~-----~~------~~~~ 229 (394)
. +.-.|.++ ++++.+++..|+++.|+++..+.++.-.+..+ .+ ++ ....
T Consensus 173 v-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 173 V-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred h-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 5 23344443 78889999999999999988887765433211 00 00 1233
Q ss_pred HHHHHHHHHHHcccHHHHHHHHH
Q 016124 230 HLLNLAASYSRSKNFVEAERLLR 252 (394)
Q Consensus 230 ~~~~la~~~~~~g~~~~A~~~~~ 252 (394)
+++..+.++.+.|+++.|.+.+.
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhh
Confidence 45555777888888888876654
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.32 E-value=2e-10 Score=81.03 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=96.2
Q ss_pred cCCCc-hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124 8 LKDDE-PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 86 (394)
Q Consensus 8 l~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 86 (394)
+.+.+ ++..+.++.+|..++..|++++|...|+-...+ +|.....+++||.++..+|++.+|+..|.++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34455 777788899999999999999999999988775 467788999999999999999999999999998
Q ss_pred HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124 87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130 (394)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 130 (394)
+ .|+.+..+.++|.|+...|+.+.|.+.|+.++..+
T Consensus 98 L--------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 98 I--------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred c--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7 46677889999999999999999999999999986
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.31 E-value=2.3e-10 Score=86.61 Aligned_cols=164 Identities=20% Similarity=0.143 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|+|.+|+..++++...
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 334444 77888899999999888887775543 4444556666899999999999999999999875
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
.|....+++.+|.+|.+.|++++|...|.+++++... .+ .+.+|+|..+...|+++.|..++..+..
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-------~p---~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-------EP---SIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-------Cc---hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666778999999999999999999999999998633 22 2448999999999999999999998865
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 016124 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 253 (394)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 253 (394)
. .+....+..+++.+....|++++|.....+
T Consensus 197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred C--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 2 344556788999999999999999876543
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.30 E-value=2e-10 Score=87.46 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHH-HHhCc--HHHHHHHHHHHHHHHH
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYT 131 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~al~~~~ 131 (394)
|.....+..+|.++...|++++|+..|++++.+ .|.....+..+|.++ ...|+ +++|...+++++..
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-- 139 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-- 139 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--
Confidence 455678999999999999999999999999987 566778889999975 67787 59999999999986
Q ss_pred HhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124 132 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173 (394)
Q Consensus 132 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 173 (394)
+|....++..+|..+...|++++|+.+++++++...
T Consensus 140 ------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 140 ------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred ------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455567899999999999999999999999999753
No 112
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.30 E-value=1e-09 Score=100.88 Aligned_cols=209 Identities=19% Similarity=0.209 Sum_probs=185.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124 146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 225 (394)
Q Consensus 146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 225 (394)
...+......|.+.+|.+ .-+++...... .+.-++....++..++.++...|+.++|+.+-.++.-+.++..|.+++
T Consensus 936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYE-LPESLNLLNNV--MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhcccchhhhhh-hhhhhhHHHHh--hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 334555566777888888 77777766544 455677888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC
Q 016124 226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 305 (394)
Q Consensus 226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 305 (394)
.....+.+++......++...|...+.++..+..-..+++||..+.+..+++.++...++++.|+.+++.|+.......+
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 016124 306 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL 358 (394)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 358 (394)
+.+..++.++..++.++...+++. .|+...+....++...+|.+++.+..+.
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~dfr-~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFR-NALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHHHH-HHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence 999999999999999999999999 9999999999999999999987665543
No 113
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=2.4e-08 Score=85.09 Aligned_cols=338 Identities=12% Similarity=0.075 Sum_probs=207.6
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH--HHHHHHHhh-------------chhH
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG--MAKVLGSIG-------------RAKK 76 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g-------------~~~~ 76 (394)
+......+..||..|.+.|.+++|.+.|++++......- +-.....++.. -..+...++ +.+-
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr--DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR--DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh--hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 445677889999999999999999999999987543221 11111111111 111111111 1111
Q ss_pred HHHHHHHHHHHHHH----hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 016124 77 AVEIYHRVITILEL----NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 152 (394)
Q Consensus 77 A~~~~~~al~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 152 (394)
....|+..+....- ..-..+|.....+. -.+-...|+..+-+..|.+|+....-...... ....+..+|..|
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~--kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs--~~~Lw~~faklY 397 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWH--KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGS--PGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHH--hhhhhhcCChHHHHHHHHHHHHccCcccCCCC--hhhHHHHHHHHH
Confidence 12222222221100 00011233333332 33445568888889999998875432212222 345678899999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----hhCCCCccH-
Q 016124 153 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK----YKGKEHPSF- 227 (394)
Q Consensus 153 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~- 227 (394)
...|+.+.|...++++... .-+.-..++.++.+.|..-....+++.|..+.+.|..+-.. .+...+|..
T Consensus 398 e~~~~l~~aRvifeka~~V------~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKV------PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HhcCcHHHHHHHHHHhhcC------CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 9999999999999999875 22344556788889999989999999999999988754221 111222322
Q ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124 228 -----VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 302 (394)
Q Consensus 228 -----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 302 (394)
..++...+.+....|-++.....|++.+++. ..+.....|.|..+....-++++.+.|++.+.++
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr--------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF-- 541 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR--------IATPQIIINYAMFLEEHKYFEESFKAYERGISLF-- 541 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC--
Confidence 2345556666677777777778888887753 2334556788888888889999999999988876
Q ss_pred HcCCCChhHHHHHHHH---HHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHH-HHHHHHHHHHHhcCchhhhhhH
Q 016124 303 AFGKDSLPVGEALDCL---VSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML-TLKKVVSYLDKLGRKEEKFPLK 378 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~l---~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~ 378 (394)
..|.+...|... ..........+ .|..+|++|++.+ .|.... .+...+.+-...|--..|+..|
T Consensus 542 ----k~p~v~diW~tYLtkfi~rygg~klE-raRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 542 ----KWPNVYDIWNTYLTKFIKRYGGTKLE-RARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred ----CCccHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 234444444432 22222222355 8889999998742 344443 3444566666778778888888
Q ss_pred HHHHH
Q 016124 379 KRLSN 383 (394)
Q Consensus 379 ~~a~~ 383 (394)
++|..
T Consensus 610 erat~ 614 (835)
T KOG2047|consen 610 ERATS 614 (835)
T ss_pred HHHHh
Confidence 87643
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=2.7e-08 Score=87.25 Aligned_cols=260 Identities=12% Similarity=0.085 Sum_probs=155.8
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH----HHHHhhCCCchH---------HHHHHHHHHHHHHHCCCHHHH
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK----IYTKVYGENDGR---------VGMAMCSLAHAKCANGNAEEA 161 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A 161 (394)
+.......|++.+.-+...++.+.|+++|+++-. +.+-. ..+.+. ....+...|......|+.+.|
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 3445667889999999999999999999998632 21111 111111 112456667778888999999
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc
Q 016124 162 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 241 (394)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 241 (394)
+.+|..|-+. +.+.++..-+|+.++|..+.++.- ...+.+.||+.|...
T Consensus 932 l~~Y~~A~D~------------------fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 932 LSFYSSAKDY------------------FSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYEND 980 (1416)
T ss_pred HHHHHHhhhh------------------hhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhh
Confidence 9998887653 445566677778777766554421 123556788888888
Q ss_pred ccHHHHHHHHHHHHHH------HHhhcCCCC------CcchHHHHHHHHHHHhhc-ChHHHHHHHHHH------------
Q 016124 242 KNFVEAERLLRICLDI------MTKTVGPDD------QSISFPMLHLGITLYHLN-RDKEAEKLVLEA------------ 296 (394)
Q Consensus 242 g~~~~A~~~~~~a~~~------~~~~~~~~~------~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a------------ 296 (394)
|++.+|+.+|.++... +++..-.+. .....-....|..|...| +.+.|..+|.+|
T Consensus 981 g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHh
Confidence 8888888887766432 222100000 000001122344455555 556666655443
Q ss_pred ------HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH------HHHHHHhh-----------cC-----
Q 016124 297 ------LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR------VLRIQERE-----------FG----- 348 (394)
Q Consensus 297 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~------al~~~~~~-----------~~----- 348 (394)
+++..+-+.++ ..+..+..-+..+....+++ +|..++-. |+.+.... ..
T Consensus 1061 tqQf~aL~lIa~DLd~~--sDp~ll~RcadFF~~~~qye-kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1061 TQQFSALDLIAKDLDAG--SDPKLLRRCADFFENNQQYE-KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred hcccHHHHHHHHhcCCC--CCHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC
Confidence 22222222222 12345666777888888888 88776544 44433211 11
Q ss_pred -CCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 349 -SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 349 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
++......++..+|.++.++|.|..|-+-|.+|-..-+.++
T Consensus 1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMr 1179 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMR 1179 (1416)
T ss_pred CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHH
Confidence 11134457888999999999999999999888765544443
No 115
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=3.5e-08 Score=79.35 Aligned_cols=274 Identities=14% Similarity=0.087 Sum_probs=184.3
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124 13 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 92 (394)
Q Consensus 13 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 92 (394)
+...-.+..-+.....+|+++.+-.++.++-+.. ++ .........+.+....|+++.|..-..++++.
T Consensus 115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----- 182 (400)
T COG3071 115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GD-DTLAVELTRARLLLNRRDYPAARENVDQLLEM----- 182 (400)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CC-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----
Confidence 3334455666788889999999999999887642 11 23445667889999999999999999988876
Q ss_pred CCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH--HHHHCCCHHHHHH---HHHH
Q 016124 93 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH--AKCANGNAEEAVE---LYKK 167 (394)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~---~~~~ 167 (394)
.|....++.....+|...|++.+...+..+.-+.. . -+++... -+-+.+. ++...++-..+.. +.+.
T Consensus 183 ---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~--l~~~e~~-~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 183 ---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--L--LSDEEAA-RLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred ---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--C--CChHHHH-HHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 45566777778899999999999888877654421 1 1122222 2222221 1222222222222 2221
Q ss_pred HHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHH
Q 016124 168 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 247 (394)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 247 (394)
.-... ..+|.+. ..++.-+...|+.++|.++.+++++.. .++. ....++ ...-+++..=
T Consensus 255 ~pr~l-------r~~p~l~---~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~---L~~~~~--~l~~~d~~~l 313 (400)
T COG3071 255 QPRKL-------RNDPELV---VAYAERLIRLGDHDEAQEIIEDALKRQ------WDPR---LCRLIP--RLRPGDPEPL 313 (400)
T ss_pred ccHHh-------hcChhHH---HHHHHHHHHcCChHHHHHHHHHHHHhc------cChh---HHHHHh--hcCCCCchHH
Confidence 11111 1223222 557888899999999999999988742 1222 111111 2345677776
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC
Q 016124 248 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 327 (394)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 327 (394)
++..++.+. .+|+....+..||.++...+.|.+|..+|+.+++.. ..+..+..+|.++.+.|+
T Consensus 314 ~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 314 IKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQLGE 376 (400)
T ss_pred HHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCC
Confidence 666666665 456666888999999999999999999999888743 123457889999999999
Q ss_pred CchHHHHHHHHHHHHHHh
Q 016124 328 DDTKLLELLKRVLRIQER 345 (394)
Q Consensus 328 ~~~~A~~~~~~al~~~~~ 345 (394)
.. +|.+.+++++....+
T Consensus 377 ~~-~A~~~r~e~L~~~~~ 393 (400)
T COG3071 377 PE-EAEQVRREALLLTRQ 393 (400)
T ss_pred hH-HHHHHHHHHHHHhcC
Confidence 99 999999999965443
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.28 E-value=3.2e-09 Score=81.62 Aligned_cols=169 Identities=16% Similarity=0.138 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124 186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 265 (394)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 265 (394)
...+...|......|++.+|+..|++.+... +.++....+...+|.++...|++++|+..+++.+... |.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3456789999999999999999999988753 4567788899999999999999999999999998854 67
Q ss_pred CCcchHHHHHHHHHHHhhc-----------ChHHHHHHHHHHHHHHHHHcCCCChhHHH--------------HHHHHHH
Q 016124 266 DQSISFPMLHLGITLYHLN-----------RDKEAEKLVLEALYIREIAFGKDSLPVGE--------------ALDCLVS 320 (394)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~l~~ 320 (394)
++....+++.+|.++.... ...+|+..|+..+... |+++.... --..+|.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999998876643 2346777777777655 55544322 2345788
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124 321 IQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF 375 (394)
Q Consensus 321 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 375 (394)
.|.+.|.+. .|+..++.+++-+ ++.+....++..++..|...|..+.|.
T Consensus 150 ~Y~~~~~y~-aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYK-AAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HH-HHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHH-HHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999 9999999998865 567888889999999999999988543
No 117
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.28 E-value=3.9e-09 Score=81.14 Aligned_cols=166 Identities=19% Similarity=0.143 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124 142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 221 (394)
Q Consensus 142 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 221 (394)
...++..|......|++.+|+..|++.+... |.++....+...+|.++...|++++|+..+++.+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----- 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----- 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----
Confidence 4567889999999999999999999998865 3445556777899999999999999999999988764
Q ss_pred CCCccHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhhcCCCCCcchHH--------------HHHH
Q 016124 222 KEHPSFVTHLLNLAASYSRSK-----------NFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLHL 276 (394)
Q Consensus 222 ~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~l 276 (394)
|.++....+++.+|.++.... ...+|+..|+..+..+ |+++....+ -..+
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888988876543 3347777777777644 344433322 2456
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc
Q 016124 277 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 329 (394)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 329 (394)
|..|.+.|.+..|+..++.+++.. |+.+....++..++..+.++|...
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence 888999999999999999998876 777888889999999999999765
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=7.3e-10 Score=84.41 Aligned_cols=120 Identities=11% Similarity=0.065 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 016124 155 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 234 (394)
Q Consensus 155 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 234 (394)
.++.++++..+++++... |++ ...+..+|.+|...|++++|+..|++++.+ .|....++..+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-------P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~l 113 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-------PQN---SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAAL 113 (198)
T ss_pred chhHHHHHHHHHHHHHHC-------CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 677788999999988853 333 446789999999999999999999999986 46677888999
Q ss_pred HHHH-HHccc--HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 235 AASY-SRSKN--FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 235 a~~~-~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
|.++ ...|+ +++|...+++++. .+|....++..+|..+...|++++|+.+++++++..
T Consensus 114 A~aL~~~~g~~~~~~A~~~l~~al~--------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 114 ATVLYYQAGQHMTPQTREMIDKALA--------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9974 67777 5999999999998 357778899999999999999999999999998865
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=4.7e-10 Score=79.16 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
+......+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 667788899999999999999999999988876 6778899999999999999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 173 (394)
+|+.+..+.++|.++...|+.+.|.+.|+.++..+.
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 344456789999999999999999999999999874
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.26 E-value=6.1e-10 Score=83.23 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
....+..++.+|.++...|++++|+..|++++.+. ++++....++.++|.++...|++++|+..+++++.+
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---- 101 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---- 101 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34457778999999999999999999999999873 233455678999999999999999999999999986
Q ss_pred cCCCCcchHhhhHhHHHHHH-------HhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124 92 RGTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGR 140 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 140 (394)
.|.....+..+|.++. ..|+++.|...+.+++..+++..+.+++.
T Consensus 102 ----~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 102 ----NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred ----CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 2333445556666665 89999999999999999988887666543
No 121
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.25 E-value=6.5e-10 Score=83.08 Aligned_cols=125 Identities=11% Similarity=0.070 Sum_probs=97.8
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
......+..+|.++...|++++|+..|++++.+. ++++....++.++|.++...|++++|+..+++++.+.+..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3456788999999999999999999999999873 2344556789999999999999999999999999874321
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 229 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 229 (394)
......+..++.++|..+...|+++.|...+.+++...++..+.+++....
T Consensus 106 --~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 106 --PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred --HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 122333445555566666699999999999999999988887766654433
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.25 E-value=1.5e-08 Score=79.79 Aligned_cols=187 Identities=12% Similarity=0.068 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
+..++..|......|++++|+..|++++... +.++....+...+|.+++..+++++|+..+++.+.. .|+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcC
Confidence 4456788999999999999999999998863 455777788899999999999999999999999987 457
Q ss_pred CcchHhhhHhHHHHHHHhC---------------c---HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCC
Q 016124 96 SADLVLPLFSLGSLFIKEG---------------K---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 157 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 157 (394)
+|....+++.+|.++...+ + ..+|+..|++.++.++ +++..
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP-----~S~ya---------------- 160 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP-----NSQYT---------------- 160 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc-----CChhH----------------
Confidence 8888899999998865544 1 1344455555554431 22222
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 016124 158 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 237 (394)
Q Consensus 158 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 237 (394)
.+|...+..+.... +.--..+|..|.+.|+|..|+.-++.+++.. ++.+....++..++..
T Consensus 161 -~~A~~rl~~l~~~l-------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~a 221 (243)
T PRK10866 161 -TDATKRLVFLKDRL-------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENA 221 (243)
T ss_pred -HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHH
Confidence 22222222221111 1122467888888888888888888877643 3456677788888888
Q ss_pred HHHcccHHHHHHHHH
Q 016124 238 YSRSKNFVEAERLLR 252 (394)
Q Consensus 238 ~~~~g~~~~A~~~~~ 252 (394)
|...|..++|.....
T Consensus 222 y~~lg~~~~a~~~~~ 236 (243)
T PRK10866 222 YRQLQLNAQADKVAK 236 (243)
T ss_pred HHHcCChHHHHHHHH
Confidence 888888888877654
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.24 E-value=1.2e-08 Score=80.32 Aligned_cols=172 Identities=13% Similarity=0.037 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124 143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222 (394)
Q Consensus 143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 222 (394)
...+..|..+...|++++|+..|++++... |.++....+...+|.++...+++++|+..+++.++.. |
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRY-------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 446678888899999999999999998854 4556667778899999999999999999999998863 5
Q ss_pred CCccHHHHHHHHHHHHHHcc---------------c---HHHHHHHHHHHHHHHHhhcCCCCCcchHH------------
Q 016124 223 EHPSFVTHLLNLAASYSRSK---------------N---FVEAERLLRICLDIMTKTVGPDDQSISFP------------ 272 (394)
Q Consensus 223 ~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------ 272 (394)
++|....+++.+|.++...+ + ..+|+..|++.++.+ |+++....+
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78888999999998764443 1 245666777666643 233222222
Q ss_pred --HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 016124 273 --MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 337 (394)
Q Consensus 273 --~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~ 337 (394)
-..+|..|.+.|.|..|+.-++.+++-. |+.+....++..+...|...|..+ +|.....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~-~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNA-QADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChH-HHHHHHH
Confidence 2356888999999999999999998876 777888999999999999999988 7766543
No 124
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.22 E-value=4.9e-09 Score=76.05 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=99.1
Q ss_pred HhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHH
Q 016124 112 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 191 (394)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 191 (394)
..++...+...++..+.- .++++....+...+|.++...|++++|...|++++.. .+++.....+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR 90 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence 567777777767766654 3455666778889999999999999999999999884 2455666667789
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124 192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 255 (394)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 255 (394)
+|.++...|++++|+..++.. +..+........+|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999998652 1344556677889999999999999999999874
No 125
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=2.1e-07 Score=79.61 Aligned_cols=324 Identities=13% Similarity=0.062 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH----
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL---- 90 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---- 90 (394)
....+...|..|...|+.+.|...|+++...- -+.-.+.+.++...|..-....+++.|.++.++|...-..
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 34667889999999999999999999998752 1223466888888999888999999999999988754211
Q ss_pred hcCCCCcch------HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHH
Q 016124 91 NRGTESADL------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 164 (394)
Q Consensus 91 ~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 164 (394)
......|.. ..++...+......|-++.....|.+.+++.- -.| ....|.|..+....-++++.+.
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-----aTP---qii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-----ATP---QIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHhhHHHHHHHHH
Confidence 011112222 33455566677777888888888888887632 133 3456778888888889999999
Q ss_pred HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHH-HHHHHHHHHHHccc
Q 016124 165 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT-HLLNLAASYSRSKN 243 (394)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~ 243 (394)
|++.+.+++ -|....+...|......-+.--+.+.|..+|++|++.+ +|..+. .+...+.+-..-|-
T Consensus 534 YErgI~LFk-----~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 534 YERGISLFK-----WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred HHcCCccCC-----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhH
Confidence 999998863 34455555565555555444557899999999999854 233333 34445666666677
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh----cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 016124 244 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 319 (394)
Q Consensus 244 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 319 (394)
-..|+..|+++-.. -++... ..+-++|... =-...-...|++|++.. |+ ..........+
T Consensus 602 ar~amsiyerat~~-------v~~a~~---l~myni~I~kaae~yGv~~TR~iYekaIe~L-----p~-~~~r~mclrFA 665 (835)
T KOG2047|consen 602 ARHAMSIYERATSA-------VKEAQR---LDMYNIYIKKAAEIYGVPRTREIYEKAIESL-----PD-SKAREMCLRFA 665 (835)
T ss_pred HHHHHHHHHHHHhc-------CCHHHH---HHHHHHHHHHHHHHhCCcccHHHHHHHHHhC-----Ch-HHHHHHHHHHH
Confidence 77788887776441 222111 1222222221 11234466788888765 22 23344556788
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 320 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 320 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
.+-.+.|..+ .|...|.-+-++..- ..+++...++ -..-.+.|+ .+.++.++.+++...
T Consensus 666 dlEtklGEid-RARaIya~~sq~~dP---r~~~~fW~tw---k~FEvrHGn----edT~keMLRikRsvq 724 (835)
T KOG2047|consen 666 DLETKLGEID-RARAIYAHGSQICDP---RVTTEFWDTW---KEFEVRHGN----EDTYKEMLRIKRSVQ 724 (835)
T ss_pred HHhhhhhhHH-HHHHHHHhhhhcCCC---cCChHHHHHH---HHHHHhcCC----HHHHHHHHHHHHHHH
Confidence 8899999998 888888776655321 1233444443 445566777 455666666665543
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=1.8e-09 Score=93.00 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 94 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 94 (394)
....-..++..+...|-..+|+..|++.- .+.....||...|+..+|.....+-++
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le-------- 452 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE-------- 452 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc--------
Confidence 34445678888999998888888886642 344567888888988888877666543
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
.+..+..|..+ |++-.=..+|+++.++.+. ..+.+...+|......++|+++.+.++.++++.
T Consensus 453 -k~~d~~lyc~L-------GDv~~d~s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-- 515 (777)
T KOG1128|consen 453 -KDPDPRLYCLL-------GDVLHDPSLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEIN-- 515 (777)
T ss_pred -CCCcchhHHHh-------hhhccChHHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhcC--
Confidence 22333444444 4444445666777766433 223455667777777899999999999998863
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124 175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 254 (394)
Q Consensus 175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 254 (394)
+....+++.+|.+....+++..|...|..++.. .|+...+++|++..|...|+-.+|...++++
T Consensus 516 --------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 516 --------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred --------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 233567789999999999999999999988874 5778889999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHc
Q 016124 255 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 304 (394)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 304 (394)
++. +......+-|.-.+....|.+++|++.+.+.+.+.+...
T Consensus 580 lKc--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 580 LKC--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhc--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 883 133445566777788899999999999999988876543
No 127
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.4e-08 Score=78.48 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=142.2
Q ss_pred HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016124 69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 148 (394)
Q Consensus 69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 148 (394)
....+|.+|++++..-.+ ..|.....+..||.||+...+|..|..+|++.-.. .|........-
T Consensus 21 I~d~ry~DaI~~l~s~~E--------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE--------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 456678888877665433 35556677889999999999999999999987654 56666666777
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124 149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 228 (394)
Q Consensus 149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 228 (394)
+..++..+.+..|+.......+ .+.....+...-+.+.+..+++..+..+.++. .....+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D----------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----------p~en~A 144 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLD----------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----------PSENEA 144 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcC----------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----------cCCCcc
Confidence 8888999999999887765432 34444555566677788888888887766542 112456
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
....+.|.+..+.|+++.|.+-|+.+++. ++..|. .-++++.++.+.|+++.|+++..+.++.-
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 67788999999999999999999999883 233343 34689999999999999999998887754
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=1.2e-09 Score=78.62 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
|........+|..+...|++++|...+++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----- 80 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----- 80 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 455677889999999999999999999998876 4556788999999999999999999999999876
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
.|.....+..+|.++...|++++|+..++++++..
T Consensus 81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34456678899999999999999999999999864
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=1e-09 Score=78.98 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=92.8
Q ss_pred cccCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 016124 6 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 85 (394)
Q Consensus 6 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 85 (394)
+..-..+|........+|..+...|++++|...+++++... |....++..+|.++...|++++|...+++++
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777888999999999999999999999988752 3445778899999999999999999999988
Q ss_pred HHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 86 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
.. .|.....+..+|.++...|++++|+..++++++.
T Consensus 79 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 79 AL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred hc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76 4566788899999999999999999999999987
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=3e-09 Score=91.71 Aligned_cols=225 Identities=18% Similarity=0.183 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124 57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 136 (394)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 136 (394)
.......++..+...|-..+|+..+++. ..+.....||...|+..+|.....+-++
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le-------- 452 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE-------- 452 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc--------
Confidence 4445667889999999999998888763 2345567889999999998888776554
Q ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124 137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 216 (394)
Q Consensus 137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 216 (394)
.+.....|..+|++... -.+|+++.++.+.. .+.+...+|......++|+++..+++.++++
T Consensus 453 -k~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~---------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~- 514 (777)
T KOG1128|consen 453 -KDPDPRLYCLLGDVLHD-------PSLYEKAWELSNYI---------SARAQRSLALLILSNKDFSEADKHLERSLEI- 514 (777)
T ss_pred -CCCcchhHHHhhhhccC-------hHHHHHHHHHhhhh---------hHHHHHhhccccccchhHHHHHHHHHHHhhc-
Confidence 12233445555555444 45555555554321 1234456677777789999999999999986
Q ss_pred HHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124 217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 296 (394)
Q Consensus 217 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (394)
+|....+++.+|.+..+.++++.|.+.|..++.+ .|+...++.+++..|...|+-.+|...+++|
T Consensus 515 -------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 515 -------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred -------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 5677789999999999999999999999999873 5788899999999999999999999999999
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Q 016124 297 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 347 (394)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~ 347 (394)
++.. ..++. .+-+.-.+....|.++ +|+..+.+.+.+.....
T Consensus 580 lKcn-----~~~w~---iWENymlvsvdvge~e-da~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 580 LKCN-----YQHWQ---IWENYMLVSVDVGEFE-DAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhcC-----CCCCe---eeechhhhhhhcccHH-HHHHHHHHHHHhhhhcc
Confidence 9854 23333 4556666778899999 99999999998876644
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.2e-07 Score=71.67 Aligned_cols=193 Identities=19% Similarity=0.106 Sum_probs=145.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124 29 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 108 (394)
Q Consensus 29 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 108 (394)
..+.++-+..+...+...... .-.++....+-.+..+....|+.+-|..++++....+ |....+...-|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam 94 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAM 94 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHH
Confidence 456777888888777765543 1223455566677777888899999999988765542 333455556688
Q ss_pred HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124 109 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 188 (394)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (394)
.+...|++++|+++|+..++ ++|....++-.--.+...+|+.-+|++.+..-++.+.. | ..+
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D----~EA 156 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------D----QEA 156 (289)
T ss_pred HHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------c----HHH
Confidence 89999999999999998775 34555555555556677889999999999998887632 2 346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHH
Q 016124 189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDI 257 (394)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~ 257 (394)
|..++.+|...|+|++|.-++++.+-+ .|.....+..+|.++.-+| +..-|.++|.+++++
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999998764 5666677778888887766 567899999999985
No 132
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.6e-07 Score=69.38 Aligned_cols=227 Identities=15% Similarity=0.093 Sum_probs=164.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124 51 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130 (394)
Q Consensus 51 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 130 (394)
.++....+..+..-+..|....+|++|...+.+|.+..+... .....+.++-..+.+......+.++..+++++..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455666777778889999999999999999998776532 334556778888888999999999999999999998
Q ss_pred HHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016124 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 210 (394)
Q Consensus 131 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 210 (394)
.... +|+.+..-...+--.....++++|+.+|++++.+.+.. .........+...++++.+..++++|-..+.
T Consensus 102 ~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 102 VECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 8753 44444443444445567789999999999999998753 3334445566788999999999999998888
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124 211 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 290 (394)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (394)
+-..+..... ..+.....+.....+|.-..++..|...++...++ .+-..++...++.+|-..| ..|+.++..
T Consensus 175 Ke~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 175 KEGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HhhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 7766655543 33444455556667777788999999999876553 1122345556666665544 567777665
Q ss_pred HHH
Q 016124 291 KLV 293 (394)
Q Consensus 291 ~~~ 293 (394)
..+
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 544
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.17 E-value=7.5e-09 Score=75.12 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=102.5
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
+.-.......++...+...++..+.- .++++....+...+|.++...|++++|...|+.++.. .+++...
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~ 84 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELK 84 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHH
Confidence 33344444688888887777776654 3455666778889999999999999999999999875 2234445
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 169 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 169 (394)
..+...++.++...|++++|+..++.. ++.+....+...+|.++...|++++|...|++++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 667888999999999999999998652 1344556678889999999999999999999874
No 134
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.6e-07 Score=70.51 Aligned_cols=226 Identities=15% Similarity=-0.003 Sum_probs=161.4
Q ss_pred CCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124 136 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 215 (394)
Q Consensus 136 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 215 (394)
++....+..+..-+..|....+|++|...+.++.+-.+.. ......+..+...+........+.++..+++++..+
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn----rslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN----RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444455667777888899999999999999999877653 455666778888888999999999999999999999
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124 216 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 295 (394)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (394)
+.+.+ .|+.+..-...+--....-++++|+++|++++.+.+.. .........+...+.++.+..++.+|-..+.+
T Consensus 101 Y~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 101 YVECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 88875 34444433334444566789999999999999987653 22223345567788999999999999988888
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124 296 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF 375 (394)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 375 (394)
-..+.... ...+.....+.....++....++. .|..+++..-++ .+-..++...++.+|-..|. .|+.++..
T Consensus 176 e~~~~~~~--~~y~~~~k~~va~ilv~L~~~Dyv-~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 176 EGVAADKC--DAYNSQCKAYVAAILVYLYAHDYV-QAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred hhhHHHHH--hhcccHHHHHHHHHHHHhhHHHHH-HHHHHhcchhcC----ccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 76666554 233444445555556666677887 888887776554 22334566677777766654 57777665
Q ss_pred hhH
Q 016124 376 PLK 378 (394)
Q Consensus 376 ~~~ 378 (394)
...
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 543
No 135
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=5.2e-09 Score=84.48 Aligned_cols=263 Identities=15% Similarity=0.101 Sum_probs=158.0
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhh
Q 016124 24 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 103 (394)
Q Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 103 (394)
+-++-.|+|..++.-++ +. ..+.+........+.+++..+|+++..+.-.. ...+|. ..+.
T Consensus 9 rn~fy~G~Y~~~i~e~~--~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~----------~~~~~~-l~av 69 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS--LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIK----------KSSSPE-LQAV 69 (290)
T ss_dssp HHHHCTT-HHHHCHHHH--CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-----------TTSSCC-CHHH
T ss_pred HHHHHhhhHHHHHHHhh--cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhc----------cCCChh-HHHH
Confidence 34556899988886555 11 22334556667778899999998776553321 112232 3344
Q ss_pred HhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124 104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 182 (394)
Q Consensus 104 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 182 (394)
..++..+...++-+.++..++..+ ..... .........|.++...|++++|++.+.+. .+
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~-------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~ 130 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELL-------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GS 130 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCC-------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TC
T ss_pred HHHHHHHhCccchHHHHHHHHHHH-------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------Cc
Confidence 555655544344444444333221 11111 22234556678888899999998887653 11
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHh
Q 016124 183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--NFVEAERLLRICLDIMTK 260 (394)
Q Consensus 183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~ 260 (394)
..+......++...++++.|.+.++...++ ..+...+....+++....| ++.+|.-.|++..+
T Consensus 131 ---lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---- 195 (290)
T PF04733_consen 131 ---LELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---- 195 (290)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----
T ss_pred ---ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----
Confidence 122344667899999999999888775432 2233333333344444455 58899998888543
Q ss_pred hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124 261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 340 (394)
Q Consensus 261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al 340 (394)
..+.....+..++.++..+|++++|.+.+++++.. .|....++.+++.+....|+..+.+.+++.+..
T Consensus 196 ----~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 196 ----KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp ----CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred ----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 23456678889999999999999999999998652 244566889999999999998524555555543
Q ss_pred HHHHhhcCCCCHHHHH
Q 016124 341 RIQEREFGSESEEVML 356 (394)
Q Consensus 341 ~~~~~~~~~~~~~~~~ 356 (394)
.. .+.||.+..
T Consensus 264 ~~-----~p~h~~~~~ 274 (290)
T PF04733_consen 264 QS-----NPNHPLVKD 274 (290)
T ss_dssp HH-----TTTSHHHHH
T ss_pred Hh-----CCCChHHHH
Confidence 32 456765543
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=6.3e-10 Score=85.96 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
....++.+-.-|.-....++|.+|+..|.+||.+ +|..+..|.+.+.+|.++|.++.|++-++.++.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4456777888899999999999999999999997 3555677899999999999999999999999998
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
+|....+|..||.+|..+|++.+|+..|++++++
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 7888999999999999999999999999999997
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.16 E-value=3.8e-09 Score=79.18 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=87.6
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
..+..+..++.+|..+...|++++|+.+|++++.... +.+....++..+|.++...|++++|+..+++++..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 4556677889999999999999999999999998642 23344678999999999999999999999999986
Q ss_pred hcCCCCcchHhhhHhHHHHHHHhCc-------HHHHHHHHHHHHHHHHHhhC
Q 016124 91 NRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG 135 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~ 135 (394)
.|.....+..+|.++...|+ ++.|+..+.++++..++...
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 34456677778888877665 56666666666666555443
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.4e-07 Score=71.31 Aligned_cols=192 Identities=15% Similarity=0.028 Sum_probs=137.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 016124 115 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 194 (394)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~ 194 (394)
+.++-.++....+...... .-.++....+-.+..+....|+.+-|..++++..+.+ |.++.+. ..-|.
T Consensus 27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~---~lkam 94 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVG---KLKAM 94 (289)
T ss_pred CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHH---HHHHH
Confidence 4455555555555444332 1223444456666777788899999999998876654 2333322 44678
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 016124 195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 274 (394)
Q Consensus 195 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (394)
.+...|++++|+++|+..++ ++|....++-.--.+...+|+.-+|++.+..-++.+ +....+|.
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~ 158 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWH 158 (289)
T ss_pred HHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHH
Confidence 88899999999999998775 456665666666667788899999999888887753 44567899
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHH
Q 016124 275 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLKRVLRIQ 343 (394)
Q Consensus 275 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~~A~~~~~~al~~~ 343 (394)
.++.+|...|++++|.-++++.+-+. |.....+..+|.++...|. .+ -|.++|.+++++.
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~~--------P~n~l~f~rlae~~Yt~gg~eN~~-~arkyy~~alkl~ 221 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLIQ--------PFNPLYFQRLAEVLYTQGGAENLE-LARKYYERALKLN 221 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHhC
Confidence 99999999999999999999987643 4444456677777777664 44 6888999998864
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.8e-09 Score=81.78 Aligned_cols=102 Identities=28% Similarity=0.243 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
...++.+-.-|.-....++|.+|+..|.+|+.+ .|..+..|.+.+.+|.++|.++.|++-++.++.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----- 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence 345666777889999999999999999999997 6777888999999999999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
+|....+|..||.+|..+|++++|++.|++++++.
T Consensus 145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 78889999999999999999999999999999963
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=4.4e-09 Score=73.93 Aligned_cols=103 Identities=13% Similarity=0.174 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
..++.+|..+...|++++|+..|.+++.. .++++....+++.+|.++...|++++|+.++++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46789999999999999999999999875 23444556778899999999999999999999998762 344
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
+....++..+|.++...|++++|..++.++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 555678999999999999999999999999987
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=7.2e-09 Score=72.83 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124 187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 266 (394)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 266 (394)
.+++.+|..+...|++++|+..+.+++... ++++....++..+|.++...|++++|+.+++.++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 346789999999999999999999998642 3344556788899999999999999999999998742 455
Q ss_pred CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 267 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
+....++..+|.++...|++++|..++.+++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5567788999999999999999999999998864
No 142
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=6.9e-07 Score=78.80 Aligned_cols=259 Identities=14% Similarity=0.091 Sum_probs=159.5
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124 65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144 (394)
Q Consensus 65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 144 (394)
+.+....|..++|..+|++.-.. -.|-.+|...|.+++|.+..+. .+......+
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~----------------DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~T 860 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY----------------DLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNT 860 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH----------------HHHHHHHHhcccHHHHHHHHhh----------ccceehhhh
Confidence 45556677777777777765432 2344567777777777665432 244556678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----HHHhcccCCCchHHH---------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALR----VIKDSNYMSLDDSIM---------ENMRIDLAELLHIVGRGQEGRELLEE 211 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (394)
+++.|.-+...++.+.|+++|+++-. +.+-. ..+++.+ ...|...|..+...|+.+.|+.+|..
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL---~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML---KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH---HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 89999999999999999999998522 11100 0111110 13445678888888999999988887
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHH
Q 016124 212 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 291 (394)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (394)
|-+ ++.+..+.+-+|+.++|..+.++.- ...+.+.||..|...|++.+|+.
T Consensus 938 A~D----------------~fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 938 AKD----------------YFSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred hhh----------------hhhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhhHHHHHHHH
Confidence 643 3455667777888888877655432 22456789999999999999999
Q ss_pred HHHHHHHHHHHH--cCCCC-hhHH---------HHHHHHHHHHHHhC-CCchHHHHHHHHH------HH-----------
Q 016124 292 LVLEALYIREIA--FGKDS-LPVG---------EALDCLVSIQTRLG-EDDTKLLELLKRV------LR----------- 341 (394)
Q Consensus 292 ~~~~a~~~~~~~--~~~~~-~~~~---------~~~~~l~~~~~~~g-~~~~~A~~~~~~a------l~----------- 341 (394)
.|.+|-.....+ ...+. .+.. .-+...+..|...| +.. .|..+|.+| ++
T Consensus 989 FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 989 FFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH-KAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh-HHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 998864432211 11111 1100 01223345555665 444 666666543 22
Q ss_pred -HHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Q 016124 342 -IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 384 (394)
Q Consensus 342 -~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 384 (394)
+..+-+.+. ..+..+..-+..+....+|++|..++-.+.+.
T Consensus 1068 ~lIa~DLd~~--sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1068 DLIAKDLDAG--SDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HHHHHhcCCC--CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222212211 12345677788999999999998875554443
No 143
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.09 E-value=1.9e-08 Score=75.38 Aligned_cols=116 Identities=16% Similarity=0.083 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 260 (394)
Q Consensus 181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 260 (394)
..+.....+.++|..+...|++++|+.++++++.... +.+....++.++|.++...|++++|+..+++++..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 3455566789999999999999999999999988632 23345678999999999999999999999999984
Q ss_pred hcCCCCCcchHHHHHHHHHHHhhcC-------hHHHHHHHHHHHHHHHHHcCCCCh
Q 016124 261 TVGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDSL 309 (394)
Q Consensus 261 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~ 309 (394)
.|.....+..+|.++...|+ ++.|+..++++++........++.
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 35556777788888877655 666777777777776665544433
No 144
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=6.2e-09 Score=84.03 Aligned_cols=240 Identities=15% Similarity=0.105 Sum_probs=145.4
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
+++........+.+.+..+|+++..+.-... ..+|. ..+...++..+...++-+.++.-++..+
T Consensus 30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~la~y~~~~~~~e~~l~~l~~~~----- 93 (290)
T PF04733_consen 30 SPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRLLAEYLSSPSDKESALEELKELL----- 93 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHHHHHHHCTSTTHHCHHHHHHHCC-----
T ss_pred CchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHHHHHHHhCccchHHHHHHHHHHH-----
Confidence 3444556667788889999988765543311 11221 2334455555544334344433322211
Q ss_pred hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
...............|.++...|++++|+..+.+. ++ .........++...++++.|.+.++.+.+
T Consensus 94 -~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 94 -ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------GS---LELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp -CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------TC---HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred -HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------Cc---ccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11112123344556678888899999999887653 12 23444567789999999999998877654
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHH
Q 016124 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 248 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 248 (394)
+ .+|... .. ...+.+....| ++.+|...|++..+ ..+.....++.++.+++.+|++++|.
T Consensus 160 ~-------~eD~~l-~q--La~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 160 I-------DEDSIL-TQ--LAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp C-------SCCHHH-HH--HHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred c-------CCcHHH-HH--HHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 2 333322 22 22333444444 68999999988533 23445677889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHcCCCChhH
Q 016124 249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK-EAEKLVLEALYIREIAFGKDSLPV 311 (394)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~ 311 (394)
..+++++. ..|....++.+++.+....|+.. .+.+++.+.... .|+||.+
T Consensus 222 ~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~p~h~~~ 272 (290)
T PF04733_consen 222 ELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----NPNHPLV 272 (290)
T ss_dssp HHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----TTTSHHH
T ss_pred HHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----CCCChHH
Confidence 99998865 34667788999999999999984 455566654433 3677654
No 145
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.7e-06 Score=71.76 Aligned_cols=255 Identities=15% Similarity=0.056 Sum_probs=180.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhCCc--hH----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC--Ccch
Q 016124 28 TLENYEKSMLVYQRVINVLESRYGKT--SI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE--SADL 99 (394)
Q Consensus 28 ~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~ 99 (394)
..|-+++|.++-++++...++....+ .| .....+-.+..+-.-.|++.+|++-...+.+.+.+..++. ....
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 56888999999999998876654333 11 1233445567777788999999999999988877654311 1233
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc-cC
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-YM 178 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~ 178 (394)
+.....+|......+.++.|+..|..|.+..... .-.+.+-.++|.+|...|+-+.--+ +++.....+ ..
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~----~ld~i~p~nt~s 437 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYK----ALDLIGPLNTNS 437 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHH----HHHhcCCCCCCc
Confidence 5567778888889999999999999999875432 2355567789999999887655433 333321110 00
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 258 (394)
.........+++..|...+.++++.+|...+.+.+++..... ...-.+..+..|+.+....|+..++.+...-++++.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 111233456667778888899999999999999998863221 233455667788999999999999999999999988
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHhhcC--hHHHHHHHHH
Q 016124 259 TKTVGPDDQSISFPMLHLGITLYHLNR--DKEAEKLVLE 295 (394)
Q Consensus 259 ~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 295 (394)
++. ++.+...+....+-.++...|+ .....+.+..
T Consensus 516 kKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 516 KKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 877 5666666666677778888887 4444444443
No 146
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=5.9e-06 Score=68.55 Aligned_cols=320 Identities=12% Similarity=0.053 Sum_probs=178.3
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 98 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 98 (394)
+..-|..-..++++..|.+.|++|+.. + ......+...+.+-+.......|..++.+|+.+. |.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdv-------d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--------PR 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDV-------D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--------PR 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc-------c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--------ch
Confidence 344445555666677777777777654 2 2344567777888888888999999999998874 44
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
+-..++....+-..+|+...|.+.|++-++.- |+. .++......-.+.+..+.|...|++-+-..
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~--------P~e-qaW~sfI~fElRykeieraR~IYerfV~~H------ 204 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWE--------PDE-QAWLSFIKFELRYKEIERARSIYERFVLVH------ 204 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC--------CcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheec------
Confidence 45566666666677888888888888776541 111 122222233333344444444444433211
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 258 (394)
|. ...+...+..-...|+..-|...|+.|++.... +......+...|..-..+..++.|.-+|+-+++..
T Consensus 205 ----P~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 205 ----PK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred ----cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 122333444444444444444444444443211 11111222223333333333333333333222210
Q ss_pred ---------------HhhcC---------------------CCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124 259 ---------------TKTVG---------------------PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 302 (394)
Q Consensus 259 ---------------~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 302 (394)
++.+| ..+|..-.++...-.+-...|+.+.-.+.|++|+.-.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-- 352 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-- 352 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--
Confidence 00000 2346666777777778888899999999999998632
Q ss_pred HcCCCChhH----HHHHHHHHHHH---HHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124 303 AFGKDSLPV----GEALDCLVSIQ---TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF 375 (394)
Q Consensus 303 ~~~~~~~~~----~~~~~~l~~~~---~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 375 (394)
|..... --++..+-.++ ....+.+ .+.+.|+.++++ ....+-..+.++...|....++.+...|.
T Consensus 353 ---pp~~ekr~W~RYIYLWinYalyeEle~ed~e-rtr~vyq~~l~l----IPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 353 ---PPASEKRYWRRYIYLWINYALYEELEAEDVE-RTRQVYQACLDL----IPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhh----cCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 111000 11122222221 2345666 788888888875 34455667777888888888888888888
Q ss_pred hhHHHHHHHHHHHH
Q 016124 376 PLKKRLSNLRMKYK 389 (394)
Q Consensus 376 ~~~~~a~~~~~~~~ 389 (394)
..+-.|+-.+++.+
T Consensus 425 kiLG~AIG~cPK~K 438 (677)
T KOG1915|consen 425 KILGNAIGKCPKDK 438 (677)
T ss_pred HHHHHHhccCCchh
Confidence 88887777666543
No 147
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=7.6e-06 Score=67.91 Aligned_cols=221 Identities=16% Similarity=0.108 Sum_probs=151.1
Q ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch--HHHHHHHHHHHH-HHHHcCChHHHHHHHHHHHH
Q 016124 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD--SIMENMRIDLAE-LLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~ 214 (394)
+|..-.++...-.+-...|+.+.-.+.|++|+.-.... .... ....-.+.+.+. .-....+.+.+.+.|+.+++
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~---~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA---SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch---hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44445567777777778899999999999998743210 0001 111112222221 12346788999999999988
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 294 (394)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (394)
+. +..+...+..+...|....++.+...|.+.+-.++..+ |. .........+-...++++....+|+
T Consensus 395 lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--------PK-~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 395 LI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--------PK-DKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred hc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--------Cc-hhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 64 23445667778888888889999999999888887643 11 1233445566677888888888888
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhh
Q 016124 295 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK 374 (394)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 374 (394)
+-++. .|....++...|.+-..+|+.+ .|...|+-|+.-- ..+-|.. .+......-...|.++.|
T Consensus 462 kfle~--------~Pe~c~~W~kyaElE~~Lgdtd-RaRaifelAi~qp----~ldmpel--lwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 462 KFLEF--------SPENCYAWSKYAELETSLGDTD-RARAIFELAISQP----ALDMPEL--LWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhc--------ChHhhHHHHHHHHHHHHhhhHH-HHHHHHHHHhcCc----ccccHHH--HHHHhhhhhhhcchHHHH
Confidence 88763 3777788899999999999999 8999888887521 1122322 344555666778999999
Q ss_pred hhhHHHHHHHHHHHH
Q 016124 375 FPLKKRLSNLRMKYK 389 (394)
Q Consensus 375 ~~~~~~a~~~~~~~~ 389 (394)
..+|++.++..+-.+
T Consensus 527 R~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 527 RALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHHHhcccch
Confidence 999999887655443
No 148
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.00 E-value=2.4e-08 Score=68.38 Aligned_cols=102 Identities=28% Similarity=0.317 Sum_probs=83.7
Q ss_pred hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124 101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180 (394)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 180 (394)
.+.+.+|.++-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... |
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-------p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-------P 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------C
Confidence 46788999999999999999999999985 44566677899999999999999999999999998743 3
Q ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
+++....+...++.++...|++++|+..+-.++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3222333445688899999999999999877664
No 149
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.99 E-value=1.1e-05 Score=72.29 Aligned_cols=340 Identities=13% Similarity=0.036 Sum_probs=199.3
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
++.....+..-+..+...|..++|+.+.-.|- +....+..+-..+.-....++..--..+.+..
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~---------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l------- 406 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAG---------DPEMAADLLEQLEWQLFNGSELSLLLAWLKAL------- 406 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhCC---------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-------
Confidence 34455666677777788888888887654431 22233344444455555555443322222110
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY-GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
..+--...+......++......++.+|..+..++........ +......+......|.+....|++++|+++.+.++.
T Consensus 407 P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 407 PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0000011223334457888889999999999988776543310 001112334445567788889999999999999998
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHH
Q 016124 171 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 250 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 250 (394)
..... ....-..++..+|.+..-.|++++|..+..++.++..... .......+....+.+...+|+...|.
T Consensus 487 ~L~~~-----~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~-- 557 (894)
T COG2909 487 QLPEA-----AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE-- 557 (894)
T ss_pred hcccc-----cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--
Confidence 76432 2333355678899999999999999999999999877653 22233445566788889999433332
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCch
Q 016124 251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 330 (394)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 330 (394)
-..+............+.........+.++...-+++.+..-....++...... +......-.+..|+.+....|+.+
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~- 635 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLD- 635 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHH-
Confidence 222322222222222232222223333333333346777666666666554321 121222223358999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHH-HHHHHHHHHHHHhcCchhhhhhHHH
Q 016124 331 KLLELLKRVLRIQEREFGSESEEVM-LTLKKVVSYLDKLGRKEEKFPLKKR 380 (394)
Q Consensus 331 ~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 380 (394)
+|.............-. .+++.. .+..........+|+.++|.....+
T Consensus 636 ~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 636 KALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99999988887765421 233332 2233333345567888888777666
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=7.3e-09 Score=67.21 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=65.8
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHH
Q 016124 28 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 107 (394)
Q Consensus 28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 107 (394)
.+|++++|+.+++++++..+. .+ ....+..+|.+++..|++++|+..+++ ... .+........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 368999999999999987421 22 445677799999999999999999998 333 233456667789
Q ss_pred HHHHHhCcHHHHHHHHHHH
Q 016124 108 SLFIKEGKAVDAESVFSRI 126 (394)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~a 126 (394)
.++..+|++++|+..++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 151
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.97 E-value=3.1e-08 Score=67.83 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
.+.+.+|.++-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... +++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 45788999999999999999999999884 44556777899999999999999999999999987642 233
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 128 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 128 (394)
+........++.++...|+.++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33555666788999999999999999887764
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.97 E-value=1.2e-08 Score=85.57 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 98 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 98 (394)
+...|..++..|+|++|+..|++++.+. |....++..+|.++...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 5567899999999999999999999862 344567899999999999999999999999987 456
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
...+++.+|.++..+|++++|+..|++++.+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7788999999999999999999999999987
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=1e-07 Score=78.96 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124 186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 265 (394)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 265 (394)
....+..+..++..|++++|+..++..+. ..|+....+...+.++...++..+|.+.+++++..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-------- 369 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-------- 369 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence 34557778888899999999999888655 45677777788899999999999999999999883
Q ss_pred CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124 266 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 338 (394)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 338 (394)
.|.......++|..+...|++.+|+..+...+. +.|+....|..|+..|..+|+.. +|...+.+
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~-~a~~A~AE 433 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRA-EALLARAE 433 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchH-HHHHHHHH
Confidence 455566778999999999999999988888765 33555667889999999999876 55544433
No 154
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.94 E-value=3.4e-05 Score=70.25 Aligned_cols=320 Identities=13% Similarity=0.036 Sum_probs=208.0
Q ss_pred CchHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124 52 KTSILLVTSLLGMAKVLG-SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130 (394)
Q Consensus 52 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 130 (394)
..+...+.+...+|.++. ...+++.|+.++++++.+.++ . .-......+...++.++...+... |...+++.++..
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~-~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-H-RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c-chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 334466778889999887 788999999999999988755 1 111123445566788888888777 999999999987
Q ss_pred HHhhCCCchHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016124 131 TKVYGENDGRVGMAMCSL-AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 209 (394)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 209 (394)
+.. .+.........+ .......+++..|.+.++......... .++.....+....+.+....+..+++++..
T Consensus 130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~----~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR----GDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 652 122222233333 333334489999999999999887542 455555555566677888889899999999
Q ss_pred HHHHHHHHHh--hCCCCccHHHHHHHHHH--HHHHcccHHHHHHHHHHHHHHHHhhcCCC-------C------------
Q 016124 210 EECLLITEKY--KGKEHPSFVTHLLNLAA--SYSRSKNFVEAERLLRICLDIMTKTVGPD-------D------------ 266 (394)
Q Consensus 210 ~~a~~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~------------ 266 (394)
+++....... .+..++....++..+-. ++...|++..+.+.+++.-.......... +
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~ 282 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSS 282 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccc
Confidence 9997776654 11123333444444433 45566777777776665544443332110 0
Q ss_pred -----Ccc----------hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC---CCChh---------------HHH
Q 016124 267 -----QSI----------SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG---KDSLP---------------VGE 313 (394)
Q Consensus 267 -----~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~---------------~~~ 313 (394)
+.. +-++..-|......|..++|.+++.++++..++... ...+. ...
T Consensus 283 ~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~ 362 (608)
T PF10345_consen 283 NSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY 362 (608)
T ss_pred cCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence 000 112223355566677778999999999999888761 11110 012
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124 314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS-ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 382 (394)
Q Consensus 314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 382 (394)
.+..++.+..-.+++. .|......+.....+...+ ........++..|..+...|+.+.|...|.+..
T Consensus 363 ~~~y~~~~~~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWS-KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHHHHHHHCcCHH-HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 2344566677788888 8888888887766543221 122345667788989999999999999998443
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=1e-08 Score=66.48 Aligned_cols=83 Identities=23% Similarity=0.323 Sum_probs=64.7
Q ss_pred hhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 016124 71 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 150 (394)
Q Consensus 71 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 150 (394)
.|++++|+.+++++++.... ++ ....+..+|.+++..|++++|+..+++ ... .+........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 68999999999999987321 22 455677799999999999999999998 433 2333455667799
Q ss_pred HHHHCCCHHHHHHHHHHH
Q 016124 151 AKCANGNAEEAVELYKKA 168 (394)
Q Consensus 151 ~~~~~g~~~~A~~~~~~a 168 (394)
++..+|++++|+..++++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.93 E-value=4.4e-08 Score=82.21 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=93.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016124 190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 269 (394)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 269 (394)
...|...+..|++++|+..|++++.. .|....++.++|.++...|++++|+..+++++.+ .|..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~ 69 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPSL 69 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCC
Confidence 45688889999999999999999985 4566778999999999999999999999999984 4667
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124 270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 325 (394)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (394)
..++..+|.++...|++++|+..|++++.+. ++++. ....++.+....
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~-----P~~~~---~~~~l~~~~~kl 117 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGASLA-----PGDSR---FTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHH
Confidence 7889999999999999999999999999865 44443 344455554433
No 157
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=2.2e-05 Score=65.63 Aligned_cols=151 Identities=20% Similarity=0.117 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
....+.+..+..++..|++++|+..+...+.. .|+++... ...+.++...++..+|.+.+++++..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-------~P~N~~~~---~~~~~i~~~~nk~~~A~e~~~kal~l---- 369 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-------QPDNPYYL---ELAGDILLEANKAKEAIERLKKALAL---- 369 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence 44557788899999999999999999996663 35555544 55899999999999999999999885
Q ss_pred hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
.|.......++|..+.+.|++.+|+..++..+. ..|+....|..||..|..+|+..+|....
T Consensus 370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A~------ 431 (484)
T COG4783 370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLAR------ 431 (484)
T ss_pred ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHHH------
Confidence 455566788999999999999999999988776 56778889999999999999987765433
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124 300 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 342 (394)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~ 342 (394)
+..+...|+++ +|+..+..+.+.
T Consensus 432 -------------------AE~~~~~G~~~-~A~~~l~~A~~~ 454 (484)
T COG4783 432 -------------------AEGYALAGRLE-QAIIFLMRASQQ 454 (484)
T ss_pred -------------------HHHHHhCCCHH-HHHHHHHHHHHh
Confidence 34455667787 888887777654
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-07 Score=77.15 Aligned_cols=142 Identities=19% Similarity=0.227 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH-------HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 87 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 87 (394)
.+.....-|+.++..|+|..|...|++++..+......+.. ....++.+++.++.++++|.+|+....++|.+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34556778999999999999999999999987643222211 34567899999999999999999999999987
Q ss_pred HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHH-HHHHHH
Q 016124 88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYK 166 (394)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~ 166 (394)
.+....+++..|.++...|+|+.|+..|++++++ .|..-.+...+..+.....++.+ ..+.|.
T Consensus 287 --------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 287 --------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred --------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999987 23333445555555554444433 356666
Q ss_pred HHHHHH
Q 016124 167 KALRVI 172 (394)
Q Consensus 167 ~a~~~~ 172 (394)
.++...
T Consensus 351 ~mF~k~ 356 (397)
T KOG0543|consen 351 NMFAKL 356 (397)
T ss_pred HHhhcc
Confidence 666543
No 159
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.89 E-value=5.4e-05 Score=68.94 Aligned_cols=356 Identities=12% Similarity=0.021 Sum_probs=222.9
Q ss_pred cCCCchHHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124 8 LKDDEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 86 (394)
Q Consensus 8 l~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 86 (394)
....+...+.+...+|.+++ ...+++.|..++++++.+.++ ..-......+...++.++...+... |....++.++
T Consensus 51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 33344456778899999887 788999999999999998765 2222334566677789998888777 9999999998
Q ss_pred HHHHhcCCCCcchHhhhHhH-HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 016124 87 ILELNRGTESADLVLPLFSL-GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 165 (394)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 165 (394)
..+... +.........+ .......+++..|...++......... .+......+....+.+....+..+++++..
T Consensus 128 ~~~~~~---~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 128 DSETYG---HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HHhccC---chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 876521 22222233223 333333479999999999998876542 122233344455567777888899999999
Q ss_pred HHHHHHHHhccc-CCCchHHHHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHHHHhhCCC-------C-----------
Q 016124 166 KKALRVIKDSNY-MSLDDSIMENMRIDLA--ELLHIVGRGQEGRELLEECLLITEKYKGKE-------H----------- 224 (394)
Q Consensus 166 ~~a~~~~~~~~~-~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~----------- 224 (394)
+++......... .....+. ..++..+- .++...|+++.+...+++.-.......... +
T Consensus 203 ~~~~~~~~~~q~~~~~~~~q-L~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~ 281 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQ-LKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGS 281 (608)
T ss_pred HHHHHHHhhcccCCCCCcHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeeccccc
Confidence 998776654200 1112222 22333332 355667887787777666555444332110 0
Q ss_pred ------cc----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC---CCCCcc---------------h
Q 016124 225 ------PS----------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG---PDDQSI---------------S 270 (394)
Q Consensus 225 ------~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~---------------~ 270 (394)
+. .+-++..-|......+..++|.+++++++...++... ...+.. .
T Consensus 282 ~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~ 361 (608)
T PF10345_consen 282 SNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQC 361 (608)
T ss_pred ccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHH
Confidence 10 1223333355666777778999999999998887761 111111 1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcC-
Q 016124 271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK-DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG- 348 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~- 348 (394)
.+...++.+..-.|++..|......+.....+...+ ........++..|..+...|+.+ .|...|.+..-.......
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~-~A~~~y~~~~~~~~~~~~~ 440 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE-AALYQYQKPRFLLCEAANR 440 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH-HHHHHHhhhHHhhhhhhcc
Confidence 123445666777899999999999888776543221 11223556777888888999999 999999854422222222
Q ss_pred --CCCHHHHHHHHHHHHHHHHhcCchh
Q 016124 349 --SESEEVMLTLKKVVSYLDKLGRKEE 373 (394)
Q Consensus 349 --~~~~~~~~~~~~la~~~~~~g~~~~ 373 (394)
...+-..-+..++..++...+....
T Consensus 441 ~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 441 KSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred CCcchHHHHHHHHHHHHHhHhhcccch
Confidence 2233344555667777776665444
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.88 E-value=2.2e-08 Score=62.29 Aligned_cols=64 Identities=27% Similarity=0.451 Sum_probs=58.9
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRV 171 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 171 (394)
+..+..+|.++...|++++|+.+|.+++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567889999999999999999999999997 4666779999999999999 799999999999986
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.87 E-value=3.2e-08 Score=61.53 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC-cHHHHHHHHHHHHHH
Q 016124 58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI 129 (394)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 129 (394)
+..+..+|.++...|++++|+..|++++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 456889999999999999999999999998 5677889999999999999 799999999999986
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.86 E-value=1.2e-07 Score=75.17 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=88.7
Q ss_pred HHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC
Q 016124 229 THLLNLAASY-SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 307 (394)
Q Consensus 229 ~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 307 (394)
...+..+..+ ...|++++|+..|+..+..+ |+++....+++.+|.+|...|++++|+..|++++..+ |+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3444555544 56799999999999998854 4556667899999999999999999999999998876 78
Q ss_pred ChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124 308 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 343 (394)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~ 343 (394)
++....++..+|.++...|+.+ +|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~-~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTA-KAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHC
Confidence 8889999999999999999999 9999999998754
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.83 E-value=2.7e-07 Score=73.24 Aligned_cols=103 Identities=9% Similarity=0.026 Sum_probs=87.3
Q ss_pred HHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124 188 MRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 266 (394)
Q Consensus 188 ~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 266 (394)
..+..|..+ ...|++++|+..|+..+... |+.+....+++.+|.+|...|++++|+..|++++..+ +++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s 213 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKS 213 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC
Confidence 335556654 56799999999999988763 3455567889999999999999999999999998854 677
Q ss_pred CcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 267 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
+....++..+|.++...|++++|...|+++++.+
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8889999999999999999999999999998765
No 164
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=4.2e-05 Score=63.82 Aligned_cols=249 Identities=15% Similarity=0.122 Sum_probs=175.6
Q ss_pred HhCcHHHHHHHHHHHHHHHHHhhCCC-chH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC--chH
Q 016124 112 KEGKAVDAESVFSRILKIYTKVYGEN-DGR-----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL--DDS 183 (394)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~ 183 (394)
..|-+++|.++-++++...++....+ ... ....+-.+..+-.-.|++.+|++....+.+.+.+. +++ -..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~--p~~~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF--PTPLLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC--CchHHHHH
Confidence 45778889999888888766653322 111 12335566777788999999999999999998764 221 122
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Q 016124 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 263 (394)
Q Consensus 184 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 263 (394)
..+.++..+|......+.++.|...|..|.+...+. .-.+.+-.++|..|...|+-+.-.+.++. .+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~--------i~ 431 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDL--------IG 431 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHh--------cC
Confidence 334556677877788899999999999998875432 22456677899999998876554433322 12
Q ss_pred CCCC-------cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124 264 PDDQ-------SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336 (394)
Q Consensus 264 ~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 336 (394)
+.+. ....+++..|...+.++++.||...+.+.+++.... ....-++..+..|+.+....|+.. ++.+..
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~-es~nmv 508 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTV-ESRNMV 508 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchH-HHHhcc
Confidence 2221 123345666777888999999999999999987332 233445667888999999999999 999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC--chhhhhhHHH
Q 016124 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR--KEEKFPLKKR 380 (394)
Q Consensus 337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 380 (394)
.-++++..++ ++.|-.......+-.++...|+ .++..+.|..
T Consensus 509 rpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 509 RPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred chHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 9999998886 5566666666667778888887 4555555444
No 165
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3e-06 Score=63.41 Aligned_cols=201 Identities=13% Similarity=0.051 Sum_probs=121.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124 152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 231 (394)
Q Consensus 152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (394)
+...+++++|.++|.++-.+++ ...++..|=..|.++-+...+.. +..+.+.++
T Consensus 24 fgg~~k~eeAadl~~~Aan~yk------------------------laK~w~~AG~aflkaA~~h~k~~--skhDaat~Y 77 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYK------------------------LAKNWSAAGDAFLKAADLHLKAG--SKHDAATTY 77 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHH------------------------HHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHH
Confidence 3444578888888877766543 22333334344444443333322 222344455
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124 232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALYIREIAFGKDSLP 310 (394)
Q Consensus 232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~ 310 (394)
...+.+|.+ +++++|...++++++++... +.....+.-+..+|.+|..- .++++|+.+|+++-+.+..- .....
T Consensus 78 veA~~cykk-~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ss 152 (288)
T KOG1586|consen 78 VEAANCYKK-VDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSS 152 (288)
T ss_pred HHHHHHhhc-cChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhh
Confidence 555555544 47888888888888877654 12222334456788888765 89999999999999887542 11122
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124 311 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 386 (394)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 386 (394)
.-.++...+..-...+++. +|+..|++..... .+++ ..-.-+..-|.|+....+.-.+...+++-.++.|
T Consensus 153 ANKC~lKvA~yaa~leqY~-~Ai~iyeqva~~s-----~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYS-KAIDIYEQVARSS-----LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-----ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 2345666777777888888 8998888876432 1122 2223445567777776777777666666666655
Q ss_pred HHH
Q 016124 387 KYK 389 (394)
Q Consensus 387 ~~~ 389 (394)
.+.
T Consensus 227 ~F~ 229 (288)
T KOG1586|consen 227 AFT 229 (288)
T ss_pred ccc
Confidence 543
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=3.1e-06 Score=62.62 Aligned_cols=208 Identities=13% Similarity=0.124 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124 9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 88 (394)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 88 (394)
+-.+...+..++..|..|-..|-+.-|.--|.+++.+. |..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL- 128 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL- 128 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-
Confidence 33455667778888988988999999998899988873 566778888999999999999999999988886
Q ss_pred HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124 89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 168 (394)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 168 (394)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+. .+++|-..- |..+ -...-++.+|...+.+-
T Consensus 129 -------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L-WLYl---~E~k~dP~~A~tnL~qR 192 (297)
T COG4785 129 -------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL-WLYL---NEQKLDPKQAKTNLKQR 192 (297)
T ss_pred -------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH-HHHH---HHhhCCHHHHHHHHHHH
Confidence 4556667778888888889999988877665543 333443221 1111 12344677776654432
Q ss_pred HHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHH
Q 016124 169 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 248 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 248 (394)
.+- .+...+. .++.. ...|+..+ ...++++....+... .-......+++.+|..+...|+.++|.
T Consensus 193 ~~~--------~d~e~WG---~~iV~--~yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~ 257 (297)
T COG4785 193 AEK--------SDKEQWG---WNIVE--FYLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEAT 257 (297)
T ss_pred HHh--------ccHhhhh---HHHHH--HHHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 221 1211111 11111 12233221 122333332211000 001123467888999999999999999
Q ss_pred HHHHHHHH
Q 016124 249 RLLRICLD 256 (394)
Q Consensus 249 ~~~~~a~~ 256 (394)
.+|+-++.
T Consensus 258 ~LfKLaia 265 (297)
T COG4785 258 ALFKLAVA 265 (297)
T ss_pred HHHHHHHH
Confidence 99998876
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.79 E-value=6.9e-08 Score=64.88 Aligned_cols=96 Identities=26% Similarity=0.390 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124 60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 139 (394)
Q Consensus 60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 139 (394)
++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..++++++... +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 4678899999999999999999999876 23334778899999999999999999999998762 2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
....++..+|.++...|++++|...+.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22267889999999999999999999988764
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.79 E-value=2e-07 Score=62.51 Aligned_cols=96 Identities=26% Similarity=0.345 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC
Q 016124 188 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 267 (394)
Q Consensus 188 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 267 (394)
++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|...+++++.. .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 3578899999999999999999998875 2333467889999999999999999999998873 23
Q ss_pred cchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 268 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
....++..+|.++...|++++|...+.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33467889999999999999999999888753
No 169
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=2.4e-06 Score=79.64 Aligned_cols=214 Identities=16% Similarity=0.126 Sum_probs=158.7
Q ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 217 (394)
Q Consensus 138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 217 (394)
+|..+..|...-......++.++|.+..++|+....-. ...+...++.++.|+-. .-|.-+.-.+.|++|.+.+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R--EeeEKLNiWiA~lNlEn---~yG~eesl~kVFeRAcqyc- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR--EEEEKLNIWIAYLNLEN---AYGTEESLKKVFERACQYC- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc--hhHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHHHHhc-
Confidence 45555556555566778999999999999999875211 11122233334444443 4455566677777777653
Q ss_pred HhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124 218 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 297 (394)
Q Consensus 218 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 297 (394)
+...++..|..+|...+++++|.++++..++-+. .....|..++..++.+++-+.|...+.+|+
T Consensus 1528 --------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1528 --------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred --------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2345678899999999999999999999988543 345678889999999999999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhh
Q 016124 298 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL 377 (394)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 377 (394)
... |. .+........|.+-++.|+.+ .+...|+-.+. .+|...+.|.-..+.-.+.|+.+-+..+
T Consensus 1592 ~~l-----Pk-~eHv~~IskfAqLEFk~GDae-RGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1592 KSL-----PK-QEHVEFISKFAQLEFKYGDAE-RGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred hhc-----ch-hhhHHHHHHHHHHHhhcCCch-hhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 876 22 223445667889999999999 88888888775 3566677788888888999999999999
Q ss_pred HHHHHHHHHHH
Q 016124 378 KKRLSNLRMKY 388 (394)
Q Consensus 378 ~~~a~~~~~~~ 388 (394)
|++++.+.=..
T Consensus 1657 feRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1657 FERVIELKLSI 1667 (1710)
T ss_pred HHHHHhcCCCh
Confidence 99998865433
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.6e-07 Score=73.66 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc-------cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124 189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 261 (394)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 261 (394)
...-|..+++.|+|..|...|++++.......+.+.. ....++.|++.++.++++|.+|+....+++.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---- 286 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---- 286 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence 3557889999999999999999999887644322211 13457889999999999999999999999983
Q ss_pred cCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 016124 262 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 341 (394)
Q Consensus 262 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~ 341 (394)
.|....+++.-|.++...|+++.|+..|++++++. |++ ..+...|..+..+...+..+..++|.+++.
T Consensus 287 ----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~N---ka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 287 ----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-----PSN---KAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred ----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778899999999999999999999999999865 444 334445555555444444355667776665
Q ss_pred H
Q 016124 342 I 342 (394)
Q Consensus 342 ~ 342 (394)
-
T Consensus 355 k 355 (397)
T KOG0543|consen 355 K 355 (397)
T ss_pred c
Confidence 3
No 171
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=2.1e-05 Score=73.74 Aligned_cols=229 Identities=14% Similarity=0.026 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
|.....|..........++.++|.+.+++|+....- ....+...+|..+-++...-|.-+.-.+.|++|.+.+.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~---REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINF---REEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc---chhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc---
Confidence 444445666666778889999999999999876411 11222233333333334444566667778888877642
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
+ ..++..|..+|...+++++|.++++..++-+.+. ..+|...+..+.++++-+.|...+.+|+.
T Consensus 1529 ----~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1529 ----A--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred ----h--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 2 2467788899999999999999999998876532 45667788999999999999999999998
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHH
Q 016124 215 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 294 (394)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (394)
...+ ..........|.+-++.|+.+.+..+|+..+. .+|.....|..+...-...|+.+.+..+|+
T Consensus 1593 ~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1593 SLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred hcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 6543 12344556678888999999999999998876 456677778888888888899999999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124 295 EALYIREIAFGKDSLPVGEALDCLVSIQTRL 325 (394)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (394)
+++... -.+..+..++..-.-|.+.
T Consensus 1659 Rvi~l~------l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1659 RVIELK------LSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHhcC------CChhHhHHHHHHHHHHHHh
Confidence 988753 2233344444444444443
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.76 E-value=5.9e-08 Score=59.44 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 233 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 233 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
.+|..+...|++++|+..|++++. .+|....++..+|.++..+|++++|+..|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 578999999999999999999987 568899999999999999999999999999998754
No 173
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=4.5e-06 Score=61.83 Aligned_cols=205 Identities=15% Similarity=0.064 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124 54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 133 (394)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 133 (394)
+...+..++..|..|-..|-+.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4467778889999999999999999999999987 6778899999999999999999999999999886
Q ss_pred hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH-HH
Q 016124 134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE-EC 212 (394)
Q Consensus 134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~a 212 (394)
+|..-.+..|.|..+.--|++.-|.+-+.+-.+. ++.+|... .|.. +-...-++.+|...+. ++
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLY---l~E~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLY---LNEQKLDPKQAKTNLKQRA 193 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHH---HHHhhCCHHHHHHHHHHHH
Confidence 4555567788899999999999999887765542 23333322 1111 1223345666665443 22
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHH
Q 016124 213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 292 (394)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (394)
....+. ...+..+-..+|.+-. + ..++++..-.... ..-......+++.||..+...|+.++|..+
T Consensus 194 ~~~d~e-----~WG~~iV~~yLgkiS~-----e---~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~L 259 (297)
T COG4785 194 EKSDKE-----QWGWNIVEFYLGKISE-----E---TLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATAL 259 (297)
T ss_pred HhccHh-----hhhHHHHHHHHhhccH-----H---HHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 222111 1111112222222211 1 1222222211100 000112346788999999999999999999
Q ss_pred HHHHHHH
Q 016124 293 VLEALYI 299 (394)
Q Consensus 293 ~~~a~~~ 299 (394)
|+-++.-
T Consensus 260 fKLaian 266 (297)
T COG4785 260 FKLAVAN 266 (297)
T ss_pred HHHHHHH
Confidence 9988763
No 174
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.73 E-value=5.4e-05 Score=68.07 Aligned_cols=264 Identities=14% Similarity=0.047 Sum_probs=159.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcC-CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 139 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 139 (394)
....++......++.+|..+..++......... ......+......|.+....|++++|+++.+.++...... ...
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~ 494 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYR 494 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cch
Confidence 344567778889999999998887765433110 0111233344445778889999999999999999875432 223
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
....++..+|.+..-.|++++|..+..++.++.+.. ........+....+.++..+|+... ..-.++.......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~----~~~~l~~~~~~~~s~il~~qGq~~~--a~~~~~~~~~~~q 568 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH----DVYHLALWSLLQQSEILEAQGQVAR--AEQEKAFNLIREQ 568 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHH
Confidence 345677889999999999999999999999998763 3334444555777889999993322 2222332222222
Q ss_pred hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
.....+.........+.++...-+++.+..-....+...... ..++.. .-.+..|+.+....|++++|...+.+...
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222222211122222233333333666666655555543222 112222 22335899999999999999999998887
Q ss_pred HHHHHcCCCChhH-HHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124 299 IREIAFGKDSLPV-GEALDCLVSIQTRLGEDDTKLLELLKR 338 (394)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~A~~~~~~ 338 (394)
...... .++.. +.+.......+..+|+.+ +|.....+
T Consensus 647 l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~-~a~~~l~~ 684 (894)
T COG2909 647 LLLNGQ--YHVDYLAAAYKVKLILWLAQGDKE-LAAEWLLK 684 (894)
T ss_pred HhcCCC--CCchHHHHHHHhhHHHhcccCCHH-HHHHHHHh
Confidence 764421 22222 222333334455667766 55555544
No 175
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.72 E-value=3.9e-05 Score=67.52 Aligned_cols=210 Identities=15% Similarity=0.172 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHH------HHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRV------INVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
..|-.-|.+|....++++|+++|++. +++.+-.++ ...+..--..|.-+...|+++.|+.+|-++-...+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 34556677888888899999888763 443322211 233334445577778888888888887655333221
Q ss_pred hc---C--------------CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH
Q 016124 91 NR---G--------------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 153 (394)
Q Consensus 91 ~~---~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 153 (394)
+. + .+.......|..++.-|...|+|+.|+++|.++-.. ..-..+|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~ 802 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG 802 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence 10 0 011122234555677788888888888887765321 12234677
Q ss_pred HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHhhC------
Q 016124 154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKG------ 221 (394)
Q Consensus 154 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~~------ 221 (394)
..|++++|.++.++.. ++ ......|...+.-+...|++.+|..+| .+++.++.+..-
T Consensus 803 k~~kw~da~kla~e~~---------~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH---------GP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred ccccHHHHHHHHHHhc---------Cc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence 7788888777665542 12 223445566666677777777776665 345555443321
Q ss_pred ---CCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 222 ---KEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 222 ---~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
..|++ ...+...+|.-+...|+...|...|-++-+
T Consensus 872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 12222 345667788888999999999988877644
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.72 E-value=2.2e-05 Score=60.37 Aligned_cols=170 Identities=16% Similarity=0.089 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124 142 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 221 (394)
Q Consensus 142 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 221 (394)
+..+++-|......|++++|...|+..... .|..+..-.+...++..+.+.+++++|+...++-+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----- 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----- 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----
Confidence 345777888889999999999999998753 34455556777899999999999999999999888763
Q ss_pred CCCccHHHHHHHHHHHHHHc-----ccH---HHHHHHHHHHHHHHHhhcCCCCCcchHH--------------HHHHHHH
Q 016124 222 KEHPSFVTHLLNLAASYSRS-----KNF---VEAERLLRICLDIMTKTVGPDDQSISFP--------------MLHLGIT 279 (394)
Q Consensus 222 ~~~~~~~~~~~~la~~~~~~-----g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~la~~ 279 (394)
+.||+...+++..|..+... .+. .+|+.-|+..+.-+ |+++....+ -..+|..
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888776543 223 34444444444432 333332222 2356889
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124 280 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 334 (394)
Q Consensus 280 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~ 334 (394)
|.+.|.+-.|+.-++..++.. ++.+.+..++..+..+|..+|-.+ +|..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~-~a~~ 225 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTD-EAKK 225 (254)
T ss_pred HHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChH-HHHH
Confidence 999999999999999998866 566777889999999999999887 6654
No 177
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.9e-05 Score=59.31 Aligned_cols=191 Identities=11% Similarity=0.091 Sum_probs=130.9
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
...+.++.+..-|+.|....+++.|=..|.++-+...+.. +..+.+.++...+.+|.+ ++..+|...++++++++..
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHh
Confidence 3455677888889999999999999999999988876642 334566777777777765 5999999999999999877
Q ss_pred hcCCCCcchHhhhHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 169 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 169 (394)
.. .-...+.-+..+|.+|... .++++|+.+|+++-+.+..- ......-.++...+..-...++|.+|+..|++..
T Consensus 106 ~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 106 MG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred hh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 2233455677899999776 89999999999999987542 1112223455666777778899999999999987
Q ss_pred HHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016124 170 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 211 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (394)
...-... --....-.-+..-|.++....+.-.+...+++
T Consensus 182 ~~s~~n~---LLKys~KdyflkAgLChl~~~D~v~a~~ALek 220 (288)
T KOG1586|consen 182 RSSLDNN---LLKYSAKDYFLKAGLCHLCKADEVNAQRALEK 220 (288)
T ss_pred HHhccch---HHHhHHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence 6532210 00011111223445556555665444444443
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=98.71 E-value=3.6e-07 Score=65.08 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=86.0
Q ss_pred cCCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124 8 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 87 (394)
Q Consensus 8 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 87 (394)
+..-+++..+..+..|.-++..|++++|..+|+-..-. ++...+.+..||.++..+++|++|+..|..+..+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677788899999999999999999999765443 2333456889999999999999999999998876
Q ss_pred HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH
Q 016124 88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 128 (394)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 128 (394)
. +..+...+..|.|+..+|+.+.|...|..++.
T Consensus 101 ~--------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 L--------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred c--------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2 23334577899999999999999999999887
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.70 E-value=1.2e-07 Score=58.10 Aligned_cols=59 Identities=19% Similarity=0.381 Sum_probs=53.8
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
.+|..+...|++++|+..|++++.. .|....++..+|.++..+|++++|+..|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999874 6788999999999999999999999999999986
No 180
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.69 E-value=3.2e-06 Score=56.95 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=86.3
Q ss_pred hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 182 (394)
Q Consensus 103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 182 (394)
+-.-|......|+.+.|++.|.+++.++ |..+.+|++.+..+.-+|+.++|+.-+++++++. ++..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa------g~~t 111 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA------GDQT 111 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc------Cccc
Confidence 3445778889999999999999999884 5567789999999999999999999999999985 4455
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124 183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLI 215 (394)
Q Consensus 183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 215 (394)
.....++...|.+|..+|+.+.|..-|+.+-++
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 666788899999999999999999999988765
No 181
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.66 E-value=1.3e-06 Score=58.88 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH
Q 016124 273 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 352 (394)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~ 352 (394)
+-.-|......|+.+.|++.|.+++.+. |..+.+|++-+..+.-+|+.+ +|++-+.+++++. |+...
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e-~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDE-EALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChH-HHHHHHHHHHHhc----Cccch
Confidence 3445777888999999999999999877 666778999999999999999 9999999999874 44555
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 353 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 353 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
....++...|.+|..+|+.+.|..-|+.+..++.++.
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 6677888999999999999999999999999987764
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.65 E-value=1.3e-06 Score=67.68 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124 231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 310 (394)
Q Consensus 231 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 310 (394)
.++.|.-+...|+|..|...|...++-+ ++++....+++.||++++.+|++++|...|..+.+-. |++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 6778888899999999999999988844 6778889999999999999999999999999998855 78888
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 016124 311 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 343 (394)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~ 343 (394)
..+++..||.+...+|+.+ +|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d-~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTD-EACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHC
Confidence 8899999999999999999 9999999998754
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.63 E-value=3.5e-06 Score=74.02 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=94.3
Q ss_pred HHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchh--------HHHHHHHHHHHH
Q 016124 19 LLHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK--------KAVEIYHRVITI 87 (394)
Q Consensus 19 ~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~ 87 (394)
++..|..+... ++..+|+.+|++++++ +|..+.++..++.++.....+. .+.....+++.+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 45566666544 4478999999999987 3566667777777665543333 222222222221
Q ss_pred HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016124 88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 167 (394)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 167 (394)
+..+....++..+|......|++++|...+++|+.+ .+. ..++..+|.++...|++++|++.|++
T Consensus 414 ------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 414 ------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred ------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123334577888899999999999999999999987 233 56899999999999999999999999
Q ss_pred HHHH
Q 016124 168 ALRV 171 (394)
Q Consensus 168 a~~~ 171 (394)
|+.+
T Consensus 479 A~~L 482 (517)
T PRK10153 479 AFNL 482 (517)
T ss_pred HHhc
Confidence 9985
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.62 E-value=4.5e-05 Score=58.70 Aligned_cols=170 Identities=13% Similarity=0.071 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124 187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 266 (394)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 266 (394)
..+.+-|......|++++|...|+..... -+..|..-.+...++..+.+.+++++|+...++-+..+ |.|
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~~ 104 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PTH 104 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CCC
Confidence 44578888899999999999999987642 23445567788899999999999999999999988854 678
Q ss_pred CcchHHHHHHHHHHHhh-----cChH---HHHHHHHHHHHHHHHHcCCCChhHHH--------------HHHHHHHHHHH
Q 016124 267 QSISFPMLHLGITLYHL-----NRDK---EAEKLVLEALYIREIAFGKDSLPVGE--------------ALDCLVSIQTR 324 (394)
Q Consensus 267 ~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~ 324 (394)
|+...+++..|.++... .+.. +|...++..+..+ |+++-... --..+|..|.+
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k 179 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYLK 179 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887643 2333 3444444444433 44432211 12357889999
Q ss_pred hCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhh
Q 016124 325 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL 377 (394)
Q Consensus 325 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 377 (394)
.|.+. .|+..++.+++-+. +.+....++..+..+|...|-.++|...
T Consensus 180 r~~~~-AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 180 RGAYV-AAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred hcChH-HHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999 99999999887643 3466678889999999999999988764
No 185
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00011 Score=56.66 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=145.9
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 98 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 98 (394)
++.+- -++-.|+|..++..-.+.-. . +........+.+.|..+|.+...+.-...+ ..+
T Consensus 12 LF~iR-n~fY~Gnyq~~ine~~~~~~-------~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~----------~~~- 70 (299)
T KOG3081|consen 12 LFNIR-NYFYLGNYQQCINEAEKFSS-------S--KTDVELDVYMYRAYLALGQYQIVISEIKEG----------KAT- 70 (299)
T ss_pred HHHHH-HHHHhhHHHHHHHHHHhhcc-------c--cchhHHHHHHHHHHHHcccccccccccccc----------cCC-
Confidence 34443 34457888777665443321 1 123344556677788888776544322211 111
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
...+...++.....-++.++-+.-..+-+.. ............-|.+|...|++++|++.......+
T Consensus 71 ~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------- 137 (299)
T KOG3081|consen 71 PLQAVRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------- 137 (299)
T ss_pred hHHHHHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------
Confidence 1223334444444444444333333322211 112222234445578899999999999988773322
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH----cccHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRIC 254 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 254 (394)
.+...-..++.+..+.+-|...+++..++.+. .++..||..+.. .+...+|.-+|++.
T Consensus 138 --------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 138 --------EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 11122345677788888888888877665322 234455555543 24566666666654
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHH
Q 016124 255 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 334 (394)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~ 334 (394)
-+ ..+.+...+...+.++..+|++++|...++.++... +....++.++..+-...|... ++.+
T Consensus 200 s~--------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~-~~~~ 262 (299)
T KOG3081|consen 200 SE--------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDA-EVTE 262 (299)
T ss_pred hc--------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCCh-HHHH
Confidence 32 245566788899999999999999999999998733 344567888888888899876 5554
Q ss_pred HHH
Q 016124 335 LLK 337 (394)
Q Consensus 335 ~~~ 337 (394)
-+-
T Consensus 263 r~l 265 (299)
T KOG3081|consen 263 RNL 265 (299)
T ss_pred HHH
Confidence 443
No 186
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.60 E-value=1.5e-05 Score=61.35 Aligned_cols=241 Identities=14% Similarity=0.122 Sum_probs=161.1
Q ss_pred hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q 016124 72 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 151 (394)
Q Consensus 72 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 151 (394)
.+.++|+..|++++++- +.....-..++-.+..+++.+|+|++-+..|.+.+...+.....+.... +.+++-..
T Consensus 41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH
Confidence 47889999999999873 2223344567788889999999999999999999988776654443322 22333332
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC----ccH
Q 016124 152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH----PSF 227 (394)
Q Consensus 152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~ 227 (394)
-....+.+--.++|+..++..+.. .+...+...-..+|.+|+..|+|.+-...+++....++...|.++ ...
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdA----KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL 190 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDA----KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL 190 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhh----hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence 234455556666777777666543 233344445567999999999999988888887777665555443 234
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIREIAFGK 306 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 306 (394)
..++..-..+|..+.+..+-..+|++++.+...+ .||.+..+.. .=|..+.+.|+|++|-.-|-+|.+-+.+...|
T Consensus 191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp 267 (440)
T KOG1464|consen 191 LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP 267 (440)
T ss_pred hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc
Confidence 5556566778888888888888999999875444 4555443333 33567788899999988888887766553221
Q ss_pred CChhHHHHHHHHHHHHHHhC
Q 016124 307 DSLPVGEALDCLVSIQTRLG 326 (394)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~g 326 (394)
.....--+..|+..+.+.|
T Consensus 268 -RRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 268 -RRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred -chhHHHHHHHHHHHHHHcC
Confidence 1222233455677776665
No 187
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=4.9e-07 Score=69.89 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCH
Q 016124 273 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 352 (394)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~ 352 (394)
.++.|.-+...|+|.+|...|..-++.+ |+.+....++++||.++..+|+++ .|...|..+..-+ +.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~-~Aa~~f~~~~k~~-----P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYE-DAAYIFARVVKDY-----PKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccch-HHHHHHHHHHHhC-----CCCC
Confidence 6788888999999999999999988866 788888999999999999999999 9999999988743 5677
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124 353 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 353 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
...+++..||.+....|+.++|...|+++++-.+.
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 88899999999999999999999999999875543
No 188
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.57 E-value=0.00023 Score=57.92 Aligned_cols=256 Identities=18% Similarity=0.100 Sum_probs=145.4
Q ss_pred HHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHh---cccCCCc-hHH
Q 016124 110 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKD---SNYMSLD-DSI 184 (394)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~---~~~~~~~-~~~ 184 (394)
....|+++.|..++.++-.......+......+..++++|......+ ++++|..+++++.+++.. .....++ ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887642222223346778899999999999 999999999999999744 2112222 245
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124 185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 264 (394)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 264 (394)
...++..++.+|...+.++.... ..+++...+...+ ++|.. +..--.+..+.++.+++.+.+.+++...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~---~~L~l~il~~~~~~~~~~~~L~~mi~~~------ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEV---FLLKLEILLKSFDEEEYEEILMRMIRSV------ 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHH---HHHHHHHHhccCChhHHHHHHHHHHHhc------
Confidence 67788899999999888764443 3344444444332 33332 2122233333788888888888887632
Q ss_pred CCC-cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHhCC--Cc-hHHHHHHHHH
Q 016124 265 DDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGE--DD-TKLLELLKRV 339 (394)
Q Consensus 265 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~-~~A~~~~~~a 339 (394)
+.+ ...........-+. ......|...+...+... +.+. ++ ..... .+..++...+. .. .+-++..+..
T Consensus 152 ~~~e~~~~~~l~~i~~l~-~~~~~~a~~~ld~~l~~r---~~~~-~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~ 225 (278)
T PF08631_consen 152 DHSESNFDSILHHIKQLA-EKSPELAAFCLDYLLLNR---FKSS-EDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEEL 225 (278)
T ss_pred ccccchHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHH---hCCC-hhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHH
Confidence 111 11111111111112 233456666666655432 1111 22 22211 22223333221 12 0114444444
Q ss_pred HHHHHhhcC-CCCHHHH----HHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124 340 LRIQEREFG-SESEEVM----LTLKKVVSYLDKLGRKEEKFPLKKRLS 382 (394)
Q Consensus 340 l~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~ 382 (394)
+....+..+ +-.+... ..+-+.|.-..+.++|++|..+|+-++
T Consensus 226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 443333222 2333332 334455788889999999999999776
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=98.57 E-value=1.1e-06 Score=62.77 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124 54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 133 (394)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 133 (394)
++......+..|.-++..|++++|...|+-..-. ++.....+..||.++..+++|++|+..|..+..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3567778889999999999999999999876543 34456678999999999999999999999988763
Q ss_pred hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
.++|. ..+..|.++...|+.+.|...|+.++.
T Consensus 102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 23332 367889999999999999999999987
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.51 E-value=9.6e-06 Score=71.31 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHH--------HHHHHHHHHHH
Q 016124 60 SLLGMAKVLGSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESVFSRILK 128 (394)
Q Consensus 60 ~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~ 128 (394)
-++..|..+... +++..|+.+|++|+++ +|+.+.++..++.++.....+. .+.....+++.
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 344455555544 4478999999999987 6777888888777775543322 23333333222
Q ss_pred HHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHH
Q 016124 129 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 208 (394)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 208 (394)
+ +..+....++..+|......|++++|...+++|+++. ++ ...+..+|.++...|++++|++.
T Consensus 413 l------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-------ps----~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 413 L------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-------MS----WLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred c------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CC----HHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 1122234667778888888999999999999999852 22 35778999999999999999999
Q ss_pred HHHHHHH
Q 016124 209 LEECLLI 215 (394)
Q Consensus 209 ~~~a~~~ 215 (394)
|++|+.+
T Consensus 476 ~~~A~~L 482 (517)
T PRK10153 476 YSTAFNL 482 (517)
T ss_pred HHHHHhc
Confidence 9999886
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=6.5e-06 Score=69.07 Aligned_cols=120 Identities=24% Similarity=0.168 Sum_probs=99.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016124 191 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 270 (394)
Q Consensus 191 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 270 (394)
.+..++...++++.|+.++++..+ .+|.. ...++.++...++..+|++.+.+++. ..|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~--------~~pev---~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRE--------RDPEV---AVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHh--------cCCcH---HHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCH
Confidence 345566677899999999988654 24543 44589999999999999999999986 345567
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124 271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 338 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 338 (394)
..+...+..+...++++.|++..++++... |....+|..|+.+|...|+++ .|+..+..
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e-~ALlaLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFE-NALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHH-HHHHHHhc
Confidence 888889999999999999999999999865 777789999999999999999 89876653
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=7.4e-06 Score=68.77 Aligned_cols=120 Identities=19% Similarity=0.135 Sum_probs=98.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccH
Q 016124 148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 227 (394)
Q Consensus 148 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 227 (394)
+-..+...++++.|+..+++..+. .|+ +...++.++...++..+|+..+.+++. ..|..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~-------~pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d 233 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER-------DPE------VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQD 233 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc-------CCc------HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCC
Confidence 445566778999999999987652 121 224589999999999999999999985 34555
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 296 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (394)
...+...+..+...++++.|+...+++..+ .|....+|..|+.+|...|++++|+..+..+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 778888999999999999999999999984 5778889999999999999999999877643
No 193
>PRK11906 transcriptional regulator; Provisional
Probab=98.50 E-value=1.3e-05 Score=67.12 Aligned_cols=162 Identities=17% Similarity=0.062 Sum_probs=115.9
Q ss_pred HHHHHHHHHhhh---chHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh---------hchhHHHHHHHHHHH
Q 016124 19 LLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVIT 86 (394)
Q Consensus 19 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~ 86 (394)
++..|......+ ....|+.+|.+++.. .+-+|..+.++..++.+++.. ....+|....++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 355565554443 346778888888843 123577788888888888654 234456666667766
Q ss_pred HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016124 87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 166 (394)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 166 (394)
+ ++..+.++..+|.+....++++.|...|++|+.+ +|..+.++...|.+....|+.++|.+.++
T Consensus 333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 5667789999999999999999999999999987 67788899999999999999999999999
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 016124 167 KALRVIKDSNYMSLDDSIMENMRIDLAE-LLHIVGRGQEGRELLEE 211 (394)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 211 (394)
+++++. |.. .......+-. .|+ ....+.|+.+|-+
T Consensus 397 ~alrLs-------P~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLE-------PRR--RKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHhccC-------chh--hHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 999853 221 1212222222 333 4456777777654
No 194
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.48 E-value=0.00042 Score=56.43 Aligned_cols=255 Identities=17% Similarity=0.141 Sum_probs=145.4
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHh-c-CCCCc----c
Q 016124 26 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN-R-GTESA----D 98 (394)
Q Consensus 26 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~-~-~~~~~----~ 98 (394)
...+|+++.|..++.++-.......+......+..+++.|......+ ++++|..+++++.++.+.. . ...++ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999877642222233467888999999999999 9999999999999997551 1 11222 3
Q ss_pred hHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 99 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
...++..++.+|...+.++...+ ..++++..+.-++ ++|.... .. -.+....++.+++.+.+.+++....-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~-l~il~~~~~~~~~~~~L~~mi~~~~~---- 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LK-LEILLKSFDEEEYEEILMRMIRSVDH---- 153 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HH-HHHHhccCChhHHHHHHHHHHHhccc----
Confidence 45678889999999988765444 4445555544332 3333321 11 12233378899999999888875321
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcc--cHHHH--HHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSK--NFVEA--ERLLRI 253 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g--~~~~A--~~~~~~ 253 (394)
++.+. ..+ .....-+.. .....|...+...+...- . ..++ ..... -+..++...+ +.... ++....
T Consensus 154 -~e~~~-~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~--~--~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~ 224 (278)
T PF08631_consen 154 -SESNF-DSI-LHHIKQLAE-KSPELAAFCLDYLLLNRF--K--SSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEE 224 (278)
T ss_pred -ccchH-HHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHh--C--CChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHH
Confidence 11111 111 111111122 234566666666554321 1 1111 22221 1222222222 22222 334444
Q ss_pred HHHHHHhhcCC-CCCcch----HHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 254 CLDIMTKTVGP-DDQSIS----FPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 254 a~~~~~~~~~~-~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
.+....+..+. -++... ..+.+.|...+..++|++|..+|+-++.
T Consensus 225 ~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 225 LLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 44433333222 222221 2345668888999999999999997763
No 195
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.47 E-value=5.4e-05 Score=58.38 Aligned_cols=225 Identities=15% Similarity=0.129 Sum_probs=145.9
Q ss_pred CCCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124 9 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 88 (394)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 88 (394)
+.....-..++-.+..+++..|+|++-...|.+.+...+.....+.... +.+.+-..-....+.+--..+|+..+...
T Consensus 58 gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDyiStS~~m~LLQ~FYeTTL~AL 135 (440)
T KOG1464|consen 58 GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDYISTSKNMDLLQEFYETTLDAL 135 (440)
T ss_pred cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3344444566778888999999999999999999887765433332211 11122121222333444455666666655
Q ss_pred HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHHHHCCCHHHHHHH
Q 016124 89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVEL 164 (394)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~ 164 (394)
+... +.......-..||.+|+..|+|.+-.+.+.+.-..++.--|.++. ....+|..-..+|..+.+-.+-..+
T Consensus 136 kdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~l 213 (440)
T KOG1464|consen 136 KDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKAL 213 (440)
T ss_pred Hhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHH
Confidence 5432 333444556679999999999999888888877777654444332 3455666667788888888888889
Q ss_pred HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc
Q 016124 165 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 242 (394)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 242 (394)
|++++.+-... |.+..+..+...=|..+.+.|++++|-.-|-+|.+-+.+.+.+ ......-+..||..+++.|
T Consensus 214 YeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 214 YEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chhHHHHHHHHHHHHHHcC
Confidence 99999876543 4554555555555777888999999998888887766554422 1223333555677776655
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.47 E-value=8.6e-05 Score=53.84 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 308 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 308 (394)
.-...||......|++.+|...|++++. +-.......+..+++..+..+++..|...+++..+... ....
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals-------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p---a~r~ 159 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS-------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP---AFRS 159 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc-------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---ccCC
Confidence 4456788888888999999999888876 22334455677888888888998888888887665321 1111
Q ss_pred hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Q 016124 309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 382 (394)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 382 (394)
| .....++.++...|.+. +|...|+.++..+. + .......+..+.++|+..+|..-+....
T Consensus 160 p---d~~Ll~aR~laa~g~~a-~Aesafe~a~~~yp-----g----~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 160 P---DGHLLFARTLAAQGKYA-DAESAFEVAISYYP-----G----PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred C---CchHHHHHHHHhcCCch-hHHHHHHHHHHhCC-----C----HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 24567788888888888 88888888887532 1 2334445778888888877766554443
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.5e-06 Score=64.68 Aligned_cols=106 Identities=18% Similarity=0.057 Sum_probs=86.5
Q ss_pred CCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHH
Q 016124 265 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG--EDDTKLLELLKRVLRI 342 (394)
Q Consensus 265 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~~A~~~~~~al~~ 342 (394)
.+|.....|..||.+|..+|+++.|...|.+|+++. +++|+ .+..+|.++..+. ....++...+++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~---~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPE---ILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 468888999999999999999999999999999976 55554 4666666655443 3334888999999863
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124 343 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 386 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 386 (394)
+|....++..||..+..+|++.+|...++..++..+
T Consensus 223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 566788899999999999999999999999987643
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=8.6e-06 Score=63.99 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=93.3
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITI 87 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~ 87 (394)
.+|..+.-|..||.+|..+|+++.|...|.+++++. ++. ...+..+|.++.... ...++...+++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n---~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDN---PEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 467777889999999999999999999999999984 233 345556676665543 456888999999886
Q ss_pred HHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 016124 88 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 150 (394)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 150 (394)
+|....+.+.||..++..|+|.+|...++..++.. +++.|....+-..++.
T Consensus 223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~ 273 (287)
T COG4235 223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIAR 273 (287)
T ss_pred --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHH
Confidence 66778899999999999999999999999998863 4455555444444443
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.46 E-value=7.7e-05 Score=54.09 Aligned_cols=136 Identities=19% Similarity=0.186 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124 58 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137 (394)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 137 (394)
..-...+|......|++.+|..+|++++.- --......+..++...+..+++..|...+++..+.-..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa----- 156 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA----- 156 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-----
Confidence 345667899999999999999999998763 12334567788999999999999999999888765211
Q ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 217 (394)
Q Consensus 138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 217 (394)
.........+|..+...|++.+|...|+.++..+. ++. .....+..+..+|+.++|..-+....+...
T Consensus 157 -~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-------g~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 157 -FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-------GPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred -cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-------CHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 11223455678999999999999999999998652 221 224467788899999998887766655443
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.44 E-value=1.1e-05 Score=56.33 Aligned_cols=90 Identities=17% Similarity=0.015 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 307 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 307 (394)
...++.-|.-.+..|+|++|++.|+.....+ +..+....+...|+.+|...|++++|+..+++-+++. |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 4567788899999999999999998876632 4456667888999999999999999999999999876 89
Q ss_pred ChhHHHHHHHHHHHHHHhCC
Q 016124 308 SLPVGEALDCLVSIQTRLGE 327 (394)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~g~ 327 (394)
||.+.-+++..|.++..+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CCCccHHHHHHHHHHHHHhh
Confidence 99998999999988887754
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.43 E-value=2.2e-05 Score=54.83 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC
Q 016124 188 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 267 (394)
Q Consensus 188 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 267 (394)
.+..-|......|+|++|++.++...... +..+....+...|+.+|...+++++|+..+++.+++ .|.||
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCC
Confidence 34778899999999999999998765532 244556678889999999999999999999999985 47899
Q ss_pred cchHHHHHHHHHHHhhcC---------------hHHHHHHHHHHHHHH
Q 016124 268 SISFPMLHLGITLYHLNR---------------DKEAEKLVLEALYIR 300 (394)
Q Consensus 268 ~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~a~~~~ 300 (394)
.+..+++..|.++..+.. ..+|...|++.++.+
T Consensus 82 ~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 999999999999888765 566777777666654
No 202
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=0.0011 Score=58.87 Aligned_cols=212 Identities=14% Similarity=0.029 Sum_probs=117.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH------HHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016124 145 MCSLAHAKCANGNAEEAVELYKK------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 218 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 218 (394)
|-.-|.+|....++++|+++|++ ++++.+-. -+..+...-...|..+...|+++.|+..|-++-...+.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 44556777777888888888765 44443321 22333344456778888899999998887655332211
Q ss_pred h---hC-CCCcc-------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 016124 219 Y---KG-KEHPS-------------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 281 (394)
Q Consensus 219 ~---~~-~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 281 (394)
+ .+ ...+. ....|-.++.-|...|+|+-|.++|.++-.. ..-...|-
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~ 802 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG 802 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence 1 11 01111 1122334567777778888887777654220 11223566
Q ss_pred hhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc------------hHHHHHHHHHH--HHHHhhc
Q 016124 282 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD------------TKLLELLKRVL--RIQEREF 347 (394)
Q Consensus 282 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------------~~A~~~~~~al--~~~~~~~ 347 (394)
+.|+|.+|.++-+++. ++ ..+...+..-+.-....|++. .+|+.+|.+.- .-.-++.
T Consensus 803 k~~kw~da~kla~e~~-------~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH-------GP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred ccccHHHHHHHHHHhc-------Cc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH
Confidence 6777777766555432 12 223333444444444444444 05555554421 0001112
Q ss_pred CCCCHH-HHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124 348 GSESEE-VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 386 (394)
Q Consensus 348 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 386 (394)
+..|++ ..++...+|.-|...|+..+|...|-++-+.+.
T Consensus 874 ~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ka 913 (1636)
T KOG3616|consen 874 EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKA 913 (1636)
T ss_pred HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHH
Confidence 223333 346778889999999999999998887766544
No 203
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1.4e-05 Score=58.39 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 223 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 223 (394)
.+-.-|.-++..|+|++|..-|..|++++... .......++.+.|.+...++.++.|+.-+.+++++
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-------- 163 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPST-----STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-------- 163 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence 34556788899999999999999999998643 33555667889999999999999999999999986
Q ss_pred CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
.|....++...+.+|.+...+++|++-|++.++.
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5667778888999999999999999999998873
No 204
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=1.9e-05 Score=57.76 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
+..+-.-|+-++..|+|.+|..-|..|+.+++... ......++.+.|.+...++.++.|+.-+.+++++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-------- 163 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-------- 163 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence 44456678899999999999999999999986532 2355667888999999999999999999999998
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
.|....++...+.+|..+..|++|+.-|.+.++.
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5667788888899999999999999999998876
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.38 E-value=3.6e-06 Score=70.31 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=63.7
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
..|.....++++|..|...|+|++|+..|++++++ .+++.....+++++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999998 3444444467999999999999999999999999986
No 206
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.0001 Score=61.69 Aligned_cols=320 Identities=11% Similarity=0.047 Sum_probs=176.4
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH-------h
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL-------N 91 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~ 91 (394)
+...+..-+..+.|+....+.+..-.+- .++..+. ++.--..|+..|.+... ...++...+-.. .
T Consensus 20 l~~~a~~~f~~~~~d~cl~~l~~l~t~~-----~~~~~v~--~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~ 91 (696)
T KOG2471|consen 20 LLCQAHEQFNNSEFDRCLELLQELETRG-----ESSGPVL--HNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVS 91 (696)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHhcc-----cccccee--eehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchh
Confidence 4455666778889998888776654432 2211111 22223334444544322 222222221111 1
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
.+-+.......+++.|.+++....+..|+..........+... ...........-..+....+-++|+.++.-.-++
T Consensus 92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~ 168 (696)
T KOG2471|consen 92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI 168 (696)
T ss_pred cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333455778889999999999999988777666544331 1222223334445566667778887766544333
Q ss_pred HHhc--ccCCCc----------hHHHH-----------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124 172 IKDS--NYMSLD----------DSIME-----------NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 228 (394)
Q Consensus 172 ~~~~--~~~~~~----------~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 228 (394)
.... ...+.. ++..+ .+.......+....+..-+..-.+-++.+ ..+..
T Consensus 169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--------a~~s~ 240 (696)
T KOG2471|consen 169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--------AQDSS 240 (696)
T ss_pred HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--------cCCCc
Confidence 2211 000000 00000 01111112222222222222222222211 11334
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcch--HHHHHHHHHHHhhcChHHHHHHHHHHHH-HHHHHcC
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS--FPMLHLGITLYHLNRDKEAEKLVLEALY-IREIAFG 305 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~ 305 (394)
.++...+..+...|++.+|.+.+... .+.+...+...|... ..+.++|.+++..|.|.-+..+|.+|++ ...+.-.
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 45666788899999999999887643 222222222233322 3457899999999999999999999996 4333321
Q ss_pred CCC---------hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 016124 306 KDS---------LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK 367 (394)
Q Consensus 306 ~~~---------~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 367 (394)
.-. .....++++.|..+...|++. .|.++|.+++..+.+ . +..|..+|.++..
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl-~AfqCf~~av~vfh~-----n---PrlWLRlAEcCim 381 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL-LAFQCFQKAVHVFHR-----N---PRLWLRLAECCIM 381 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcH-HHHHHHHHHHHHHhc-----C---cHHHHHHHHHHHH
Confidence 111 122567889999999999999 999999999998754 2 3567778877654
No 207
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.00099 Score=56.11 Aligned_cols=296 Identities=18% Similarity=0.147 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcc--hHhhhHhHHHHHHHhCcHHHHHHHHHHHHH-HHHHhhC
Q 016124 59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILK-IYTKVYG 135 (394)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~ 135 (394)
.++...+..++..|++.+|.+.+...- +.+...+.-.|. ....++++|.+++..|.|.-+..+|.+|++ .+.....
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 345567888899999999988776432 211111112233 234568999999999999999999999996 4433311
Q ss_pred C--C-------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcC------
Q 016124 136 E--N-------DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG------ 200 (394)
Q Consensus 136 ~--~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------ 200 (394)
. . ......++++.|..|...|++-.|.++|.++...+... + ..|..+|.+.....
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n------P----rlWLRlAEcCima~~~~l~e 389 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN------P----RLWLRLAECCIMALQKGLLE 389 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC------c----HHHHHHHHHHHHHhhhhhhh
Confidence 1 0 11234578999999999999999999999999987653 1 22344444433210
Q ss_pred -------------------------------------------ChHHHHHHHHHHHHHHHHh------------------
Q 016124 201 -------------------------------------------RGQEGRELLEECLLITEKY------------------ 219 (394)
Q Consensus 201 -------------------------------------------~~~~A~~~~~~a~~~~~~~------------------ 219 (394)
-.+=|.-+++.++-+..+.
T Consensus 390 e~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~ 469 (696)
T KOG2471|consen 390 EGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGS 469 (696)
T ss_pred hccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCC
Confidence 0122333444444332100
Q ss_pred ----------------hC-------CCCcc--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124 220 ----------------KG-------KEHPS--------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 268 (394)
Q Consensus 220 ----------------~~-------~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 268 (394)
.| +..|. ...++.+.+.+-...|+.-.|+..-.+.++. +.
T Consensus 470 ~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~~ 540 (696)
T KOG2471|consen 470 SSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------AD 540 (696)
T ss_pred CCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------hh
Confidence 00 01111 1234556677778899999999988888774 33
Q ss_pred chHHHHHHHHHH-----HhhcChHHHHHHHHHHH------H--HHHHHcCC-------------C-------ChhH--HH
Q 016124 269 ISFPMLHLGITL-----YHLNRDKEAEKLVLEAL------Y--IREIAFGK-------------D-------SLPV--GE 313 (394)
Q Consensus 269 ~~~~~~~la~~~-----~~~g~~~~A~~~~~~a~------~--~~~~~~~~-------------~-------~~~~--~~ 313 (394)
...++..||.+| ....+..+|...+.--+ . ....-++. . .++. ..
T Consensus 541 lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v 620 (696)
T KOG2471|consen 541 LSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGV 620 (696)
T ss_pred hhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHH
Confidence 444555555554 45677777777664411 0 00000110 1 1111 33
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124 314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381 (394)
Q Consensus 314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 381 (394)
.+++||.++.-+|+++ +|..++..|..+..+.. .+ .+...--.+-...|+...|...+++.
T Consensus 621 ~~~nLa~a~alq~~~d-qAk~ll~~aatl~hs~v---~~---~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 621 LFANLAAALALQGHHD-QAKSLLTHAATLLHSLV---NV---QATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHHHHhcccH-HHHHHHHHHHHhhhccc---cH---HHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 5778999999999999 99999999988765321 11 11111122345678888888777664
No 208
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.35 E-value=1e-06 Score=48.41 Aligned_cols=41 Identities=32% Similarity=0.279 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124 270 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 310 (394)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 310 (394)
+.++.++|.+|...|++++|..++++++.+.+..+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999985
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00015 Score=55.66 Aligned_cols=176 Identities=17% Similarity=0.187 Sum_probs=128.6
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHhh-------CCCc------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 106 LGSLFIKEGKAVDAESVFSRILKIYTKVY-------GEND------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 106 l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
-+.+....|+..+.+.-+.......+++. .+.+ .....+.+.+..++...|.|.-....+.+.++..
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 35666778888887766655444333221 1111 1234467788889999999999999999998832
Q ss_pred HhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124 173 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 252 (394)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 252 (394)
++..|.+. ..+|++-...|+.+.|..+++..-+...+.. .-.....+..+.+.+|.-.+++..|...+.
T Consensus 208 ------~e~~p~L~---s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 208 ------PEQEPQLL---SGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred ------CcccHHHH---HHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--ccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 23334433 6689999999999999999998766554443 223345567788999999999999999998
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
+.+. .++..+.+..+-|.|..-.|+..+|++.++.++.+.
T Consensus 277 ~i~~--------~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 277 EILR--------MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hccc--------cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8776 345666777889999999999999999999887754
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00059 Score=52.62 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=106.4
Q ss_pred hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124 101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180 (394)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 180 (394)
.+.+.+..++...|.|.-....+.+.++. +++........+|.+-+..|+.+.|..++++.-+..... .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL----~ 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL----D 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh----h
Confidence 45667788888899999999999988873 334444556778899999999999999999776554432 1
Q ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
.-.....+..+.+.++...+++.+|...+.+++.. ++..+.+.++.|.+.+-.|+..+|++.++.++++
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11222345578888999999999999988887753 5566777888999999999999999999888774
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.34 E-value=2.9e-06 Score=70.79 Aligned_cols=72 Identities=7% Similarity=0.034 Sum_probs=63.9
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 87 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 87 (394)
.+|..+..++++|..|+..|+|++|+..|++++.+ .++++....+++++|.+|..+|++++|+..+++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999997 3444444467999999999999999999999999986
No 212
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00059 Score=52.74 Aligned_cols=154 Identities=18% Similarity=0.066 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 140 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 140 (394)
...-|.++...|++++|+........+ .+...--.++.++.+++-|...++++.++-+.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------- 169 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED-------- 169 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------
Confidence 334467888889999998877763222 22222345677888888888888888776322
Q ss_pred HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124 141 VGMAMCSLAHAKC----ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 216 (394)
Q Consensus 141 ~~~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 216 (394)
.++..||..+. ..+++.+|.-+|++.-+.. ++. ...++.++.+...+|++++|...++.++..
T Consensus 170 --~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~------~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~k- 236 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT------PPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDK- 236 (299)
T ss_pred --HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc------CCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 12333444333 3456777887777754421 111 334578899999999999999999999873
Q ss_pred HHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124 217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 255 (394)
Q Consensus 217 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 255 (394)
.+....++.|+..+-...|...++..-+-.-+
T Consensus 237 -------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 237 -------DAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred -------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 45557788888888888888877766554433
No 213
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00074 Score=52.72 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=147.9
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124 63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 142 (394)
Q Consensus 63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 142 (394)
.+++-....+++++|+..|.+.+.-.-........+.-.+...++.+|...|++..--+......+..... ..|...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~ 84 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKIT 84 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHH
Confidence 45666667788999999988877541000000112234567789999999999887666665555544433 234444
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124 143 MAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 221 (394)
Q Consensus 143 ~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 221 (394)
.+...+-..+ .....++.-+..+...++...+. .........-..+...+...|+|.+|+....-.+.-.++..
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D- 159 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD- 159 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-
Confidence 4444333332 34567888888888888876542 11122223335678889999999999999998887776654
Q ss_pred CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP--MLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
+.+.....+..-..+|....+..++...+..+.......+- |....+ -..-|..+....+|.-|..+|-++++-
T Consensus 160 -DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC---Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 160 -DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC---PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred -CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC---CHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 55666666666788888889998888888777665444322 222221 122255666778999999999999886
Q ss_pred HHH
Q 016124 300 REI 302 (394)
Q Consensus 300 ~~~ 302 (394)
+..
T Consensus 236 ft~ 238 (421)
T COG5159 236 FTL 238 (421)
T ss_pred ccc
Confidence 643
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.30 E-value=0.0013 Score=53.89 Aligned_cols=298 Identities=13% Similarity=0.051 Sum_probs=187.8
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch-Hh
Q 016124 23 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL-VL 101 (394)
Q Consensus 23 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~ 101 (394)
|.+....|+-..|..+-.++-.+.. .+.+-.+.. .-+..-.-.|+++.|.+-|+..+. +|+. .-
T Consensus 91 GliAagAGda~lARkmt~~~~~lls----sDqepLIhl--LeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRll 155 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLS----SDQEPLIHL--LEAQAALLEGDYEDARKKFEAMLD---------DPETRLL 155 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhh----ccchHHHHH--HHHHHHHhcCchHHHHHHHHHHhc---------ChHHHHH
Confidence 4444556777777777776655432 233333332 234555678999999999987764 2322 22
Q ss_pred hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124 102 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 181 (394)
Q Consensus 102 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 181 (394)
-+..|-.--...|..+-|..+-+++.... |....+....-...+..|+++.|+++.+....... ..++
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v----ie~~ 223 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV----IEKD 223 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh----hchh
Confidence 23333344457899999999999887753 33344444555667889999999999987765432 1122
Q ss_pred hHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124 182 DSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 260 (394)
Q Consensus 182 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 260 (394)
......+-..-+.... ...+...|.....++.++ .|+....-..-+..+...|+..++-.+++.+.+.
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--- 292 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--- 292 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---
Confidence 2111111111122211 223567777777777664 4555566666788999999999999999988873
Q ss_pred hcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 016124 261 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 340 (394)
Q Consensus 261 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al 340 (394)
..||++.. +|....--+.++.-++++-.+. .-.|+...+....+..-...|++. .|..--+.+.
T Consensus 293 ---ePHP~ia~-------lY~~ar~gdta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~-~ARa~Aeaa~ 356 (531)
T COG3898 293 ---EPHPDIAL-------LYVRARSGDTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFS-AARAKAEAAA 356 (531)
T ss_pred ---CCChHHHH-------HHHHhcCCCcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchH-HHHHHHHHHh
Confidence 35666543 4444444456666677765544 223555667788888888889888 7777666665
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHh-cCchhhhhhHHHHHH
Q 016124 341 RIQEREFGSESEEVMLTLKKVVSYLDKL-GRKEEKFPLKKRLSN 383 (394)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 383 (394)
.+. | ...++..|+.+-... |+-.++..++.+++.
T Consensus 357 r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 357 REA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 432 1 234566777777665 888888888887764
No 215
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.26 E-value=2.6e-06 Score=46.73 Aligned_cols=41 Identities=34% Similarity=0.520 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 268 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 268 (394)
+.++.++|.+|..+|++++|..++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999884
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.26 E-value=0.0026 Score=55.91 Aligned_cols=183 Identities=16% Similarity=0.088 Sum_probs=121.6
Q ss_pred HCCCHHHHHHHHHHHHHHHHhcccCCCchHHH---HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCcc
Q 016124 154 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---ENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS 226 (394)
Q Consensus 154 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 226 (394)
-.|+-+.++..+.++.+. .+-..+.. .-.|+.....+.. ....+.|.+.+..... ..|.
T Consensus 200 F~gdR~~GL~~L~~~~~~------~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--------~yP~ 265 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS------ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--------RYPN 265 (468)
T ss_pred cCCcHHHHHHHHHHHhcc------CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--------hCCC
Confidence 468888899888887651 11222221 1222222222222 2344556666655544 2466
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124 227 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 306 (394)
Q Consensus 227 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 306 (394)
....+...|.++...|+.++|++.+++++....+. ......+++.++.++..+++|++|..++.+..+.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------- 334 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------- 334 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------
Confidence 67778889999999999999999999988532222 1223456789999999999999999999988762
Q ss_pred CChhHHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 016124 307 DSLPVGEALDCLVSIQTRLGED-------DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV 362 (394)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~g~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 362 (394)
+....+...+..|.++...|+. + +|.+++.++-....+..+...|-..-+.....
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~-~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~ 396 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKK-EAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQ 396 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHH-HHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Confidence 2233445566778889999988 7 88899999888887766666564444443333
No 217
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.25 E-value=5.7e-06 Score=51.11 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=46.8
Q ss_pred HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
...|++++|+..|++++.. .|....+...+|.++...|++++|...+.+++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5689999999999999987 5667888999999999999999999999998865
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.24 E-value=0.0015 Score=52.35 Aligned_cols=203 Identities=22% Similarity=0.290 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 97 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 97 (394)
.....+..+...+++..+...+...+.. ...+.....+...+..+...+++..++..+..++.... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 128 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP------DP 128 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Cc
Confidence 3445555566666666666666555542 01233344555566666666666666666666554310 11
Q ss_pred chHhhhHhHHH-HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 98 DLVLPLFSLGS-LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 98 ~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
.......+. ++...|+++.|...+.+++... +............+..+...++++.|+..+.+++......
T Consensus 129 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~- 200 (291)
T COG0457 129 --DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD- 200 (291)
T ss_pred --chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-
Confidence 111222233 6666777777777777664320 0001233334444444666667777777776666653220
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
....+..++..+...+++++|...+..++... +........++..+...+.++++...+.+++.
T Consensus 201 --------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 201 --------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred --------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12334556666666666677776666666542 11233344455555555556666666666655
No 219
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.22 E-value=0.00046 Score=45.89 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=87.1
Q ss_pred HhhhHhHH--HHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124 100 VLPLFSLG--SLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173 (394)
Q Consensus 100 ~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 173 (394)
+.+|..|+ .-....|-|++|...+++++++.+.+.....- -.+.++..|+..+..+|+|++++....+++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 34444444 33456789999999999999998776332211 2455778899999999999999999999999887
Q ss_pred hcccCCCc-hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124 174 DSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222 (394)
Q Consensus 174 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 222 (394)
+......+ ...+..+.++.+..+...|+.++|+..|+.+-++..+..|.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 65444443 34455666889999999999999999999999887665543
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.21 E-value=1.5e-05 Score=50.03 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=52.2
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
..+|...+++++|+..+++++.+ +|.....+...|.++...|++++|...++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56788999999999999999987 5667788999999999999999999999999976
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.21 E-value=0.00066 Score=59.51 Aligned_cols=176 Identities=19% Similarity=0.127 Sum_probs=115.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhCCchHH---HHHHHHHHHHHHHH----hhchhHHHHHHHHHHHHHHHhcCCCCcchH
Q 016124 28 TLENYEKSMLVYQRVINVLESRYGKTSIL---LVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLV 100 (394)
Q Consensus 28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 100 (394)
-.||-+.++..+.++.+. . +-..|. ..-.|+.....+.. ....+.|.+.+...... .|...
T Consensus 200 F~gdR~~GL~~L~~~~~~-~---~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-E---NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-C---CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcH
Confidence 357888888888877541 1 111221 11112222221211 23445565555555543 46667
Q ss_pred hhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124 101 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180 (394)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 180 (394)
..+...|.++...|+.++|+..+++++...... ..-...++..++.++..+++|++|..++.+..+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------- 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------- 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------
Confidence 778889999999999999999999988543221 11234567899999999999999999999987731
Q ss_pred chHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124 181 DDSIMENMRIDLAELLHIVGRG-------QEGRELLEECLLITEKYKGKEHPSFV 228 (394)
Q Consensus 181 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~ 228 (394)
....+...+..|.++...|+. ++|.+++.++-....+..|...|...
T Consensus 336 -~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~ 389 (468)
T PF10300_consen 336 -KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEK 389 (468)
T ss_pred -ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHH
Confidence 122233446788999999999 88888888888777766655555433
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=98.19 E-value=7.5e-05 Score=62.79 Aligned_cols=133 Identities=15% Similarity=0.156 Sum_probs=100.2
Q ss_pred CCchHHHHHHHHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHH
Q 016124 10 DDEPLLDAILLHMGSMYSTL---------ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 80 (394)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 80 (394)
+.+|..+.++..++.+++.. .+..+|....++++++ ++..+.++..+|.+....|+++.|...
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da~a~~~~g~~~~~~~~~~~a~~~ 360 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDGKILAIMGLITGLSGQAKVSHIL 360 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhhcchhhHHHH
Confidence 56788888888888888754 2334566666666665 234466788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHH-HHHHCCCH
Q 016124 81 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAH-AKCANGNA 158 (394)
Q Consensus 81 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~-~~~~~g~~ 158 (394)
|++|+.+ +|..+.+++..|.+....|+.++|...+++++++ +|. .......+-. .|+ ....
T Consensus 361 f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~ 423 (458)
T PRK11906 361 FEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--------EPRRRKAVVIKECVDMYV-PNPL 423 (458)
T ss_pred HHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CchhhHHHHHHHHHHHHc-CCch
Confidence 9999987 7888999999999999999999999999999987 332 2222223332 443 4557
Q ss_pred HHHHHHHHH
Q 016124 159 EEAVELYKK 167 (394)
Q Consensus 159 ~~A~~~~~~ 167 (394)
++|+.+|-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 788877755
No 223
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=9.6e-06 Score=50.10 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=45.7
Q ss_pred HHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 111 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 111 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
...|++++|+..|++++.. +|....+...+|.+|...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999987 4555667889999999999999999999998874
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.19 E-value=1.6e-05 Score=49.96 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=52.5
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 234 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 234 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
|..+|...+++++|+.++++++.+ +|.....+...|.++...|++.+|...++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356789999999999999999984 56677888999999999999999999999999754
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.001 Score=53.23 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=114.4
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124 64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 143 (394)
Q Consensus 64 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 143 (394)
-+.+....|++.+|-..+++.++- .|....+...--.+++..|+...-...+++.+... .++-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345566778888888888887764 44444555555677888888888888777766432 334555566
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 223 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 223 (394)
.....+..+...|-|++|++..++++++.+. + ..+...++.++...|++.++.++..+.-...+. .
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~-------D---~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s 242 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRF-------D---CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----S 242 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCc-------c---hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----h
Confidence 6667788888999999999999999886321 1 334466888888999999999888775544321 1
Q ss_pred CccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124 224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICL 255 (394)
Q Consensus 224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 255 (394)
......-+...+.++...+.++.|++.|..-+
T Consensus 243 ~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 243 WMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 11222334456777888889999998887643
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.11 E-value=0.0029 Score=50.55 Aligned_cols=228 Identities=27% Similarity=0.344 Sum_probs=160.8
Q ss_pred hchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHH
Q 016124 30 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL 109 (394)
Q Consensus 30 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 109 (394)
+.+..+...+...+..... ..........+..+...+.+..+...+...... ...+.....+...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 104 (291)
T COG0457 37 GELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLL 104 (291)
T ss_pred hhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHH
Confidence 4455555555554443210 012455667788888999999999998888764 1245566778888999
Q ss_pred HHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124 110 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 188 (394)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (394)
+...+++..+...+..++..... + .......+. ++...|++++|...+.+++... +........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~ 169 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-------PELNELAEA 169 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCccchHHH
Confidence 99999999999999888765211 1 112223333 8999999999999999996521 100122333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC
Q 016124 189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 267 (394)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 267 (394)
....+..+...++++.++..+.+++... +. ....+..++..+...++++.|...+..++... +
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 233 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLN--------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------P 233 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhC--------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------c
Confidence 4556666888999999999999988763 22 45677889999999999999999999998842 2
Q ss_pred cchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 268 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
.....+..++..+...+.++++...+.+++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 244556677777777777999999998887754
No 227
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.09 E-value=4e-05 Score=61.11 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 140 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 140 (394)
+-..|+-|+.+|.|++|+.+|.+++.. .|..+..+.+.+..|++..+|..|+.-+..|+.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 345689999999999999999999886 4666678889999999999999999999999987 345
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
...+|...+..-..+|...+|.+-++.++++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 66788999999999999999999999999863
No 228
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.07 E-value=0.0053 Score=52.35 Aligned_cols=285 Identities=15% Similarity=0.071 Sum_probs=153.3
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH-HHH
Q 016124 65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGM 143 (394)
Q Consensus 65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~ 143 (394)
+.+....|+++.-..+.. .. ..........-+......++++++..+.+++.............. ...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~----~~-------~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLS----QS-------NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred HHHHHhcCChhhHHHHHh----hc-------cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 456667788887322222 11 111113334445555588999999999999887765433221111 111
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC--
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG-- 221 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 221 (394)
.+..+.. +....+.+++..+...... .......+... --.+...........+..+......+.
T Consensus 74 ~y~~l~~-lq~L~Elee~~~~~~~~~~----------~~~~~~~l~~~---W~~Rl~~~~~~~~~~~~il~~R~~~l~~~ 139 (352)
T PF02259_consen 74 AYPSLVK-LQQLVELEEIIELKSNLSQ----------NPQDLKSLLKR---WRSRLPNMQDDFSVWEPILSLRRLVLSLI 139 (352)
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhhcc----------cHHHHHHHHHH---HHHHHHHhccchHHHHHHHHHHHHHHhcc
Confidence 2222211 1222233333333211100 01111111000 001111112223334444444443332
Q ss_pred CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH-HH
Q 016124 222 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY-IR 300 (394)
Q Consensus 222 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~ 300 (394)
.........+..++.+..+.|+++.|...+.++..... ........+....+.++...|+..+|+..++..+. ..
T Consensus 140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 11445677889999999999999999999988766321 11122445566778999999999999999998887 22
Q ss_pred HHHc-------------------------CCCChhHHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHHHhhcCC
Q 016124 301 EIAF-------------------------GKDSLPVGEALDCLVSIQTRL------GEDDTKLLELLKRVLRIQEREFGS 349 (394)
Q Consensus 301 ~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~------g~~~~~A~~~~~~al~~~~~~~~~ 349 (394)
.... .......+.++..+|...... +..+ ++...|+++.++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~-~~~~~~~~a~~~------- 287 (352)
T PF02259_consen 216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD-EILKYYKEATKL------- 287 (352)
T ss_pred hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHHHh-------
Confidence 2210 011123355666677776666 5566 788888888765
Q ss_pred CCHHHHHHHHHHHHHHHHhcCc-----------------hhhhhhHHHHHHHHHH
Q 016124 350 ESEEVMLTLKKVVSYLDKLGRK-----------------EEKFPLKKRLSNLRMK 387 (394)
Q Consensus 350 ~~~~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~~~~~ 387 (394)
.|....++..+|..+...-+. ..|+..|-+++..+++
T Consensus 288 -~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 288 -DPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred -ChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 344555677777766543221 2366667777666555
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.0059 Score=54.08 Aligned_cols=179 Identities=13% Similarity=-0.004 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHH-----HHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINV-----LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
..|..++......-.++-|...|-++-.. .+++ + ....--...+.+-..-|+|++|++.|-.+-..
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-~----~i~s~~~q~aei~~~~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-R----TIHSKEQQRAEISAFYGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-h----hhhhHHHHhHhHhhhhcchhHhhhhhhccchh----
Confidence 44566777666666677776666554221 1111 0 00000112344445557888888777544211
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
+.+ ..++...|++-...++++..- .+.++...-.++.++|..+..+..+++|.++|...-..
T Consensus 764 ------DLA------ielr~klgDwfrV~qL~r~g~------~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 764 ------DLA------IELRKKLGDWFRVYQLIRNGG------SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred ------hhh------HHHHHhhhhHHHHHHHHHccC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 111 233455566555444443211 12234445667888888888888888888888775332
Q ss_pred HHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHH
Q 016124 172 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 251 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 251 (394)
.+...+++....+++-..+.. .. |+....+-.+|..+...|--++|.+.|
T Consensus 826 ------------------e~~~ecly~le~f~~LE~la~--------~L----pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 ------------------ENQIECLYRLELFGELEVLAR--------TL----PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ------------------HhHHHHHHHHHhhhhHHHHHH--------hc----CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 234455555555544322211 11 222233445667777777777776655
Q ss_pred H
Q 016124 252 R 252 (394)
Q Consensus 252 ~ 252 (394)
-
T Consensus 876 L 876 (1189)
T KOG2041|consen 876 L 876 (1189)
T ss_pred H
Confidence 4
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0045 Score=49.74 Aligned_cols=160 Identities=12% Similarity=-0.022 Sum_probs=112.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHH
Q 016124 28 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 107 (394)
Q Consensus 28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 107 (394)
..|++.+|-..+++.++- .|....+...--..++..|+...-...+++.+... .++.|-...+...++
T Consensus 115 ~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYA 182 (491)
T ss_pred ccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHH
Confidence 344455544444444442 34334444445567788888888888887776542 235566677777888
Q ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHH
Q 016124 108 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 187 (394)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 187 (394)
..+...|-|++|++..++++++ ++....+....+.++...|++.++.++..+.-...+. ..-....
T Consensus 183 FgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~------s~mlasH 248 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ------SWMLASH 248 (491)
T ss_pred hhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh------hhHHHhh
Confidence 9999999999999999999987 4445566778899999999999999998876554432 1222233
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 016124 188 MRIDLAELLHIVGRGQEGRELLEECL 213 (394)
Q Consensus 188 ~~~~la~~~~~~g~~~~A~~~~~~a~ 213 (394)
-|...|.++...+.|+.|++.|..-+
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHH
Confidence 34556888888999999999998654
No 231
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0048 Score=49.58 Aligned_cols=314 Identities=14% Similarity=0.128 Sum_probs=190.1
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
..+.......++++++..+.+.+...+.. ..++ ..-.....+|..+...|+..+-..........+.... .
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---K 83 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---K 83 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---h
Confidence 34445556667788888888877642211 1111 2334567899999999999888777777666554432 2
Q ss_pred cchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 97 ADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
+..+.....+-..+.. .+..+.-+..+..++++..+. .... .-..-..+...|...++|.+|+......+.-.++
T Consensus 84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444333 345567778888888876552 1111 1223356888999999999999999998888776
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH-HHHHHHHHHcccHHHHHHHHHH
Q 016124 175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRI 253 (394)
Q Consensus 175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~ 253 (394)
. +|...+..++..-..+|....+..+|...+..|.......+- +|...... ..-|.++....+|..|..+|-+
T Consensus 161 l----DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyE 234 (411)
T KOG1463|consen 161 L----DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYE 234 (411)
T ss_pred c----ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHHHHhccceeecccccchHHHHHHH
Confidence 4 455666667777788999999999999988887766655542 33332222 2336667777899999999999
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHH
Q 016124 254 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 333 (394)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~ 333 (394)
+.+-+... .++.....++..+-.+-...+..++--..+.-=..+. . ..+ ...++..++..+.. ..+
T Consensus 235 AfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g~-~i~AmkavAeA~~n------RSL 300 (411)
T KOG1463|consen 235 AFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AGR-DIDAMKAVAEAFGN------RSL 300 (411)
T ss_pred HHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cCc-chHHHHHHHHHhcC------CcH
Confidence 98865443 2233444455555555556667666544443221111 1 111 23455566665533 334
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 016124 334 ELLKRVLRIQEREFGSESEEVMLTLKKVVS 363 (394)
Q Consensus 334 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 363 (394)
..|++|+.-++.-+. .+|-+..-+..|-.
T Consensus 301 kdF~~AL~~yk~eL~-~D~ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 301 KDFEKALADYKKELA-EDPIVRSHLQSLYD 329 (411)
T ss_pred HHHHHHHHHhHHHHh-cChHHHHHHHHHHH
Confidence 456666655544332 23444333333333
No 232
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.00 E-value=3.8e-05 Score=61.20 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=81.6
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
-..|+.|+.+|.|++|+.+|.+++... |.....+.+.+..|+....|..|+.-+..|+.+ +...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence 457899999999999999999998863 333445778899999999999999999999987 3456
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
..+|...|..-..+|...+|.+-++.++++
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 788999999999999999999999999987
No 233
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=0.0025 Score=47.02 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124 143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222 (394)
Q Consensus 143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 222 (394)
.+...++..+...|++++|+..++.++.. ..|......+-..+|++...+|++++|+..+....
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~-------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--------- 153 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQ-------TKDENLKALAALRLARVQLQQKKADAALKTLDTIK--------- 153 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------
Confidence 34567788999999999999999999863 23445555566889999999999999998876432
Q ss_pred CCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 223 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 223 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
++..........|.++...|+-++|...|++++..
T Consensus 154 ~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 154 EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 22234445566799999999999999999999984
No 234
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.98 E-value=0.0017 Score=43.30 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=85.0
Q ss_pred HHHHHHHHHH--HHHHhhchhHHHHHHHHHHHHHHHhcCCCCc----chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124 57 LVTSLLGMAK--VLGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130 (394)
Q Consensus 57 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 130 (394)
++.+|..|+. -...-|.|++|...++++.++.+.++..... -.+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3444555543 3456688999999999999998776543222 234577889999999999999999999999988
Q ss_pred HHhhCCC---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 131 TKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 131 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.+...-. ....+.+.++.+..+...|+.++|+..|+.+-++..+.
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 7652211 12345566788999999999999999999999987654
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.94 E-value=0.0013 Score=47.89 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch--------------HHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 84 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 84 (394)
+...|......|+...++..+++++.++...+-++. .....+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344566667778999999999999988764332221 124556667788889999999999999999
Q ss_pred HHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC
Q 016124 85 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 137 (394)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 137 (394)
+.. +|..-.++..+..++...|+..+|+..|++......+-+|..
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 987 566778889999999999999999999999998887665543
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.92 E-value=0.0016 Score=47.34 Aligned_cols=113 Identities=25% Similarity=0.269 Sum_probs=80.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------------SIMENMRIDLAELLHIVGRGQEGRELLEEC 212 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 212 (394)
+...|......|+.+.++..+++++.+++.....+... .....+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 33445556677889999999999998876431111111 123445567788889999999999999999
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124 213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 265 (394)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 265 (394)
+.. +|..-..+..+..++...|+..+|+..|++......+-+|..
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 986 566777888999999999999999999999998887766644
No 237
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00012 Score=55.31 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
+.-+..-|..++....|+.|+..|.+++.+ .|..+..+.+-+.++.+..+++.+..-..+++++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-------- 73 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-------- 73 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------
Confidence 344566788889999999999999999986 3566677889999999999999999999999997
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 133 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 133 (394)
.|..+..++.+|........|++|+..++++..+.+..
T Consensus 74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 57788999999999999999999999999999887764
No 238
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.91 E-value=0.0012 Score=50.90 Aligned_cols=102 Identities=24% Similarity=0.202 Sum_probs=82.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-----Ccc
Q 016124 152 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPS 226 (394)
Q Consensus 152 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~ 226 (394)
+.....+++|+..|.-|+-...- .+.++...+.++..+|.+|...|+.+....++++|+..+.+..... ..+
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~---~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQI---KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 34456788999999988877654 2456667888899999999999999888888899888887765332 224
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 227 FVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 227 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
....++.+|.+..+.|++++|..+|.+++.
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 466788899999999999999999999887
No 239
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.90 E-value=0.0002 Score=55.12 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=79.9
Q ss_pred hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC-----CHHHHHH
Q 016124 283 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE-----SEEVMLT 357 (394)
Q Consensus 283 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~ 357 (394)
...+++|++.|.-|+-...- .+.++...+..+..+|++|...|+.+ ....++++|++.+.+.+... ..+...+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~-~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEE-NEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 45678899999888876543 34455577888999999999999977 78888888888877665433 2355678
Q ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHH
Q 016124 358 LKKVVSYLDKLGRKEEKFPLKKRLSNLR 385 (394)
Q Consensus 358 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 385 (394)
++.+|.+..+.|++++|..+|.+++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 8899999999999999999999987643
No 240
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0007 Score=51.59 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCc---hH-------HHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---SI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 85 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 85 (394)
..++..-|+-++..|+|.+|...|+.|+...+.+.-.. .| .....+.+.+.|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999998776653222 22 234467788999999999999999999888
Q ss_pred HHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 86 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
.. +|....+++..|.+....=+.++|..-|.+++++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 75 6788899999999999999999999999999986
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.88 E-value=0.0098 Score=48.96 Aligned_cols=267 Identities=14% Similarity=0.074 Sum_probs=169.8
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH-H
Q 016124 65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-M 143 (394)
Q Consensus 65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~ 143 (394)
|.+-.-.|+-..|.++-.++-.+.. .+.+..+ +..-+..-.-.|+++.|.+-|+-.+. +|++. .
T Consensus 91 GliAagAGda~lARkmt~~~~~lls----sDqepLI--hlLeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRll 155 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLS----SDQEPLI--HLLEAQAALLEGDYEDARKKFEAMLD---------DPETRLL 155 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhh----ccchHHH--HHHHHHHHHhcCchHHHHHHHHHHhc---------ChHHHHH
Confidence 4444556788888888777765542 2333333 33346667788999999999988764 34432 1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 223 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 223 (394)
-+..|-.--...|..+.|..+-+.+...... -+. +....-...+..|+++.|+.+.+...... ..+++
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-------l~W---A~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~ 223 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKAPQ-------LPW---AARATLEARCAAGDWDGALKLVDAQRAAK--VIEKD 223 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhccC-------Cch---HHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchh
Confidence 2333333345789999999999999876432 222 22334445678999999999998766542 12111
Q ss_pred Ccc--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124 224 HPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301 (394)
Q Consensus 224 ~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 301 (394)
..+ .+..+...+.... ..+...|...-.++.++ .|+..-.-..-+..++..|+..++-.+++.+-+.
T Consensus 224 ~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-- 292 (531)
T COG3898 224 VAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA-- 292 (531)
T ss_pred hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--
Confidence 111 1112222222222 23567777777777663 3555556667789999999999999999988764
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124 302 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 381 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 381 (394)
..||+....| ++.+.|+ .++.-++++-.+.. -.|+..++...++..-...|++..|..--+.+
T Consensus 293 ----ePHP~ia~lY-----~~ar~gd---ta~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 293 ----EPHPDIALLY-----VRARSGD---TALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred ----CCChHHHHHH-----HHhcCCC---cHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4677654433 3445554 67777777765432 24566777888888889999998888777666
Q ss_pred HHHHH
Q 016124 382 SNLRM 386 (394)
Q Consensus 382 ~~~~~ 386 (394)
..+.+
T Consensus 356 ~r~~p 360 (531)
T COG3898 356 AREAP 360 (531)
T ss_pred hhhCc
Confidence 65543
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.87 E-value=0.013 Score=49.98 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=94.7
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch------
Q 016124 66 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------ 139 (394)
Q Consensus 66 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------ 139 (394)
.-..+..+...-++..++|+++ +|+.+.+|..|+.- ......+|+.+++++++..+..++.+..
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3344556777888888888887 46667777766642 2344788999999999888776543211
Q ss_pred -----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHH
Q 016124 140 -----------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 208 (394)
Q Consensus 140 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 208 (394)
....+...+|.+..+.|+.++|++.++..++... ......++.++..++...+.|.++..+
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p--------~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP--------NLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC--------ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 1234567899999999999999999999887431 122355779999999999999999888
Q ss_pred HHH
Q 016124 209 LEE 211 (394)
Q Consensus 209 ~~~ 211 (394)
+.+
T Consensus 318 L~k 320 (539)
T PF04184_consen 318 LAK 320 (539)
T ss_pred HHH
Confidence 776
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00013 Score=55.19 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 140 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 140 (394)
+..-|..++...+|..|+..|.+++.+ +|..+..+.+-+.++++..+++.+..-..+++++ .|.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 445577788888999999999999886 6777888999999999999999999999999987 677
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.+...+.+|........|++|+..+.++..+.+..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999988775
No 244
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.86 E-value=0.0042 Score=46.50 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124 54 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 133 (394)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 133 (394)
......++..+|..|...|+.++|++.|.++.+.. .........+..+..+....+++.....+..++-......
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 34677889999999999999999999999987753 2334567788888999999999999999999998887652
Q ss_pred hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 134 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 134 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
.+..........-|..+...++|.+|...|-.+...+
T Consensus 107 --~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 107 --GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred --chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2222222333445666777899999999998876543
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.83 E-value=0.0054 Score=45.91 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=88.0
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
......++..+|..|...|++++|.+.|.++.+.+ .........+.++..+....+++.....+..++-.+...
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~- 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK- 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence 44567789999999999999999999999987753 234456777888999999999999999999999988765
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
+.+..........-|..+...++|.+|...|-.+..
T Consensus 106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 334444445555667778889999999998877654
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.82 E-value=0.0043 Score=45.82 Aligned_cols=139 Identities=20% Similarity=0.194 Sum_probs=97.3
Q ss_pred HHHHHHHHhhhchH---HHHHHHHHHHHHHHHHhCC-------------chHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 016124 20 LHMGSMYSTLENYE---KSMLVYQRVINVLESRYGK-------------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 83 (394)
Q Consensus 20 ~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 83 (394)
...|+-|+...+.+ +|-..|++++......... ....-.-+...++..+...|++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34566676665554 6777788877655321110 0111223345677888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHH
Q 016124 84 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 163 (394)
Q Consensus 84 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 163 (394)
++... .|......+-.+|+.+...+|.+++|+..+.... ++..........|.++...|+-++|..
T Consensus 115 ~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 115 ALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EESWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred HHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cccHHHHHHHHhhhHHHHcCchHHHHH
Confidence 88652 2333445566789999999999999998876532 233444556678999999999999999
Q ss_pred HHHHHHHHH
Q 016124 164 LYKKALRVI 172 (394)
Q Consensus 164 ~~~~a~~~~ 172 (394)
.|++++...
T Consensus 181 ay~kAl~~~ 189 (207)
T COG2976 181 AYEKALESD 189 (207)
T ss_pred HHHHHHHcc
Confidence 999999863
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.82 E-value=0.0073 Score=51.46 Aligned_cols=147 Identities=18% Similarity=0.102 Sum_probs=79.4
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124 107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 186 (394)
Q Consensus 107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (394)
..-..+..+.+.-++..++|+++ +|+.+.++..|+.- ...-..+|+.+++++++..+.. .+.+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~--lg~s----- 237 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS--LGKS----- 237 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh--hchh-----
Confidence 33344556677777777777776 34445555555431 2334677778888877765432 0000
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124 187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 266 (394)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 266 (394)
......|..-+.. .. .+......+...+|.+..+.|+.++|++.++..++.. ..
T Consensus 238 -------~~~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~ 291 (539)
T PF04184_consen 238 -------QFLQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PN 291 (539)
T ss_pred -------hhhhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------Cc
Confidence 0000111110000 00 0111123445567777778888888887777776521 11
Q ss_pred CcchHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016124 267 QSISFPMLHLGITLYHLNRDKEAEKLVLEA 296 (394)
Q Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (394)
.+...+..+|..++...+.+.++...+.+-
T Consensus 292 ~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 292 LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 134456677777777888777777766653
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.75 E-value=0.019 Score=48.08 Aligned_cols=205 Identities=12% Similarity=0.093 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 016124 115 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 194 (394)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~ 194 (394)
.+..+.....+.+...+..++........+..++-..|....+|+.-+.+.+..-.+- ..+......+....|.
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p------~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP------TCDVANQHNIKFQYAF 187 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC------ccchhcchHHHHHHHH
Confidence 3444444555555555544432222233455666677889999998888877655431 1112222334466778
Q ss_pred HHHH---cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHHhhc
Q 016124 195 LLHI---VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------KNFVEAERLLRICLDIMTKTV 262 (394)
Q Consensus 195 ~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~ 262 (394)
++.+ .|+.++|+..+..++.. ..+....++..+|.+|... ...++|+..|.++.++
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~----- 255 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI----- 255 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-----
Confidence 8888 89999999998886543 2334455677788877543 2355666666666553
Q ss_pred CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC----CChhHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124 263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK----DSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 338 (394)
Q Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 338 (394)
+ + ....-.|++.++...|...+...-+++.........|. +..........++.+..-.|+++ +|...+++
T Consensus 256 --~-~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~-ka~~a~e~ 330 (374)
T PF13281_consen 256 --E-P-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYE-KAIQAAEK 330 (374)
T ss_pred --C-c-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHH-HHHHHHHH
Confidence 2 2 12233577878888887655554444443222222211 11222233455777778889999 99999999
Q ss_pred HHHH
Q 016124 339 VLRI 342 (394)
Q Consensus 339 al~~ 342 (394)
++..
T Consensus 331 ~~~l 334 (374)
T PF13281_consen 331 AFKL 334 (374)
T ss_pred Hhhc
Confidence 8865
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.74 E-value=0.019 Score=48.02 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=120.5
Q ss_pred chHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHH
Q 016124 31 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 110 (394)
Q Consensus 31 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (394)
.+..+.....+.+...+..++...........++-.+|....+|+.-+++.+..-.+ ...+.+....+....|.++
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHH
Confidence 333333444445544444333322233445556667788888888888777664433 1112233445566778888
Q ss_pred HH---hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhcccC
Q 016124 111 IK---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 111 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
.+ .|+.++|+..+..++.- .......++..+|.+|-. ....++|+..|.++.++..
T Consensus 190 nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~----- 257 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP----- 257 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-----
Confidence 88 89999999999887543 223333456666776643 2246778888888777531
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 254 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 254 (394)
+ .. .-.|++.++...|...+...-+++.........+ .+..........++.+..-.|++++|.+.++++
T Consensus 258 --~--~Y--~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 258 --D--YY--SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred --c--cc--chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 11 1156777777777654444333333311111111 122233445567788888899999999999998
Q ss_pred HHH
Q 016124 255 LDI 257 (394)
Q Consensus 255 ~~~ 257 (394)
...
T Consensus 332 ~~l 334 (374)
T PF13281_consen 332 FKL 334 (374)
T ss_pred hhc
Confidence 873
No 250
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.014 Score=45.90 Aligned_cols=228 Identities=14% Similarity=0.080 Sum_probs=150.4
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
..+++-....+++++|+..|.+.+.-.-..........-.+...++.+|...|++..--+......+...... .|..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhH
Confidence 3466777788999999999988876411100001113344577899999999998877766666655554432 3444
Q ss_pred HhhhHhHHHHH-HHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 100 VLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 100 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
..+...|-.-+ .....++.-+..+...++...+-. ..-.....-..+...++..|+|.+|+....-.+.-.++.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--- 158 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--- 158 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---
Confidence 44444443332 234567777888888887765421 011112233567888999999999999999988877764
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT-HLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
++.+.+..++..-..+|....+..++..-+..|.......+. +|.... .-..-|..++...+|..|..+|-++++-
T Consensus 159 -DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 159 -DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred -cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 455566667777788999999999988888877766655542 232221 1122356677788999999999999885
Q ss_pred H
Q 016124 258 M 258 (394)
Q Consensus 258 ~ 258 (394)
+
T Consensus 236 f 236 (421)
T COG5159 236 F 236 (421)
T ss_pred c
Confidence 4
No 251
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.71 E-value=0.0017 Score=42.88 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=62.6
Q ss_pred HHHhCcHHHHHHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124 110 FIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 188 (394)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (394)
....|+|.+|.+.+.+..+......... ......++.++|.++...|++++|+..+++++++.++. .|...+..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~----~D~~~l~~a 83 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN----GDRRCLAYA 83 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----CCHHHHHHH
Confidence 4578999999999999999876643222 12455678889999999999999999999999999874 455555555
Q ss_pred HHHHHHH
Q 016124 189 RIDLAEL 195 (394)
Q Consensus 189 ~~~la~~ 195 (394)
+..+..+
T Consensus 84 l~~~~~l 90 (94)
T PF12862_consen 84 LSWLANL 90 (94)
T ss_pred HHHHHHH
Confidence 5555443
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.71 E-value=8.3e-05 Score=38.79 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124 357 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 357 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
++.+||.+|...|++++|+++|++++.+.++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999887654
No 253
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0011 Score=52.95 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 91 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 91 (394)
+...+.-+-.-|+-|+...+|..|+..|.+.+..- .++....+..|.+.+.+....|+|..|+.-..+++.+
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 44567778888999999999999999999998752 2334456778899999999999999999999999886
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 130 (394)
.|....+++.-+.|+..+.++.+|..+++..+.+.
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 67788899999999999999999999999887663
No 254
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0016 Score=49.67 Aligned_cols=107 Identities=23% Similarity=0.165 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC---cc-------hHhhhHhHHHHHHHhCcHHHHHHHHHHH
Q 016124 57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES---AD-------LVLPLFSLGSLFIKEGKAVDAESVFSRI 126 (394)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 126 (394)
...++..-|+-++..|+|.+|...|+.|+...+...-... |. ....+.+.+.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999988776543222 22 2346778899999999999999999888
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 127 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
+.. +|....+++..|......-+..+|..-+.+++++
T Consensus 257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 865 6777889999999999999999999999999985
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.58 E-value=0.00029 Score=36.75 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
++.+||.+|...|++++|+.+|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4688999999999999999999999877654
No 256
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.57 E-value=0.0016 Score=42.99 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=60.9
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 016124 238 YSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD 316 (394)
Q Consensus 238 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (394)
....|++.+|.+.+.+..+......... ......++.++|.++...|++++|+..+++++++.++. .+......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3567999999999999998766553222 11345667889999999999999999999999999886 44444445555
Q ss_pred HHHHH
Q 016124 317 CLVSI 321 (394)
Q Consensus 317 ~l~~~ 321 (394)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55443
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.56 E-value=9.2e-05 Score=38.14 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124 356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
.++..+|.++..+|++++|+..|++++++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999998765
No 258
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.08 Score=49.57 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=83.8
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 179 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 179 (394)
..+|..+|......|...+|++.|-++ ++|. .+.....+....|.|++-++++..+.+..++.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----------dDps---~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---- 1166 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DDPS---NYLEVIDVASRTGKYEDLVKYLLMARKKVREP---- 1166 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----------CCcH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc----
Confidence 356677777777777777777777654 2332 34555666677788888777777766654331
Q ss_pred CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 016124 180 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 259 (394)
Q Consensus 180 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 259 (394)
. +-..+...|.+.++..+-.++. .|+++.. ....|.-....|.|+.|.-+|...
T Consensus 1167 -~------id~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1167 -Y------IDSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred -c------chHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 1 0022334555556555433332 1232222 234566666667777666555432
Q ss_pred hhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124 260 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 297 (394)
Q Consensus 260 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 297 (394)
.-+..|+..+...|+|..|....++|-
T Consensus 1221 -----------SN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1221 -----------SNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 224567777777788877777766653
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.52 E-value=0.046 Score=46.63 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HH
Q 016124 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-IT 216 (394)
Q Consensus 138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~ 216 (394)
.......+...+.+....|+++.|...+.++....... ... ...+....+.+....|+..+|+..++..+. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~---~~~---~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS---ESL---LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc---cCC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34566788999999999999999999999987643211 111 223346678999999999999999988887 22
Q ss_pred HHhhC-------------------------CCCccHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHhhcCCC
Q 016124 217 EKYKG-------------------------KEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPD 265 (394)
Q Consensus 217 ~~~~~-------------------------~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~ 265 (394)
....+ ......+.++..+|...... +..+++...|..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 287 (352)
T PF02259_consen 216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-------- 287 (352)
T ss_pred hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------
Confidence 22100 01122345566666666666 7777788888887774
Q ss_pred CCcchHHHHHHHHHHHhh
Q 016124 266 DQSISFPMLHLGITLYHL 283 (394)
Q Consensus 266 ~~~~~~~~~~la~~~~~~ 283 (394)
.|....++..+|..+...
T Consensus 288 ~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 288 DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 344455667777665543
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.03 Score=49.94 Aligned_cols=64 Identities=20% Similarity=0.076 Sum_probs=34.3
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHH-----HHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKI-----YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 168 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 168 (394)
+..+..++..-...-.++-|+..|-+.-+. .++. .....--...+.+-.--|+|++|.+.|..+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 355666777766666777777776654321 1111 000001123344555568888888877553
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.45 E-value=0.00042 Score=35.61 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINV 45 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 45 (394)
+.+++.+|.+|..+|++++|+..|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 467899999999999999999999999987
No 262
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0033 Score=50.36 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
..+..+..-|.-|+...+|..|...|.+.+.. ..+++...+..|.|.|.+....|+|..|+.-..+++.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 46667778899999999999999999999885 34677777889999999999999999999999998874
Q ss_pred hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124 220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258 (394)
Q Consensus 220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 258 (394)
.|....++..-+.++....++.+|..+++..+.+.
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57778889999999999999999999998887654
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.41 E-value=0.00058 Score=37.56 Aligned_cols=42 Identities=36% Similarity=0.327 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 278 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 278 (394)
.++..+|..|...|++++|++.|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35778999999999999999999999983 5667777777764
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.40 E-value=0.00052 Score=37.76 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124 59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 108 (394)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 108 (394)
.++..+|..|...|++++|+..|+++++. .|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35778999999999999999999999987 4556666666654
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.36 E-value=0.0006 Score=34.97 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVL 46 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 46 (394)
+.+++.+|.+++..|++++|+.+|++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999873
No 266
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.34 E-value=0.0082 Score=48.99 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh-hcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124 230 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFGKDS 308 (394)
Q Consensus 230 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 308 (394)
+|..+.....+.+..+.|..+|.++.. ........|...|.+-.. .++.+.|...|+.+++.+ +..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence 455666777777889999999999864 233455677788888666 566666999999999876 333
Q ss_pred hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124 309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
+ ..+......+...|+.+ .|..+|++++... +.......+|......-...|+.+....+.+++.+..++
T Consensus 70 ~---~~~~~Y~~~l~~~~d~~-~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 70 P---DFWLEYLDFLIKLNDIN-NARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp H---HHHHHHHHHHHHTT-HH-HHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred H---HHHHHHHHHHHHhCcHH-HHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 3 34555567778889888 9999999988531 111214567778888888999999999999888877644
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.33 E-value=0.00024 Score=36.54 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Q 016124 356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 387 (394)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 387 (394)
.++..+|.++...|++++|+..|++++.+.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 56889999999999999999999999998764
No 268
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.30 E-value=0.14 Score=47.23 Aligned_cols=191 Identities=18% Similarity=0.162 Sum_probs=107.6
Q ss_pred HhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHH
Q 016124 112 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 191 (394)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 191 (394)
..+++.+|.....+.+.- +|....+...-|.++.++|+.++|..+++.. .. ..+++.. ++..
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~------~~~~D~~---tLq~ 82 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YG------LKGTDDL---TLQF 82 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-cc------CCCCchH---HHHH
Confidence 557788888887777654 5555556666788899999999999655543 32 2223222 3356
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 016124 192 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 271 (394)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 271 (394)
+-.+|..+|++++|..+|+++... .|. -..+..+=.+|.+.+.|.+-.+ .++++++.. +..+..
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK~~--pk~~yy-- 146 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK---AALQLYKNF--PKRAYY-- 146 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC--Ccccch--
Confidence 788999999999999999999874 344 3444555566666666654322 233333322 223332
Q ss_pred HHHHHHHHHHhhcChHHHHH-H-HHHHHHHHHHHcCCC-Chh-HHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 016124 272 PMLHLGITLYHLNRDKEAEK-L-VLEALYIREIAFGKD-SLP-VGEALDCLVSIQTRLGEDDTKLLELLKR 338 (394)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~-~-~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 338 (394)
.|..+..+.......++... . +--|-++....+... ... .++. ...-.+...+|.++ +|.+.+..
T Consensus 147 fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~-eal~~l~~ 215 (932)
T KOG2053|consen 147 FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI-ILYLLILELQGKYQ-EALEFLAI 215 (932)
T ss_pred HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH-HHHHHHHHhcccHH-HHHHHHHH
Confidence 23334444444545444443 1 111112222222222 111 1221 22234566778787 88887743
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.29 E-value=0.00029 Score=36.06 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHH
Q 016124 81 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 120 (394)
Q Consensus 81 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 120 (394)
|++++++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6777776 6888999999999999999999986
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.28 E-value=0.00025 Score=36.30 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHH
Q 016124 123 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 162 (394)
Q Consensus 123 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 162 (394)
|++++++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6777776 5777789999999999999999986
No 271
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.15 Score=46.22 Aligned_cols=283 Identities=12% Similarity=0.020 Sum_probs=165.1
Q ss_pred chHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh-----hchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHh
Q 016124 31 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESADLVLPLFS 105 (394)
Q Consensus 31 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 105 (394)
+...|..+++.+.+. ....+...+|.++..- .+.+.|+.+++.+...+.+.. ......+.+.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 346677777776553 2344566677776543 589999999999987322211 1113447788
Q ss_pred HHHHHHHhC-----cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhccc
Q 016124 106 LGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIKDSNY 177 (394)
Q Consensus 106 l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~ 177 (394)
+|.+|.... ++..|..++.++-+. ++| .+...+|.++.... ++..|.++|..|...
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 999998854 677899999888764 233 35677888877655 578999999998763
Q ss_pred CCCchHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc-ccHHHHHHHHH
Q 016124 178 MSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLR 252 (394)
Q Consensus 178 ~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 252 (394)
+ . ..+...++.+|..- -+...|..++.++.+. .++. +...++.++.-. ++++.+...+.
T Consensus 358 -G-~----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~~ 421 (552)
T KOG1550|consen 358 -G-H----ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALYL 421 (552)
T ss_pred -C-C----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHHH
Confidence 1 1 23346677776542 4678999999988764 2222 233333333222 66666666555
Q ss_pred HHHHHHHhhcCCCCCcchHHHH-HHHHHHHhh----cChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh--
Q 016124 253 ICLDIMTKTVGPDDQSISFPML-HLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL-- 325 (394)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 325 (394)
...+...+ .+.....+. ......... .+...+...+.++.. .. ...+...|+.+|..-
T Consensus 422 ~~a~~g~~-----~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-------~g---~~~a~~~lgd~y~~g~g 486 (552)
T KOG1550|consen 422 YLAELGYE-----VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA-------QG---NADAILKLGDYYYYGLG 486 (552)
T ss_pred HHHHhhhh-----HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh-------cc---CHHHHhhhcceeeecCC
Confidence 44432211 111111111 111011111 133344444444332 22 234567788877655
Q ss_pred -CC-CchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-c--CchhhhhhHHHHHHHH
Q 016124 326 -GE-DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL-G--RKEEKFPLKKRLSNLR 385 (394)
Q Consensus 326 -g~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~a~~~~ 385 (394)
+. ++ .|...|.++..- . .....++|.++..- | ....|.++|.++....
T Consensus 487 ~~~d~~-~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 487 TGRDPE-KAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred CCCChH-HHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 33 55 777777777642 1 66788888887752 1 1567888887776543
No 272
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.22 E-value=0.012 Score=43.12 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=51.4
Q ss_pred CccHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC----hHHHHHHHHHH
Q 016124 224 HPSFVTHLLNLAASYSRSKNF---VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR----DKEAEKLVLEA 296 (394)
Q Consensus 224 ~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~a 296 (394)
+|..+..+++.|.++..+.++ .++..+++.++.-+++.+. -+|....++.++|.+|...+. ..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 566678888888888777555 4466666666665554432 247778899999999987653 45666777777
Q ss_pred HHHHHHH
Q 016124 297 LYIREIA 303 (394)
Q Consensus 297 ~~~~~~~ 303 (394)
...+++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 273
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.2 Score=47.17 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 59 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
..|..+|......|...+|++.|-+| ++| ..+..........|.|++-..++..+.+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 35777888888888888888877654 222 34556666777788888888877766554
No 274
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.17 E-value=0.0075 Score=44.07 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcH---HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 016124 74 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 150 (394)
Q Consensus 74 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 150 (394)
|+.|.+.++..... +|..+..+++-|.++..+.++ .++..+++.++.-++..+. -+|....++.++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 34455555544433 566677788888888777555 3455566555555444321 15666778889999
Q ss_pred HHHHCC----CHHHHHHHHHHHHHHHHh
Q 016124 151 AKCANG----NAEEAVELYKKALRVIKD 174 (394)
Q Consensus 151 ~~~~~g----~~~~A~~~~~~a~~~~~~ 174 (394)
+|...+ +..+|..+|++|.+.+++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 887754 445666666666665543
No 275
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.11 E-value=0.05 Score=44.48 Aligned_cols=134 Identities=10% Similarity=0.094 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124 60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEND 138 (394)
Q Consensus 60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 138 (394)
+|..+.....+.+..+.|...|.+|+. .......+|...|.+-+. .++.+.|...|+.+++.+.. +
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----D 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----C
Confidence 355666777777889999999999863 233445677788888666 56666699999999987522 2
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 216 (394)
Q Consensus 139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 216 (394)
+ ..+......+...|+.+.|..+|++++... +.......++......-...|+.+....+.+++.+..
T Consensus 70 ~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 70 P---DFWLEYLDFLIKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3 334445567788999999999999998753 1222133455666777778899998888888777653
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.10 E-value=0.0011 Score=34.01 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124 356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 386 (394)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 386 (394)
.++..+|.+|...|++++|...|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4688999999999999999999999999876
No 277
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.18 Score=43.89 Aligned_cols=258 Identities=18% Similarity=0.121 Sum_probs=141.3
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
+..-..+...++++. ....+++........++ +.....-+..+...|+.+.|+.+++.+++..-+ .-.
T Consensus 235 ~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~g----a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~ 302 (546)
T KOG3783|consen 235 YQFISFVLGTPNPDG--EECEKALKKYRKRYPKG----ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVK 302 (546)
T ss_pred HHHHHHHcCCCCccH--HHHHHHhHHHHHhCCCC----ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHH
Confidence 344445555555555 44444444444433332 223344566666777778888888887762211 123
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHH-HHH--------HHCCCHHHHHHHHHHHHH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAK--------CANGNAEEAVELYKKALR 170 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~a~~ 170 (394)
...++.+|+++..+.+|.+|-..+....+.. +...+ .|..++ -++ ...|+-++|..+++....
T Consensus 303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~ 374 (546)
T KOG3783|consen 303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE 374 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence 4567788888888888888888887766542 11111 222222 222 224466666666655555
Q ss_pred HHHhcccCCCchHH-------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124 171 VIKDSNYMSLDDSI-------------------MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 231 (394)
Q Consensus 171 ~~~~~~~~~~~~~~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (394)
.........|-... .+..+..++.++....... ..-..+.........-.+..+..--+
T Consensus 375 l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s--~~~l~k~~~~~~~~~~~d~Dd~~lk~ 452 (546)
T KOG3783|consen 375 LLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMS--KNELEKMRAELENPKIDDSDDEGLKY 452 (546)
T ss_pred HHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCC--hhhHHHHHHHHhccCCCCchHHHHHH
Confidence 44431000000000 0001122222222211111 11111221111111111233344556
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHH
Q 016124 232 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR 300 (394)
Q Consensus 232 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 300 (394)
..+|.++...|+...|..+|...++- ......++...+.+++.+|..+...|. ..++..++.+|-+..
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 67899999999999999999988864 333334566778899999999999998 999999999987643
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.05 E-value=0.0025 Score=32.59 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124 143 MAMCSLAHAKCANGNAEEAVELYKKALRVIK 173 (394)
Q Consensus 143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 173 (394)
.++..+|.+|...|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4688999999999999999999999999753
No 279
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.15 Score=41.55 Aligned_cols=284 Identities=11% Similarity=-0.009 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-SIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
.....+|..+...|+..+-.......-..+... ..+..+.....+-..+. .-+....-+.++..+++...+.. .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence 456788999999999887776666655544332 12333333333333332 23445566667777776654421 1
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.......-..+..+|...++|.+|+......+.-.++. .+.+....+...-+..|....+..+|...+..|-......
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 11122334568899999999999999999988887775 2444555566666788889999999998888776554332
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124 176 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 255 (394)
Q Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 255 (394)
-.+|...+..=..-|..+....+|.-|..+|-+|.+-+.... +++....++-.+-.+-...+..++--.++..-.
T Consensus 202 ---YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~ 276 (411)
T KOG1463|consen 202 ---YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL 276 (411)
T ss_pred ---ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence 122222233323346666677899999999999988665432 333444444444444455566665544443222
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHh--hcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC
Q 016124 256 DIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG 326 (394)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 326 (394)
.+. . ......+...++..+.. ..+|+.|+.-|..-+. ++|-+..-+..|-......+
T Consensus 277 ~l~--y----~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~--------~D~ivr~Hl~~Lyd~lLEkn 335 (411)
T KOG1463|consen 277 ALK--Y----AGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA--------EDPIVRSHLQSLYDNLLEKN 335 (411)
T ss_pred HHh--c----cCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh--------cChHHHHHHHHHHHHHHHHh
Confidence 211 1 12234566677777654 3455555555544332 33444444555555544443
No 280
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.12 Score=41.32 Aligned_cols=152 Identities=20% Similarity=0.160 Sum_probs=91.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124 146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 225 (394)
Q Consensus 146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 225 (394)
..-+.-....|++.+|...+..++....+. ..+...++.+|...|+.+.|...+...-.-. ..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~ 200 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN----------SEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QD 200 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCccc----------chHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hh
Confidence 344556778999999999999999875432 3445779999999999999998876521110 00
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC
Q 016124 226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 305 (394)
Q Consensus 226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 305 (394)
.....+.....++.......+....-.++ . .+|+.......+|..+...|+.++|.+.+-..++.. .+
T Consensus 201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d---~~ 268 (304)
T COG3118 201 KAAHGLQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD---RG 268 (304)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---cc
Confidence 11111111112222222222222222221 1 357777888899999999999999998876655543 22
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCc
Q 016124 306 KDSLPVGEALDCLVSIQTRLGEDD 329 (394)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~g~~~ 329 (394)
-.+.. ....+-.++...|..+
T Consensus 269 ~~d~~---~Rk~lle~f~~~g~~D 289 (304)
T COG3118 269 FEDGE---ARKTLLELFEAFGPAD 289 (304)
T ss_pred ccCcH---HHHHHHHHHHhcCCCC
Confidence 22222 3445566666667655
No 281
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.87 E-value=0.38 Score=44.57 Aligned_cols=231 Identities=16% Similarity=0.080 Sum_probs=128.3
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhH
Q 016124 27 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL 106 (394)
Q Consensus 27 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 106 (394)
...+++.+|+.-..+.++. +|....+...-|.++.++|+.++|..+++.. .. ..+..-.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~-------~~~~D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YG-------LKGTDDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-cc-------CCCCchHHHHHH
Confidence 4567888888877777664 3444445556678889999999999665532 22 122234567778
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124 107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 186 (394)
Q Consensus 107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (394)
-.+|..+|++++|..+|++++..+ |. -..+..+=.+|.+.+.|.+-.+. ++++++. . |..+...
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~---~-pk~~yyf 147 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN---F-PKRAYYF 147 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---C-CcccchH
Confidence 899999999999999999998752 32 33445555666776666654433 3333332 1 2222222
Q ss_pred HHHHHHHHHHHHcCChHHHHH-HH-HHHHHHHHHhhCCC-C-ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Q 016124 187 NMRIDLAELLHIVGRGQEGRE-LL-EECLLITEKYKGKE-H-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 262 (394)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~-~~-~~a~~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 262 (394)
|..+..+.......++... .+ --|-...+...... . ...+... ..-.++..+|++++|.+.+..-+. ..
T Consensus 148 --WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~-- 220 (932)
T KOG2053|consen 148 --WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EK-- 220 (932)
T ss_pred --HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hh--
Confidence 2233444444444444433 10 01111112222111 1 1112221 123456678999999998854433 11
Q ss_pred CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
..+........-...+...++|.+-.+...+.+.
T Consensus 221 --l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 221 --LTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred --ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 1222222223445566777888777666666655
No 282
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.72 E-value=0.06 Score=33.28 Aligned_cols=69 Identities=7% Similarity=0.056 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhc
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 92 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 92 (394)
...-|.-++...+.++|+..++++++.. .+.+....++-.+..+|...|+|.+.+.+..+=+++.+...
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455666778999999999999999864 34567888899999999999999999999888787776643
No 283
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.69 E-value=0.43 Score=42.66 Aligned_cols=150 Identities=22% Similarity=0.203 Sum_probs=86.2
Q ss_pred hHHHHHHHhCcHHHHHHHHHHH------HHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016124 105 SLGSLFIKEGKAVDAESVFSRI------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 178 (394)
Q Consensus 105 ~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 178 (394)
.++..+...|+|.+|.+.|.+. ++++.. .-++..+.-+...|..++-..+.++-.+.....
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~--- 703 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI--- 703 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---
Confidence 4688888999999999988753 333211 124556777777787777777776665555442
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 252 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 252 (394)
..|. .-|..+...|+.++|+... +-++++..+.. ......+..++..+.....+.-|.+.|+
T Consensus 704 --kePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 704 --KEPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred --CCcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 1121 1355667788888887653 33444443321 1222334445555555555555655555
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124 253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 295 (394)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (394)
+.-+ ...+..++...++|.+|..+.++
T Consensus 772 k~gD----------------~ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 772 KMGD----------------LKSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred Hhcc----------------HHHHhhheeecccchHhHhhhhh
Confidence 4322 12344556667777777655543
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.67 E-value=0.48 Score=43.09 Aligned_cols=187 Identities=13% Similarity=0.054 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 016124 157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGKEHPSFVTHL 231 (394)
Q Consensus 157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (394)
+...|..+++.+.+.-. ......+|.+|..- .+.+.|+.+++.+.....+.. +.....+.
T Consensus 227 ~~~~a~~~~~~~a~~g~------------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~ 291 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH------------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQ 291 (552)
T ss_pred hhhHHHHHHHHHHhhcc------------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccc
Confidence 35677777777665321 22335566666543 588999999999987322111 01122356
Q ss_pred HHHHHHHHHcc-----cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHHH
Q 016124 232 LNLAASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEALYIREIA 303 (394)
Q Consensus 232 ~~la~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~ 303 (394)
..+|.+|.... +...|..++.++... ....+.+.+|.++..-. +...|..+|..|..
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~----- 356 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK----- 356 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----
Confidence 78899988753 678899999888762 23457788999888765 56789999988866
Q ss_pred cCCCChhHHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-cCchhhhhhH
Q 016124 304 FGKDSLPVGEALDCLVSIQTRL----GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL-GRKEEKFPLK 378 (394)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~----g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~ 378 (394)
..+. .+...++.+|..- -+.. .|..+++++.+. ++|. +...++..+..- +++..+...+
T Consensus 357 --~G~~---~A~~~la~~y~~G~gv~r~~~-~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 357 --AGHI---LAIYRLALCYELGLGVERNLE-LAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred --cCCh---HHHHHHHHHHHhCCCcCCCHH-HHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHH
Confidence 2333 4677888887653 2344 788888888763 2322 223333333322 7777777766
Q ss_pred HHHHHHHHHHH
Q 016124 379 KRLSNLRMKYK 389 (394)
Q Consensus 379 ~~a~~~~~~~~ 389 (394)
....++.-+..
T Consensus 421 ~~~a~~g~~~~ 431 (552)
T KOG1550|consen 421 LYLAELGYEVA 431 (552)
T ss_pred HHHHHhhhhHH
Confidence 66665554443
No 285
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.55 E-value=0.07 Score=33.01 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124 63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 133 (394)
Q Consensus 63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 133 (394)
.-|.-++...+.++|+..++++++.. .+.++...++..+..+|...|+|.+++.+..+-+++.+..
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555667888999999999998863 3456777888899999999999999999988888877654
No 286
>PRK14707 hypothetical protein; Provisional
Probab=96.47 E-value=1.3 Score=45.61 Aligned_cols=298 Identities=9% Similarity=-0.000 Sum_probs=159.3
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHH--HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS--LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 97 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 97 (394)
..++++.-..++|..+..+-.-+..+....... +..... -..+++++...++|.+...+-.-+..+...+. +++
T Consensus 835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e--~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~ 910 (2710)
T PRK14707 835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLADE--PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEP 910 (2710)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC--hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCH
Confidence 356677777777777766666666555444222 222222 23467778888888888887777777776654 233
Q ss_pred chHh--hhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124 98 DLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA--MCSLAHAKCANGNAEEAVELYKKALRVIK 173 (394)
Q Consensus 98 ~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 173 (394)
.... .-..++.++-...++.++..+-.-+..+...+. .++....+ -..++.++...++|.+...+-.-+..+..
T Consensus 911 ~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa--~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~ 988 (2710)
T PRK14707 911 ELRKALSAHRVATALNALSKWPDIPVCATAASALAERLS--DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAE 988 (2710)
T ss_pred HHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc--cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 3322 233466777777777776665555555555543 22333222 34577777888888776666555555544
Q ss_pred hcccCCCchHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHH--HHHHHHHHHHcccHHHHHHH
Q 016124 174 DSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERL 250 (394)
Q Consensus 174 ~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~ 250 (394)
.. ..+... ....-..+++++....++.++-.+-.-+..+..... ..+..... -..++.++....++.+...+
T Consensus 989 rL---~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~C 1063 (2710)
T PRK14707 989 RL---VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVC 1063 (2710)
T ss_pred HH---hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhH
Confidence 32 111110 011114567777777788766555555555555543 22222221 22455666666666554444
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCC
Q 016124 251 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 328 (394)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 328 (394)
-.-+..+.........-.....-..+++++...-+|.+.-.+-.-++.+...+....++........++.+.-...++
T Consensus 1064 r~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707 1064 LAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred HHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence 443333333321111101111224567777777788777767666676666654433333333333444444444443
No 287
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.45 E-value=0.011 Score=30.89 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 51 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 51 (394)
.++..||.+-...++|++|+.-|++++++.++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999877654
No 288
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.43 E-value=0.016 Score=30.25 Aligned_cols=36 Identities=19% Similarity=-0.065 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124 271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 306 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 306 (394)
.++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999999887643
No 289
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.36 Score=38.71 Aligned_cols=126 Identities=19% Similarity=0.090 Sum_probs=81.1
Q ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124 105 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 184 (394)
Q Consensus 105 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 184 (394)
.-+.-....|++.+|...+..++.. .+....+...++.+|...|+.+.|...+...-.-.. .+...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~------~~~~~ 204 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ------DKAAH 204 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch------hhHHH
Confidence 3455677889999999999999987 333456778899999999999999988876322111 01111
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
...... ..+.......+....-.++ . .+|+.......++..+...|+.++|.+.+-..+.
T Consensus 205 ~l~a~i---~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 205 GLQAQI---ELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHH---HHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111112 2222222322222221111 1 3677778888999999999999999988765554
No 290
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.32 E-value=0.014 Score=49.49 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=81.8
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 016124 63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 142 (394)
Q Consensus 63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 142 (394)
.-+...+..+.|+.|+..|.+|+++ +|..+..+.+.+..+.+.+++..|+.-+.++++. +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3466677888999999999999987 5667777888889999999999999999999986 58888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 143 MAMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
.+|...|..+...+++.+|...|+....+.
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 899999999999999999999999887753
No 291
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.31 E-value=0.76 Score=41.21 Aligned_cols=114 Identities=20% Similarity=0.197 Sum_probs=61.9
Q ss_pred HHHHHHhCcHHHHHHHH------HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016124 107 GSLFIKEGKAVDAESVF------SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 180 (394)
Q Consensus 107 ~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 180 (394)
+.++...|+.++|+... +-++++..++ +......+..++..+.....+.-|.+.|.+.-+.
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 45566667777766543 3344444332 1222233444555555555555565555553221
Q ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124 181 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRIC 254 (394)
Q Consensus 181 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 254 (394)
..+...+...+++++|..+.++ +|. ...++...|..+....++++|.+.|.++
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~------------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEK------------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhh------------CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 2234556677888888766543 222 2234555666667777777777766554
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.28 E-value=0.0035 Score=31.75 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Q 016124 356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 386 (394)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 386 (394)
++++.+|.++...|++++|...|+++++..|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3678999999999999999999999987654
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.3 Score=35.73 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=95.6
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124 107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 186 (394)
Q Consensus 107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (394)
|.-|+..+.-+++-+.|..++++. ..+..++|+..|...-+. .....|.+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lekt------g~g~YpvL- 95 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKT------GYGSYPVL- 95 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhc------CCCcchHH-
Confidence 445566666666666666666543 345667777766654432 12233443
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124 187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 264 (394)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 264 (394)
+....+.+....|+...|+..|.++-... ..|... .+...-+.++...|.|++-....+ ...++
T Consensus 96 -A~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d 161 (221)
T COG4649 96 -ARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGD 161 (221)
T ss_pred -HHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHhh-------hccCC
Confidence 34668888889999999999988764321 233332 233344667778888776554433 33345
Q ss_pred CCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 265 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 265 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
.+|....+...||..-.+.|++.+|..+|.+...
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6777777888899999999999999999987655
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.23 E-value=0.62 Score=39.63 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=105.3
Q ss_pred CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCC---------------------chHHHHHHHHHHHHHH
Q 016124 10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---------------------TSILLVTSLLGMAKVL 68 (394)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~~~~~~~~~l~~~~ 68 (394)
..+|....++..++.++..+|++..|.++.++|+-.+++.+.+ .......+++......
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 4677788899999999999999999999999999877643211 1123455667777888
Q ss_pred HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016124 69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 148 (394)
Q Consensus 69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 148 (394)
.+.|-+..|.++.+-.+.+ .+.. +-..++..+-....+.++++--++.++.......+. .........+.+
T Consensus 114 ~~RG~~rTAlE~~KlLlsL-----dp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSL-----DPDE-DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred HhcCcHHHHHHHHHHHHhc-----CCCC-CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 8999999999999888776 2221 223344555566667788877777666554421110 000112344566
Q ss_pred HHHHHHCCCH---------------HHHHHHHHHHHHHH
Q 016124 149 AHAKCANGNA---------------EEAVELYKKALRVI 172 (394)
Q Consensus 149 a~~~~~~g~~---------------~~A~~~~~~a~~~~ 172 (394)
+.++...++- ++|...+.+|+..+
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 7777777777 88999999998865
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.23 E-value=0.012 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVL 46 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 46 (394)
++++.+|.++...|++++|+..|++.++..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 367899999999999999999999998753
No 296
>PRK14707 hypothetical protein; Provisional
Probab=96.17 E-value=1.9 Score=44.54 Aligned_cols=336 Identities=11% Similarity=0.016 Sum_probs=176.2
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHH--HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS--LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
++.++-...++.+...+-.-+..+..++. ..+..... -..+++++...++|.++..+-..+..+...... .+..
T Consensus 795 vAn~LNALSKWPe~~~Cr~AA~~LA~rLa--~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~L 870 (2710)
T PRK14707 795 MTNALNALSKWPDTPACAAAASALAARVA--DDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPEL 870 (2710)
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHh--cChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--Chhh
Confidence 33444444445444444444444444332 12322222 234677788888888887777777776665432 2222
Q ss_pred Hhh--hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 100 VLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA--MCSLAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 100 ~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
... -..++.++-..+++.+...+-.-+..+...+. +++..... -..++.++....+|.++-.+-.-+..+....
T Consensus 871 R~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rL 948 (2710)
T PRK14707 871 RHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERL 948 (2710)
T ss_pred hhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHh
Confidence 222 23467777777888877777777777766653 23333333 3567777777788777655555444444442
Q ss_pred ccCCCchHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHH--HHHHHHHHHHcccHHHHHHHHH
Q 016124 176 NYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLLR 252 (394)
Q Consensus 176 ~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~ 252 (394)
..++.. -...-..++.++...+++.+.-.+-.-+..+..... +++..... -..++.++....++.++-.+-.
T Consensus 949 ---a~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~ 1023 (2710)
T PRK14707 949 ---SDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAA 1023 (2710)
T ss_pred ---ccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHH
Confidence 111111 011114567778888888776666555555554432 11211111 2245666666667765555555
Q ss_pred HHHHHHHhhcCCCCCcchH--HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH--HHHHHHHHHHHHHhCCC
Q 016124 253 ICLDIMTKTVGPDDQSISF--PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV--GEALDCLVSIQTRLGED 328 (394)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 328 (394)
-+..+...+.+ .+.... .-..++.++....+|.+.-.+-.-+..+...+. +++.. +..-..++.++-...++
T Consensus 1024 AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKW 1099 (2710)
T PRK14707 1024 TVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLS--DDLVLRNALDSQGFGNALNALSKW 1099 (2710)
T ss_pred HHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhh--ccHHHHHhhchHHHHHHHHHHhcC
Confidence 55555544422 222211 224577778788888765555544444444332 22221 11223456666666666
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchh
Q 016124 329 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 373 (394)
Q Consensus 329 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 373 (394)
. +.-.+-+.++.+...+-...++........++.++....++..
T Consensus 1100 P-~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~ 1143 (2710)
T PRK14707 1100 P-DSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPG 1143 (2710)
T ss_pred C-CcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCC
Confidence 6 5555556666666665444444333334445555555555544
No 297
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.84 Score=39.94 Aligned_cols=251 Identities=14% Similarity=0.048 Sum_probs=139.5
Q ss_pred HHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHH
Q 016124 109 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 188 (394)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (394)
.+...+..+. ....+++...+... |..+.....-+.++...|+.+.|+..++.+++.. -......+
T Consensus 240 ~~~~~p~~d~--~~~~~~Ll~~~~~~----p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~--------~kQ~~~l~ 305 (546)
T KOG3783|consen 240 FVLGTPNPDG--EECEKALKKYRKRY----PKGALWLLMEARILSIKGNSEAAIDMESLSIPIR--------MKQVKSLM 305 (546)
T ss_pred HHcCCCCccH--HHHHHHhHHHHHhC----CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH--------HHHHHHHH
Confidence 3344444444 33344444433332 2333345566788888888888888888877621 12333456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH--------HcccHHHHHHHHHHHHHHHHh
Q 016124 189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS--------RSKNFVEAERLLRICLDIMTK 260 (394)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~a~~~~~~ 260 (394)
+..+|.++..+.+|..|...+....+.. +...+..-+..|-++. ..|+-++|-.+++........
T Consensus 306 ~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~ 378 (546)
T KOG3783|consen 306 VFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLAN 378 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 6788999999999999998888766542 1122211122223332 234556666555555443332
Q ss_pred hcCCCCCcchH----------------------HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 016124 261 TVGPDDQSISF----------------------PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL 318 (394)
Q Consensus 261 ~~~~~~~~~~~----------------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 318 (394)
. |.+.|.... -+..++.++. |=..-+..-..++........-.+..+..--+..+
T Consensus 379 a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wn--gf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~ 455 (546)
T KOG3783|consen 379 A-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWN--GFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLK 455 (546)
T ss_pred c-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHh--hcccCChhhHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 1 111111111 1122222222 11111111111211111111111223334445668
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC-chhhhhhHHHHHHHH
Q 016124 319 VSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR-KEEKFPLKKRLSNLR 385 (394)
Q Consensus 319 ~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 385 (394)
|.++..+|+.. .|..+|..+++-. .....++--.+.+++.+|.++..+|. ..++..++.+|.+-.
T Consensus 456 g~~lR~Lg~~~-~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 456 GVILRNLGDSE-VAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHcCCHH-HHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 99999999888 9999999888652 22234445567889999999999999 999999999998765
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.05 E-value=0.3 Score=35.43 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Q 016124 184 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 263 (394)
Q Consensus 184 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 263 (394)
.+...+..+..+-...++.+++..++....-+ .|.....-..-|.++...|++.+|+.+++....
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------- 72 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------- 72 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------
Confidence 34556677777888888999988887644332 466667777789999999999999999998654
Q ss_pred CCCCcchHHHHHHHHHHHhhcChH
Q 016124 264 PDDQSISFPMLHLGITLYHLNRDK 287 (394)
Q Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~ 287 (394)
..+....+--.++.|+..+|+.+
T Consensus 73 -~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 -RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -cCCCChHHHHHHHHHHHHcCChH
Confidence 45666666677888888888864
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.04 E-value=0.81 Score=38.96 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-------------------ccCCCchHHHHHHHHHHHHHHHH
Q 016124 138 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLHI 198 (394)
Q Consensus 138 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~ 198 (394)
+|....++..++.++..+|++..|.+++++|+-.++.. .+..+++.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 56677889999999999999999999999998766532 01112234445566777888899
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 016124 199 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 278 (394)
Q Consensus 199 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 278 (394)
.|-+..|.++.+-.+.+. ...+| ..++..+=....+.++++--++.++.......+. .........+..+.
T Consensus 116 RG~~rTAlE~~KlLlsLd----p~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLD----PDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIAL 186 (360)
T ss_pred cCcHHHHHHHHHHHHhcC----CCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHH
Confidence 999999999998877652 11133 2334444455566777776666666544311000 00012234466777
Q ss_pred HHHhhcCh---------------HHHHHHHHHHHHHH
Q 016124 279 TLYHLNRD---------------KEAEKLVLEALYIR 300 (394)
Q Consensus 279 ~~~~~g~~---------------~~A~~~~~~a~~~~ 300 (394)
++...++- ++|...+.+|+..+
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 88888887 89999999998765
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.90 E-value=0.49 Score=35.79 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=63.6
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHH
Q 016124 257 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 336 (394)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 336 (394)
+.....+..+|.... .++.+-.-++|...|-++ -|....+.+.....||..|.+. +.+ +++.++
T Consensus 100 L~~~tk~S~dP~llY-------y~Wsr~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~kr-D~~-Kt~~ll 163 (203)
T PF11207_consen 100 LQEETKNSQDPYLLY-------YHWSRFGDQEALRRFLQL-------EGTPELETAELQYALATYYTKR-DPE-KTIQLL 163 (203)
T ss_pred HHHHHccCCCccHHH-------HHhhccCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHHcc-CHH-HHHHHH
Confidence 333444455665432 233332335565555433 2344456677788899888754 466 999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhh
Q 016124 337 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF 375 (394)
Q Consensus 337 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 375 (394)
-+++++... ++.-..+++..|+.++..+|+++.|-
T Consensus 164 ~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 164 LRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 999987543 32334677888999999999999874
No 301
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.75 E-value=0.019 Score=48.79 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
-.-+..++..+.|+.|+..|.+++++ +|..+..+.+.+..+...+++..|+.-+.++++. +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34577788889999999999999997 3455556667778889999999999999999886 5888
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
..+|..-|..+...+++.+|...|+....+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999988765
No 302
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.73 E-value=0.0052 Score=49.57 Aligned_cols=91 Identities=21% Similarity=0.143 Sum_probs=78.7
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124 65 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144 (394)
Q Consensus 65 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 144 (394)
+.-....|.+++|++.|..++.+ +|..+..+...+.++..+++...|+.-+..++.+ +++.+.-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG 184 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence 44456778999999999999886 6778888999999999999999999999999987 5666667
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
+-..+.....+|++++|...+..+.++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 777888889999999999999999875
No 303
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.68 E-value=0.86 Score=36.53 Aligned_cols=188 Identities=14% Similarity=0.047 Sum_probs=109.6
Q ss_pred hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCC---c-------hHHHHHHHHHHHHHHHCC--------------CH
Q 016124 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN---D-------GRVGMAMCSLAHAKCANG--------------NA 158 (394)
Q Consensus 103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~ 158 (394)
.+.+..+++..|+..+|+.-+++=+..+....++. . ...+.-+..+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 34567889999999999999999888887765541 1 112333445555544332 12
Q ss_pred HHHHHHHHHHHHHHHhcccCCCc-------------------hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 159 EEAVELYKKALRVIKDSNYMSLD-------------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 159 ~~A~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
..|-.+...--+...... ..|+ ++.....+................++++.+|+..+...
T Consensus 93 ~~AA~~~~~Rr~~a~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIP-PDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHhcc-CCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 233333322222222210 0011 00000000000100111223456678888888887765
Q ss_pred hCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHH
Q 016124 220 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 295 (394)
Q Consensus 220 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (394)
. ...........+|..|...|++++|..+|+.+...+++- +-..-...++..+..|+...|+.+..+.+.-+
T Consensus 172 ~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 172 G--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred c--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4 234455566789999999999999999999997766543 23344556677888899999998877665544
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.60 E-value=0.32 Score=32.67 Aligned_cols=102 Identities=20% Similarity=0.110 Sum_probs=59.5
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh----CcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124 64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDG 139 (394)
Q Consensus 64 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 139 (394)
.+.-++..|++-+|+++.+..+.... ++......+..-|.++..+ .+.+-=..++.-+++-+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 35677889999999999999887632 2222234555567666554 3333333444444444433211 145
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
..+..++.+|.-+.....|+++..-.++++.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 55667777776665555566666666665543
No 305
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=1.2 Score=37.73 Aligned_cols=195 Identities=17% Similarity=0.139 Sum_probs=133.0
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
+-.......+..+.++....++..|...+.+..-.+.+ +........++..++.++.+.+..-.+..+.-.++....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 33444566777889999999999999999888765443 2234456677888888888888888888888887776655
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-----HHHHHHHHHHHHHHcccHHHHHH
Q 016124 175 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-----FVTHLLNLAASYSRSKNFVEAER 249 (394)
Q Consensus 175 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 249 (394)
- . .+...+..-.+++......|-.+.|...+..++....-.+|-+... .+.++..-+.. ....+.+.+..
T Consensus 346 y---~-ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s-~~~e~ld~~~~ 420 (482)
T KOG4322|consen 346 Y---S-LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALS-CANESLDGFPR 420 (482)
T ss_pred h---c-cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhh-hhhhhHHhhHH
Confidence 2 2 2222344447788899999999999999999988765444322211 01111111111 15567788888
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHH---HHHHHHHHHH
Q 016124 250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE---AEKLVLEALY 298 (394)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~ 298 (394)
+++++-+++.+. ..+..+..+.+-++..|-..|+.++ +...|+++..
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 888888887776 4556677888889999999998654 4445555543
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.39 E-value=0.41 Score=32.12 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=54.5
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHHHHHhcCCCCc
Q 016124 22 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG----RAKKAVEIYHRVITILELNRGTESA 97 (394)
Q Consensus 22 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~ 97 (394)
.+.-++..|++-+|++..+..+....+ +......+..-|.++..++ +.+-=..++.-+++-+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 467788999999999999998876422 2222244555666665543 333333444444444433221 134
Q ss_pred chHhhhHhHHHHHHHhCcHHHHHHHHHHHH
Q 016124 98 DLVLPLFSLGSLFIKEGKAVDAESVFSRIL 127 (394)
Q Consensus 98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 127 (394)
..+..++.+|.-+...-.|+++..-.++++
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445555555554444444444444444444
No 307
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.38 E-value=1.4 Score=36.98 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=90.0
Q ss_pred CCccHHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124 223 EHPSFVTHLLNLAASYSRSKN------------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 290 (394)
Q Consensus 223 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (394)
.+|....++..+....-..-. .+.-+.++++|++ . +|.....+..+-.+.....+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~-------~-np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK-------H-NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH-------h-CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 456666666666554433322 2344455555555 2 4555555555555666666777777
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCC----------CHHHHHHHHH
Q 016124 291 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE----------SEEVMLTLKK 360 (394)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~ 360 (394)
+-+++++... ++.+..-..+...-......-.+. .....|.+++.......... ......+...
T Consensus 86 ~~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~-~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 86 KKWEELLFKN-----PGSPELWREYLDFRQSNFASFTVS-DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 7777776642 333433333322222222233455 78888888887766554332 2345667778
Q ss_pred HHHHHHHhcCchhhhhhHHHHHHHH
Q 016124 361 VVSYLDKLGRKEEKFPLKKRLSNLR 385 (394)
Q Consensus 361 la~~~~~~g~~~~A~~~~~~a~~~~ 385 (394)
+.......|..+.|...++-.+++.
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888999999999999999988764
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.79 Score=33.64 Aligned_cols=124 Identities=12% Similarity=-0.071 Sum_probs=83.6
Q ss_pred HcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHH--HH
Q 016124 240 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL--DC 317 (394)
Q Consensus 240 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 317 (394)
..+..++|+.-|...-+ ..-...| .-+....+.+....|+...|+..|.++-.. ...|....-+ ..
T Consensus 70 ~~~k~d~Alaaf~~lek----tg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlr 137 (221)
T COG4649 70 QENKTDDALAAFTDLEK----TGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLR 137 (221)
T ss_pred HcCCchHHHHHHHHHHh----cCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHH
Confidence 34666777777765433 1111122 345577899999999999999999886542 1234433222 23
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 318 LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 318 l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
-+.++...|.++ ......+.+.++.+|-...+...||..-.+.|++..|..+|.+...
T Consensus 138 aa~lLvD~gsy~--------dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYD--------DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHH--------HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344555566554 4444455556778888888999999999999999999999998764
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.29 E-value=0.48 Score=34.39 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh
Q 016124 55 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 134 (394)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 134 (394)
...+..+..+..+-...++.+++..++....-+ .|.....-..-|.++...|++.+|+..++....
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 345666777777778888999998887755444 566677777889999999999999999998643
Q ss_pred CCCchHHHHHHHHHHHHHHHCCCHH
Q 016124 135 GENDGRVGMAMCSLAHAKCANGNAE 159 (394)
Q Consensus 135 ~~~~~~~~~~~~~la~~~~~~g~~~ 159 (394)
..+....+--.++.|+...|+++
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 23444445566788888888754
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.18 E-value=0.081 Score=46.31 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
+.-|..|...|+...|+.++..|+..... .....+.+++.+....|-.-+|-.++.+++.+. ...
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~se 675 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSE 675 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccC
Confidence 44566777899999999999999875321 223346788999999999999999999999884 122
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
.-..+.+|.++..+.+.+.|++.+++|++.
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 345678899999999999999999999986
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.14 E-value=1 Score=34.11 Aligned_cols=78 Identities=21% Similarity=0.116 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 016124 243 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ 322 (394)
Q Consensus 243 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (394)
.-++|...|-++- +......+.....||..|. ..+.++|+.++.++++... +++......+..|+.++
T Consensus 121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHH
Confidence 3355665554432 2344566778888887776 6688999999999998763 23233456788999999
Q ss_pred HHhCCCchHHH
Q 016124 323 TRLGEDDTKLL 333 (394)
Q Consensus 323 ~~~g~~~~~A~ 333 (394)
.+.|+++ .|-
T Consensus 189 ~~~~~~e-~AY 198 (203)
T PF11207_consen 189 QKLKNYE-QAY 198 (203)
T ss_pred HHhcchh-hhh
Confidence 9999988 653
No 312
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.99 E-value=0.33 Score=27.73 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 271 FPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
.+++.+|..+.+.|+|++|..+.+.++++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 357889999999999999999999999865
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.92 E-value=0.036 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHhh
Q 016124 356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV 392 (394)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 392 (394)
+.++.+|..+.+.|+|++|..+.+.++++.|...|..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4678899999999999999999999999998877653
No 314
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=1.7 Score=35.47 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Q 016124 183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 262 (394)
Q Consensus 183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 262 (394)
.....++.+.|..|.+.|+-+.|.+.+.+..+-....+ ...++..+...+|..|....-..+.++ ++-.+.++-
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~lV~~~ie---kak~liE~G- 174 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHDLVTESIE---KAKSLIEEG- 174 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHHHHHHHHH---HHHHHHHhC-
Confidence 44567778999999999999999999998776543332 334566667778888866544444333 333333322
Q ss_pred CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
.+....-+.-..-|.......++.+|..+|-.++..+
T Consensus 175 -gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 175 -GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred -CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 2222122222334666677788999988888877654
No 315
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=3 Score=37.59 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCc
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 97 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 97 (394)
++.+-|.-.++..+|..++++|...+...... ..+...+.....+..||....+.+.|.+++++|-+. +|
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------d~ 425 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------DR 425 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------cc
Confidence 34555667788899999999999988765432 123356788899999999999999999999998765 33
Q ss_pred chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 016124 98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 131 (394)
Q Consensus 98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 131 (394)
...-....+..+....|.-++|+...........
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 4444455556667778888899888877665543
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.75 E-value=0.052 Score=26.72 Aligned_cols=29 Identities=21% Similarity=0.629 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINV 45 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 45 (394)
.++..+|.++...|++++|+..+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45788999999999999999999998875
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.72 E-value=1 Score=32.20 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Q 016124 186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 265 (394)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 265 (394)
...+..+...-...++.+++..++...--+ .|.....-..-|.++...|++.+|+..++...+ +
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------~ 73 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLS--------S 73 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc--------c
Confidence 344455566666688999988877644322 455556666789999999999999999988755 2
Q ss_pred CCcchHHHHHHHHHHHhhcChH
Q 016124 266 DQSISFPMLHLGITLYHLNRDK 287 (394)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~ 287 (394)
.+....+.-.++.|+..+|+.+
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCCchHHHHHHHHHHHhcCChH
Confidence 3333445556778888888753
No 318
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.71 E-value=0.36 Score=40.43 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHh--
Q 016124 14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN-- 91 (394)
Q Consensus 14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 91 (394)
.+..++..+|..|...|+++.|+..|.++-+.+.. ....+..+.++..+-...|+|..-..+..+|.......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 34567889999999999999999999998777643 34677788888899999999999888888876652110
Q ss_pred cCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHH
Q 016124 92 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 127 (394)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 127 (394)
....-+....+. -|.+....++|..|..+|-.+.
T Consensus 223 ~~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 223 LAQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhCC
Confidence 001122223333 3445555668999888886653
No 319
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.69 E-value=0.011 Score=47.78 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=78.9
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchH
Q 016124 21 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 100 (394)
Q Consensus 21 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 100 (394)
.-+.-.+..|.+++|+..|..++.+ .|..+..+...+.++...++...|+.-+..++.+ +++.+
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa 182 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSA 182 (377)
T ss_pred HHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccc
Confidence 3455567789999999999999876 3556777888899999999999999999999887 56777
Q ss_pred hhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 101 LPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
.-+-..|.....+|++.+|...+..+.++
T Consensus 183 ~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 183 KGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 77888889999999999999999998875
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.61 E-value=0.06 Score=25.40 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHH
Q 016124 271 FPMLHLGITLYHLNRDKEAEKLVL 294 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~ 294 (394)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998876
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.59 E-value=2.4 Score=35.62 Aligned_cols=147 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred CcchHhhhHhHHHHHHHhCc------------HHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHH
Q 016124 96 SADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 163 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 163 (394)
+|....++..+....-..-. .+.-+..+++|++. .+++...... +-.......+.++...
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~~L~l~---~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSERLLLG---YLEEGEKVWDSEKLAK 86 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHhCCHHHHHH
Confidence 45555555555544333222 33445566666654 2334443333 3334456667777777
Q ss_pred HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----------CccHHHHHHH
Q 016124 164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLLN 233 (394)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~ 233 (394)
-+++++.. .+..+.+...|...-......-.++.....|.+++.......... ......++..
T Consensus 87 ~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 87 KWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 78887774 345556565555554444555678899999999988776554322 1234556677
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHH
Q 016124 234 LAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 234 la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
+.......|..+.|+..++-.+++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHH
Confidence 888889999999999999998885
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.58 E-value=0.061 Score=26.46 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=25.8
Q ss_pred hhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 101 LPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
.++..+|.++...|++++|...+++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778999999999999999999998865
No 323
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.57 E-value=1.9 Score=34.28 Aligned_cols=185 Identities=16% Similarity=0.112 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG 139 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 139 (394)
+..++.+....|+|++...+.++++... ......=.+.++.+|-. .|....+...+.......+ +..++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence 4567889999999999999999988761 11222223334444422 2333333333332222111 11111
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC-CchHHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS-LDDSIMENMRIDLAELLHIV-----G-----RGQEGREL 208 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 208 (394)
..... ..-|. ..=-++=...+..++.+......+. .+.......+-..|..|.-. | -.++|...
T Consensus 74 ~~~~~----i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 74 KQVKL----IKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 11111 11110 0001233344555555554431111 12223333333445554432 1 13679999
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHh
Q 016124 209 LEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIMTK 260 (394)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~ 260 (394)
|++|+.+.....++.+|.......+.+..| .-.|+.++|+...+++++-...
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999988888998887777777766 4589999999999988875443
No 324
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.55 E-value=2.3 Score=35.21 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=106.2
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh----hchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124 27 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GRAKKAVEIYHRVITILELNRGTESADLVLP 102 (394)
Q Consensus 27 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 102 (394)
...+++..+...+..+-.. ..+ .....++.+|... .+..+|..+|+.+.+ ......
T Consensus 52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence 3556777777777766541 111 4555666666543 357778888885433 234567
Q ss_pred hHhHHHHHHH----hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH
Q 016124 103 LFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-------NAEEAVELYKKALRV 171 (394)
Q Consensus 103 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~ 171 (394)
.+.||.+|.. ..+..+|..+|.++... .++.-..+...++.+|..-+ +...|...|.++...
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 7789998887 45899999999999875 22222344677777776642 223677777777664
Q ss_pred HHhcccCCCchHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcc
Q 016124 172 IKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 242 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 242 (394)
. ...+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 185 ~------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 G------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred c------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 2 13344678877754 34789999999998763 12 55667777 555555
No 325
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.47 E-value=0.15 Score=35.34 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 311 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES-EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 311 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
...+.+++++++....+.+ ..++-+.+.+.++...+ ....+.++.|+..+.+.++|++++.+....++..++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~-----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTE-----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchH-----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3456788999988877655 24455555555554233 35567888999999999999999999998888876666
Q ss_pred Hh
Q 016124 390 QK 391 (394)
Q Consensus 390 ~~ 391 (394)
|.
T Consensus 106 Qa 107 (149)
T KOG3364|consen 106 QA 107 (149)
T ss_pred HH
Confidence 54
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.46 E-value=0.044 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCchhhhhhHHH
Q 016124 357 TLKKVVSYLDKLGRKEEKFPLKKR 380 (394)
Q Consensus 357 ~~~~la~~~~~~g~~~~A~~~~~~ 380 (394)
+...+|.++...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998764
No 327
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.27 E-value=1.1 Score=30.56 Aligned_cols=74 Identities=12% Similarity=-0.006 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH-------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124 273 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV-------GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 345 (394)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~ 345 (394)
+..+|......+++-.++-.|++|+.+.++.......+. ..+..+||..+...|+.+ -.+.+++-|-+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~-yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSD-YELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence 457888889999999999999999999888742222211 345678999999999998 889998888765554
Q ss_pred hc
Q 016124 346 EF 347 (394)
Q Consensus 346 ~~ 347 (394)
+.
T Consensus 83 Li 84 (140)
T PF10952_consen 83 LI 84 (140)
T ss_pred hc
Confidence 43
No 328
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.16 E-value=2.4 Score=33.98 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 016124 115 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 194 (394)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~ 194 (394)
.....++++.+|+..+.... ...........+|..|...|++++|..+++.+...+++. .-......++..+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e----gW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE----GWWSLLTEVLWRLLE 226 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHH
Confidence 34456788888888877642 233445566789999999999999999999998877652 334556677788999
Q ss_pred HHHHcCChHHHHHHHHH
Q 016124 195 LLHIVGRGQEGRELLEE 211 (394)
Q Consensus 195 ~~~~~g~~~~A~~~~~~ 211 (394)
++...|+.+..+.+.-+
T Consensus 227 Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 99999998887766544
No 329
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.15 E-value=2.8 Score=34.67 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=107.5
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh----CcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124 68 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVGM 143 (394)
Q Consensus 68 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 143 (394)
....+++..+...+..+-.. .. ......++.+|... .+..+|..+|..+.+ .....
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~ 110 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL-------GD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAE 110 (292)
T ss_pred ccccccHHHHHHHHHHhhhc-------CC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHH
Confidence 34556777777777776542 11 14566677776653 457778888874433 22344
Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Q 016124 144 AMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------RGQEGRELLEEC 212 (394)
Q Consensus 144 ~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a 212 (394)
+.+.+|.+|.. ..++.+|..+|.++.+.- ..+. ..+...++..|..-. +...|..+|.++
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-------~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-------NVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------ChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 67778988877 458999999999998742 1111 223466777666542 223677777766
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc
Q 016124 213 LLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 284 (394)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 284 (394)
-... ...+...+|.+|.. ..++.+|..+|.++.+. .+ ....+.++ ++...|
T Consensus 182 a~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 182 AELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 5431 34567788888755 34889999999999872 22 56677788 666655
No 330
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.14 E-value=0.22 Score=42.47 Aligned_cols=137 Identities=13% Similarity=0.004 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhC----CC--CccHHHHHH----HHHHHHHHcccHHHHHHHHHHH
Q 016124 186 ENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKG----KE--HPSFVTHLL----NLAASYSRSKNFVEAERLLRIC 254 (394)
Q Consensus 186 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~----~~--~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~a 254 (394)
..++..+|..+... .+.-.|..++.++++....... .. .|..+.-+. +...+-.-.++.++ .--++
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence 33444555555433 3466788888888877654110 01 111111111 11111112222221 22356
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 016124 255 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 325 (394)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (394)
+-+.++++|+.||++.......|-+|...|+++.-++++.-|+.+.++.+.|-.|.+..++...+.++...
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 67778899999999888777889999999999999999999999999999999999998888888876543
No 331
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.13 E-value=0.99 Score=29.38 Aligned_cols=72 Identities=21% Similarity=0.131 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124 266 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 345 (394)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~ 345 (394)
+|....+.+.+|..+...|++++|++.+-.++... +.. +.+ .|.+.+-..+++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d--------r~~---------------~~~-~ar~~ll~~f~~--- 70 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD--------RDY---------------EDD-AARKRLLDIFEL--- 70 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---------TTC---------------CCC-HHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------ccc---------------ccc-HHHHHHHHHHHH---
Confidence 56777889999999999999999998887776532 111 222 555544444433
Q ss_pred hcCCCCHHHHHHHHHHHHHH
Q 016124 346 EFGSESEEVMLTLKKVVSYL 365 (394)
Q Consensus 346 ~~~~~~~~~~~~~~~la~~~ 365 (394)
+|+.+|.+......|+.++
T Consensus 71 -lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 71 -LGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp -H-TT-HHHHHHHHHHHHHH
T ss_pred -cCCCChHHHHHHHHHHHHh
Confidence 4666777777777776654
No 332
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=2.5 Score=33.96 Aligned_cols=134 Identities=18% Similarity=0.091 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 016124 157 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 236 (394)
Q Consensus 157 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 236 (394)
.-++-++-+.+.++-.+.. ........++.++|..|...++.+.+.+++.+.+.-..... -..++..+...+|.
T Consensus 90 kneeki~Elde~i~~~eed----ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~ 163 (412)
T COG5187 90 KNEEKIEELDERIREKEED----NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGL 163 (412)
T ss_pred hhHHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHH
Confidence 3445556666666554432 12344567889999999999999999999998877544332 23455566677888
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124 237 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301 (394)
Q Consensus 237 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 301 (394)
+|..+.-.++.++.....++ + |.+....-+.-...|.......++.+|..++-..+..+.
T Consensus 164 ~y~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 164 IYGDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hhccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 88766656665555554444 2 222222222223446666777888888888877766543
No 333
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.03 E-value=3.9 Score=35.85 Aligned_cols=178 Identities=16% Similarity=0.037 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHH
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG-------QEGRELLEECLLIT 216 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~ 216 (394)
....+|+.++..|+|+-|...|+.+.+-+.. +......+.+....|.+....+.. +....+++.|+..+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 4678999999999999999999998886643 123444556666666666666643 47778888888877
Q ss_pred HHhhCC---CCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHH--HhhcChHH
Q 016124 217 EKYKGK---EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS---ISFPMLHLGITL--YHLNRDKE 288 (394)
Q Consensus 217 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~ 288 (394)
.....+ .......+....+.++...|.+.+|...+-+.....- ..... .+..+-.+|.++ ........
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~~ 361 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPSP 361 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCCc
Confidence 663211 1224555667778888888998888777666554311 00111 223333444444 11000000
Q ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124 289 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 345 (394)
Q Consensus 289 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~ 345 (394)
-.. .....+.-+..-|.-|.+.|+.. .|..+|.+++.++..
T Consensus 362 ~~~---------------r~RK~af~~vLAg~~~~~~~~~~-~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 362 GLT---------------RFRKYAFHMVLAGHRYSKAGQKK-HALRCYKQALQVYEG 402 (414)
T ss_pred cch---------------hhHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHhCC
Confidence 000 01122223334567889999999 999999999988763
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.97 E-value=0.2 Score=44.09 Aligned_cols=94 Identities=23% Similarity=0.371 Sum_probs=74.4
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 016124 64 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 143 (394)
Q Consensus 64 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 143 (394)
-|..+...|+...|+.++..|+... .......+.+|+.+..+.|-..+|-.++.+++.+.- ..| .
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep---l 677 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP---L 677 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc---h
Confidence 3555667899999999999988652 222334577899999999999999999999998741 123 3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
....+|.++..+.+.+.|++.+++|++..
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 46678999999999999999999999853
No 335
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=3.7 Score=35.08 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=132.0
Q ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124 137 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 216 (394)
Q Consensus 137 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 216 (394)
+-..........+.++....++..|...+.+..-.+.. +........++..++.++.+.+..-.+..+.-.++...
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k----~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK----GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 34445566677899999999999999999988765543 34455667777888888888888778888777777665
Q ss_pred HHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHHHhhcChHHHHH
Q 016124 217 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-----ISFPMLHLGITLYHLNRDKEAEK 291 (394)
Q Consensus 217 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 291 (394)
.+.. .+...+..-..++..+...|.++.|...+..++....-..|-+... .+.++..-+..+ ...+.+.+..
T Consensus 344 sey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~ 420 (482)
T KOG4322|consen 344 SEYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR 420 (482)
T ss_pred HHhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence 5442 1222344455788888999999999999999988654433322111 111111112112 4567788888
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCc--hHHHHHHHHHH
Q 016124 292 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD--TKLLELLKRVL 340 (394)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~A~~~~~~al 340 (394)
+++++-.++.+. .-|..+..+.+.++..|-..|+.+ +++...|+++.
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 888888887765 456667888889999999999865 13444455544
No 336
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.63 E-value=1.9 Score=36.43 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=74.4
Q ss_pred chHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016124 98 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 177 (394)
Q Consensus 98 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 177 (394)
....++..+|.-|...|+++.|++.|.++.+.+.. ...+...+.++-.+-...|+|..-..+..+|.........
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 34567889999999999999999999998887654 4566777888888888999999988888888765210000
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016124 178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 212 (394)
Q Consensus 178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 212 (394)
....-+....+. -|.+....++|..|..++-.+
T Consensus 223 ~~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 223 LAQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 001111112333 344555566888888877554
No 337
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=3.5 Score=33.84 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhC
Q 016124 35 SMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG 114 (394)
Q Consensus 35 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 114 (394)
-++-+.+.++-.++..| .....+++.+.+..|++.|+-+.|.+.+.+..+-.-... ...+..-....+|..|....
T Consensus 83 ki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~ 158 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHD 158 (393)
T ss_pred HHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHH
Confidence 34445555555444433 246778899999999999999999999988765433322 23344555666777765543
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 115 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
-.. +..+++-.+.++ |.+....-+.-..-|.......+|.+|-.+|-.++..+..
T Consensus 159 lV~---~~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 159 LVT---ESIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHH---HHHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 333 333344444443 2232222222333455666778899999999888876543
No 338
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.56 E-value=2.5 Score=35.99 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCch------HH----HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS------IL----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 88 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 88 (394)
-..=|...+++++|..|..-|..+++++.+...... .+ ...+...+..||...++.+-|+....+.+.+
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l- 257 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL- 257 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-
Confidence 344566778899999999999999999876422111 11 2223456889999999999999998888765
Q ss_pred HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124 89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130 (394)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 130 (394)
+|....-+..-+.++..+.+|.+|-.-+--+.-++
T Consensus 258 -------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 -------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred -------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677778999999999999987776665544
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.33 E-value=2.1 Score=30.63 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124 57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 136 (394)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 136 (394)
....+..+...-...++.+++..++....-+ .|.....-..-|.++...|++.+|+..++...+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 3444555555555688888888877654433 4566667777899999999999999999887642
Q ss_pred CchHHHHHHHHHHHHHHHCCCHH
Q 016124 137 NDGRVGMAMCSLAHAKCANGNAE 159 (394)
Q Consensus 137 ~~~~~~~~~~~la~~~~~~g~~~ 159 (394)
.+......-.++.|+..+|+.+
T Consensus 74 -~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 -AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -CCCchHHHHHHHHHHHhcCChH
Confidence 2222334455677777777753
No 340
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.29 E-value=3.4 Score=32.83 Aligned_cols=185 Identities=13% Similarity=0.057 Sum_probs=99.8
Q ss_pred hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhcccCCCc
Q 016124 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-ANGNAEEAVELYKKALRVIKDSNYMSLD 181 (394)
Q Consensus 103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 181 (394)
+..++.+....|+|++...+.++++... ......-.+.++.+|- ..|....+...+.......+.. +.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~----~~ 72 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK----GN 72 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc----ch
Confidence 4567888999999999999999998761 1111122233333332 1233334444443333322211 11
Q ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--Ccc-HHHHHHHHHHHHHHc-----c-----cHHHHH
Q 016124 182 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPS-FVTHLLNLAASYSRS-----K-----NFVEAE 248 (394)
Q Consensus 182 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~la~~~~~~-----g-----~~~~A~ 248 (394)
......+....-.+ -++=...+..++.+.....-+. .+. .+..+-..|..|.-. | -.+.|.
T Consensus 73 ~~~~~~i~~yk~ki------e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 73 EKQVKLIKDYKKKI------EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 11111100001111 1222334444555444432111 111 111222234443321 2 247899
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH-hhcChHHHHHHHHHHHHHHHHHc
Q 016124 249 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREIAF 304 (394)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~ 304 (394)
..|++|+.+....+++.+|.......+.+..|. ..|+.++|....+++++.....+
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence 999999999999888999988888888887764 48999999999999988765443
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.20 E-value=2.2 Score=34.54 Aligned_cols=77 Identities=17% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCC
Q 016124 227 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 306 (394)
Q Consensus 227 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 306 (394)
...++..++..+...|+++.+.+.+++.+. .+|..-..+..+-..|...|+...|+..|++.-.....-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 456778899999999999999999998887 467777888999999999999999999999998876666665
Q ss_pred CChhH
Q 016124 307 DSLPV 311 (394)
Q Consensus 307 ~~~~~ 311 (394)
+....
T Consensus 224 ~P~~~ 228 (280)
T COG3629 224 DPAPE 228 (280)
T ss_pred CccHH
Confidence 55443
No 342
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.06 E-value=3.7 Score=35.02 Aligned_cols=107 Identities=15% Similarity=0.008 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC---cc-------HHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 016124 186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH---PS-------FVTHLLNLAASYSRSKNFVEAERLLRICL 255 (394)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 255 (394)
..+-..=|..++++++|..|..-|..+++++.+..-... +. ...+...|..||...++++-|+....+++
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 333345577788899999999999999998876432111 11 12234578899999999999999988887
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 256 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
. .+|....-+...|.++....+|.+|...+--+.-++
T Consensus 256 ~--------lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 256 N--------LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred h--------cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 356666667778889999999999988776655444
No 343
>PRK10941 hypothetical protein; Provisional
Probab=92.70 E-value=3.3 Score=33.60 Aligned_cols=74 Identities=15% Similarity=0.025 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCC
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 307 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 307 (394)
...+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.+.|.+..|..-++..++.. |+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~ 247 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PE 247 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CC
Confidence 456678888999999999999999999884 34445566788999999999999999999888765 56
Q ss_pred ChhHHHH
Q 016124 308 SLPVGEA 314 (394)
Q Consensus 308 ~~~~~~~ 314 (394)
.|.....
T Consensus 248 dp~a~~i 254 (269)
T PRK10941 248 DPISEMI 254 (269)
T ss_pred chhHHHH
Confidence 6654433
No 344
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.69 E-value=1.8 Score=28.14 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=27.4
Q ss_pred CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
+|....+.+.+|..+...|++++|++.+-.++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577778999999999999999999998877765
No 345
>PRK10941 hypothetical protein; Provisional
Probab=92.49 E-value=3.8 Score=33.26 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124 56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130 (394)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 130 (394)
...+.+.++-.++...++++.|+.+.+..+.+ .|+.+.-+...|.+|..+|.+..|..-++..++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45667788889999999999999999999987 34445566778999999999999999999988874
No 346
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.49 E-value=4.9 Score=32.55 Aligned_cols=207 Identities=15% Similarity=0.066 Sum_probs=102.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHhhCCCCccH
Q 016124 149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKEHPSF 227 (394)
Q Consensus 149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~ 227 (394)
+..+.+.|++..|.++..-.++.+.+. ..+.+. ....+++.+....+.-+ +-..+.+++++.. + .+......
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~--~~~~~~---~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gd 89 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKS--EDPVDE---ESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGD 89 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHT--T---SH---HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCC
Confidence 334455566666666555555555542 111111 11245555555554333 3456667777766 2 23333445
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH--------HHHhhcCCCCCcchHH-HHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLD--------IMTKTVGPDDQSISFP-MLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
...+..+|..+.+.|++.+|..+|-.+-. +.........+..... ......-|...|+...|...+..-.+
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66788899999999999999988732210 1111111111222222 23334456778999999988887776
Q ss_pred HHHHH----------cCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 016124 299 IREIA----------FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL 368 (394)
Q Consensus 299 ~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 368 (394)
..... ..+..|. ......|-.+ ... ++...|....+.+...+. .+|.....+..+|..|...
T Consensus 170 ~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t-~e~-----~~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 170 KLIESHPKLENSDIEYPPSYPL-LNFLQLLLLT-CER-----DNLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHH---EEEEEEEEESS-HH-HHHHHHHHHH-HHH-----T-HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH--
T ss_pred HHhccCcchhccccCCCCCCch-HHHHHHHHHH-Hhc-----CcHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCC
Confidence 53332 0112221 1111112222 222 234567776666655443 3467778889999999875
Q ss_pred cC
Q 016124 369 GR 370 (394)
Q Consensus 369 g~ 370 (394)
..
T Consensus 242 ~~ 243 (260)
T PF04190_consen 242 QP 243 (260)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=9.4 Score=35.89 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124 38 VYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 87 (394)
Q Consensus 38 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 87 (394)
.|.-|+.+.+.. +.+......++...|..++..|++++|...|-+++..
T Consensus 349 ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 349 LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 344455554443 3344567778888999999999999999999988765
No 348
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.22 E-value=0.38 Score=41.07 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 132 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 132 (394)
+..+.+++.-.|+|..|++.++..---.+.....-.+-...+++.+|-+|+.+++|.+|+..|...+-...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999999887643211111222234455678889999999999999999999998876544
No 349
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.21 E-value=8 Score=34.36 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124 10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 86 (394)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 86 (394)
.++|....+|+.|-.-+..+ -+++....|++.+... |....++...........+|+.-+.+|.+++.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--------PSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35677778888888887777 8999999999988753 33444555556667777888888888888865
No 350
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.19 E-value=2.7 Score=28.84 Aligned_cols=74 Identities=12% Similarity=0.053 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124 189 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 261 (394)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 261 (394)
+..+|......+++-.++-.|++|+.+.++.......+ ......|||..+..+|+.+-.+++++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 35688888999999999999999999988774222111 23456799999999999999999999887755544
Q ss_pred c
Q 016124 262 V 262 (394)
Q Consensus 262 ~ 262 (394)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 351
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.08 E-value=0.44 Score=40.67 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 90 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 90 (394)
+..|.+++.-.|+|..|++.++..---....+..-.+..+..++.+|.+|..+++|.+|++.|...+-...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999987653211112233334566778999999999999999999999999877654
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.88 E-value=20 Score=38.28 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=75.8
Q ss_pred CCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124 266 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 345 (394)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~ 345 (394)
......+|...|++....|+++.|...+-.|.+.. ...+....|..+...|+.. .|+..+++.++....
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~-~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDEL-NALSVLQEILSKNFP 1734 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHH-HHHHHHHHHHHhhcc
Confidence 45678899999999999999999999888876632 2346778899999999999 999999999966533
Q ss_pred h-cCC--CCHH------HHHHHHHHHHHHHHhcCc--hhhhhhHHHHHHHHHH
Q 016124 346 E-FGS--ESEE------VMLTLKKVVSYLDKLGRK--EEKFPLKKRLSNLRMK 387 (394)
Q Consensus 346 ~-~~~--~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~ 387 (394)
- .++ +.|. ...+...++......|++ ++-+.+|..+.++.++
T Consensus 1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 2 111 0111 122344455555566663 2334566666666553
No 353
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=7.4 Score=33.15 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=95.8
Q ss_pred HHhhchhHHHHHHHHHHHHHHHhcC-CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 016124 69 GSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 147 (394)
Q Consensus 69 ~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 147 (394)
+...++.+|...-+..+.-...... .-+--.+.+++.+..+|...|+...-...+..-+... .++.+....+...+.
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL 214 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence 4457888888877665543211000 0012345677888888888898777666666555443 234455566667788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016124 148 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 216 (394)
Q Consensus 148 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 216 (394)
+-..|...+.|+.|.....++.- +....+...++..+.+|.+..-+++|..|.+++-.|+...
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~------pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVY------PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccC------ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 88899999999999887766532 1122344667788899999999999999999999988753
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.80 E-value=1.2 Score=24.20 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 146 CSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 146 ~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
..+|..|...|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.72 E-value=7.5 Score=34.31 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=14.9
Q ss_pred hhhHhHHHHHHHhCcHHHHHHHHHHH
Q 016124 101 LPLFSLGSLFIKEGKAVDAESVFSRI 126 (394)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~A~~~~~~a 126 (394)
..|..||......|+++-|+.+|+++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34555566666666666666555554
No 356
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=6.3 Score=31.84 Aligned_cols=132 Identities=16% Similarity=0.058 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh
Q 016124 34 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 113 (394)
Q Consensus 34 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (394)
+-+.-+.+.++-.+... ......+++.++|..|.+.++.+.+.+...+.++-.-... -..+..-+...+|.+|..+
T Consensus 93 eki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 93 EKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhccH
Confidence 33444545554443322 2346788999999999999999999999988876543322 2234444556677776555
Q ss_pred CcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 114 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
.-.++.++... .+.++ |.+....-+.-...|.......+|.+|-.++...+..+..
T Consensus 169 ~vV~e~lE~~~---~~iEk--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 169 KVVEESLEVAD---DIIEK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHH---HHHHh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 44444444333 33333 2232222223334455666777889998888888776543
No 357
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=91.44 E-value=9.3 Score=33.56 Aligned_cols=176 Identities=13% Similarity=0.031 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhch-------hHHHHHHHHHHHHHHH
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-------KKAVEIYHRVITILEL 90 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~ 90 (394)
....+|..++..|+|+-|...|+.+.+-+... ......+.++-..|.+....+.. ++...+++.|...+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 35789999999999999999999887765321 11123444555555666555533 3777888888887766
Q ss_pred hcC---CCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHCCCHHHHHHH
Q 016124 91 NRG---TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR---VGMAMCSLAHAKCANGNAEEAVEL 164 (394)
Q Consensus 91 ~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~ 164 (394)
... ........+....+.++...|.+.+|...+-+.....- ..... .+..+-.+|.+|
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~------------ 351 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCY------------ 351 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhh------------
Confidence 321 11224455667778888889998888877666654421 01111 333444555555
Q ss_pred HHHHHHHHHhcccCCCc---hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124 165 YKKALRVIKDSNYMSLD---DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 217 (394)
Q Consensus 165 ~~~a~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 217 (394)
...... ...+. ....+.-+..-|.-|...|+...|..+|.+++.++.
T Consensus 352 -----~~~~~~-~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 -----ASLRSN-RPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -----cccccC-CCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000000 00011 111122223346778899999999999999998875
No 358
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=91.42 E-value=0.19 Score=42.80 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcc--cC--CCchHHHHHHHH----HHHHHHHHcCChHHHHHHHHHH
Q 016124 142 GMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSN--YM--SLDDSIMENMRI----DLAELLHIVGRGQEGRELLEEC 212 (394)
Q Consensus 142 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~--~~--~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~a 212 (394)
..++-.+|..|... .+.-.|+.++.++.+...... .. .+..|..+.-+. +....-.-.++.++ +--++
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence 44555566555433 346678888888877654310 00 111122111110 11111111222221 22356
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh
Q 016124 213 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 282 (394)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 282 (394)
+-+.+++.|+.||++.......|-+|...|+++..++++.-|+.+.++.+.|-+|.+...+...++++..
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 7778889999999988777778999999999999999999999999999999999999988888877653
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.31 E-value=6.9 Score=31.82 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhC
Q 016124 56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 135 (394)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 135 (394)
....++..++..+...|+++.++..+++.+.. +|..-..+..+-..|...|+...|+..|++.-.....-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 45677888999999999999999999988776 5666678888999999999999999999998876544444
Q ss_pred CC
Q 016124 136 EN 137 (394)
Q Consensus 136 ~~ 137 (394)
.+
T Consensus 223 i~ 224 (280)
T COG3629 223 ID 224 (280)
T ss_pred CC
Confidence 43
No 360
>PF12854 PPR_1: PPR repeat
Probab=91.03 E-value=0.33 Score=24.65 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhHHHH
Q 016124 355 MLTLKKVVSYLDKLGRKEEKFPLKKRL 381 (394)
Q Consensus 355 ~~~~~~la~~~~~~g~~~~A~~~~~~a 381 (394)
..++..|...|.+.|+.++|.++|++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 457888999999999999999999864
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.01 E-value=4.1 Score=28.66 Aligned_cols=68 Identities=19% Similarity=0.130 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 227 FVTHLLNLAASYSRSKNF---VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 227 ~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
...+.+++++++....+. .+.+.+++..+. .........+.+.|+..+.+.++|+.++.+....++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 456778889988876554 445555555443 02223455677889999999999999999999888754
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.57 E-value=0.68 Score=25.22 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 190 IDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
.++|..|...|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999874
No 363
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.45 E-value=3.1 Score=40.21 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=68.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHH
Q 016124 149 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 228 (394)
Q Consensus 149 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 228 (394)
-+++...+.|+.|+..|++....+ |....-..+.+..|.....+-.-..--+.+.+|+..++... +.+...
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 552 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESF-------PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAP 552 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcC-------CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCc
Confidence 345555666777777776655543 22222233445666666554332222256667776666654 234444
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP 272 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 272 (394)
.-|...|.+|...|++++-++.+.-++..+ +.||.+...
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 591 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRL 591 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence 556677889999999999999999998865 456766554
No 364
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.34 E-value=2.1 Score=35.54 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHH
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 80 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 80 (394)
...-+...|+-.+.++++++|...|..|..++...+|..+.....+++..|..++..+++....-.
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344567889999999999999999999999999999999999999999999999999888766543
No 365
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.32 E-value=3 Score=25.92 Aligned_cols=42 Identities=29% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHH
Q 016124 143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 184 (394)
Q Consensus 143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 184 (394)
..+...|.-+-..|++.+|+.+|+++++.+.+.....||.+.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 345556677788999999999999999988765444455544
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.03 E-value=6.7 Score=31.79 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Q 016124 187 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 266 (394)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 266 (394)
..+...+..|...|.+.+|+.+.++++.. +|..-..+..+-.++...|+--.+...|++.-+..+.-+|-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34455678899999999999999999875 5666667778888999999999999999988777766666543
Q ss_pred C
Q 016124 267 Q 267 (394)
Q Consensus 267 ~ 267 (394)
.
T Consensus 352 d 352 (361)
T COG3947 352 D 352 (361)
T ss_pred c
Confidence 3
No 367
>PF12854 PPR_1: PPR repeat
Probab=89.97 E-value=1.1 Score=22.77 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016124 142 GMAMCSLAHAKCANGNAEEAVELYKK 167 (394)
Q Consensus 142 ~~~~~~la~~~~~~g~~~~A~~~~~~ 167 (394)
..+++.+...|.+.|+.++|.+++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35788999999999999999999876
No 368
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.68 E-value=10 Score=31.18 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcC
Q 016124 226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 305 (394)
Q Consensus 226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 305 (394)
..+.+...||.+|.+.++|..|-..+.-.-. -......+.......+..+|.+|...++..+|..+..++--.....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~-~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPL-DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccCc-ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence 4566788999999999999999877643211 0000001112334566789999999999999999988874433222
Q ss_pred CCChhH-HHHHHHHHHHHHHhCCCchHHHHHH
Q 016124 306 KDSLPV-GEALDCLVSIQTRLGEDDTKLLELL 336 (394)
Q Consensus 306 ~~~~~~-~~~~~~l~~~~~~~g~~~~~A~~~~ 336 (394)
.++.. ...-..-|.+.-..+++-+.|..+|
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222334566666666662344443
No 369
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.66 E-value=1.3 Score=35.82 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=50.9
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
..+.-....|+.++|..+|+.|+.+ .|....++..+|.......+.-+|-.+|-+|+.+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3455566789999999999999987 5667788999999999999999999999999876
No 370
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.54 E-value=13 Score=32.11 Aligned_cols=133 Identities=16% Similarity=0.109 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcC---CCCcchHhhhHhHHHHHHHhCcH---HHHHHHHHHHHHHH
Q 016124 57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG---TESADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIY 130 (394)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~ 130 (394)
..-.++..|........|++|+.++-.|-+.+..... ..-...+..-..+.+||+.+.+. ++|..-+..+-.-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 3344566778888888899988887777655433211 00112233334566777776553 34554444444433
Q ss_pred HHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016124 131 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 210 (394)
Q Consensus 131 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 210 (394)
...+|.+.. .++.-.| ..+|....+...+..-|.+.+.+|+-++|.++++
T Consensus 242 ~~syGenl~----------Rl~~lKg--------------------~~spEraL~lRL~LLQGV~~yHqg~~deAye~le 291 (568)
T KOG2561|consen 242 ERSYGENLS----------RLRSLKG--------------------GQSPERALILRLELLQGVVAYHQGQRDEAYEALE 291 (568)
T ss_pred hhhhhhhhH----------hhhhccC--------------------CCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 333222111 1111111 1123333344445556777777777777777777
Q ss_pred HHHHHHHHh
Q 016124 211 ECLLITEKY 219 (394)
Q Consensus 211 ~a~~~~~~~ 219 (394)
.+.....+.
T Consensus 292 ~a~~~l~el 300 (568)
T KOG2561|consen 292 SAHAKLLEL 300 (568)
T ss_pred HHHHHHHHe
Confidence 776655443
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.39 E-value=7.7 Score=31.46 Aligned_cols=72 Identities=22% Similarity=0.092 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124 231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 310 (394)
Q Consensus 231 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 310 (394)
+...+..|...|.+.+|+++.++++.+ +|.....+..+-.++...|+--.|.+.|++.-+.....+|-+..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 444577889999999999999999873 566666778888999999999999999999888887777655443
No 372
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.36 E-value=15 Score=32.73 Aligned_cols=211 Identities=13% Similarity=0.109 Sum_probs=117.1
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHhcCCCC
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
...+..+-..|+...|-..-.++..+.++............++.++..-...- .++..-.++++.+.+. +
T Consensus 290 ~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~-------~ 362 (656)
T KOG1914|consen 290 IEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE-------D 362 (656)
T ss_pred HHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh-------c
Confidence 34455555556655444444444444333211111122222333332222111 2444455555555542 3
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
.+..-++..+-..-.+..-...|...|.++-+.-.. ..+.-+..+ + .-|...++..-|...|+-.+..+
T Consensus 363 ~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~---~hhVfVa~A---~-mEy~cskD~~~AfrIFeLGLkkf---- 431 (656)
T KOG1914|consen 363 IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT---RHHVFVAAA---L-MEYYCSKDKETAFRIFELGLKKF---- 431 (656)
T ss_pred cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC---cchhhHHHH---H-HHHHhcCChhHHHHHHHHHHHhc----
Confidence 333344555555556666677888888887654211 111111111 1 23567899999999999998864
Q ss_pred cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 177 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
++.+.... .....+...++-..+..+|++++.. .. .......+|..+-..-..-|+....+++-++-..
T Consensus 432 ---~d~p~yv~---~YldfL~~lNdd~N~R~LFEr~l~s---~l--~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 432 ---GDSPEYVL---KYLDFLSHLNDDNNARALFERVLTS---VL--SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ---CCChHHHH---HHHHHHHHhCcchhHHHHHHHHHhc---cC--ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444443 3455677889999999999998864 11 2223456777777777788888888877766665
Q ss_pred HHH
Q 016124 257 IMT 259 (394)
Q Consensus 257 ~~~ 259 (394)
.+.
T Consensus 501 af~ 503 (656)
T KOG1914|consen 501 AFP 503 (656)
T ss_pred hcc
Confidence 544
No 373
>PF13041 PPR_2: PPR repeat family
Probab=89.23 E-value=2.6 Score=23.60 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLD 256 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 256 (394)
.+++.+-..+.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678888999999999999999999876
No 374
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=12 Score=31.02 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=65.2
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 016124 195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 274 (394)
Q Consensus 195 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (394)
+....++.++|++++++..+....... ...+......+|.++...|+..++.+.+...-.......+- .+.+-..++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e--~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKE--PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHH
Confidence 444566899999999998877665432 23456677788999999999999999998887766555332 232444455
Q ss_pred HHHH-HHHhhcChHHHHHHH
Q 016124 275 HLGI-TLYHLNRDKEAEKLV 293 (394)
Q Consensus 275 ~la~-~~~~~g~~~~A~~~~ 293 (394)
.++. .|...|++.......
T Consensus 161 ~lssqYyk~~~d~a~yYr~~ 180 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRHA 180 (380)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 5554 455577776654433
No 375
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.83 E-value=6.9 Score=33.62 Aligned_cols=119 Identities=18% Similarity=0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHH
Q 016124 185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLAASYSRSKN---FVEAERLLRICLDIM 258 (394)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~ 258 (394)
+...+...|++......|++|+.++-.|-+.+..... ......+..-..+.++|+...+ .++|..-+..+-.-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 3445566778888888899998888777655433211 0011122223345667766654 345555555444444
Q ss_pred Hhhc-----------CCCCCcch---HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124 259 TKTV-----------GPDDQSIS---FPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303 (394)
Q Consensus 259 ~~~~-----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 303 (394)
...+ |+..|..+ +....-|.+.+.+|+-++|.++++.+.....+.
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 4333 34445433 334456889999999999999999998877654
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.81 E-value=16 Score=32.32 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=59.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 224 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 224 (394)
...++..+..+|.++.|+.+.+. +.. .+. +....|+.+.|.+..++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D--------------~~~----rFe---LAl~lg~L~~A~~~a~~------------- 343 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD--------------PDH----RFE---LALQLGNLDIALEIAKE------------- 343 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS---------------HHH----HHH---HHHHCT-HHHHHHHCCC-------------
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC--------------hHH----HhH---HHHhcCCHHHHHHHHHh-------------
Confidence 45667777888888877765432 111 122 34577888887765432
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124 225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 290 (394)
Q Consensus 225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (394)
......|..||...+.+|+++-|.++|+++-+ +..|..+|...|+.+.=.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHH
Confidence 22344788899999999999999888887543 245566677777754433
No 377
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=88.29 E-value=2.4 Score=26.67 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 316 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 316 ~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
...|..+...|+.+ +|+.+|++++....+.+....| .......++.|..+-+++........
T Consensus 12 I~kaL~~dE~g~~e-~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~~~~~v~ 73 (79)
T cd02679 12 ISKALRADEWGDKE-QALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKTNLNMVK 73 (79)
T ss_pred HHHHhhhhhcCCHH-HHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455568888 9999999999988776554433 12223445666666555554444433
No 378
>PF13041 PPR_2: PPR repeat family
Probab=88.20 E-value=2.9 Score=23.38 Aligned_cols=28 Identities=21% Similarity=-0.008 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 271 FPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
.++..+-..+.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677888899999999999999998875
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.68 E-value=18 Score=31.39 Aligned_cols=140 Identities=11% Similarity=-0.003 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHhhchhHHHHHHHHHHHHHHHhcCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL--GSIGRAKKAVEIYHRVITILELNRGT 94 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~~~~~ 94 (394)
......+...+..++|..|...+...... + ++.. . ...+..+...| ....++.+|.+.++..+......
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~~-~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l--- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---L-PGRE-E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL--- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cchh-h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---
Confidence 34566777888999999999999987763 1 2211 2 34455554444 56678889999888876542110
Q ss_pred CCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 95 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
......+..+. +.-++...+.....................+..-|.--...|+|+.|...+-+++++.-+
T Consensus 203 --~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 --NQEREGLKELV-------EVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred --HhHHHHHHHHH-------HHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 00011111111 111222222222221111000001222223333344445689999999999999887643
No 380
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=87.64 E-value=0.71 Score=22.41 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 357 TLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 357 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
++..+-..|.+.|++++|.++|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 466788899999999999999998764
No 381
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=23 Score=32.44 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 308 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 308 (394)
..+.+-|.-+.+..+|..+++.|..++.....- ..+...+....+++.||....+.+.|.+++++|-+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------- 424 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------- 424 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--------
Confidence 344556777778889999999998887743221 1223446677889999999999999999998886632
Q ss_pred hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124 309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 345 (394)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~ 345 (394)
|...-.-..+..+....|+.+ +|+............
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se-~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSE-EALTCLQKIKSSEDE 460 (872)
T ss_pred cccHHHHHHHHHHHHHhcchH-HHHHHHHHHHhhhcc
Confidence 222223334445555667677 888877776655443
No 382
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=87.26 E-value=4 Score=33.23 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 190 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
.+.|.-....|+.++|..+|+.|+.+ .|....++..+|......++.-+|-.+|-+++.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34555567889999999999999986 4666778889999998889999999999998874
No 383
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=86.64 E-value=1.5 Score=21.14 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
+++.+-..|...|++++|...+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998754
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.06 E-value=22 Score=30.83 Aligned_cols=139 Identities=15% Similarity=0.034 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH--HHHHhhcChHHHHHHHHHHHHHHHHHcCCCC
Q 016124 231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG--ITLYHLNRDKEAEKLVLEALYIREIAFGKDS 308 (394)
Q Consensus 231 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 308 (394)
....+.-....++|..|...+...... . ++. .. ...+..++ ..++..-++.+|.+.++..+......
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l----- 202 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR---L-PGR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL----- 202 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----
Confidence 345566677899999999999987762 1 111 11 33444454 44567889999999999877643210
Q ss_pred hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Q 016124 309 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 309 ~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
......+..+..+..... .+.............-.+.....+..-|.--...|+|+.|...+-+++++.-+.
T Consensus 203 ~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~ 274 (379)
T PF09670_consen 203 NQEREGLKELVEVLKALE--------SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH 274 (379)
T ss_pred HhHHHHHHHHHHHHHHHH--------hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 011111222222221111 111111111110000012233333333444456899999999999998887654
No 385
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.96 E-value=1.6 Score=33.81 Aligned_cols=55 Identities=24% Similarity=0.471 Sum_probs=48.6
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 67 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 67 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
.....|+.+.|.+.|.+++++ .|.....++.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345678899999999999987 4677888999999999999999999999999987
No 386
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=85.72 E-value=2.5 Score=33.07 Aligned_cols=108 Identities=16% Similarity=0.032 Sum_probs=64.4
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh----HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHH
Q 016124 278 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP----VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 353 (394)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~ 353 (394)
.-.+..|+++.|+++..-+++....+.+.-... ++.....-+......|+.- +. .+......+. ......++-
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~-e~-~~~~~~~~l~-~~~dmpd~v 167 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESV-EP-YFLRVFLDLT-TEWDMPDEV 167 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCC-Ch-HHHHHHHHHH-hcCCCChHH
Confidence 346789999999999999988654432211111 1233334455555666543 21 1233333332 222333445
Q ss_pred HHHHHHHHHHHHH---------HhcCchhhhhhHHHHHHHHHHH
Q 016124 354 VMLTLKKVVSYLD---------KLGRKEEKFPLKKRLSNLRMKY 388 (394)
Q Consensus 354 ~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~~~~~~ 388 (394)
.+..+..+|..+. ..++...|..++++|+.+.++.
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 5666777787773 4567889999999999987663
No 387
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.51 E-value=1.7 Score=33.65 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=48.7
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 016124 24 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 87 (394)
Q Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 87 (394)
......++.+.|.+.|.+++.+. |.....++.+|....+.|+++.|...|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34556789999999999999874 566778999999999999999999999999987
No 388
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.39 E-value=3.3 Score=34.47 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHH
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 290 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (394)
.-+...|+-.+.++++++|...|..|..+....+|..+..+..+++..|..++..++.+.+.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556788899999999999999999999999999999999999999999998887765543
No 389
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.19 E-value=19 Score=29.27 Aligned_cols=220 Identities=13% Similarity=0.042 Sum_probs=115.5
Q ss_pred CchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHHHH
Q 016124 11 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK-KAVEIYHRVITILE 89 (394)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~ 89 (394)
...+..+.++.=+..+.+.|++..|.+...-.++...+...+.+ ......++.+....+.-+ +-.++.++++...
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS- 80 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS- 80 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-
Confidence 34556677788888899999999999888888887766322222 222345566665554333 4556677777766
Q ss_pred HhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH--------HHHHhh-CCCchHHHHHHHHHHHHHHHCCCHHH
Q 016124 90 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK--------IYTKVY-GENDGRVGMAMCSLAHAKCANGNAEE 160 (394)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~ 160 (394)
+ .+......+..+..+|..+.+.|++.+|..+|-.+-+ +..... .....+...........|...++...
T Consensus 81 ~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~ 159 (260)
T PF04190_consen 81 K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRD 159 (260)
T ss_dssp H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHH
T ss_pred c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHH
Confidence 2 2333445567888999999999999999988843211 111000 01111222222333445778899999
Q ss_pred HHHHHHHHHHHHHhc--------ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Q 016124 161 AVELYKKALRVIKDS--------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 232 (394)
Q Consensus 161 A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (394)
|...+..-.+..... ....++.|.+.-++.-+- + ...+ +...|....+.+..... .+|.....+.
T Consensus 160 A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~-t-~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~ 232 (260)
T PF04190_consen 160 ANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLL-T-CERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLD 232 (260)
T ss_dssp HHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHH-H-HHHT-----HHHHHHHHHHTHH----HHHHTHHHHH
T ss_pred HHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHH-H-HhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHH
Confidence 998887766652211 011223344333222222 2 2223 23556555554444331 1345556667
Q ss_pred HHHHHHHHcc
Q 016124 233 NLAASYSRSK 242 (394)
Q Consensus 233 ~la~~~~~~g 242 (394)
.+|..|....
T Consensus 233 ~IG~~yFgi~ 242 (260)
T PF04190_consen 233 KIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHH---
T ss_pred HHHHHHCCCC
Confidence 7777777644
No 390
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=85.06 E-value=1.5 Score=21.78 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 357 TLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 357 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
++..+...|.+.|++++|.++|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356778889999999999999998764
No 391
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.64 E-value=64 Score=34.97 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=78.9
Q ss_pred CccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 016124 224 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 303 (394)
Q Consensus 224 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 303 (394)
....+.+|.+.|++....|+++.|...+-+|.+. ....+....|..++.+|+...|+..+++.+.....-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 4568899999999999999999999988887762 244567889999999999999999999998765332
Q ss_pred cCCC---Chh------HHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHHHh
Q 016124 304 FGKD---SLP------VGEALDCLVSIQTRLGEDDT-KLLELLKRVLRIQER 345 (394)
Q Consensus 304 ~~~~---~~~------~~~~~~~l~~~~~~~g~~~~-~A~~~~~~al~~~~~ 345 (394)
.... .|. ...+...++......|+.+. .-+.+|+.+.++..+
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 1111 011 12344455666667777542 335667777766543
No 392
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.43 E-value=1.8 Score=22.36 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHH--HHHHHH
Q 016124 356 LTLKKVVSYLDKLGRKEEKFPLKK--RLSNLR 385 (394)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~ 385 (394)
+.+..+|-.+..+|++++|+.+|. -+..+.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 346778999999999999999944 655443
No 393
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.09 E-value=40 Score=32.12 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016124 164 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 215 (394)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 215 (394)
.|.-|+.+.+. .+.+...+..++...|..++..|++++|...|-+++..
T Consensus 349 ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 349 LYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34445555554 35566777888889999999999999999999988765
No 394
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.07 E-value=16 Score=27.48 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHH
Q 016124 122 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-----ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 196 (394)
Q Consensus 122 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~ 196 (394)
-|+.|..+++.... ....+.+.+.+|..+. ..+++..|++.+..+-+. +.+. +-.++|.++
T Consensus 50 nF~~A~kv~K~nCd--en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~~~---aC~~~gLl~ 115 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCD--ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NIPQ---ACRYLGLLH 115 (248)
T ss_pred HHHHHHHHHHhccc--ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CCHH---HHhhhhhhh
Confidence 45555555555432 2223344555554433 345788899999887662 1111 224455554
Q ss_pred HHc-----CC--hHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH------------------------HcccHH
Q 016124 197 HIV-----GR--GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS------------------------RSKNFV 245 (394)
Q Consensus 197 ~~~-----g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~ 245 (394)
..- ++ ..+|++++.++-+. ....+.+.|...|+ -..+.+
T Consensus 116 ~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd 185 (248)
T KOG4014|consen 116 WNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD 185 (248)
T ss_pred ccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence 432 22 56788888776543 11223333333333 234556
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh----hcChHHHHHHHHHHHHHHHHHcC
Q 016124 246 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFG 305 (394)
Q Consensus 246 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~ 305 (394)
.|.++-.++-++ .+..+..++.+.|.. -.+.++|..+-.+|.++.++.-.
T Consensus 186 ka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k 239 (248)
T KOG4014|consen 186 KALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK 239 (248)
T ss_pred HHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 666666555542 344566677777654 23567888888888888776543
No 395
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=83.90 E-value=3.3 Score=20.49 Aligned_cols=27 Identities=37% Similarity=0.644 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
+++.+-..|.+.|++++|..+|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356777889999999999999998765
No 396
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=83.21 E-value=26 Score=29.30 Aligned_cols=95 Identities=16% Similarity=0.247 Sum_probs=66.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHH
Q 016124 151 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 230 (394)
Q Consensus 151 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (394)
+....++.++|++++++..+..... ..+..+..+...+|+++...|+..++.+.+...-.......+- .+.+...
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~ 158 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSS 158 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-Chhhhhh
Confidence 3456679999999999999887653 2334556677889999999999999999999887776655432 2324444
Q ss_pred HHHHHH-HHHHcccHHHHHHH
Q 016124 231 LLNLAA-SYSRSKNFVEAERL 250 (394)
Q Consensus 231 ~~~la~-~~~~~g~~~~A~~~ 250 (394)
++.++. .|...|++......
T Consensus 159 fY~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 555544 45566777655443
No 397
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.89 E-value=36 Score=30.80 Aligned_cols=178 Identities=17% Similarity=0.124 Sum_probs=102.4
Q ss_pred HhCcHHHHHHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc------------
Q 016124 112 KEGKAVDAESVFSRILKIYTKV----YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS------------ 175 (394)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------ 175 (394)
....|++|...|.-+.....-. .-..+|.....+..++.++..+|+.+-|..+.++++-.+...
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456778888887776654311 012356677889999999999999999999999988765542
Q ss_pred --ccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH-HHcccHHHHHHHHH
Q 016124 176 --NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLR 252 (394)
Q Consensus 176 --~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~ 252 (394)
.+..+.......+++..-..+...|-+..|.++++-.+.+- ...+|. +...+..+| .+..+|.=-++.++
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd----p~eDPl---~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD----PSEDPL---GILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC----CcCCch---hHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11122233333444455566778899999999988777651 111332 222222333 33444444444443
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC---hHHHHHHHHHHHHHH
Q 016124 253 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIR 300 (394)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~ 300 (394)
..-. .... ..-|....+ ..+|..|..... -..|...+.+|+.+.
T Consensus 403 ~~e~-~n~l--~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 403 EPEN-MNKL--SQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHHh-hccH--hhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 3311 1111 112333322 345666666555 456788888887764
No 398
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.02 E-value=40 Score=30.63 Aligned_cols=178 Identities=11% Similarity=-0.033 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Q 016124 185 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 264 (394)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 264 (394)
-...+......-...|+++...-.+++++--+. .....|...+......|+.+-|...+..+.++.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~------ 361 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIH------ 361 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc------
Confidence 344556666777788999999999998876442 233456677777777799999988888887753
Q ss_pred CCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 016124 265 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 344 (394)
Q Consensus 265 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~ 344 (394)
.+........-+.+-...|+++.|...++....-. |....+-..-.......|+.+ .+.. +.......
T Consensus 362 -~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~-~~~~-~~~l~s~~- 429 (577)
T KOG1258|consen 362 -VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLE-DANY-KNELYSSI- 429 (577)
T ss_pred -CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchh-hhhH-HHHHHHHh-
Confidence 34444555556777788999999999998876533 343333334444556667766 5553 22222211
Q ss_pred hhcCCCCHHH-HHHHHHHHHH-HHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 345 REFGSESEEV-MLTLKKVVSY-LDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 345 ~~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
..+..++.. ...+...++. +.-.++.+.|...+.++.++.+..+
T Consensus 430 -~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 430 -YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred -cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 112333322 2333444443 4456778888888888887766544
No 399
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=81.98 E-value=66 Score=33.12 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=98.2
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHC---C--------------------
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---G-------------------- 156 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-------------------- 156 (394)
++..-.+|..+...|++.+|+..|..|+...+.. .|..+.+.++-.++.+..-. |
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 4556678999999999999999999999998874 35555555554444322110 0
Q ss_pred ---------------------------------CHHHHHHHHHHHHHHHHhccc---CCCchHHHHHHHHHHHHHHHHcC
Q 016124 157 ---------------------------------NAEEAVELYKKALRVIKDSNY---MSLDDSIMENMRIDLAELLHIVG 200 (394)
Q Consensus 157 ---------------------------------~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g 200 (394)
-...-...+++++..+.+... ..........+....+.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 011112234444444433210 00112234455566777777776
Q ss_pred --------------------ChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 016124 201 --------------------RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 258 (394)
Q Consensus 201 --------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 258 (394)
.-.++..++.+++....... ...+....+..+|.+|...|-..++.-+++.++...
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 66778888888877643322 344567789999999999999988887777776654
No 400
>PRK09169 hypothetical protein; Validated
Probab=81.93 E-value=82 Score=34.21 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHccc
Q 016124 230 HLLNLAASYSRSKN 243 (394)
Q Consensus 230 ~~~~la~~~~~~g~ 243 (394)
.+.|..+.+.+.++
T Consensus 584 ~LAN~LnALSKWP~ 597 (2316)
T PRK09169 584 GLANLLNALSKWPD 597 (2316)
T ss_pred HHHHHHHHHhhCCC
Confidence 34444445555444
No 401
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=80.86 E-value=27 Score=27.95 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=98.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCC
Q 016124 146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEH 224 (394)
Q Consensus 146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~ 224 (394)
..+|.+....++|++...+..++++..... .+..+. .+.++.+|- ..|....+...+.. ++......+ .
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~-eLt~EE------RnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~--~ 74 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSE-ELTVEE------RNLLSVAYKNVIGARRASWRIISS-IEQKEESRG--N 74 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCc-cCCHHH------HHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccC--c
Confidence 457788888999999999999987752100 011111 123334442 24555666666554 222111111 1
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHHHh-----hcC-----hHHHHH
Q 016124 225 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS---ISFPMLHLGITLYH-----LNR-----DKEAEK 291 (394)
Q Consensus 225 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~la~~~~~-----~g~-----~~~A~~ 291 (394)
+.. ..+..-|.. .=-++-.......+.+....+-+.... ....+...|..|.- .|+ .+.|..
T Consensus 75 ~~~----~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 75 EDH----VASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred hHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111 111111111 112334455666666666554433211 11222222333321 222 458899
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHH
Q 016124 292 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTR-LGEDDTKLLELLKRVLRIQ 343 (394)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~A~~~~~~al~~~ 343 (394)
.|++|.++....+.|.||-......+.+..+.. .++++ +|....+++++-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~-~A~~lAk~afd~A 201 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPD-RACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHH
Confidence 999999998887888888877766677666555 47777 8888777777544
No 402
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=80.32 E-value=12 Score=23.52 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 182 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 182 (394)
+...|.-.-..|++++|+.+|.++++.+.......+++
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 33445556778999999999999999876543233433
No 403
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=80.27 E-value=19 Score=32.05 Aligned_cols=93 Identities=17% Similarity=0.024 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHh---CcHHHHHHHHHHHHHHHHHhhCCCc
Q 016124 62 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---GKAVDAESVFSRILKIYTKVYGEND 138 (394)
Q Consensus 62 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~ 138 (394)
..-|.-.+..+....++..|.+++.. .|.....+.+.+.++++. |+.-.|+.-...|+.+ +
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n 441 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------N 441 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------C
Confidence 33344444455667788888877765 455566777777777665 3444455555555543 5
Q ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 139 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 139 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
|....+++.|+.++...+++.+|+.....+..
T Consensus 442 ~s~~kah~~la~aL~el~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 442 PSIQKAHFRLARALNELTRYLEALSCHWALQM 473 (758)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 77778899999999999999999988766544
No 404
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.24 E-value=6.4 Score=20.32 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhchHHHHHHHH
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQ 40 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~ 40 (394)
.+..+|..+..+|++++|+..|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46778999999999999999954
No 405
>PRK09169 hypothetical protein; Validated
Probab=79.89 E-value=97 Score=33.74 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHcccHHH
Q 016124 230 HLLNLAASYSRSKNFVE 246 (394)
Q Consensus 230 ~~~~la~~~~~~g~~~~ 246 (394)
-+.|..+.+.+-.+.+.
T Consensus 626 ~lAN~LnALSKWP~~~~ 642 (2316)
T PRK09169 626 DLANLLNGLSKWPDEDD 642 (2316)
T ss_pred HHHHHHHHHhcCCCchh
Confidence 33444444444444443
No 406
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=78.90 E-value=6.2 Score=19.43 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
++..+...+.+.|+++.|..+++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788899999999999999988765
No 407
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=78.29 E-value=18 Score=32.29 Aligned_cols=99 Identities=13% Similarity=-0.005 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHH
Q 016124 14 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILEL 90 (394)
Q Consensus 14 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~ 90 (394)
...+.+..-|.-.+..+....|+..|.+++... |.....+.+.+.++.+.+ +.-.|+.-...|+.+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--- 440 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYV--------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--- 440 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---
Confidence 334444555555555667778888888877643 445556667777776654 444455444455443
Q ss_pred hcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHH
Q 016124 91 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 128 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 128 (394)
+|....+++.|+.++...+++.+|+.+...+..
T Consensus 441 -----n~s~~kah~~la~aL~el~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 441 -----NPSIQKAHFRLARALNELTRYLEALSCHWALQM 473 (758)
T ss_pred -----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 677788999999999999999999988765543
No 408
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.23 E-value=38 Score=28.12 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 140 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 140 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
..+.....+|.+|...++|..|-..+.-.-. ..+....+.......+..+|+.|...++..+|..+..++--.....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~---~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPL---DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccCc---ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 4666788999999999999998776643211 1101112334455667889999999999999999988874332221
Q ss_pred hCCCCcc-HHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 016124 220 KGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRIC 254 (394)
Q Consensus 220 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 254 (394)
.++. ....-..-|++.-..++|-+|...|-+.
T Consensus 178 ---~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 178 ---SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 2222233466666777777776666544
No 409
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.77 E-value=80 Score=31.61 Aligned_cols=189 Identities=13% Similarity=0.099 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc------------------ccCCCchHHH-HHHHHHHHHHHHHcCChHH
Q 016124 144 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS------------------NYMSLDDSIM-ENMRIDLAELLHIVGRGQE 204 (394)
Q Consensus 144 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------------~~~~~~~~~~-~~~~~~la~~~~~~g~~~~ 204 (394)
..+.+|.+|...|+..+|+.+|.+|..-..+. .+..+..+.. ..-|...-+++..-+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 45667888999999999999999987532110 0001111111 2233334444555555555
Q ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhc
Q 016124 205 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 284 (394)
Q Consensus 205 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 284 (394)
+..+..+|++. .++++|..+....++=..+...|.+.+|...+-+- ++......++..+-.+++..|
T Consensus 1002 vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHhcc
Confidence 55555555543 35567777777777777888888888886654321 333344567778888888888
Q ss_pred ChHHHHH-----HHHHHHH-HHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124 285 RDKEAEK-----LVLEALY-IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 345 (394)
Q Consensus 285 ~~~~A~~-----~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~ 345 (394)
+++.=.. +-++... +...............+..|-..+...+++...|-.+|+.+..+..+
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 7653221 1112222 11111111111122234455566777888885667778888776443
No 410
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=77.19 E-value=94 Score=32.08 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCC-------------------
Q 016124 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------------------- 201 (394)
Q Consensus 141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 201 (394)
..+....+|..+...|++.+|+..|.+|+...+.. .|....+.++-.++.+....+.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~----~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS----NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc----CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 45567788999999999999999999999998864 5666666666555544322110
Q ss_pred -------------------------------------hHHHHHHHHHHHHHHHHhh---CCCCcc--HHHHHHHHHHHHH
Q 016124 202 -------------------------------------GQEGRELLEECLLITEKYK---GKEHPS--FVTHLLNLAASYS 239 (394)
Q Consensus 202 -------------------------------------~~~A~~~~~~a~~~~~~~~---~~~~~~--~~~~~~~la~~~~ 239 (394)
...-.+.+++++..+.+.. .+..|. ...+....+.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 1111234455555554443 111233 3445566677777
Q ss_pred Hcc--------------------cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 240 RSK--------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 240 ~~g--------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
... .-.++...+.+++.+.... -...+....+..+|.+|...|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 666 6777888888887754322 123456778899999999999999888888887766
Q ss_pred HH
Q 016124 300 RE 301 (394)
Q Consensus 300 ~~ 301 (394)
..
T Consensus 475 ~~ 476 (1185)
T PF08626_consen 475 LV 476 (1185)
T ss_pred hc
Confidence 54
No 411
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.79 E-value=52 Score=28.95 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHH--HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCC
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV--TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 95 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 95 (394)
.+..-|.++..++++.+|...|.+..+-... .|... +++.+.....+-. +.++..+..+...++..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~-----~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~~--- 75 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKES-----SPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQF--- 75 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhc-----chHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHhc---
Confidence 4556788999999999999999998775432 22222 2232222222222 33444444444444433
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH----------HHHHHHHHHHHHHHCCCHHHHHHHH
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR----------VGMAMCSLAHAKCANGNAEEAVELY 165 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~ 165 (394)
+.......-.|...++.+++.+|++.+...-...... ..+. ....-...+.++...|++.++...+
T Consensus 76 -~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL 151 (549)
T PF07079_consen 76 -GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL 151 (549)
T ss_pred -CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 2334445556888899999999998876654432221 1111 1111244578899999999999999
Q ss_pred HHHHHHH
Q 016124 166 KKALRVI 172 (394)
Q Consensus 166 ~~a~~~~ 172 (394)
++.+...
T Consensus 152 n~i~~~l 158 (549)
T PF07079_consen 152 NRIIERL 158 (549)
T ss_pred HHHHHHH
Confidence 9988765
No 412
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=76.42 E-value=60 Score=29.46 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=50.2
Q ss_pred hHhhhHhHHHHHHH--hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016124 99 LVLPLFSLGSLFIK--EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 176 (394)
Q Consensus 99 ~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 176 (394)
.+.++.+||.+-.- ...-..++.+|.+|+...+..++..+. .-|..+|..+++.+++.+|+..+-++-+..+.-+
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445555554332 122356789999999999888754332 3467789999999999999999999988877654
Q ss_pred c
Q 016124 177 Y 177 (394)
Q Consensus 177 ~ 177 (394)
+
T Consensus 353 Y 353 (618)
T PF05053_consen 353 Y 353 (618)
T ss_dssp -
T ss_pred c
Confidence 4
No 413
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.92 E-value=17 Score=22.80 Aligned_cols=30 Identities=20% Similarity=-0.010 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 016124 190 IDLAELLHIVGRGQEGRELLEECLLITEKY 219 (394)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 219 (394)
...|.-.-..|++++|+.+|.++++.+...
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 445666778899999999999999987663
No 414
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.84 E-value=42 Score=27.36 Aligned_cols=142 Identities=16% Similarity=0.052 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchH-----HHHHHHHHHH-HHHHHhhchhHHHHHHHHHHHHH
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-----LLVTSLLGMA-KVLGSIGRAKKAVEIYHRVITIL 88 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~ 88 (394)
....+-.-+....-..||..|+..++++++........+.+ ..--.+..+| .++..++++.+.+...-+-.+.-
T Consensus 34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p 113 (309)
T PF07163_consen 34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 34455667788888999999999999999877332111111 2222233333 56678899998887765544332
Q ss_pred HHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016124 89 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYK 166 (394)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 166 (394)
++ .-++++-.-..+|.+.+++....+.-..-+..- .+...|. ...+-..+-.++.=.|.+++|+++..
T Consensus 114 Ek-------lPpkIleLCILLysKv~Ep~amlev~~~WL~~p---~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 114 EK-------LPPKILELCILLYSKVQEPAAMLEVASAWLQDP---SNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred cc-------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc---ccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 11 113344444567888999888777666555421 1111222 11222344555666899999998873
No 415
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.31 E-value=19 Score=32.63 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=37.0
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 195 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 195 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
+..+.|+++.|.++..++-. ..-+..||.+....|++..|.+++.++.+.
T Consensus 646 lal~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34577888888777655421 234668999999999999999999888653
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=74.93 E-value=49 Score=27.68 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=63.4
Q ss_pred HHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-------ccCC---
Q 016124 110 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------NYMS--- 179 (394)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~--- 179 (394)
-.+..+..+-++....++++ ++.-+.++..++.- ...-..+|.++++++++..+.. ...+
T Consensus 194 AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 33444444445555555554 34445555555432 2233556777777776654321 0000
Q ss_pred -----CchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHH
Q 016124 180 -----LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 245 (394)
Q Consensus 180 -----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 245 (394)
.|......+...++.+..++|+..+|.+.++...+-.. -.....+..+|...+....-|.
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p------l~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP------LLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 12223344456789999999999999999887654210 1123334445555555444333
No 417
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=74.90 E-value=25 Score=31.77 Aligned_cols=117 Identities=17% Similarity=0.080 Sum_probs=69.2
Q ss_pred CCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCchHHHHHHHH-HHH
Q 016124 263 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR-VLR 341 (394)
Q Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~-al~ 341 (394)
++.++....... ++..+...++...+.-....++.. .|....+..+|+......|... .+...+.. +..
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~-~~~~~~~~~a~~ 130 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQF-LALADISEIAEW 130 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHH-HHHHHHHHHHHh
Confidence 344555544444 666677777776776666665542 2455566778887777776655 44433333 332
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHh
Q 016124 342 IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 391 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 391 (394)
..... ..--......+. ++......|+..++.....++..+.+++.+.
T Consensus 131 ~~~~~-~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 131 LSPDN-AEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred cCcch-HHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 21000 000001122233 6888889999999999999999988887554
No 418
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=74.02 E-value=36 Score=25.71 Aligned_cols=160 Identities=12% Similarity=0.112 Sum_probs=90.5
Q ss_pred hhchhHHH-HHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHH-----hCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124 71 IGRAKKAV-EIYHRVITILELNRGTESADLVLPLFSLGSLFIK-----EGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144 (394)
Q Consensus 71 ~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 144 (394)
+|+|-+++ +.|+.|..+++... +....+.+.+.+|..+.. .+++..|+..+..+-+. +.| .+
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nC--den~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-------n~~---~a 107 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNC--DENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-------NIP---QA 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--cccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-------CCH---HH
Confidence 34444443 34666666665544 333445566666654432 45678888888877642 223 34
Q ss_pred HHHHHHHHHHC-----C--CHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH-----------------------
Q 016124 145 MCSLAHAKCAN-----G--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE----------------------- 194 (394)
Q Consensus 145 ~~~la~~~~~~-----g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~----------------------- 194 (394)
..++|.+...- + +.++|++++.++-++-.. .+-++|+.
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~------------~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~ 175 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG------------EACFLLSTMYMGGKEKFKTNAPGEGKPLDRA 175 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc------------hHHHHHHHHHhccchhhcccCCCCCCCcchh
Confidence 55666655432 2 367888888887664210 01122222
Q ss_pred -HHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHhhcCC
Q 016124 195 -LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----KNFVEAERLLRICLDIMTKTVGP 264 (394)
Q Consensus 195 -~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~ 264 (394)
.+....+.++|..+.-+|-++ ....+..|+.+.|..- .+-++|..+-.++.++.++....
T Consensus 176 ~~~~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~ 240 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKN 240 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 223334556666665555443 2344566777776542 46789999999999987776443
No 419
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.73 E-value=48 Score=27.08 Aligned_cols=62 Identities=13% Similarity=-0.039 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh
Q 016124 205 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 282 (394)
Q Consensus 205 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 282 (394)
|..+|.+|..+ .|..+..++.||.++...|+.-.|+-+|-+++- ...|. ..+..+|..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~-------~~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA-------VRIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS-------SSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHh-------cCCCc-HHHHHHHHHHHHH
Confidence 67889999887 477788999999999999999999999988875 23343 5566777777766
No 420
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=73.51 E-value=18 Score=22.01 Aligned_cols=30 Identities=37% Similarity=0.472 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
+...|.-+-..|++++|+.+|.++++.+..
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344556667789999999999999987654
No 421
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.48 E-value=20 Score=22.49 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLES 48 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 48 (394)
+..+...|.-.-..|+|++|+.+|..+++.+..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445667777888899999999999999998765
No 422
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=72.85 E-value=13 Score=28.15 Aligned_cols=48 Identities=21% Similarity=0.008 Sum_probs=39.6
Q ss_pred CCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhH
Q 016124 264 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 311 (394)
Q Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 311 (394)
...|....++.++..-|...|++..|+...+.+++-.....|.+||++
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 345677888999999999999999999999999999988888888863
No 423
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=72.02 E-value=57 Score=27.19 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 016124 12 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 89 (394)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 89 (394)
.|+...+++..+...+..|+|..|-.++-....+. .+.++....++...-..-.-..+|+.|.+-+.+..+...
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~----~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALV----SDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 56778889999999999999999988876555443 334444455544433344556789999998888777653
No 424
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.01 E-value=31 Score=24.21 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=56.3
Q ss_pred hchHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHH
Q 016124 30 ENYEKSMLVYQRVINVLESR-YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 108 (394)
Q Consensus 30 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 108 (394)
+.-..-...+++++..+... .-.+++.....+...+... +.+...|...... . -....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~---~---IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSK---G---IGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHH---T---TSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHc---C---ccHHHHHHHHHHHH
Confidence 45555667888888876442 2234556666666555432 2677777765442 1 12355677888899
Q ss_pred HHHHhCcHHHHHHHHHHHH
Q 016124 109 LFIKEGKAVDAESVFSRIL 127 (394)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al 127 (394)
.+...|++++|...|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998864
No 425
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=71.85 E-value=58 Score=27.17 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=52.2
Q ss_pred CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016124 96 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRVIKD 174 (394)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 174 (394)
.|+...+++..+...+..|+|..|-.++-....+. .+.++... ..|..+|. -.-..+|+-|++-+.+.-+....
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~----~~~d~n~lsalwGKlAS-EIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALV----SDPDRNYLSALWGKLAS-EILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc----CCcchhhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHcc
Confidence 46778899999999999999999998876554443 23344333 33444443 33456899999999888777654
Q ss_pred c
Q 016124 175 S 175 (394)
Q Consensus 175 ~ 175 (394)
.
T Consensus 200 ~ 200 (432)
T KOG2758|consen 200 K 200 (432)
T ss_pred c
Confidence 3
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.26 E-value=33 Score=24.12 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 016124 200 GRGQEGRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 278 (394)
Q Consensus 200 g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 278 (394)
+.-..-..++++++..+.... -.+++.....+...+.. - +.+.+.|..... +.. ....+..+...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----~--~~~~~if~~l~~---~~I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----S--SDPREIFKFLYS---KGI---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----B--SHHHHHHHHHHH---HTT---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----c--cCHHHHHHHHHH---cCc---cHHHHHHHHHHHH
Confidence 455555677777777664321 11344444444444432 2 277777776544 222 2356677888899
Q ss_pred HHHhhcChHHHHHHHHHHH
Q 016124 279 TLYHLNRDKEAEKLVLEAL 297 (394)
Q Consensus 279 ~~~~~g~~~~A~~~~~~a~ 297 (394)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 427
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.93 E-value=21 Score=21.70 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 49 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 49 (394)
+..+...|.-.-..|++++|+.+|.++++.+...
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999999999887554
No 428
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=70.64 E-value=23 Score=22.08 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=22.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 148 LAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 148 la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.|.-+-..|++++|+.+|.++++.+...
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445566899999999999999987664
No 429
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=69.96 E-value=25 Score=22.23 Aligned_cols=32 Identities=16% Similarity=-0.046 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 016124 190 IDLAELLHIVGRGQEGRELLEECLLITEKYKG 221 (394)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 221 (394)
.+.|..+-..|+.++|+.+|++++....+...
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 44555566678999999999999988877654
No 430
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.70 E-value=31 Score=30.45 Aligned_cols=94 Identities=18% Similarity=0.035 Sum_probs=52.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCc
Q 016124 146 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 225 (394)
Q Consensus 146 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 225 (394)
...+.+....|+|+.+...+..+-.+... .+.. ...+-+.....|++++|.....-.+.- ++ ..|
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s-----~~~~-----~~~~~r~~~~l~r~~~a~s~a~~~l~~--ei---e~~ 391 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIGT-----TDST-----LRCRLRSLHGLARWREALSTAEMMLSN--EI---EDE 391 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhcC-----CchH-----HHHHHHhhhchhhHHHHHHHHHHHhcc--cc---CCh
Confidence 34577888999999998888776655422 1221 123445566778888887765544321 00 122
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 226 SFVTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 226 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
.. ...-+..-...|-++++..++++.+.+
T Consensus 392 ei---~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 392 EV---LTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hh---eeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 22 111222233455667777776666554
No 431
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.62 E-value=17 Score=31.96 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=32.8
Q ss_pred HHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 239 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 239 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
...|+...|-+-...++.. .|.........+.+....|+|+.|...+..+-.+
T Consensus 300 ~~~gd~~aas~~~~~~lr~--------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~ 352 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN--------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI 352 (831)
T ss_pred hhccCHHHHHHHHHHHHHh--------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh
Confidence 3456776666666555552 2223333345678888999999988877655443
No 432
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=69.54 E-value=18 Score=27.39 Aligned_cols=48 Identities=23% Similarity=0.181 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhcCCCCHHH
Q 016124 306 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEV 354 (394)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~ 354 (394)
...|....++.++..-|...|+++ .|+...+++++-..+..|.++|++
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~e-vav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYE-VAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhhhcccCC
Confidence 455777888999999999999999 999999999999988888888864
No 433
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.16 E-value=62 Score=26.44 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Q 016124 77 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 154 (394)
Q Consensus 77 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 154 (394)
|..+|.+|..+ .|..+..++.+|.++...|+.-+|+-+|-+++-. ..|. ..+..++...+..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67889999988 5777899999999999999999999999998843 2333 4566777777666
No 434
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.60 E-value=70 Score=26.82 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=68.3
Q ss_pred HHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC------------
Q 016124 69 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE------------ 136 (394)
Q Consensus 69 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------ 136 (394)
.+..+..+-++....++++ ++..+.++..|+.- ..--..+|+..++++++..+..+..
T Consensus 195 WRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 3344455555556666665 45666666666542 2334667888888888765543211
Q ss_pred -----CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCCh
Q 016124 137 -----NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG 202 (394)
Q Consensus 137 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 202 (394)
|..-...+-..++.+-.++|+..+|.+.++...+-. .-..+..++.|+-..+....-|
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~--------pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF--------PLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--------cHHHHHHHHHHHHHHHHHHHHH
Confidence 111223345678999999999999999998765421 1223344555555555544433
No 435
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=68.59 E-value=26 Score=21.88 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHh
Q 016124 15 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 50 (394)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 50 (394)
.+..+...|.-+-..|++.+|+.+|+++++.+.+..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 345567778888899999999999999999876653
No 436
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.46 E-value=68 Score=26.25 Aligned_cols=136 Identities=17% Similarity=0.116 Sum_probs=79.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCc---hHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHHhh
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD---DSIMENMRIDLA-ELLHIVGRGQEGRELLEECLLITEKYK 220 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~~~~~~ 220 (394)
+-.-+....-..||..|++..+++++..........+ ...+-..+..+| .++.+++++.+++.+.-+-.+.-++
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk-- 115 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK-- 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc--
Confidence 3444566667788999999999999887332111111 112222222232 4577889999988876554433221
Q ss_pred CCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH-----hhcChHHHHHHHH
Q 016124 221 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-----HLNRDKEAEKLVL 294 (394)
Q Consensus 221 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~ 294 (394)
-| +.++..-..+|.+.+++....+.-..-+.. +++.... -+..++++|. =.|.+++|.++..
T Consensus 116 ---lP--pkIleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp-~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 116 ---LP--PKILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLP-EYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ---CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCch-hhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 11 233444456788999998877766655541 2222222 2445555554 4799999988763
No 437
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.36 E-value=1.2e+02 Score=28.62 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=12.5
Q ss_pred HHHHCCCHHHHHHHHHHH
Q 016124 151 AKCANGNAEEAVELYKKA 168 (394)
Q Consensus 151 ~~~~~g~~~~A~~~~~~a 168 (394)
.+...|++++|++.+++.
T Consensus 514 ~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHTT-HHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHhC
Confidence 356788999988777663
No 438
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.49 E-value=1.2e+02 Score=27.88 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=89.5
Q ss_pred CCchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCc----------------hHHHHHHHHHHHHHHHHhhc
Q 016124 10 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT----------------SILLVTSLLGMAKVLGSIGR 73 (394)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~ 73 (394)
..+|.....+..++.++..+|+.+-|....++++-.+.+.+.+. .....-+++.....+...|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 35688888999999999999999999999999987766543221 11233344455566677899
Q ss_pred hhHHHHHHHHHHHHHHHhcCCC-CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 016124 74 AKKAVEIYHRVITILELNRGTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 152 (394)
Q Consensus 74 ~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 152 (394)
+..|.++.+-.+.+ .+. +|. .+.+.+-....+..+|+=-+..++..-.. .+.. ..|.... -..+|..|
T Consensus 358 ~rTA~E~cKlllsL-----dp~eDPl--~~l~~ID~~ALrareYqwiI~~~~~~e~~-n~l~--~~PN~~y-S~AlA~f~ 426 (665)
T KOG2422|consen 358 WRTALEWCKLLLSL-----DPSEDPL--GILYLIDIYALRAREYQWIIELSNEPENM-NKLS--QLPNFGY-SLALARFF 426 (665)
T ss_pred hHHHHHHHHHHhhc-----CCcCCch--hHHHHHHHHHHHHHhHHHHHHHHHHHHhh-ccHh--hcCCchH-HHHHHHHH
Confidence 99999988877776 222 232 22222223333444554444444433211 1110 1122211 12355566
Q ss_pred HHCCC---HHHHHHHHHHHHHHH
Q 016124 153 CANGN---AEEAVELYKKALRVI 172 (394)
Q Consensus 153 ~~~g~---~~~A~~~~~~a~~~~ 172 (394)
..... -..|...+.+|+...
T Consensus 427 l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HhcCChhhHHHHHHHHHHHHHhC
Confidence 65555 466777888887754
No 439
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=62.81 E-value=79 Score=25.41 Aligned_cols=183 Identities=11% Similarity=0.025 Sum_probs=100.0
Q ss_pred HhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhcccCCCch
Q 016124 104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-ANGNAEEAVELYKKALRVIKDSNYMSLDD 182 (394)
Q Consensus 104 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 182 (394)
..++.+....++|++...+..++...... ......-.+.++.+|- ..|....+...+.. ++.-... .+ ..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~-----~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~--~~-~~ 75 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDS-----EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEES--RG-NE 75 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhc--cC-ch
Confidence 34677888899999999999988764210 0011112233333332 24555666666554 2221110 01 11
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--cc-HHHHHHHHHHHHHHc-----c-----cHHHHHH
Q 016124 183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PS-FVTHLLNLAASYSRS-----K-----NFVEAER 249 (394)
Q Consensus 183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~-~~~~~~~la~~~~~~-----g-----~~~~A~~ 249 (394)
.....+......+ -++=...+...+.+.....-+.. +. .+..+-..|..|.-. | -.+.|.+
T Consensus 76 ~~~~~~~~yr~ki------e~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DHVASIKEYRGKI------ETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1110010111111 12334456666666655543321 11 122222334443322 2 2458899
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHh-hcChHHHHHHHHHHHHHHH
Q 016124 250 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIRE 301 (394)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~ 301 (394)
.|+.|.++....+.+.||.......+.+..|.. .++.++|....+++++-..
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999998877888888877777777776665 6999999988888876553
No 440
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.63 E-value=36 Score=21.39 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 49 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 49 (394)
+.-+...|.-.-..|++++|+.+|.++++.+...
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4445667788889999999999999999987664
No 441
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=62.44 E-value=61 Score=23.96 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 016124 156 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 235 (394)
Q Consensus 156 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 235 (394)
++-+-|...++..+... +....--+...+..+-...|.+.+|..++.+.++.- ...+...+|..++
T Consensus 71 ~N~eLa~~tLEnLvt~s--------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~ 136 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS--------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARIN 136 (220)
T ss_pred CcHHHHHHHHHHHHHcc--------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHH
Confidence 44555666666644321 111112223444455667889999999999988753 3345667788888
Q ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 236 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
.+.....+-.--++--.+..+...-...+..|..+.+-...+..-...|+..+|++.++..+.
T Consensus 137 wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 137 WCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 877765433222222222222222223345565555555556666678889999999887765
No 442
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=62.37 E-value=35 Score=25.06 Aligned_cols=109 Identities=16% Similarity=0.032 Sum_probs=63.1
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC----C---------------------------CcchHhhhHhHHHHHH
Q 016124 63 GMAKVLGSIGRAKKAVEIYHRVITILELNRGT----E---------------------------SADLVLPLFSLGSLFI 111 (394)
Q Consensus 63 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~---------------------------~~~~~~~~~~l~~~~~ 111 (394)
..+......|+.++|...+.++.......... . ...........+.-..
T Consensus 7 ~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l 86 (155)
T PF10938_consen 7 QKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELL 86 (155)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHH
Confidence 45667778899999999999887765422100 0 0111233445667777
Q ss_pred HhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 112 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
..|+...|...++.+-.-..-....-.-.........+..+...|++.+|...+..+++.
T Consensus 87 ~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 87 KKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 888888888777654211000000001122334456788889999999999999998763
No 443
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=61.97 E-value=1.2e+02 Score=26.99 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=51.3
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 016124 238 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC 317 (394)
Q Consensus 238 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (394)
|...|++..|...|+-.+.. +++........-..+...++-..|..+|+.++...... ..-..+..
T Consensus 442 ~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~------q~k~iy~k 507 (660)
T COG5107 442 YYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT------QLKRIYDK 507 (660)
T ss_pred HHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh------hhhHHHHH
Confidence 45678888888888877663 23322222333445667888888888888887665432 22334555
Q ss_pred HHHHHHHhCCCchHHHHHHHH
Q 016124 318 LVSIQTRLGEDDTKLLELLKR 338 (394)
Q Consensus 318 l~~~~~~~g~~~~~A~~~~~~ 338 (394)
+...-..-|+.. .+..+-++
T Consensus 508 mi~YEs~~G~lN-~v~sLe~r 527 (660)
T COG5107 508 MIEYESMVGSLN-NVYSLEER 527 (660)
T ss_pred HHHHHHhhcchH-HHHhHHHH
Confidence 555555566655 44443333
No 444
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=61.81 E-value=1.3e+02 Score=27.52 Aligned_cols=72 Identities=19% Similarity=0.126 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 016124 227 FVTHLLNLAASYSRS--KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 301 (394)
Q Consensus 227 ~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 301 (394)
...++.+||.+-.-. ..-..++.+|.+++...+..++..| ..-|..+|..+.+.+++.+|+..+-++-....
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666654322 2345678999999998888876544 34567889999999999999999988866553
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.78 E-value=80 Score=25.08 Aligned_cols=104 Identities=14% Similarity=0.042 Sum_probs=59.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcc--cCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCcc--
Q 016124 151 AKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-- 226 (394)
Q Consensus 151 ~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-- 226 (394)
-.+..|+++.|++...-+++.-.... +...-+..++.-....+......|+.-+. .++.....+. ... +-|+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~--dmpd~v 167 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEW--DMPDEV 167 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcC--CCChHH
Confidence 34678999999999999998643320 00011233444444555556666663322 1233333332 212 3333
Q ss_pred HHHHHHHHHHHHH---------HcccHHHHHHHHHHHHHHH
Q 016124 227 FVTHLLNLAASYS---------RSKNFVEAERLLRICLDIM 258 (394)
Q Consensus 227 ~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~~~ 258 (394)
.+..+-..|..+. ..++...|..++++|+.+-
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
Confidence 3445556677663 4567889999999999863
No 446
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.23 E-value=39 Score=21.02 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=22.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 148 LAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 148 la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.|.-.-..|++++|+.+|.++++.+...
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3444567899999999999999987653
No 447
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=59.34 E-value=79 Score=24.22 Aligned_cols=59 Identities=22% Similarity=0.162 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 016124 190 IDLAELLHIVGRGQEGRELLEECLLITEKYKG--KEHPSFVTHLLNLAASYSRSKNFVEAERLLR 252 (394)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 252 (394)
...+......|++++|...++++.+...+... ..+|.. ..-|.+-..+..|.+|..++.
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel----~~ag~~~~a~QEyvEA~~l~~ 93 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPEL----YFAGFVTTALQEYVEATLLYS 93 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHhhcchHHHHHHHHHHHH
Confidence 44556667889999999999988776654421 112221 222333344455666665554
No 448
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.60 E-value=2.1e+02 Score=28.99 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHH---------h---------cCCC-Ccch--HhhhHhHHHHHHHhCcHHH
Q 016124 60 SLLGMAKVLGSIGRAKKAVEIYHRVITILEL---------N---------RGTE-SADL--VLPLFSLGSLFIKEGKAVD 118 (394)
Q Consensus 60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~---------~~~~-~~~~--~~~~~~l~~~~~~~g~~~~ 118 (394)
..+.+|.+|...|+..+|+..|.+|..-..+ . .|.. .+.. ...|...-.++...+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 3456788888999999999999998753211 0 0000 0111 1222233344455555555
Q ss_pred HHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHH
Q 016124 119 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 198 (394)
Q Consensus 119 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 198 (394)
+.+...+|++. .+++.|..+.....+=.-....|.+-+|...+-+ .++......++..+..++..
T Consensus 1002 vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-----------npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-----------NPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHh
Confidence 66655555554 3556777777777777777888888887665433 35555666677888888888
Q ss_pred cCChHH
Q 016124 199 VGRGQE 204 (394)
Q Consensus 199 ~g~~~~ 204 (394)
.|+++.
T Consensus 1067 cg~l~~ 1072 (1480)
T KOG4521|consen 1067 CGELEA 1072 (1480)
T ss_pred ccchHH
Confidence 887653
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.94 E-value=2e+02 Score=28.38 Aligned_cols=192 Identities=15% Similarity=0.010 Sum_probs=0.0
Q ss_pred hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhc---cc
Q 016124 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA--EEAVELYKKALRVIKDS---NY 177 (394)
Q Consensus 103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~---~~ 177 (394)
+..|+.+|...|++++|++.+.+..+-.. ..++.....+-.+-......+.. +-..++-.-.++..... ..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHH-HHHHcccHHHHHHH-HHHHH
Q 016124 178 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA-SYSRSKNFVEAERL-LRICL 255 (394)
Q Consensus 178 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~-~~~a~ 255 (394)
...+.......-.....-|......+-++.+++.++...+.....-|......|..... .-...++-+++.+. +++-+
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl 662 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKL 662 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHH
Q ss_pred HHHHhhcCCCCC-------cchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 256 DIMTKTVGPDDQ-------SISFPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 256 ~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
..+......-+| .....+...+.++.+.|+.++|+..+-..+.
T Consensus 663 ~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 663 LDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
No 450
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.81 E-value=1.3e+02 Score=26.24 Aligned_cols=142 Identities=10% Similarity=0.120 Sum_probs=95.9
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhh
Q 016124 25 MYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 102 (394)
Q Consensus 25 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 102 (394)
..+.+.++.+|...-+..+.-.... .. -+-..+..++.+..+|...|+...-...+..-+.... .+.+....+..
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt--Lrhd~e~qavL 211 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT--LRHDEEGQAVL 211 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh--hcCcchhHHHH
Confidence 3445688999888776655432110 00 0123456677788888888886666666555444332 23345556667
Q ss_pred hHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016124 103 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 173 (394)
Q Consensus 103 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 173 (394)
.+.|-..|...+.|+.|.....++.-- . ...+...++.++.+|.+..-+++|..|.+++-+|+....
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 777888999999999998887765411 1 112336778889999999999999999999999988643
No 451
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=57.46 E-value=23 Score=17.56 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhh----hchHHHHHHHHHHHH
Q 016124 17 AILLHMGSMYSTL----ENYEKSMLVYQRVIN 44 (394)
Q Consensus 17 ~~~~~l~~~~~~~----g~~~~A~~~~~~al~ 44 (394)
.+.+.+|..|..- .+..+|..+++++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3466778777632 378899999988764
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=57.06 E-value=1.3e+02 Score=26.10 Aligned_cols=60 Identities=5% Similarity=0.025 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHhhchhHHHHHHH
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL--GSIGRAKKAVEIYH 82 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~ 82 (394)
...+..++..++|..|...|.+++... ..+........+..+...| +..-++++|.+.++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345668899999999999999987642 2222334455555665555 45667888998888
No 453
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.80 E-value=47 Score=30.40 Aligned_cols=80 Identities=19% Similarity=-0.011 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCCh
Q 016124 230 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 309 (394)
Q Consensus 230 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 309 (394)
....++..+..+|-.++|++... +|+. .+ .+..+.|+++.|..+..++-.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~-------------D~d~---rF---elal~lgrl~iA~~la~e~~s----------- 665 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST-------------DPDQ---RF---ELALKLGRLDIAFDLAVEANS----------- 665 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC-------------Chhh---hh---hhhhhcCcHHHHHHHHHhhcc-----------
Confidence 34456666677776666654321 1111 11 244677888888776665422
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 016124 310 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 342 (394)
Q Consensus 310 ~~~~~~~~l~~~~~~~g~~~~~A~~~~~~al~~ 342 (394)
..-|..||.+....|+.. .|.+++.++..+
T Consensus 666 --~~Kw~~Lg~~al~~~~l~-lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 666 --EVKWRQLGDAALSAGELP-LASECFLRARDL 695 (794)
T ss_pred --hHHHHHHHHHHhhcccch-hHHHHHHhhcch
Confidence 224788999999999999 999999998764
No 454
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.55 E-value=46 Score=20.69 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 49 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 49 (394)
+..+...|.-.-..|++++|+.+|.++++.+...
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445666777788999999999999999987654
No 455
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.28 E-value=41 Score=20.01 Aligned_cols=34 Identities=26% Similarity=0.171 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHhh
Q 016124 359 KKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV 392 (394)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 392 (394)
......+...|++++|.++..+...-.......+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~~~~~s~l~ 60 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKDLQQESELL 60 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567889999999999999887776665543
No 456
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.89 E-value=2.2e+02 Score=28.41 Aligned_cols=113 Identities=9% Similarity=0.136 Sum_probs=78.9
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcch
Q 016124 20 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 99 (394)
Q Consensus 20 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 99 (394)
..+...+.....|++|+..|++...-+ +....--++.+..|.....+-.-..-.+.|.+|+..++... +.+..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 551 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGA 551 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCC
Confidence 345567788888999999998876543 12234456777888777665544444467777887777765 33444
Q ss_pred HhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 016124 100 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 144 (394)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 144 (394)
+--|..-|.+|...|++++-++++.-|++.+. .+|.....
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 591 (932)
T PRK13184 552 PLEYLGKALVYQRLGEYNEEIKSLLLALKRYS-----QHPEISRL 591 (932)
T ss_pred chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcC-----CCCccHHH
Confidence 45567778899999999999999999998753 45654443
No 457
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.93 E-value=51 Score=20.41 Aligned_cols=28 Identities=43% Similarity=0.545 Sum_probs=22.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 148 LAHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 148 la~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.|.-.-..|++++|+.+|..+++.+...
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3444556799999999999999987654
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.98 E-value=1.8e+02 Score=26.32 Aligned_cols=76 Identities=8% Similarity=0.014 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCc-HHHHHHHHHHHHHHHHHhhCCCc
Q 016124 60 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTKVYGEND 138 (394)
Q Consensus 60 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 138 (394)
.+........+.+.+.+--..|.+++.. +|..+..|..-+.-.+..+. .+.|...+.+++.. .++.
T Consensus 107 lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~-----npds 173 (568)
T KOG2396|consen 107 LWLSYIAFCKKKKTYGEVKKIFAAMLAK--------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF-----NPDS 173 (568)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc-----CCCC
Confidence 3444444455556677777888888776 56666666666655555554 88899999999886 4555
Q ss_pred hHHHHHHHHH
Q 016124 139 GRVGMAMCSL 148 (394)
Q Consensus 139 ~~~~~~~~~l 148 (394)
|.....++.+
T Consensus 174 p~Lw~eyfrm 183 (568)
T KOG2396|consen 174 PKLWKEYFRM 183 (568)
T ss_pred hHHHHHHHHH
Confidence 6554444433
No 459
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=52.03 E-value=2e+02 Score=26.57 Aligned_cols=317 Identities=13% Similarity=0.006 Sum_probs=148.9
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhh-HhH
Q 016124 28 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL-FSL 106 (394)
Q Consensus 28 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~l 106 (394)
..++..+.+..++.+....-. ..|.....+...|..-.+.|..+.+...|++++.-.. .....+ ..+
T Consensus 53 ~~~~~~~~~~~~r~~y~~fL~----kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip--------~SvdlW~~Y~ 120 (577)
T KOG1258|consen 53 QENDSIEDVDALREVYDIFLS----KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP--------LSVDLWLSYL 120 (577)
T ss_pred hccCchhHHHHHHHHHHHHHh----hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh--------hHHHHHHHHH
Confidence 334444444555555444322 2356666677788888999999999999999987642 222222 223
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHH
Q 016124 107 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 186 (394)
Q Consensus 107 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (394)
+.+...-|+.+.-...|++|......-+ .....+-..-..-..++++..-...|++.+++-... -+...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF-----~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~------~~~~f 189 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDF-----LSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQ------LNRHF 189 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccch-----hccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhH------hHHHH
Confidence 3444456777777777777776643221 111122222222356677777777777777652210 00000
Q ss_pred HHHHHHHHH--HHHcCChHHHHHHHHHHHH---------------HHHHhhCCCCccHHHHHHHHH-------HHHHHcc
Q 016124 187 NMRIDLAEL--LHIVGRGQEGRELLEECLL---------------ITEKYKGKEHPSFVTHLLNLA-------ASYSRSK 242 (394)
Q Consensus 187 ~~~~~la~~--~~~~g~~~~A~~~~~~a~~---------------~~~~~~~~~~~~~~~~~~~la-------~~~~~~g 242 (394)
..+...... ....-..++....-..... ..-...+...+........+. .++...-
T Consensus 190 ~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 190 DRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred HHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 000000000 0001112222211111110 000000000111111111111 1122222
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 016124 243 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ 322 (394)
Q Consensus 243 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (394)
...+.+-.++..+...-....+..+.....|......-...|+++...-.+++++--+ ......|...+...
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m 341 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWM 341 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHH
Confidence 2223333333332211111122233344455666666677888888888888877544 22234455666666
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Q 016124 323 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 383 (394)
Q Consensus 323 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 383 (394)
...|+.. -|...+..+.++.. +.. ..+...-+..-...|++..|...+++..+
T Consensus 342 ~~~~~~~-~~~~~~~~~~~i~~----k~~---~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 342 ESSGDVS-LANNVLARACKIHV----KKT---PIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHcCchh-HHHHHHHhhhhhcC----CCC---cHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 6667666 55555555554432 222 23333445566667777777777776654
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.39 E-value=1.1e+02 Score=29.21 Aligned_cols=105 Identities=14% Similarity=0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHHhhc
Q 016124 186 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS---RSKNFVEAERLLRICLDIMTKTV 262 (394)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~~~~ 262 (394)
..+..++-..|....+|+.-+++.+..-.+-....-.+++. +.+..+-++. +-|+-++|+...-.+++. -
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~n---v~f~YaFALNRRNr~GDRakAL~~~l~lve~----e 273 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHN---VRFHYAFALNRRNRPGDRAKALNTVLPLVEK----E 273 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCc---eEEEeeehhcccCCCccHHHHHHHHHHHHHh----c
Confidence 34446777788888899887777665433310000001111 1111122222 346777777766666552 1
Q ss_pred CCCCCcchHHHHHHHHHHH---------hhcChHHHHHHHHHHHHHH
Q 016124 263 GPDDQSISFPMLHLGITLY---------HLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 263 ~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~~~ 300 (394)
|+-.| ..+...|.+|. ..+..+.|+++|+++.+..
T Consensus 274 g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 274 GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 22223 23334455554 3456677888888887643
No 461
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.62 E-value=1.4e+02 Score=24.42 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
.....++=..+...++++.|....++.+.+ .|....-+..-|.+|.+.|.+.-|++-+...++..
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 344556667788899999999999988874 23333444567899999999999999888876654
No 462
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.92 E-value=1.3e+02 Score=23.81 Aligned_cols=56 Identities=13% Similarity=-0.093 Sum_probs=40.3
Q ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Q 016124 236 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 299 (394)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 299 (394)
.-+.+.+...+++...+.-++ ..|........+-.++.-.|+|++|...++-+-.+
T Consensus 9 seLL~~~sL~dai~~a~~qVk--------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK--------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh--------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 345566788888887766555 34555566677778899999999999888766554
No 463
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=47.57 E-value=56 Score=28.18 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCC---ch-HHHHHHHHHHHHHHhhc
Q 016124 288 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED---DT-KLLELLKRVLRIQEREF 347 (394)
Q Consensus 288 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~-~A~~~~~~al~~~~~~~ 347 (394)
.|..+.++|++..+.....+.|. +|..+|.++...|+. +. +=..+|++|-++..+.-
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddPe---tWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN 389 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDPE---TWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN 389 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--TT---HHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCChh---HHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 45566666666665554455565 455666666555542 10 23456777766665543
No 464
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=47.56 E-value=67 Score=19.95 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHh
Q 016124 16 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 50 (394)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 50 (394)
+..+...|...-..|++++|+.+|.++++.+....
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34456677778889999999999999999876643
No 465
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=46.69 E-value=40 Score=17.10 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=17.3
Q ss_pred HHHHHHH--HHHHhh-----hchHHHHHHHHHHHH
Q 016124 17 AILLHMG--SMYSTL-----ENYEKSMLVYQRVIN 44 (394)
Q Consensus 17 ~~~~~l~--~~~~~~-----g~~~~A~~~~~~al~ 44 (394)
.+.+.+| .++..- .++++|..+|+++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4556677 433322 257888888888754
No 466
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.88 E-value=1.9e+02 Score=24.63 Aligned_cols=28 Identities=4% Similarity=-0.168 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016124 190 IDLAELLHIVGRGQEGRELLEECLLITE 217 (394)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~a~~~~~ 217 (394)
.+-|.++...++|.++...+..+-...+
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 4568888899999888887776654443
No 467
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.86 E-value=59 Score=28.15 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Q 016124 314 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 345 (394)
Q Consensus 314 ~~~~l~~~~~~~g~~~~~A~~~~~~al~~~~~ 345 (394)
+...+|.++...++++ +|+.+|++.+.+..+
T Consensus 24 ~~V~~gl~~dE~~~~e-~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWE-NALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHhhcchhhhcCHH-HHHHHHHHHHHHHHh
Confidence 4567888999999999 999999999988766
No 468
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=45.40 E-value=75 Score=19.85 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=21.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 149 AHAKCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 149 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
|.-.-..|++++|+.+|..+++.+...
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 344456799999999999999987653
No 469
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.00 E-value=97 Score=26.48 Aligned_cols=111 Identities=8% Similarity=0.011 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCC
Q 016124 57 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 136 (394)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 136 (394)
....+..++......+.....+....+|+...... .......+..+-.+....++|.-+..++.--+.-.....+.
T Consensus 101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~----~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h 176 (422)
T KOG2582|consen 101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS----NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPH 176 (422)
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhccC----ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCC
Confidence 34455667777777777777777778877765432 22444556666677778888877776665433322222222
Q ss_pred CchHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 137 NDGRV-GMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 137 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
.+|.. ...++.=|.++...++++.|+.+|+.++-+
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 33433 334455577888999999999999998764
No 470
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=44.12 E-value=1e+02 Score=21.14 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016124 228 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 268 (394)
Q Consensus 228 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 268 (394)
+..+...|..+...|+.+.|.-+|-+.+.+...+ +.||+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki--~~Hpd 76 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI--PKHPD 76 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH--CCSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hcCcc
Confidence 3445667889999999999999999999998544 44554
No 471
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=44.02 E-value=77 Score=19.60 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHh
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 50 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 50 (394)
.+...|.-.-..|++++|+.+|..+++.+....
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 345566677788999999999999999876643
No 472
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=43.89 E-value=80 Score=19.75 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=19.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhc
Q 016124 152 KCANGNAEEAVELYKKALRVIKDS 175 (394)
Q Consensus 152 ~~~~g~~~~A~~~~~~a~~~~~~~ 175 (394)
.-..|+|++|..+|..+++.+...
T Consensus 16 ~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 16 KEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344589999999999999987653
No 473
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=43.85 E-value=1e+02 Score=26.69 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcH-----HHHHHHHHHHHHHHHH
Q 016124 76 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-----VDAESVFSRILKIYTK 132 (394)
Q Consensus 76 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~al~~~~~ 132 (394)
.|..+.++|+...++....+.| .+|..+|.++..+|+. .+-..+|.+|-.+..+
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddP---etWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDP---ETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKK 387 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--T---THHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCh---hHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 3555666666665554433333 3445555555555443 2234555555555444
No 474
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.12 E-value=83 Score=19.72 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 016124 18 ILLHMGSMYSTLENYEKSMLVYQRVINVLES 48 (394)
Q Consensus 18 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 48 (394)
.+..-|..--..|++++|+.+|.++++.+..
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3455566666789999999999999998865
No 475
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=41.99 E-value=1.3e+02 Score=21.59 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=33.2
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q 016124 238 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 298 (394)
Q Consensus 238 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 298 (394)
...+|+-++-.+.+..... +....+..+..+|.+|...|+..+|-+++.+|-+
T Consensus 96 lv~~~kkDqLdki~~~l~k--------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKK--------NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHhh--------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3445555554444444332 2233456778999999999999999999998865
No 476
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=41.81 E-value=89 Score=21.83 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016124 145 MCSLAHAKCANGNAEEAVELYKKALRVI 172 (394)
Q Consensus 145 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 172 (394)
...+|..+...|++++|..+|-+|+.++
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 3467888888999999999999999865
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.11 E-value=9.9 Score=19.01 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=14.5
Q ss_pred CchhhhhhHHHHHHHHHHHHHhh
Q 016124 370 RKEEKFPLKKRLSNLRMKYKQKV 392 (394)
Q Consensus 370 ~~~~A~~~~~~a~~~~~~~~~~~ 392 (394)
.++.|..+|++.+...+..+.-+
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH
Confidence 35667777777777665554443
No 478
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=40.00 E-value=2.9e+02 Score=25.08 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=39.2
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHcCCCChhH
Q 016124 233 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIREIAFGKDSLPV 311 (394)
Q Consensus 233 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~ 311 (394)
+......+.+.+.+--..|.+++. .||..+..|..-|.-.+..+. .+.|..++.++++.. |+.|..
T Consensus 110 ~yi~f~kk~~~~~~v~ki~~~~l~--------~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-----pdsp~L 176 (568)
T KOG2396|consen 110 SYIAFCKKKKTYGEVKKIFAAMLA--------KHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-----PDSPKL 176 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHH--------hCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-----CCChHH
Confidence 333333344446666666666665 355555566555555555444 666777777776643 555554
Q ss_pred HHHHHH
Q 016124 312 GEALDC 317 (394)
Q Consensus 312 ~~~~~~ 317 (394)
...++.
T Consensus 177 w~eyfr 182 (568)
T KOG2396|consen 177 WKEYFR 182 (568)
T ss_pred HHHHHH
Confidence 444433
No 479
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=39.81 E-value=50 Score=22.72 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHcCCCChh
Q 016124 271 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 310 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 310 (394)
..+...|..+...|+.+.|.-+|-+.+.+...+ +.||+
T Consensus 39 ~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki--~~Hpd 76 (115)
T PF08969_consen 39 NKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI--PKHPD 76 (115)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH--CCSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hcCcc
Confidence 345667889999999999999999999988444 55554
No 480
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=39.57 E-value=75 Score=26.95 Aligned_cols=103 Identities=17% Similarity=0.029 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCC------C-----CcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT------E-----SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
....+.-.+..+++..|..-+.+++......... + .........+++.+-...+.+..|......++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~- 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR- 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-
Confidence 3345677888999999999999988776531110 0 011223455667777777887777766655554
Q ss_pred HHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 130 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
..+....+++..+..+....++++|++.++.+...
T Consensus 304 -------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 304 -------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred -------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 24555667889999999999999999999988763
No 481
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=38.85 E-value=2e+02 Score=22.83 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016124 108 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 171 (394)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 171 (394)
.-+...+..++|+...+.-++. .|........+-.+++-.|+|++|..-++-+-.+
T Consensus 9 seLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3456677888888877665543 3444445556677889999999999988877664
No 482
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=38.70 E-value=3.5e+02 Score=25.65 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=12.6
Q ss_pred HHHHhhhchHHHHHHHHH
Q 016124 24 SMYSTLENYEKSMLVYQR 41 (394)
Q Consensus 24 ~~~~~~g~~~~A~~~~~~ 41 (394)
.++.-.|+|+.|+.++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 445567899999988766
No 483
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=37.48 E-value=1.7e+02 Score=21.61 Aligned_cols=109 Identities=17% Similarity=0.084 Sum_probs=66.9
Q ss_pred HhHHHHHHHhCcHHHHHHHHHHHHHHHHHhh------C-----------------------C--CchHHHHHHHHHHHHH
Q 016124 104 FSLGSLFIKEGKAVDAESVFSRILKIYTKVY------G-----------------------E--NDGRVGMAMCSLAHAK 152 (394)
Q Consensus 104 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~-----------------------~--~~~~~~~~~~~la~~~ 152 (394)
...+......|+.++|...+.++........ . . ............+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 3456777788999999999999887664220 0 0 0122334556677888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016124 153 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 214 (394)
Q Consensus 153 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 214 (394)
...|+...|.+.+..+-.-..-. ...-|-.........+..+...|++.+|...+..++.
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~--~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDIT--TALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEE--EEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceee--eeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 89999999998887653211100 0001112223336778889999999999999988864
No 484
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=37.23 E-value=2.8e+02 Score=24.06 Aligned_cols=101 Identities=17% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCC-----cch
Q 016124 197 HIVGRGQEGRELLEECLLITEKYKGK-EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-----SIS 270 (394)
Q Consensus 197 ~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~ 270 (394)
......+++-....++........++ ..|..-...+.++......----+-.+..+..++..+...+++.+ +..
T Consensus 141 ~~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v 220 (413)
T COG5600 141 LNQDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVV 220 (413)
T ss_pred hhHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhccee
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHH
Q 016124 271 FPMLHLGITLYHLNRDKEAEKLVLEAL 297 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~a~ 297 (394)
...+.+|.+|....++.+|...+.+|.
T Consensus 221 ~f~YYLG~~~l~~en~heA~~~L~~aF 247 (413)
T COG5600 221 VFHYYLGIYYLLNENFHEAFLHLNEAF 247 (413)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHH
No 485
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.23 E-value=2.3e+02 Score=23.20 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHH
Q 016124 56 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 130 (394)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 130 (394)
.......++=..+...++++.|....++.+.+ .|..+.-....|.+|...|-+.-|+..++..++.+
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 34555666677788889999999999988876 34444556678999999999999999998877763
No 486
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=36.75 E-value=26 Score=24.39 Aligned_cols=33 Identities=12% Similarity=-0.110 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Q 016124 358 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 390 (394)
Q Consensus 358 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 390 (394)
-..+|..+...|++++|...|-+|+.++++-.+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 345677777788888888888888776655443
No 487
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.37 E-value=2.1e+02 Score=25.04 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 016124 229 THLLNLAASYSRSKNFVEAERLLRICLDIMTK 260 (394)
Q Consensus 229 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 260 (394)
.+..++|.+|-..+++++|+.+|++.+.+..+
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999998766
No 488
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.54 E-value=4e+02 Score=25.74 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHH---HHHHHHHHHHH---cCChHHHHHHHHHHHH
Q 016124 141 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN---MRIDLAELLHI---VGRGQEGRELLEECLL 214 (394)
Q Consensus 141 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~la~~~~~---~g~~~~A~~~~~~a~~ 214 (394)
...+..++-..|....+|+.-+++.+..-.+- +...++. +.+..+..+.+ -|+-++|+...-.+++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP--------~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve 271 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIP--------DTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE 271 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCc--------chhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHH
Confidence 34555667777888888888777766544431 1111111 11112222322 4666777766655554
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHH---------HHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcC
Q 016124 215 ITEKYKGKEHPSFVTHLLNLAASY---------SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 285 (394)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 285 (394)
. .|+-.|+ .+...|++| ...+..+.|+++|+++.+.. |. ..+-.+++.++...|+
T Consensus 272 ~----eg~vapD---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve--------P~-~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 272 K----EGPVAPD---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE--------PL-EYSGINLATLLRAAGE 335 (1226)
T ss_pred h----cCCCCCc---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC--------ch-hhccccHHHHHHHhhh
Confidence 2 2222333 233334444 34466778888998887731 21 1223467777777765
Q ss_pred h
Q 016124 286 D 286 (394)
Q Consensus 286 ~ 286 (394)
.
T Consensus 336 ~ 336 (1226)
T KOG4279|consen 336 H 336 (1226)
T ss_pred h
Confidence 3
No 489
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.46 E-value=2.7e+02 Score=23.45 Aligned_cols=80 Identities=9% Similarity=-0.003 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHh-HHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCch
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS-LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 139 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 139 (394)
+...+......|.+.+--..|.+++.. +|..+..|.. .+.-+...++++.+...+.+++.+ .++.|
T Consensus 110 w~~y~~Y~~k~k~y~~~~nI~~~~l~k--------hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~-----N~~~p 176 (435)
T COG5191 110 WSQYAAYVIKKKMYGEMKNIFAECLTK--------HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM-----NSRSP 176 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc-----CCCCc
Confidence 333344444555566666666666553 5655555544 455677889999999999999987 45667
Q ss_pred HHHHHHHHHHHHHH
Q 016124 140 RVGMAMCSLAHAKC 153 (394)
Q Consensus 140 ~~~~~~~~la~~~~ 153 (394)
.....+..+-..|.
T Consensus 177 ~iw~eyfr~El~yi 190 (435)
T COG5191 177 RIWIEYFRMELMYI 190 (435)
T ss_pred hHHHHHHHHHHHHH
Confidence 66656655544443
No 490
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.26 E-value=1.4e+02 Score=25.62 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 016124 143 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 222 (394)
Q Consensus 143 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 222 (394)
..+..++......+.+...+....+++...... ...+..++..+-.+....++|.-+..+++--+.-..+..+.
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~------~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h 176 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS------NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPH 176 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHhccC------ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCC
Confidence 345667777778888888888888888866432 22444555666677778888877777665433222222222
Q ss_pred CCccH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 016124 223 EHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLDI 257 (394)
Q Consensus 223 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 257 (394)
.+|.. ...++.=|.++...++++.|..+|..++.+
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 33333 333444577788899999999999887753
No 491
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.65 E-value=1.2e+02 Score=26.57 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHh
Q 016124 61 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 133 (394)
Q Consensus 61 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 133 (394)
+..|-+.+.-.|++... .+.+++..+..-...|. ..+-+..|-+|..+++|.+|+..|...+-..++.
T Consensus 238 L~GLlR~H~lLgDhQat----~q~idi~pk~iy~t~p~-c~VTY~VGFayLmmrryadai~~F~niLlyIqrt 305 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQAT----SQILDIMPKEIYGTEPM-CRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRT 305 (525)
T ss_pred HHHHHHHHHHhhhhHhh----hhhhhcCchhhcCcccc-eeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677884442 22233322211111222 2333789999999999999999999988765543
No 492
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=33.62 E-value=4.6e+02 Score=25.59 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhcCCCC
Q 016124 17 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 96 (394)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 96 (394)
..+..|-.+.+..|++++-...-.++.++. +..|....-|..-=......+...++...|++++.-+.... ..
T Consensus 114 ~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~--iw 186 (881)
T KOG0128|consen 114 AQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVP--IW 186 (881)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccch--HH
Confidence 345666677778888877655555544443 22333222222111111223677788888888875431110 01
Q ss_pred cchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016124 97 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 170 (394)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 170 (394)
...+......+..+...++++.-...|.+++........ ........+...-..|...-..++-+.++...+.
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~ 259 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK 259 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 112222333344456668888899999999876544332 2233444555555555555555666666666554
No 493
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.50 E-value=3.4e+02 Score=23.97 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 016124 231 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 302 (394)
Q Consensus 231 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 302 (394)
+..|-+++.-.|++..-.+ .+++..+..-+..|....+ +..|-+|...|++.+|+..|-..+-..++
T Consensus 238 L~GLlR~H~lLgDhQat~q----~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niLlyIqr 304 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQ----ILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNILLYIQR 304 (525)
T ss_pred HHHHHHHHHHhhhhHhhhh----hhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777888554222 2333322222223333333 77899999999999999999888765443
No 494
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=33.30 E-value=62 Score=22.00 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHH
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVIN 44 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~ 44 (394)
+..++..|...|.+++|++.+.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 57789999999999999999887655
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.79 E-value=1.1e+02 Score=20.36 Aligned_cols=34 Identities=9% Similarity=-0.095 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHH
Q 016124 356 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 389 (394)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 389 (394)
-.+..||.+|...|+.+.|.+-|+.--.+.++-+
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 3566789999999999999999988777766544
No 496
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=31.65 E-value=2.5e+02 Score=21.91 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Q 016124 183 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 261 (394)
Q Consensus 183 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 261 (394)
.....+..+....+...++++.|..++...-.+.... ...-......+.-|.+....|+...+.+..++++++.+..
T Consensus 125 ~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~--~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~l 201 (220)
T TIGR01716 125 RRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPE--DDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDEL 201 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHc
Confidence 4455666777878888889999988887765442100 0000111122233444456777777777777777765543
No 497
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=31.57 E-value=1e+02 Score=26.23 Aligned_cols=102 Identities=10% Similarity=0.072 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhCCc------------hHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 016124 19 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT------------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 86 (394)
Q Consensus 19 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 86 (394)
.-..+...+..++++.|..-+.+++...... ..+ .........+++.+-...+.+..|+.....++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~-s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQ-SRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhccc-ccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 3446777889999999999999998765421 111 112233455567777777777777766555544
Q ss_pred HHHHhcCCCCcchHhhhHhHHHHHHHhCcHHHHHHHHHHHHHH
Q 016124 87 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 129 (394)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 129 (394)
+.+....+++..+..+....++++|+..+..+...
T Consensus 304 --------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 304 --------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred --------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 35566778999999999999999999999888654
No 498
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=4.6e+02 Score=24.43 Aligned_cols=105 Identities=18% Similarity=0.017 Sum_probs=67.8
Q ss_pred CCchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHH
Q 016124 179 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI-CLDI 257 (394)
Q Consensus 179 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~ 257 (394)
++.++.+..... ++..+...++...+.-....++.. ++..+.+..+|+......|....+...+.. +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 345555544434 667777778877777666666553 566777888898888777776666655544 3321
Q ss_pred HHhhcCCCCCcchHHH------HHHHHHHHhhcChHHHHHHHHHHHHHH
Q 016124 258 MTKTVGPDDQSISFPM------LHLGITLYHLNRDKEAEKLVLEALYIR 300 (394)
Q Consensus 258 ~~~~~~~~~~~~~~~~------~~la~~~~~~g~~~~A~~~~~~a~~~~ 300 (394)
.|...... +.++......|+..++....+++.+..
T Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 132 --------SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred --------CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 12222222 236888888888889888888887765
No 499
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.72 E-value=3.6e+02 Score=23.10 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=18.7
Q ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 016124 105 SLGSLFIKEGKAVDAESVFSRILKIYT 131 (394)
Q Consensus 105 ~l~~~~~~~g~~~~A~~~~~~al~~~~ 131 (394)
.-|.++...++|.+....+.-+-..++
T Consensus 63 ~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 63 QNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 447788888888887777766554443
No 500
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.62 E-value=2.1e+02 Score=27.35 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=58.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016124 193 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--KNFVEAERLLRICLDIMTKTVGPDDQSIS 270 (394)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 270 (394)
++..+..+++..+.--|..++.+.. .+|+..+....+.+.+++.. |++..++.-..-++. ..|.+.
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp----~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~--------~~p~i~ 127 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLP----KDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALE--------SQPRIS 127 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheecc----ccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhh--------ccchHH
Confidence 4455666677777666666555432 36677777778888877765 567777665555554 456777
Q ss_pred HHHHHHHHHHHhhcChHHHHHH
Q 016124 271 FPMLHLGITLYHLNRDKEAEKL 292 (394)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~ 292 (394)
.++...+.+|...+.++-|.+.
T Consensus 128 ~~Ll~r~~~y~al~k~d~a~rd 149 (748)
T KOG4151|consen 128 KALLKRARKYEALNKLDLAVRD 149 (748)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH
Confidence 7777777888887776666665
Done!