Query 016125
Match_columns 394
No_of_seqs 234 out of 1493
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 1.5E-79 3.3E-84 591.0 38.3 359 19-394 56-414 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 5.4E-35 1.2E-39 286.7 31.5 276 28-392 33-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 2.7E-34 5.8E-39 281.5 32.0 283 22-392 21-318 (318)
4 PRK09546 zntB zinc transporter 100.0 1.5E-32 3.2E-37 269.9 33.6 271 26-392 35-324 (324)
5 PRK11085 magnesium/nickel/coba 100.0 4.4E-30 9.6E-35 249.5 29.6 276 27-392 25-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 100.0 6.2E-29 1.3E-33 239.4 28.3 275 26-388 2-292 (292)
7 PRK11085 magnesium/nickel/coba 94.5 5.5 0.00012 39.2 21.6 180 149-391 128-312 (316)
8 COG0598 CorA Mg2+ and Co2+ tra 93.8 7.3 0.00016 38.3 20.4 104 279-391 212-318 (322)
9 PF10267 Tmemb_cc2: Predicted 93.5 7.4 0.00016 39.4 17.9 65 292-362 300-373 (395)
10 PRK09546 zntB zinc transporter 93.4 5.9 0.00013 38.9 17.2 21 330-350 263-283 (324)
11 PF01544 CorA: CorA-like Mg2+ 90.1 5.4 0.00012 37.9 12.4 71 285-363 201-273 (292)
12 PF07332 DUF1469: Protein of u 89.4 4.3 9.4E-05 33.7 9.8 52 301-353 11-62 (121)
13 PF02656 DUF202: Domain of unk 87.4 4.9 0.00011 30.2 8.1 19 373-391 55-73 (73)
14 PF03904 DUF334: Domain of unk 87.3 25 0.00054 32.7 17.1 16 330-345 153-168 (230)
15 PF11286 DUF3087: Protein of u 76.0 7.4 0.00016 34.4 5.8 54 330-392 23-76 (165)
16 TIGR02230 ATPase_gene1 F0F1-AT 75.5 7.2 0.00016 31.7 5.2 27 330-356 44-70 (100)
17 PF05478 Prominin: Prominin; 73.3 1.6E+02 0.0035 32.9 18.8 22 337-358 429-450 (806)
18 TIGR00383 corA magnesium Mg(2+ 73.2 93 0.002 30.1 18.3 63 285-350 214-277 (318)
19 PF02060 ISK_Channel: Slow vol 69.3 6.7 0.00015 33.0 3.8 51 341-391 14-71 (129)
20 PF10805 DUF2730: Protein of u 68.1 28 0.00061 28.4 7.3 45 172-219 47-91 (106)
21 TIGR01478 STEVOR variant surfa 67.1 16 0.00034 35.2 6.2 14 212-225 112-125 (295)
22 PRK15348 type III secretion sy 64.0 7.4 0.00016 36.9 3.5 40 332-371 185-230 (249)
23 KOG3850 Predicted membrane pro 62.1 1.8E+02 0.0039 29.3 20.0 26 328-358 394-419 (455)
24 PTZ00370 STEVOR; Provisional 57.9 33 0.00071 33.1 6.6 14 212-225 111-124 (296)
25 PF13042 DUF3902: Protein of u 57.8 25 0.00053 30.6 5.2 65 320-389 61-125 (161)
26 COG5130 YIP3 Prenylated rab ac 57.7 46 0.001 28.7 6.8 17 336-352 83-99 (169)
27 PF01102 Glycophorin_A: Glycop 56.4 18 0.00039 30.5 4.1 25 364-389 67-91 (122)
28 PF10272 Tmpp129: Putative tra 55.8 18 0.00039 36.2 4.7 44 310-353 18-61 (358)
29 KOG1853 LIS1-interacting prote 54.1 2E+02 0.0044 27.4 15.0 73 154-226 46-124 (333)
30 PF06127 DUF962: Protein of un 52.8 91 0.002 24.8 7.6 35 307-344 2-36 (95)
31 TIGR02132 phaR_Bmeg polyhydrox 52.8 77 0.0017 28.4 7.6 55 162-221 81-135 (189)
32 PF11026 DUF2721: Protein of u 52.5 1.4E+02 0.0031 25.1 10.1 71 282-352 13-93 (130)
33 PF11368 DUF3169: Protein of u 51.4 52 0.0011 31.0 7.0 29 321-349 5-33 (248)
34 PF10856 DUF2678: Protein of u 51.3 16 0.00034 30.4 2.9 20 329-348 32-51 (118)
35 KOG4343 bZIP transcription fac 51.3 34 0.00073 35.8 5.9 79 275-358 301-384 (655)
36 PF04156 IncA: IncA protein; 51.2 22 0.00048 31.8 4.3 20 330-349 6-25 (191)
37 PF06210 DUF1003: Protein of u 50.5 40 0.00086 27.8 5.2 55 333-389 3-58 (108)
38 PF05478 Prominin: Prominin; 49.1 4.2E+02 0.0092 29.6 18.6 22 360-381 407-428 (806)
39 PF07798 DUF1640: Protein of u 48.7 2E+02 0.0042 25.6 18.3 31 313-348 143-173 (177)
40 PF06196 DUF997: Protein of un 47.0 1.3E+02 0.0029 23.2 7.4 26 330-355 8-33 (80)
41 PF11712 Vma12: Endoplasmic re 46.6 1.6E+02 0.0034 25.2 8.7 9 330-338 86-94 (142)
42 PF15086 UPF0542: Uncharacteri 45.3 42 0.00092 25.4 4.1 29 359-387 17-45 (74)
43 PF06645 SPC12: Microsomal sig 45.2 14 0.00031 28.3 1.7 56 330-394 12-69 (76)
44 PF13273 DUF4064: Protein of u 45.2 41 0.0009 26.8 4.5 27 327-353 4-30 (100)
45 PF04129 Vps52: Vps52 / Sac2 f 44.8 1.2E+02 0.0025 32.0 9.0 69 277-352 29-97 (508)
46 PF04971 Lysis_S: Lysis protei 44.2 29 0.00064 26.0 3.1 55 331-390 5-59 (68)
47 PRK02935 hypothetical protein; 43.2 1.9E+02 0.004 23.8 8.1 17 371-387 44-60 (110)
48 PRK13182 racA polar chromosome 42.5 1.3E+02 0.0029 26.9 7.8 28 192-219 117-144 (175)
49 PF07889 DUF1664: Protein of u 41.5 1.7E+02 0.0037 24.8 7.8 62 158-219 52-115 (126)
50 PF03408 Foamy_virus_ENV: Foam 39.9 48 0.001 36.4 5.1 96 291-393 861-975 (981)
51 PF05591 DUF770: Protein of un 38.0 53 0.0011 28.9 4.3 39 191-229 110-151 (157)
52 PF14654 Epiglycanin_C: Mucin, 37.4 54 0.0012 26.4 3.8 29 360-388 16-44 (106)
53 PRK14584 hmsS hemin storage sy 37.2 1.5E+02 0.0032 26.1 6.9 27 327-354 17-43 (153)
54 PF04341 DUF485: Protein of un 37.0 2.1E+02 0.0045 22.5 8.6 65 318-390 11-78 (91)
55 PF11177 DUF2964: Protein of u 36.8 92 0.002 23.0 4.7 33 330-364 9-41 (62)
56 PF04163 Tht1: Tht1-like nucle 36.6 5.5E+02 0.012 27.4 18.9 55 282-336 392-448 (544)
57 PF06570 DUF1129: Protein of u 36.6 1.1E+02 0.0024 27.8 6.5 12 107-118 7-18 (206)
58 PF04611 AalphaY_MDB: Mating t 35.9 2.8E+02 0.006 23.7 8.1 70 99-202 41-110 (147)
59 PTZ00382 Variant-specific surf 35.6 7.3 0.00016 31.4 -1.3 11 380-390 85-95 (96)
60 PF06609 TRI12: Fungal trichot 35.1 54 0.0012 35.2 4.7 62 316-386 157-218 (599)
61 PF12263 DUF3611: Protein of u 35.0 1.3E+02 0.0028 27.2 6.4 55 329-390 26-81 (183)
62 PF09753 Use1: Membrane fusion 34.8 3.7E+02 0.0081 25.2 10.0 21 191-211 51-71 (251)
63 TIGR03141 cytochro_ccmD heme e 34.8 56 0.0012 22.3 3.2 10 381-390 23-32 (45)
64 PF11346 DUF3149: Protein of u 34.5 94 0.002 21.1 4.1 28 360-389 9-36 (42)
65 PRK15326 type III secretion sy 34.5 2.2E+02 0.0048 22.1 8.7 53 156-208 7-60 (80)
66 PF04136 Sec34: Sec34-like fam 33.9 3.2E+02 0.007 23.8 10.3 22 199-220 34-55 (157)
67 PF09990 DUF2231: Predicted me 33.3 1.7E+02 0.0036 23.4 6.4 24 330-353 7-30 (104)
68 PF04995 CcmD: Heme exporter p 33.1 73 0.0016 21.7 3.6 11 380-390 21-31 (46)
69 PF06160 EzrA: Septation ring 32.8 6.1E+02 0.013 27.0 12.2 58 167-224 75-132 (560)
70 PF10577 UPF0560: Uncharacteri 32.3 45 0.00097 36.7 3.5 29 363-391 273-302 (807)
71 PRK04406 hypothetical protein; 32.0 2.2E+02 0.0048 21.7 6.4 50 163-217 7-56 (75)
72 TIGR01834 PHA_synth_III_E poly 31.8 3.5E+02 0.0075 26.8 9.3 50 172-221 268-317 (320)
73 KOG3208 SNARE protein GS28 [In 31.7 4.3E+02 0.0094 24.7 16.6 29 191-219 87-115 (231)
74 PRK13021 secF preprotein trans 31.6 2E+02 0.0044 28.0 7.7 15 330-344 231-245 (297)
75 TIGR03358 VI_chp_5 type VI sec 31.6 60 0.0013 28.6 3.7 39 191-229 111-152 (159)
76 PF11023 DUF2614: Protein of u 31.5 2.6E+02 0.0057 23.2 7.0 14 374-387 46-59 (114)
77 PF04102 SlyX: SlyX; InterPro 31.4 1.2E+02 0.0026 22.6 4.8 17 195-211 34-50 (69)
78 PF04011 LemA: LemA family; I 31.0 3.8E+02 0.0083 23.8 16.6 49 292-352 120-168 (186)
79 TIGR01167 LPXTG_anchor LPXTG-m 30.7 69 0.0015 19.9 3.0 10 381-390 24-33 (34)
80 PF08317 Spc7: Spc7 kinetochor 29.9 5.4E+02 0.012 25.2 15.4 16 44-59 14-29 (325)
81 PRK13022 secF preprotein trans 29.8 2.4E+02 0.0051 27.3 7.8 15 330-344 232-246 (289)
82 PRK12911 bifunctional preprote 29.7 2.8E+02 0.006 32.8 9.2 31 309-344 1328-1358(1403)
83 PF08173 YbgT_YccB: Membrane b 29.5 1.1E+02 0.0023 18.9 3.4 16 364-379 4-19 (28)
84 PRK02119 hypothetical protein; 29.4 2E+02 0.0044 21.8 5.8 23 196-218 33-55 (73)
85 PRK10881 putative hydrogenase 29.2 2.1E+02 0.0045 29.0 7.6 33 360-392 51-86 (394)
86 PF02392 Ycf4: Ycf4; InterPro 29.0 1.3E+02 0.0029 27.0 5.4 25 330-355 24-48 (180)
87 PF00335 Tetraspannin: Tetrasp 28.8 19 0.00041 31.9 0.0 19 331-349 9-27 (221)
88 PF06570 DUF1129: Protein of u 28.3 2E+02 0.0044 26.1 6.8 14 336-349 88-101 (206)
89 PF11669 WBP-1: WW domain-bind 28.3 63 0.0014 26.2 3.0 10 381-390 38-47 (102)
90 PF10267 Tmemb_cc2: Predicted 28.0 5.8E+02 0.013 26.0 10.4 47 281-328 267-318 (395)
91 PF06103 DUF948: Bacterial pro 28.0 2.9E+02 0.0062 21.4 7.9 16 166-181 32-47 (90)
92 PRK02793 phi X174 lysis protei 27.9 2E+02 0.0044 21.7 5.6 24 195-218 31-54 (72)
93 KOG0994 Extracellular matrix g 27.8 6.7E+02 0.014 29.5 11.3 29 192-220 1224-1252(1758)
94 PRK10517 magnesium-transportin 27.7 2E+02 0.0044 32.6 7.9 47 339-391 855-901 (902)
95 KOG2751 Beclin-like protein [S 27.7 6.9E+02 0.015 25.7 13.8 71 154-227 137-210 (447)
96 PF07086 DUF1352: Protein of u 27.6 2.2E+02 0.0047 25.9 6.6 34 316-350 89-122 (186)
97 TIGR02106 cyd_oper_ybgT cyd op 27.4 1.2E+02 0.0027 19.0 3.4 14 364-377 4-17 (30)
98 PF04226 Transgly_assoc: Trans 27.0 2.2E+02 0.0047 19.7 5.1 11 340-350 10-20 (48)
99 PF05055 DUF677: Protein of un 26.9 6.4E+02 0.014 25.1 10.3 35 279-313 62-96 (336)
100 PRK04325 hypothetical protein; 26.7 2.5E+02 0.0055 21.3 5.9 20 197-216 34-53 (74)
101 PF05360 YiaAB: yiaA/B two hel 26.4 1.8E+02 0.0038 20.6 4.7 36 330-370 3-38 (53)
102 PRK00295 hypothetical protein; 26.3 2.6E+02 0.0057 20.8 5.9 16 199-214 32-47 (68)
103 PF01769 MgtE: Divalent cation 26.3 3.8E+02 0.0083 22.3 8.5 14 378-391 96-109 (135)
104 TIGR00807 malonate_madL malona 26.2 1.6E+02 0.0034 24.7 4.9 53 331-394 6-58 (125)
105 COG0004 AmtB Ammonia permease 26.1 1.6E+02 0.0035 30.1 6.0 53 339-391 203-255 (409)
106 PF12761 End3: Actin cytoskele 26.1 5.1E+02 0.011 23.7 10.2 19 197-215 100-118 (195)
107 PF01957 NfeD: NfeD-like C-ter 26.0 21 0.00045 30.1 -0.2 19 337-355 24-42 (144)
108 PRK14749 hypothetical protein; 25.9 1.7E+02 0.0038 18.2 4.0 20 364-383 4-23 (30)
109 PF10160 Tmemb_40: Predicted m 25.8 3.2E+02 0.007 26.1 7.6 70 320-393 110-187 (261)
110 PF11945 WASH_WAHD: WAHD domai 25.6 2.6E+02 0.0056 27.3 7.2 46 171-224 29-74 (297)
111 COG1842 PspA Phage shock prote 25.6 5.5E+02 0.012 23.9 15.6 41 194-234 53-94 (225)
112 PRK13682 hypothetical protein; 25.2 63 0.0014 22.8 2.1 17 334-350 4-20 (51)
113 PF08372 PRT_C: Plant phosphor 25.0 4.6E+02 0.01 23.1 8.0 62 290-351 62-126 (156)
114 PF04799 Fzo_mitofusin: fzo-li 25.0 5E+02 0.011 23.2 8.6 31 147-177 107-137 (171)
115 PF04504 DUF573: Protein of un 24.8 1.1E+02 0.0024 24.6 3.8 58 150-207 12-70 (98)
116 PF08196 UL2: UL2 protein; In 24.8 1.4E+02 0.0031 21.1 3.7 29 353-382 22-50 (60)
117 PHA03231 glycoprotein BALF4; P 24.6 5.1E+02 0.011 29.1 9.9 18 292-309 632-649 (829)
118 COG4200 Uncharacterized protei 24.5 1.5E+02 0.0032 27.9 5.0 46 340-391 177-234 (239)
119 COG3516 Predicted component of 24.4 85 0.0018 27.8 3.2 39 191-229 116-157 (169)
120 PRK05771 V-type ATP synthase s 24.3 2.1E+02 0.0045 31.0 7.0 29 323-353 391-419 (646)
121 PF03649 UPF0014: Uncharacteri 24.3 6.2E+02 0.013 24.0 10.1 60 330-394 191-250 (250)
122 TIGR00833 actII Transport prot 24.3 2.2E+02 0.0048 32.2 7.5 38 331-369 276-313 (910)
123 PF00746 Gram_pos_anchor: Gram 24.2 25 0.00055 22.9 0.0 12 378-389 28-39 (39)
124 PF11677 DUF3273: Protein of u 24.1 3.2E+02 0.0068 26.2 7.2 36 322-357 21-60 (265)
125 PRK15122 magnesium-transportin 24.0 1.8E+02 0.0038 33.1 6.6 9 384-392 894-903 (903)
126 KOG4603 TBP-1 interacting prot 23.7 5.3E+02 0.011 23.1 8.0 65 156-220 82-150 (201)
127 PF06667 PspB: Phage shock pro 23.7 1.6E+02 0.0035 22.6 4.3 35 186-224 35-69 (75)
128 KOG3684 Ca2+-activated K+ chan 23.6 8.5E+02 0.018 25.4 13.3 42 188-229 384-425 (489)
129 PRK14726 bifunctional preprote 23.4 5.5E+02 0.012 29.1 10.0 16 330-345 777-792 (855)
130 COG5336 Uncharacterized protei 23.2 1.1E+02 0.0025 25.2 3.5 49 335-390 49-97 (116)
131 PF10754 DUF2569: Protein of u 23.2 2.6E+02 0.0057 24.1 6.2 12 382-393 74-85 (149)
132 PRK04778 septation ring format 23.1 8.6E+02 0.019 25.9 11.3 61 165-225 77-137 (569)
133 PRK00846 hypothetical protein; 22.7 3.4E+02 0.0073 21.0 5.9 12 165-176 11-22 (77)
134 TIGR02976 phageshock_pspB phag 22.5 1.8E+02 0.0038 22.3 4.3 34 187-224 36-69 (75)
135 TIGR01598 holin_phiLC3 holin, 22.0 88 0.0019 24.2 2.6 24 330-353 13-36 (78)
136 PF02388 FemAB: FemAB family; 22.0 4.9E+02 0.011 26.4 8.9 55 161-217 243-297 (406)
137 PRK10189 MATE family multidrug 21.9 2.7E+02 0.0058 28.8 7.1 19 375-393 448-466 (478)
138 COG3462 Predicted membrane pro 21.9 4.6E+02 0.01 21.7 7.6 20 330-349 12-31 (117)
139 COG5570 Uncharacterized small 21.5 3.1E+02 0.0067 19.5 6.4 49 160-213 5-53 (57)
140 PRK13694 hypothetical protein; 21.5 4E+02 0.0087 20.8 7.9 17 275-291 63-79 (83)
141 PF10158 LOH1CR12: Tumour supp 21.4 5E+02 0.011 22.1 7.4 50 164-213 53-107 (131)
142 PF11137 DUF2909: Protein of u 21.4 3.5E+02 0.0075 20.0 6.6 58 330-392 3-60 (63)
143 PF07439 DUF1515: Protein of u 21.3 4.7E+02 0.01 21.6 7.8 63 156-219 4-66 (112)
144 PF00901 Orbi_VP5: Orbivirus o 21.3 7.2E+02 0.016 26.1 9.6 77 150-227 141-222 (508)
145 PF02439 Adeno_E3_CR2: Adenovi 21.1 2.2E+02 0.0048 18.9 3.9 16 375-390 16-32 (38)
146 PRK10633 hypothetical protein; 20.8 4.1E+02 0.0089 20.7 7.6 39 331-370 14-52 (80)
147 PRK11644 sensory histidine kin 20.6 2.8E+02 0.0062 28.8 7.0 54 330-393 112-166 (495)
148 PRK02870 heat shock protein Ht 20.6 3.8E+02 0.0082 26.6 7.4 29 320-349 18-47 (336)
149 PRK06926 flagellar motor prote 20.4 1.1E+02 0.0024 29.5 3.5 39 331-372 7-49 (271)
150 PRK11546 zraP zinc resistance 20.3 5.7E+02 0.012 22.1 9.3 67 147-218 44-114 (143)
151 COG2733 Predicted membrane pro 20.2 3.4E+02 0.0073 27.6 6.8 67 319-393 2-69 (415)
152 PRK00736 hypothetical protein; 20.0 3.8E+02 0.0082 19.9 5.7 16 199-214 32-47 (68)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-79 Score=590.98 Aligned_cols=359 Identities=65% Similarity=0.932 Sum_probs=323.5
Q ss_pred hccccCCCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhhcCCCCCCeEEeeeCCeEEeeccceeeEeecCeEEE
Q 016125 19 ATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLL 98 (394)
Q Consensus 19 ~~~~~~~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilv~le~i~~II~~d~vl~ 98 (394)
+.++++.+.+.|++||..|+.+..+++|+.|+++.||+|||||.+||.+++|++|+.|++|||+|+||||||||+++|++
T Consensus 56 ~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll 135 (414)
T KOG2662|consen 56 VSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLL 135 (414)
T ss_pred cccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 99 RDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP 178 (394)
Q Consensus 99 f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~le~~~~~ 178 (394)
|++..+ +.++.+++++|+...+.....+.+ +.....+.+||||||||++|+.+|+.|++++.++|..+++
T Consensus 136 ~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s---------~~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~ 205 (414)
T KOG2662|consen 136 LDSLDP-VIPYNEELQRRLPVELESRGNQLS---------SDGGSKDELPFEFRALEVALEAACSFLDSRLSELETEAYP 205 (414)
T ss_pred eccccc-cchHHHHHHHHhcccccccccccC---------CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 789999999999877643221111 1122268899999999999999999999999999999999
Q ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCCCCCCCccc
Q 016125 179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGS 258 (394)
Q Consensus 179 ~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
+||+|+.++++.+|++|+.+|++|+.|.++++.+||+|++||+||+||++||||+|+.+.+ .+.|.|..|...+
T Consensus 206 ~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~------~~~~~~~sp~~~~ 279 (414)
T KOG2662|consen 206 LLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQAS------SPESAPTSPTIKA 279 (414)
T ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhcc------ccccCCCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999975521 1567777777766
Q ss_pred ccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 016125 259 KISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSL 338 (394)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~ 338 (394)
..++++..+.......+++++|+|||||+||+|+|++.++++.+++||++|||++|++||++||++|+++++||++|+++
T Consensus 280 ~~~r~~~~~~~s~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~ 359 (414)
T KOG2662|consen 280 GISRAKSNRASSTVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCL 359 (414)
T ss_pred CccchhhcccchhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 65554322221122237999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016125 339 SIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 394 (394)
Q Consensus 339 ~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl~~ 394 (394)
+.+++|||+||||+++.+|+ .+|+|+|+++++.++|+++|+..++|+|+||++++
T Consensus 360 s~~~~va~ifGMNl~~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~~ 414 (414)
T KOG2662|consen 360 SVFSVVAGIFGMNLPSSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKRLLGL 414 (414)
T ss_pred HHHHHHHHHhcCCccchhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999 78999999999999999999999999999998864
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-35 Score=286.68 Aligned_cols=276 Identities=19% Similarity=0.253 Sum_probs=216.7
Q ss_pred eEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhhcCCCCCCeEEeeeCCeE--Ee------------eccceeeEeec
Q 016125 28 RSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAI--VL------------NLEHIKAIITS 93 (394)
Q Consensus 28 ~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~I--lv------------~le~i~~II~~ 93 (394)
..|+.++.....+. ..|.+.+|||+..++++... +++|+++..++.. ++ .+++++.|+++
T Consensus 33 ~~Widl~~p~~~e~-----~~l~~~~~l~~~~~ed~~~~-~~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~~ 106 (322)
T COG0598 33 FVWIDLVEPDDEEL-----EWLAKTFGLHPLALEDLLDA-EQRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVGK 106 (322)
T ss_pred eEEEECCCCCHHHH-----HHHHHhcCCCcchHHHHhCc-ccCCceEeeCCEEEEEEEeeccccccccccceeEEEEEeC
Confidence 67999977766554 35667899999999994443 7899999999752 22 26788999999
Q ss_pred CeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 94 EEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELE 173 (394)
Q Consensus 94 d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~le 173 (394)
+.+++++..+. +.++.++.|+...... ..+.+++ +..+++.+.+.+-..++.++
T Consensus 107 ~~liT~r~~~~---~~~~~vr~r~~~~~~~-----------------~~~~~~l------~~~lld~i~d~~~~~le~i~ 160 (322)
T COG0598 107 RRLITIRHRPL---PAFDRVRERLEKGTLL-----------------TRGADEL------LYALLDAIVDNYFPVLEQIE 160 (322)
T ss_pred CEEEEEecCCC---ccHHHHHHHHhccccc-----------------cCCHHHH------HHHHHHHHHHhhHHHHHHHH
Confidence 99999998543 5788999998775211 1223333 44444444444444555688
Q ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCCCCC
Q 016125 174 TAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPAS 253 (394)
Q Consensus 174 ~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~ 253 (394)
+..+.+.+.+..+..+..+++|..+++.+..+++.+.+.++++..+.+.+.+..
T Consensus 161 ~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~-------------------------- 214 (322)
T COG0598 161 DELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWL-------------------------- 214 (322)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccC--------------------------
Confidence 888888888888777788999999999999999999999999999987654310
Q ss_pred CCcccccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHH
Q 016125 254 PTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSS 333 (394)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi 333 (394)
.++....++.-..++..+.+.++.+++.++.+.+.+...+++++|++|| +||+
T Consensus 215 ------------------------~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk---~LTi 267 (322)
T COG0598 215 ------------------------SEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMK---ILTI 267 (322)
T ss_pred ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 1222233444455667788888889999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 334 GTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 334 ~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
+|++|+|+|+|||+|||||++|||.+|+||||++++++ +++++++++|||||||+
T Consensus 268 ~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m----~~~~~~~~~~frrk~Wl 322 (322)
T COG0598 268 VSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILM----LLLALLLYLYFRRKGWL 322 (322)
T ss_pred HHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHH----HHHHHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999854 55557899999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=2.7e-34 Score=281.45 Aligned_cols=283 Identities=20% Similarity=0.269 Sum_probs=216.4
Q ss_pred ccCCCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhh-cCCCCCCeEEeeeCCeEE-------------eeccce
Q 016125 22 KKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRIL-DPLLSYPSTILGREQAIV-------------LNLEHI 87 (394)
Q Consensus 22 ~~~~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~l-d~~~~~~~~I~~R~~~Il-------------v~le~i 87 (394)
....+...|+.+.+..+.+.. ..+.+.+|+|+.+++++ ++ +++|++...++... +..+++
T Consensus 21 ~~~~~~~~Widl~~p~~~e~~----~~l~~~~~l~~~~~ed~~~~--~~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l 94 (318)
T TIGR00383 21 SQELNTVLWIDLIEPTDEETL----AKLGQFFAIHPLALEDILNS--PQRPKVEEDEDHLFIISFFLNEDEDDTFETEQV 94 (318)
T ss_pred cCCCCceEEEEccCCCcHHHH----HHHHHHcCcCcchHHHhhCC--CCCCcEEEECCEEEEEEEeeeccCCCcceeEEE
Confidence 455677889998666555432 56788999999999984 54 56777877776532 244688
Q ss_pred eeEeecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 016125 88 KAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAA 167 (394)
Q Consensus 88 ~~II~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~ 167 (394)
..+++.+.++++...+. +.++.+++++....... ..-|.++ +..+++.+++.+..
T Consensus 95 ~~~l~~~~liTv~~~~~---~~~~~~~~~~~~~~~~~--------------------~~~~~~l--l~~il~~ivd~~~~ 149 (318)
T TIGR00383 95 SFILGKNLLFTIHEREL---PAFDSIRERIRTSQKVF--------------------EKGADYL--LYDIFDAIIDSYFP 149 (318)
T ss_pred EEEEECCEEEEEEcCCC---CcHHHHHHHHHhCchhh--------------------hCCHHHH--HHHHHHHHHhccHH
Confidence 99999999999987643 46777777775432110 0013333 66666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHhhhhcCCCCCCCCCC
Q 016125 168 RTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD-DMADLYLSRKMAGTSPVSGSGA 246 (394)
Q Consensus 168 ~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~-dm~~m~Lt~~~~~~~~~~~~~~ 246 (394)
.++.+++.+..+++.+.++..+..+.++..+|+++..+++.+.+.+++++.+.+.+. ..
T Consensus 150 ~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~-------------------- 209 (318)
T TIGR00383 150 LLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPI-------------------- 209 (318)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc--------------------
Confidence 777788888888888877666778999999999999999999999999999976432 10
Q ss_pred CCCCCCCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 016125 247 ANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQ 326 (394)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmk 326 (394)
..++....++.-..+++.+.+.++.+++.++.+.+.+....++++|++||
T Consensus 210 ------------------------------~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk 259 (318)
T TIGR00383 210 ------------------------------QTEEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMK 259 (318)
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111122333334567788888999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 327 LELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 327 l~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
+||++|++|+|+|+|||+|||||++|||.+|+|||+++++++ +++++++++||||||||
T Consensus 260 ---~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m----~~i~~~~~~~fkrk~Wl 318 (318)
T TIGR00383 260 ---ILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVM----AVIALGPLIYFRRKGWL 318 (318)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHH----HHHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999999999999988854 45557899999999997
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=1.5e-32 Score=269.88 Aligned_cols=271 Identities=12% Similarity=0.115 Sum_probs=196.1
Q ss_pred CceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhh-hcCCCCCCeEEeeeCCeEEee--------------ccceeeE
Q 016125 26 SSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIVLN--------------LEHIKAI 90 (394)
Q Consensus 26 ~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~-ld~~~~~~~~I~~R~~~Ilv~--------------le~i~~I 90 (394)
+...|+.++..-..+ +..|. +.+.++..+++ +... +++|++..+++.+.+. +.+++++
T Consensus 35 ~~~~Wi~l~~~~~~e-----~~~L~-~~~~~~~~~~d~l~~~-~~rpk~e~~~~~~~iil~~~~~~~~~~~~~~~~l~~~ 107 (324)
T PRK09546 35 AHPCWLHLDYTHPDS-----AQWLA-TTPLLPDNVRDALAGE-STRPRVSRLGEGTLITLRCINGNTDERPDQLVAMRVY 107 (324)
T ss_pred CCCEEEEeCCCChhH-----HHHHH-hcCCCCHHHHHHHhCC-CCCCcEEEECCEEEEEEEeccCCCCCChhheEEEEEE
Confidence 345799886433222 23343 44677777776 5432 5788999888764322 2348999
Q ss_pred eecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 016125 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (394)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~ 170 (394)
+++|+++++...+. ++++.+++++....+. . -|.++ +..+++.+++.+...++
T Consensus 108 l~~~~lITv~~~~~---~~~~~~~~~~~~~~~~------------------~----~~~~l--l~~lld~ivd~~~~~l~ 160 (324)
T PRK09546 108 ITDRLIVSTRHRKV---LALDDVVSDLQEGTGP------------------T----DCGGW--LVDVCDALTDHASEFIE 160 (324)
T ss_pred EeCCEEEEEecCCc---ccHHHHHHHHHhCCCC------------------C----CHHHH--HHHHHHHHHHHHHHHHH
Confidence 99999999986643 4778888887654321 0 13322 55666666666666667
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCC
Q 016125 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWF 250 (394)
Q Consensus 171 ~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~ 250 (394)
.+++.++.+++.+.++..+ .+++|..+|+.+.++++.+.|.++++.+|.+.+... ++
T Consensus 161 ~i~~~ld~lE~~l~~~~~~-~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~----~~------------------ 217 (324)
T PRK09546 161 ELHDKIIDLEDNLLDQQIP-PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPW----MS------------------ 217 (324)
T ss_pred HHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cC------------------
Confidence 7888877777777543222 467999999999999999999999999998643211 00
Q ss_pred CCCCCcccccccccccccccccCCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 016125 251 PASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQ----IDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQ 326 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~----vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmk 326 (394)
++ ...|+++ +..+.+.++.+++..+...+.+...++++.|++||
T Consensus 218 ----------------------------~~----~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~ 265 (324)
T PRK09546 218 ----------------------------DD----DRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTY 265 (324)
T ss_pred ----------------------------hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1234444 34455666777777778888888889999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 327 LELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 327 l~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
+||++|++|+|+|||||+|||||++|||.+|+||||+++++ |+++++++++||||||||
T Consensus 266 ---~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~i----m~~i~~~~~~~fkrk~Wl 324 (324)
T PRK09546 266 ---TMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLL----LVVLIGGVAWWLKRSKWL 324 (324)
T ss_pred ---HHHHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHH----HHHHHHHHHHHHHhcccC
Confidence 79999999999999999999999999999999999988875 455567899999999997
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.98 E-value=4.4e-30 Score=249.50 Aligned_cols=276 Identities=14% Similarity=0.177 Sum_probs=195.4
Q ss_pred ceEEEEEcCCCCeeEEEechhhhHHHhCCC---cchHhhhcCCCCCCeEEeeeCCeEEe-------------eccceeeE
Q 016125 27 SRSWILLDAAGNSTVLDVDKHAIMHRVQIH---ARDLRILDPLLSYPSTILGREQAIVL-------------NLEHIKAI 90 (394)
Q Consensus 27 ~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~---~RDlr~ld~~~~~~~~I~~R~~~Ilv-------------~le~i~~I 90 (394)
..-|+.+...-.. .+..+.+.+|++ ..|+..+..+ |++..+++++.+ ..+++..|
T Consensus 25 ~~vWiDl~~Pt~e-----E~~~v~~~~gl~~pt~~~~eeIe~s----sR~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fi 95 (316)
T PRK11085 25 DAVWIDLVEPDDD-----ERLRVQSELGQSLATRPELEDIEAS----ARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFT 95 (316)
T ss_pred CCEEEEcCCCCHH-----HHHHHHHHhCCCCCChhhHHHHhhC----ceEEEECCeEEEEEEEEecCCCCCccceeEEEE
Confidence 5778887544222 234567889999 7888877753 555555554322 34578999
Q ss_pred eecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 016125 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (394)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~ 170 (394)
++.|+++++...++ +.|..+++|+..+.. .. .++.++-+ .+||+++|.+++.+|....
T Consensus 96 l~~~~LvTvr~~~~---~~f~~~~~r~~~~~~-~~----------------~~~~~vl~--~Lld~iVd~~ad~lE~~~~ 153 (316)
T PRK11085 96 IRDGRLFTLREREL---PAFRLYRMRARSQTL-VD----------------GNAYELLL--DLFETKIEQLADEIENIYS 153 (316)
T ss_pred EECCEEEEEecCCc---chHHHHHHHHHhCCc-cc----------------CCHHHHHH--HHHHHHHHHhHHHHHHHHH
Confidence 99999999988765 467888888865421 00 11223333 4488888888888877666
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCC
Q 016125 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWF 250 (394)
Q Consensus 171 ~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~ 250 (394)
+++.....++..-....-.+.+++|.++++.+..++..+.++++++..+.+.. +.
T Consensus 154 ~ld~ls~~if~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~----------~~--------------- 208 (316)
T PRK11085 154 DLEKLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKA----------RL--------------- 208 (316)
T ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------cC---------------
Confidence 66665555542100001123445566666666666666666666666655310 00
Q ss_pred CCCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHH
Q 016125 251 PASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELF 330 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~ 330 (394)
.. +..+ .+..+++|++.+...++.+.+.+..+.|.+...+++++|++|| +
T Consensus 209 -----------------------~~---~~~~-~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk---~ 258 (316)
T PRK11085 209 -----------------------PG---GQLE-QAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIK---I 258 (316)
T ss_pred -----------------------Ch---hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---H
Confidence 00 0111 2467889999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 331 LSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 331 LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
||++|++|+|+|+|||+|||||++|||.+|+|||+++++++ +++++++++||||||||
T Consensus 259 lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~----~~~~~~~~~~f~rk~Wl 316 (316)
T PRK11085 259 FSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILM----ILAGLAPYLYFKRKNWL 316 (316)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHH----HHHHHHHHHHHHHcccC
Confidence 99999999999999999999999999999999999888854 44446899999999997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.97 E-value=6.2e-29 Score=239.42 Aligned_cols=275 Identities=22% Similarity=0.309 Sum_probs=210.2
Q ss_pred CceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhh-hcCCCCCCeEEeeeCCeEEeecc--------------ceeeE
Q 016125 26 SSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIVLNLE--------------HIKAI 90 (394)
Q Consensus 26 ~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~-ld~~~~~~~~I~~R~~~Ilv~le--------------~i~~I 90 (394)
+...|+.+.+..+.+ ...|.+++|+|+..+++ +++ ..+|++...++++.+.+. ++..+
T Consensus 2 ~~~~Wi~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 74 (292)
T PF01544_consen 2 DGFVWIDLSGPDDEE-----LEWLAEEFGLHPLTIEDALDP--EERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFI 74 (292)
T ss_dssp SS-EEEEEETTTCHH-----HHHHHHTTTS-HHHHHHHCCT--SSSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEE
T ss_pred CccEEEEEeCCCHHH-----HHHHHHHhCcCHhHHHHHhCC--CcCCEEEEECCeEEEEEEEcchhhcccccccceEEEE
Confidence 457899998877762 25677889999999997 554 578889988887533221 57899
Q ss_pred eecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 016125 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (394)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~ 170 (394)
++.+.+++++..+. ++++.+.+++..... ...-|+. ++..+++.+++.+...++
T Consensus 75 ~~~~~lit~~~~~~---~~~~~~~~~~~~~~~---------------------~~~~~~~--ll~~il~~~~~~~~~~l~ 128 (292)
T PF01544_consen 75 LGDNFLITVHRDPL---PFIDELRERLESRNE---------------------RPSSPED--LLYAILDEIVDDYFEVLE 128 (292)
T ss_dssp EETTEEEEEESSSS---HCHHHHHHHHHSTTC---------------------SCSSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred EecceEEEEECCCC---hHHHHHHHHhhccCC---------------------CCCCHHH--HHHHHHHHHHHHHHHHHH
Confidence 99999999998753 567888888861111 1223554 488888888888888888
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHhhhhcCCCCCCCCCCCCC
Q 016125 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD-DDDDMADLYLSRKMAGTSPVSGSGAANW 249 (394)
Q Consensus 171 ~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~-~d~dm~~m~Lt~~~~~~~~~~~~~~~~~ 249 (394)
.+++.+..+.+.+.+...+..+.++..+|+.+..+++.+.+.++++.++++ .+...
T Consensus 129 ~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~----------------------- 185 (292)
T PF01544_consen 129 ELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPF----------------------- 185 (292)
T ss_dssp HHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTT-----------------------
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh-----------------------
Confidence 999999888888877777788899999999999999999999999988776 21110
Q ss_pred CCCCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhH
Q 016125 250 FPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLEL 329 (394)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l 329 (394)
..++....++....++..+.+.++.+++.++.+.+.+...++.++|++||
T Consensus 186 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~--- 235 (292)
T PF01544_consen 186 ---------------------------ISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMK--- 235 (292)
T ss_dssp ---------------------------SHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH---
T ss_pred ---------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 01111223566667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARF 388 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frr 388 (394)
+||++|++|+|+|||||+|||||.++|+.+|+|||++++++ ++|+++++++++||||
T Consensus 236 ~LT~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~--~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 236 VLTIVTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFVIIL--GLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH--H--HHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccCCCccCCccHHHHHHHH--HHHHHHHHHHHHheeC
Confidence 79999999999999999999999999999899988777432 2456667788888876
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=94.47 E-value=5.5 Score=39.23 Aligned_cols=180 Identities=12% Similarity=0.015 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Q 016125 149 FEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMAD 228 (394)
Q Consensus 149 fel~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~ 228 (394)
....+|-.+++.+++.+-+.++.++..++.+...+..+..+..+ ..+-+++..+++.+.++|+++..+.+-
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~~~~~---~~~l~~i~~l~~~~~~~r~~l~~~~r~------ 198 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQGDEY---DEALSTLAELEDIGWKVRLCLMDTQRA------ 198 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34588899999999999999999988877776666544222333 444488999999999999988655431
Q ss_pred HHHhhhhcCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016125 229 LYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDD 308 (394)
Q Consensus 229 m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~ 308 (394)
++.- ... ... -.....++..+.+.++.+.++.+.
T Consensus 199 --l~~l---------------------------------------~~~--~~~---~~~~~~~~~~~~~Di~~l~~~~~~ 232 (316)
T PRK11085 199 --LNFL---------------------------------------VRK--ARL---PGGQLEQAREILRDIESLLPHNES 232 (316)
T ss_pred --HHHH---------------------------------------hhc--ccC---ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 0100 000 111 111113456667777777777777
Q ss_pred HHHHHHHHHH----HHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCcc-ccCcchhHHHHHHHHHHHHHHHHHHH
Q 016125 309 TEDYINIQLD----NHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWN-ENHGYMFKWVVIFTAIFCAVTFVFIM 383 (394)
Q Consensus 309 te~~i~~~Ld----~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~~~pE-~~~~~gF~~v~~~~~~~~~~l~~~~~ 383 (394)
..+.++..+| ..-|+.++ ++-++|++-+++...+=+.|+ ++.. ..-| +..|-.+. .++++++.+..+
T Consensus 233 ~~~~~~~l~d~~~~~i~~~~N~---~mk~lTv~s~if~pptliagi---yGMNf~~mP-~~~~~~g~-~~~l~~~~~~~~ 304 (316)
T PRK11085 233 LFQKVNFLMQAAMGFINIEQNR---IIKIFSVVSVVFLPPTLVASS---YGMNFEFMP-ELKWSFGY-PGAIILMILAGL 304 (316)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHhh---cccccCCCC-CCCCcHHH-HHHHHHHHHHHH
Confidence 7666665555 45666666 999999999999999999998 2322 2235 33344442 235566666666
Q ss_pred HHHHHhCC
Q 016125 384 SYARFKGL 391 (394)
Q Consensus 384 ~~frrk~w 391 (394)
..+.+-||
T Consensus 305 ~~~~~f~r 312 (316)
T PRK11085 305 APYLYFKR 312 (316)
T ss_pred HHHHHHHH
Confidence 67766554
No 8
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=93.84 E-value=7.3 Score=38.32 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 016125 279 EELEMLLEAYFMQI-DSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWN 357 (394)
Q Consensus 279 ~elE~LLE~y~~~v-d~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~~~pE 357 (394)
+....-...|++++ +++.+.++.+..+.+.+..+.+.+++...|+.++ ++-++|.+-++++-.|=+.|- ++..
T Consensus 212 ~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~---imk~LTi~s~iflPpTlIagi---yGMN 285 (322)
T COG0598 212 DWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNE---IMKILTIVSTIFLPPTLITGF---YGMN 285 (322)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHcc---cccC
Confidence 34556677788887 8888888888888888888999999999999988 999999999999999999986 2332
Q ss_pred cc-Cc-chhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 358 EN-HG-YMFKWVVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 358 ~~-~~-~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
-. -| ..+.+... ++++++.+..++.+.+-|.
T Consensus 286 f~~mPel~~~~Gy~---~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 286 FKGMPELDWPYGYP---IALILMLLLALLLYLYFRR 318 (322)
T ss_pred CCCCcCCCCcccHH---HHHHHHHHHHHHHHHHHHh
Confidence 21 24 33333222 2577777777777776554
No 9
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=93.46 E-value=7.4 Score=39.44 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhHH-----HHHHHHH---HHHhHHHHHH-hHHHHHHHHHHHHHHHHHhhcccCCCCCccccCcc
Q 016125 292 IDSTLNKLSTLREYIDDTE-----DYINIQL---DNHRNQLIQL-ELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGY 362 (394)
Q Consensus 292 vd~~~~~l~~l~e~i~~te-----~~i~~~L---d~~rN~lmkl-~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~ 362 (394)
..++.+.++.+...|.-.| ..+.... ...|--+.++ +++||++++++...+.++++ . .|...+++
T Consensus 300 aRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~vlLv~vSt~~~~-----~-~Pl~~tR~ 373 (395)
T PF10267_consen 300 ARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLLTVLLVFVSTVANC-----P-LPLTRTRL 373 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C-cHHhhccH
Confidence 3444555555555555555 1211111 2244445554 77888888888777777654 2 44454663
No 10
>PRK09546 zntB zinc transporter; Reviewed
Probab=93.39 E-value=5.9 Score=38.91 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 016125 330 FLSSGTVSLSIYSLVAGIFGM 350 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGM 350 (394)
++-++|++-+.+.-.+=+-|.
T Consensus 263 ~m~~Ltilt~IflPlT~IaGi 283 (324)
T PRK09546 263 RTYTMSLMAMVFLPTTFLTGL 283 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444433444444
No 11
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=90.08 E-value=5.4 Score=37.88 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhh--cccCCCCCccccCcc
Q 016125 285 LEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGI--FGMNIPYTWNENHGY 362 (394)
Q Consensus 285 LE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGi--fGMN~~~~pE~~~~~ 362 (394)
++...+.++.+.+.++.+.+...+. ++..++.....+ . ++|++-+-++..|-+.|+ .||.....+.. +.+
T Consensus 201 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~n~~m~~L-T---~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g-~~~ 272 (292)
T PF01544_consen 201 IERLLERAESLRERLESLQDLYQSK---LSNRQNRVMKVL-T---IVTAIFLPLTFITGIFGMNFKGMPELDWPYG-YFF 272 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHHH-H---HHHHHHHHHHHHTTSTTS-SS---SSSSSS--SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhhCCccCCCccCCccH-HHH
Confidence 3444556666666666666555554 555655555544 4 367777877777777776 55886555544 555
Q ss_pred h
Q 016125 363 M 363 (394)
Q Consensus 363 g 363 (394)
.
T Consensus 273 ~ 273 (292)
T PF01544_consen 273 V 273 (292)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=89.43 E-value=4.3 Score=33.67 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCC
Q 016125 301 TLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIP 353 (394)
Q Consensus 301 ~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~ 353 (394)
.+.+.+++--++....+..+..+..+ ...+.++..++...+++...++..+-
T Consensus 11 ~~~~lv~~~i~La~~E~~~~~~~~~~-~~~~~~~a~vl~~~~l~~l~~al~~~ 62 (121)
T PF07332_consen 11 DLSTLVRTRIELAKAELREKARRLGR-GLALLVLAAVLALLALLFLLVALVFA 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555544 33455555566666666655555543
No 13
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=87.41 E-value=4.9 Score=30.24 Aligned_cols=19 Identities=16% Similarity=0.030 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q 016125 373 IFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 373 ~~~~~l~~~~~~~frrk~w 391 (394)
++.+.+..+.+.|++++||
T Consensus 55 ~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 55 LGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3445556678889999988
No 14
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=87.34 E-value=25 Score=32.72 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 016125 330 FLSSGTVSLSIYSLVA 345 (394)
Q Consensus 330 ~LTi~s~i~~~~T~Ia 345 (394)
-++++-++|+.+++|.
T Consensus 153 gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 153 GIGAMLFVFMLFALVM 168 (230)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5666666666666655
No 15
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=75.95 E-value=7.4 Score=34.43 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
+.+.+.++++.+++...+|| .| +..-|+|=++|.+ ++++++++++..+|.+-|+
T Consensus 23 v~~lai~sl~~s~llI~lFg-----~~---~~~nf~~NllGVi-l~~~~~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 23 VASLAILSLAFSQLLIALFG-----GE---SGGNFHWNLLGVI-LGLLLTSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHcC-----CC---CCCceeeeHHHHH-HHHHHHHHHHHHHccChHH
Confidence 34444455566788889999 21 2222666555433 4455556666688887775
No 16
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=75.49 E-value=7.2 Score=31.67 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCc
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTW 356 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~p 356 (394)
.++++...++.++++..+.|.=++.-.
T Consensus 44 ~~g~IG~~~v~pil~G~~lG~WLD~~~ 70 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVGIWLDRHY 70 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 588899999999999999999776443
No 17
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=73.29 E-value=1.6e+02 Score=32.90 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcccCCCCCccc
Q 016125 337 SLSIYSLVAGIFGMNIPYTWNE 358 (394)
Q Consensus 337 i~~~~T~IaGifGMN~~~~pE~ 358 (394)
++...+++-|++|-.=.-.|-.
T Consensus 429 ~~~~lGLl~G~~G~~~~~~p~~ 450 (806)
T PF05478_consen 429 LCLLLGLLCGCCGYRRRADPTD 450 (806)
T ss_pred HHHHHHHHHhhccCCCCCCCcc
Confidence 4455788999999765555443
No 18
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=73.15 E-value=93 Score=30.12 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=46.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 016125 285 LEAYFMQI-DSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGM 350 (394)
Q Consensus 285 LE~y~~~v-d~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGM 350 (394)
...|++++ +++.+..+.+..+.+.++.+.+.+++..-|++++ .+-.+|++-++++-.+=+-|.
T Consensus 214 ~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~---~mk~LTvvt~IflP~t~IaGi 277 (318)
T TIGR00383 214 VREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNE---IMKILTVVSTIFIPLTFIAGI 277 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45566665 5566666666666666666777777777787777 888888888888888888887
No 19
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=69.29 E-value=6.7 Score=32.99 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=32.2
Q ss_pred HHHHHhhcccCCCCCcc-------ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 341 YSLVAGIFGMNIPYTWN-------ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 341 ~T~IaGifGMN~~~~pE-------~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
..+.=+...+|=...+- ....+.|++++.++++.++.++.+|+.|.|-||.
T Consensus 14 ~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK~ 71 (129)
T PF02060_consen 14 SKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKKR 71 (129)
T ss_dssp HHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666666322221 1234567788887788888999999999998874
No 20
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.06 E-value=28 Score=28.42 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 172 LETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (394)
Q Consensus 172 le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~l 219 (394)
.+.....++.++..-++.+. ++.++-++.++++.++.+...+..+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~d---v~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDD---VHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444455443 4555556666665555555555444
No 21
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=67.09 E-value=16 Score=35.19 Aligned_cols=14 Identities=14% Similarity=0.525 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCCch
Q 016125 212 VRDELEQLLDDDDD 225 (394)
Q Consensus 212 ~re~l~~ll~~d~d 225 (394)
+-+-++.+..++.+
T Consensus 112 l~e~~~~~fg~e~~ 125 (295)
T TIGR01478 112 LLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHhCCccc
Confidence 45667777788877
No 22
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=63.95 E-value=7.4 Score=36.93 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHh-hcccCCCCCccc---cC--cchhHHHHHHH
Q 016125 332 SSGTVSLSIYSLVAG-IFGMNIPYTWNE---NH--GYMFKWVVIFT 371 (394)
Q Consensus 332 Ti~s~i~~~~T~IaG-ifGMN~~~~pE~---~~--~~gF~~v~~~~ 371 (394)
+=++.-++|++.-.- |+|||+.+.+-. +| .|+||.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (249)
T PRK15348 185 QPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLT 230 (249)
T ss_pred cCCccccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 334444455443333 899999877654 22 25555555543
No 23
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=62.11 E-value=1.8e+02 Score=29.33 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCccc
Q 016125 328 ELFLSSGTVSLSIYSLVAGIFGMNIPYTWNE 358 (394)
Q Consensus 328 ~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~ 358 (394)
+++|+.+++++-.-+-|+ |+..|+-.
T Consensus 394 NiiLalm~VlLvfVSTIa-----~~v~PLmk 419 (455)
T KOG3850|consen 394 NIILALMTVLLVFVSTIA-----NCVSPLMK 419 (455)
T ss_pred HHHHHHHHHHHHHHHHHH-----hhccHHhh
Confidence 345555555554444444 56666544
No 24
>PTZ00370 STEVOR; Provisional
Probab=57.95 E-value=33 Score=33.15 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCch
Q 016125 212 VRDELEQLLDDDDD 225 (394)
Q Consensus 212 ~re~l~~ll~~d~d 225 (394)
+-+-++++..++.+
T Consensus 111 l~e~~ee~fg~~~~ 124 (296)
T PTZ00370 111 LLETYEEMFGDESD 124 (296)
T ss_pred HHHHHHHHhcCccc
Confidence 45677888888888
No 25
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=57.83 E-value=25 Score=30.60 Aligned_cols=65 Identities=12% Similarity=0.318 Sum_probs=40.9
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016125 320 HRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFK 389 (394)
Q Consensus 320 ~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk 389 (394)
+-+++++ +-+++|+.++...++.|++=+++. +... +-..++|...+..-....+..+.+.+.++|
T Consensus 61 ~~~k~l~---kt~~iSF~~avLGiifgI~~qll~-~Wsl-siM~wYWll~LlLyl~tiisLViLVf~n~k 125 (161)
T PF13042_consen 61 KFSKVLI---KTNVISFNFAVLGIIFGIIHQLLG-KWSL-SIMMWYWLLILLLYLITIISLVILVFVNRK 125 (161)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh-hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4444544 789999999999999999988864 2222 344566666544433344444455555544
No 26
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=57.74 E-value=46 Score=28.68 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhcccCC
Q 016125 336 VSLSIYSLVAGIFGMNI 352 (394)
Q Consensus 336 ~i~~~~T~IaGifGMN~ 352 (394)
+++.++-.+||+||.|=
T Consensus 83 LlivIgivvaGvygi~k 99 (169)
T COG5130 83 LLIVIGIVVAGVYGIRK 99 (169)
T ss_pred HHHHHhhhhheeeehhh
Confidence 45667888999999993
No 27
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=56.38 E-value=18 Score=30.50 Aligned_cols=25 Identities=8% Similarity=-0.144 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016125 364 FKWVVIFTAIFCAVTFVFIMSYARFK 389 (394)
Q Consensus 364 F~~v~~~~~~~~~~l~~~~~~~frrk 389 (394)
.+++++ .|++.+++.++++|++||+
T Consensus 67 ~~Ii~g-v~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFG-VMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred eehhHH-HHHHHHHHHHHHHHHHHHH
Confidence 333333 3434344444334444443
No 28
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=55.78 E-value=18 Score=36.15 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCC
Q 016125 310 EDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIP 353 (394)
Q Consensus 310 e~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~ 353 (394)
++++...|++.....+.--++-|++++.+-+.-..+=+.||++-
T Consensus 18 ~~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~~ 61 (358)
T PF10272_consen 18 QNLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCFF 61 (358)
T ss_pred HHHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeEe
Confidence 33455666665555555556666666666655555557788863
No 29
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=54.13 E-value=2e+02 Score=27.35 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 016125 154 LEVALEAICSFLAARTTELETAAYPALDELTSK---IS---SRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDM 226 (394)
Q Consensus 154 LE~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~---~~---~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm 226 (394)
+|+-|+.-...++.+.++++.....+--++... .. ...-+.+-.|++.+...+..-..+|+-+.+|-.-.+|+
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 566666666666666666666554432222211 00 11123455677777777777777777777776555544
No 30
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=52.81 E-value=91 Score=24.81 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 016125 307 DDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLV 344 (394)
Q Consensus 307 ~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~I 344 (394)
.+.++.+.-+.+.+||.+++ .+=++.+.++..+++
T Consensus 2 ~~~~~~~~~Y~~~H~~~~n~---~lH~igvp~~~~~~~ 36 (95)
T PF06127_consen 2 KSLEEFFAFYLSYHRNPINR---ALHFIGVPLIIFSLL 36 (95)
T ss_pred cCHHHHHHHHHHHcCCHhhH---HHHHHHHHHHHHHHH
Confidence 35677778888888888777 344444333333333
No 31
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=52.79 E-value=77 Score=28.44 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016125 162 CSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (394)
Q Consensus 162 ~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~ 221 (394)
+-.+|.+++.|+....+..|.+. ..++.-..++++++.++.++..+-+-+.++|+
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~-----~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELE-----AQQEQAPALKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhCchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655555554 23444455666677777766666666555553
No 32
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=52.47 E-value=1.4e+02 Score=25.14 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-H---HHHHHH--HHhHHHHHHhHHHHHHHHHHHHHHH----HHhhcccC
Q 016125 282 EMLLEAYFMQIDSTLNKLSTLREYIDDTED-Y---INIQLD--NHRNQLIQLELFLSSGTVSLSIYSL----VAGIFGMN 351 (394)
Q Consensus 282 E~LLE~y~~~vd~~~~~l~~l~e~i~~te~-~---i~~~Ld--~~rN~lmkl~l~LTi~s~i~~~~T~----IaGifGMN 351 (394)
-.++-.|-.+...+.+++..+.+..++..+ . ..-+++ .+|=++++-.+.+.+.|+++...+. +.+++++|
T Consensus 13 g~ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~ 92 (130)
T PF11026_consen 13 GLLLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSID 92 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 345667777777777777777777654211 1 133343 4666677766667666666555444 34455444
Q ss_pred C
Q 016125 352 I 352 (394)
Q Consensus 352 ~ 352 (394)
+
T Consensus 93 ~ 93 (130)
T PF11026_consen 93 L 93 (130)
T ss_pred h
Confidence 3
No 33
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=51.42 E-value=52 Score=30.96 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=11.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 016125 321 RNQLIQLELFLSSGTVSLSIYSLVAGIFG 349 (394)
Q Consensus 321 rN~lmkl~l~LTi~s~i~~~~T~IaGifG 349 (394)
++++++.-+.+.+.+++=+...++.|.++
T Consensus 5 k~~~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 5 KKRILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566643333333333333333333344
No 34
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=51.34 E-value=16 Score=30.38 Aligned_cols=20 Identities=10% Similarity=0.305 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 016125 329 LFLSSGTVSLSIYSLVAGIF 348 (394)
Q Consensus 329 l~LTi~s~i~~~~T~IaGif 348 (394)
+.+.++|.++...|+|.|++
T Consensus 32 liiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 32 LIIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred eehHHHHHHHHHHHHhheEE
Confidence 47888888888888887765
No 35
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=51.28 E-value=34 Score=35.78 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=51.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHH--HHhHHHHHHhHHHHHHHHHHHHHHHHHhhcc--
Q 016125 275 ENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDY-INIQLD--NHRNQLIQLELFLSSGTVSLSIYSLVAGIFG-- 349 (394)
Q Consensus 275 ~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~-i~~~Ld--~~rN~lmkl~l~LTi~s~i~~~~T~IaGifG-- 349 (394)
++-...+|+.|.+.+.+.+.+-..-..|+.+++..+.. -+..+- ..||+-- .-.+.+|+..++||.-.||
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk-----~Rkvvaimv~maFi~f~~~~p 375 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKK-----KRKVVAIMVVMAFIIFNYGSP 375 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCccccccc-----chhhhhHHHHHHHHHHhccCc
Confidence 45567788888888888888888878888777665331 001111 2334321 2345566667788888899
Q ss_pred cCCCCCccc
Q 016125 350 MNIPYTWNE 358 (394)
Q Consensus 350 MN~~~~pE~ 358 (394)
||+.+.++-
T Consensus 376 ~ni~nnln~ 384 (655)
T KOG4343|consen 376 MNILNNLNI 384 (655)
T ss_pred ccccCCccc
Confidence 999888765
No 36
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=51.18 E-value=22 Score=31.84 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 016125 330 FLSSGTVSLSIYSLVAGIFG 349 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifG 349 (394)
+++++.++++..-+++|+-|
T Consensus 6 i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666
No 37
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.48 E-value=40 Score=27.75 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcc-ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016125 333 SGTVSLSIYSLVAGIFGMNIPYTWN-ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFK 389 (394)
Q Consensus 333 i~s~i~~~~T~IaGifGMN~~~~pE-~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk 389 (394)
.++++.....++++..+.|.-..+. .-+||-|. +.-++++|.+++.+.+....-+
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFi--lLnl~lS~~Aa~~ap~IlmsQN 58 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFI--LLNLVLSLEAAYQAPLILMSQN 58 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCCCCccHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888899999999999865443 12465553 3334556777777776665443
No 38
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=49.08 E-value=4.2e+02 Score=29.60 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=9.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 016125 360 HGYMFKWVVIFTAIFCAVTFVF 381 (394)
Q Consensus 360 ~~~gF~~v~~~~~~~~~~l~~~ 381 (394)
..|++++..++.+++|+++.+.
T Consensus 407 ~~y~~yR~~~~lil~~~llLIv 428 (806)
T PF05478_consen 407 EKYDSYRWIVGLILCCVLLLIV 428 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555544444344444444333
No 39
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.71 E-value=2e+02 Score=25.62 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=15.1
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 016125 313 INIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIF 348 (394)
Q Consensus 313 i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGif 348 (394)
+...+.+.+++++| . ++.++++.++++.|+|
T Consensus 143 lr~~iE~~K~~~lr---~--~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 143 LRTEIESLKWDTLR---W--LVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHH
Confidence 33444556666666 2 1233344445555543
No 40
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=46.97 E-value=1.3e+02 Score=23.24 Aligned_cols=26 Identities=8% Similarity=-0.069 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYT 355 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~ 355 (394)
..|++.+++-..--..+.||..-..+
T Consensus 8 ~~tl~l~l~yf~~W~~~ay~~~~~~~ 33 (80)
T PF06196_consen 8 RWTLGLTLIYFAWWYGFAYGLGNGDG 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 45666666666666778888875433
No 41
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=46.57 E-value=1.6e+02 Score=25.20 Aligned_cols=9 Identities=22% Similarity=0.113 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 016125 330 FLSSGTVSL 338 (394)
Q Consensus 330 ~LTi~s~i~ 338 (394)
.+|++++.+
T Consensus 86 lvsv~~~~~ 94 (142)
T PF11712_consen 86 LVSVFAVFF 94 (142)
T ss_pred HHHHHHHHH
Confidence 344444433
No 42
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=45.25 E-value=42 Score=25.45 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=17.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 359 NHGYMFKWVVIFTAIFCAVTFVFIMSYAR 387 (394)
Q Consensus 359 ~~~~gF~~v~~~~~~~~~~l~~~~~~~fr 387 (394)
++||+|...+++++.-..++++.+-|++.
T Consensus 17 kdP~~Fl~~vll~LtPlfiisa~lSwkLa 45 (74)
T PF15086_consen 17 KDPYEFLTTVLLILTPLFIISAVLSWKLA 45 (74)
T ss_pred cChHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 47999987776554444455555555543
No 43
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=45.20 E-value=14 Score=28.32 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFK--GLVGS 394 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk--~wl~~ 394 (394)
.++.+-.++++.+|+.|++==|+.++ ++...+ ++++++++++=-+-+++|. +|+++
T Consensus 12 l~~~il~~~~iisfi~Gy~~q~~~~~--------~~~~~~-g~~~~~lv~vP~Wp~y~r~p~~W~~~ 69 (76)
T PF06645_consen 12 LMQYILIISAIISFIVGYITQSFSYT--------FYIYGA-GVVLTLLVVVPPWPFYNRHPLKWLPP 69 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-HHHHHHhheeCCcHhhcCCcccCCCC
Confidence 45566666777788888875554333 322222 2334444445555666665 56653
No 44
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=45.16 E-value=41 Score=26.79 Aligned_cols=27 Identities=19% Similarity=-0.116 Sum_probs=16.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcccCCC
Q 016125 327 LELFLSSGTVSLSIYSLVAGIFGMNIP 353 (394)
Q Consensus 327 l~l~LTi~s~i~~~~T~IaGifGMN~~ 353 (394)
.|.+|+++..++.....+.+++...+.
T Consensus 4 ~E~iL~~Ig~il~il~~~~~l~~~~~~ 30 (100)
T PF13273_consen 4 AEKILGWIGGILGILFGFFGLLIGFFG 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888877766555555544443
No 45
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=44.81 E-value=1.2e+02 Score=32.01 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCC
Q 016125 277 DVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNI 352 (394)
Q Consensus 277 ~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~ 352 (394)
..+.+|..|..|..++..+-..+..|++.-.. ++..|.+++.-.-+ .=.++.-+..||.+|-.|-.=++
T Consensus 29 ~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~----l~~~L~Nrk~~~~~---L~~~i~~i~ipP~lI~~I~~~~v 97 (508)
T PF04129_consen 29 ILESLEEMLSNFQNDLGSISSEIRSLQERSSS----LNVKLKNRKAVEEK---LSPFIDDIVIPPDLIRSICEGPV 97 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHH---HHHHHHHHcCCHHHHHhHhcCCC
Confidence 45667777888888888888888888765544 67788888887777 46677778899999999876544
No 46
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=44.17 E-value=29 Score=26.01 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016125 331 LSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 390 (394)
Q Consensus 331 LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 390 (394)
-|-+|=..+.+++..++++.==...| .+|++.-++++. +..++....=+|||+|+
T Consensus 5 ~tg~aYgtSag~~~~wl~~lld~~sp---~qW~aIGvi~gi--~~~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 5 TTGAAYGTSAGSAGYWLLQLLDQFSP---SQWAAIGVIGGI--FFGLLTYLTNLYFKIKE 59 (68)
T ss_pred hhhhccccchhhHHHHHHHHHhccCc---ccchhHHHHHHH--HHHHHHHHhHhhhhhhH
Confidence 33344444445555555554222333 344454444432 23344456678888874
No 47
>PRK02935 hypothetical protein; Provisional
Probab=43.21 E-value=1.9e+02 Score=23.77 Aligned_cols=17 Identities=6% Similarity=-0.074 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016125 371 TAIFCAVTFVFIMSYAR 387 (394)
Q Consensus 371 ~~~~~~~l~~~~~~~fr 387 (394)
++++.+.+.+....|||
T Consensus 44 m~~G~l~~l~S~vvYFw 60 (110)
T PRK02935 44 MLLGFLAVIASTVVYFW 60 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444445566665
No 48
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=42.53 E-value=1.3e+02 Score=26.86 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 192 LDRVRKLKSAMTRLTARVQKVRDELEQL 219 (394)
Q Consensus 192 L~~L~~lk~~L~~l~~~v~~~re~l~~l 219 (394)
--+|.++|+++-++..+++.+-..+.++
T Consensus 117 sYqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 117 SYQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999988877774
No 49
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=41.51 E-value=1.7e+02 Score=24.77 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 158 LEAICSFLAARTTELETAAYPALDELTS--KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (394)
Q Consensus 158 L~~~~~~Le~~~~~le~~~~~~ld~L~~--~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~l 219 (394)
|+.+.+.|...=+.|...+..+-+.+.+ .+....-+.+..++..+..++..+..++.++..|
T Consensus 52 l~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 50
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=39.94 E-value=48 Score=36.45 Aligned_cols=96 Identities=16% Similarity=0.247 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhH-------------------HHHHHHHHHHHHHHHHhhcccC
Q 016125 291 QIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLEL-------------------FLSSGTVSLSIYSLVAGIFGMN 351 (394)
Q Consensus 291 ~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l-------------------~LTi~s~i~~~~T~IaGifGMN 351 (394)
++-+++..+..++-.+.+|.|-|.-++.-..-+++|+++ .=++++++-.+|.|+.|.+|==
T Consensus 861 hLvgiIaklk~i~IevTStwEsIKdQierakaeLLRLDlHEGD~p~WikqL~~At~DvWPaaA~~~~~iGnfL~~ta~gi 940 (981)
T PF03408_consen 861 HLVGIIAKLKGIQIEVTSTWESIKDQIERAKAELLRLDLHEGDYPAWIKQLASATKDVWPAAASFLSGIGNFLSGTAGGI 940 (981)
T ss_pred hHHHHHHHhcCcEEEEeehHhhHHHHHHHHHHHHheeecccCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 456677777777777777777777777666666666653 3467777788888888666644
Q ss_pred CCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016125 352 IPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVG 393 (394)
Q Consensus 352 ~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl~ 393 (394)
|..-... -.|+=++++| +++.+.+++.||--+||+
T Consensus 941 FGtafs~-LgY~KPiliG------i~ii~liili~kIisWlp 975 (981)
T PF03408_consen 941 FGTAFSI-LGYAKPILIG------IVIILLIILIFKIISWLP 975 (981)
T ss_pred cchHHHH-HhhhhhHHHH------HHHHHHHHHHHHHHHhcc
Confidence 4332222 2333444554 333345667778888875
No 51
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=37.97 E-value=53 Score=28.94 Aligned_cols=39 Identities=21% Similarity=0.473 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCchhHHH
Q 016125 191 NLDRVRKLKSAMTRLTARVQK---VRDELEQLLDDDDDMADL 229 (394)
Q Consensus 191 ~L~~L~~lk~~L~~l~~~v~~---~re~l~~ll~~d~dm~~m 229 (394)
.|.+|..+|++|..|++.+.. +|+.|++++.+.+.+..+
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l 151 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKL 151 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHH
Confidence 367788889999999888755 889999999887766543
No 52
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=37.38 E-value=54 Score=26.41 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=20.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 360 HGYMFKWVVIFTAIFCAVTFVFIMSYARF 388 (394)
Q Consensus 360 ~~~gF~~v~~~~~~~~~~l~~~~~~~frr 388 (394)
-||-.+.++..++++++.++++++++.|+
T Consensus 16 ~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36666666666777788888888887754
No 53
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=37.21 E-value=1.5e+02 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 016125 327 LELFLSSGTVSLSIYSLVAGIFGMNIPY 354 (394)
Q Consensus 327 l~l~LTi~s~i~~~~T~IaGifGMN~~~ 354 (394)
++..||+.+=+.-..-++.|+.+| +.+
T Consensus 17 iD~~lT~~aW~gfi~l~~~~~~~~-~~~ 43 (153)
T PRK14584 17 IDIILTALAWFGFLFLLVRGLLEM-ISR 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 456788888777778888999998 543
No 54
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=36.97 E-value=2.1e+02 Score=22.53 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=29.8
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcc---cCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016125 318 DNHRNQLIQLELFLSSGTVSLSIYSLVAGIFG---MNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 390 (394)
Q Consensus 318 d~~rN~lmkl~l~LTi~s~i~~~~T~IaGifG---MN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 390 (394)
-.+|+++.- .++++.+++-.+-.+..-|- |+-+..+.. -++|+++.++.. ++.++..++|.++-+
T Consensus 11 ~r~r~r~~~---~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~-~t~g~~~g~~~~----~~~~~l~~~Yv~~An 78 (91)
T PF04341_consen 11 VRRRRRLAW---PLSAIFLVLYFGFVLLSAFAPELMATPVFPGS-LTLGIVLGLGQI----VFAWVLTWLYVRRAN 78 (91)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHCHHHHcCcccCCC-cCHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 345555444 45544444433333333332 333333222 566665555432 233356677777644
No 55
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=36.76 E-value=92 Score=22.99 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccCcchh
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMF 364 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF 364 (394)
+++.+++..+.+.+.+.+-||=|+...+- +||.
T Consensus 9 vlAtiavFiaLagl~~~I~GlLfD~~~~~--~yg~ 41 (62)
T PF11177_consen 9 VLATIAVFIALAGLAAVIHGLLFDEERVF--RYGV 41 (62)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccchh--HHHH
Confidence 67888888888999999999988755433 4444
No 56
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=36.58 E-value=5.5e+02 Score=27.36 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhHHHHHH-hHHHHHHHH
Q 016125 282 EMLLEAYFMQIDSTLNKLSTLREYIDDTEDYIN-IQLDNHRNQLIQL-ELFLSSGTV 336 (394)
Q Consensus 282 E~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~-~~Ld~~rN~lmkl-~l~LTi~s~ 336 (394)
+.+++.+......+-...+.....+.++-+.+. -.++..+-.+.-+ ++.++-+..
T Consensus 392 ~~ll~~~~~~~s~l~~~f~~w~~~i~~tf~~i~~~~l~~t~~ki~~~~~~~~~~~~~ 448 (544)
T PF04163_consen 392 NQLLQEWTMMTSNLNSDFALWNREIFSTFESISMKKLNITKDKIDDLGSLSISFIHI 448 (544)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444445556666666666666655555 5555444444444 344444444
No 57
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.58 E-value=1.1e+02 Score=27.85 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=7.5
Q ss_pred hhHHHHHHHHhC
Q 016125 107 IPVVAELQRRLT 118 (394)
Q Consensus 107 ~~~~~~l~~rl~ 118 (394)
++|+.++.+.|.
T Consensus 7 ~~y~~~l~~~L~ 18 (206)
T PF06570_consen 7 QEYIFDLRKYLR 18 (206)
T ss_pred HHHHHHHHHHHH
Confidence 456666666663
No 58
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=35.88 E-value=2.8e+02 Score=23.67 Aligned_cols=70 Identities=29% Similarity=0.391 Sum_probs=43.1
Q ss_pred eCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 99 RDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP 178 (394)
Q Consensus 99 f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~le~~~~~ 178 (394)
|++-.+ +.++-|+.||+... ||= +++...|..|=....+-..++++.
T Consensus 41 fdpLp~---P~ld~lr~rL~~a~-------------------------LP~--k~iksal~aYe~AC~RWr~~l~e~--- 87 (147)
T PF04611_consen 41 FDPLPT---PDLDGLRTRLQEAK-------------------------LPP--KAIKSALSAYEKACARWRSDLEES--- 87 (147)
T ss_pred cCCCCC---ccHHHHHHHHHHcC-------------------------CCh--HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 555432 45778888886542 555 556666665544444444455544
Q ss_pred HHHHHhhccccccHHHHHHHHHHH
Q 016125 179 ALDELTSKISSRNLDRVRKLKSAM 202 (394)
Q Consensus 179 ~ld~L~~~~~~~~L~~L~~lk~~L 202 (394)
++.-...+++.+++.|..||-++
T Consensus 88 -F~~tA~svsP~Nlhll~~LR~rl 110 (147)
T PF04611_consen 88 -FDITAKSVSPHNLHLLNQLRFRL 110 (147)
T ss_pred -HHHHHhhcCchhHHHHHHHHHHH
Confidence 34445678888999888777554
No 59
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=35.62 E-value=7.3 Score=31.37 Aligned_cols=11 Identities=0% Similarity=-0.170 Sum_probs=4.6
Q ss_pred HHHHHHHHHhC
Q 016125 380 VFIMSYARFKG 390 (394)
Q Consensus 380 ~~~~~~frrk~ 390 (394)
++.|||++|||
T Consensus 85 ~l~w~f~~r~k 95 (96)
T PTZ00382 85 FLCWWFVCRGK 95 (96)
T ss_pred HHhheeEEeec
Confidence 33344444443
No 60
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=35.07 E-value=54 Score=35.24 Aligned_cols=62 Identities=10% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 016125 316 QLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYA 386 (394)
Q Consensus 316 ~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~f 386 (394)
.+-.+|++.+. +.+.+..+.+.+++++.++-.+.. ...|.|+|+...+.. ++.+.+.+++|+
T Consensus 157 El~p~k~R~~~----~~~~~~~~i~~~~~~~~ia~~~~~--~~~WRw~~~~~~i~~---~i~~vl~~~fY~ 218 (599)
T PF06609_consen 157 ELVPNKWRGLG----LAIASIPFIITTWISPLIAQLFAA--HSGWRWIFYIFIIWS---GIALVLIFFFYF 218 (599)
T ss_pred HhcccchhhhH----hHHHHHHHHhhhcccHHHHHHhcc--CCCcchHHHHHHHHH---HHHHHHHHHHhC
Confidence 33467888655 556666677777777787776632 235999997665532 233333444554
No 61
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=35.04 E-value=1.3e+02 Score=27.23 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCcc-ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016125 329 LFLSSGTVSLSIYSLVAGIFGMNIPYTWN-ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 390 (394)
Q Consensus 329 l~LTi~s~i~~~~T~IaGifGMN~~~~pE-~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 390 (394)
++|++++.+....+++ ++=+..++-. .....|+++++.+. +++++.++|-||+.|
T Consensus 26 lvLgvVs~~iL~F~~~---~~~~~~~~~~~~G~~~gl~~a~~gl----~~l~~si~~~fry~R 81 (183)
T PF12263_consen 26 LVLGVVSAVILLFANL---FSGRATSPNRNPGLGIGLFLAICGL----VALFFSIFWSFRYTR 81 (183)
T ss_pred HHHHHHHHHHHHHHhh---ccccCCCCCcCCCcchHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3788888776665542 3333333321 11245666655543 333345566665544
No 62
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=34.79 E-value=3.7e+02 Score=25.21 Aligned_cols=21 Identities=5% Similarity=0.139 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 016125 191 NLDRVRKLKSAMTRLTARVQK 211 (394)
Q Consensus 191 ~L~~L~~lk~~L~~l~~~v~~ 211 (394)
.-+.|..+.+++..|+..+..
T Consensus 51 s~e~l~eY~~ri~~Lk~l~~~ 71 (251)
T PF09753_consen 51 SKEVLNEYSERIDFLKGLIEA 71 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777666666543
No 63
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=34.75 E-value=56 Score=22.27 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=4.2
Q ss_pred HHHHHHHHhC
Q 016125 381 FIMSYARFKG 390 (394)
Q Consensus 381 ~~~~~frrk~ 390 (394)
+...+.++|+
T Consensus 23 i~~~~~~~r~ 32 (45)
T TIGR03141 23 ILWSLLDRRR 32 (45)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 64
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=34.53 E-value=94 Score=21.07 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=15.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016125 360 HGYMFKWVVIFTAIFCAVTFVFIMSYARFK 389 (394)
Q Consensus 360 ~~~gF~~v~~~~~~~~~~l~~~~~~~frrk 389 (394)
+++|..-.+ ++++++++.+...+||.||
T Consensus 9 s~vGL~Sl~--vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 9 SDVGLMSLI--VIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred ChHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 455543322 2334566666777788776
No 65
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=34.50 E-value=2.2e+02 Score=22.13 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cHHHHHHHHHHHHHHHHH
Q 016125 156 VALEAICSFLAARTTELETAAYPALDELTSKISSR-NLDRVRKLKSAMTRLTAR 208 (394)
Q Consensus 156 ~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~-~L~~L~~lk~~L~~l~~~ 208 (394)
..|+.+...|+..++.+.+.+..+++++..+++.. .|-++...-.+.+-++..
T Consensus 7 g~l~~v~~~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNa 60 (80)
T PRK15326 7 GYLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNA 60 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999999998876643 455665555555555543
No 66
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=33.88 E-value=3.2e+02 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016125 199 KSAMTRLTARVQKVRDELEQLL 220 (394)
Q Consensus 199 k~~L~~l~~~v~~~re~l~~ll 220 (394)
......+..+...++++-++|+
T Consensus 34 ~~~~~~Vs~kT~~l~~~ce~Ll 55 (157)
T PF04136_consen 34 QEQYNSVSEKTNSLHEACEQLL 55 (157)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333333
No 67
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=33.28 E-value=1.7e+02 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIP 353 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~ 353 (394)
.+-++.+++++++.++|++=+...
T Consensus 7 wll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 7 WLLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566777888888889998887765
No 68
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=33.10 E-value=73 Score=21.74 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=5.0
Q ss_pred HHHHHHHHHhC
Q 016125 380 VFIMSYARFKG 390 (394)
Q Consensus 380 ~~~~~~frrk~ 390 (394)
..+..+.++|+
T Consensus 21 l~~~~~~~~r~ 31 (46)
T PF04995_consen 21 LIVWSLRRRRR 31 (46)
T ss_pred HHHHHHHHHHH
Confidence 34444445444
No 69
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=32.75 E-value=6.1e+02 Score=27.01 Aligned_cols=58 Identities=14% Similarity=0.355 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 016125 167 ARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (394)
Q Consensus 167 ~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~ 224 (394)
..+.+++..+..+.+.....--...-+.+..+...|..++..+..+++.|.+|++.+.
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~ 132 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEE 132 (560)
T ss_pred HhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444333111222345667777777788888888888888776554
No 70
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=32.33 E-value=45 Score=36.71 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=18.6
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 363 MFKW-VVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 363 gF~~-v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
.|.. ++++++++.+++..++++|||||.|
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 4544 4444455555566677889999876
No 71
>PRK04406 hypothetical protein; Provisional
Probab=31.96 E-value=2.2e+02 Score=21.73 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 163 SFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELE 217 (394)
Q Consensus 163 ~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~ 217 (394)
+.++.++.+||..+..-.+.+.+ .+ +.|..-.+.+..|++.++-+++-+.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~-LN----~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEE-LN----DALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666554433322211 00 1233344445555555544444333
No 72
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=31.81 E-value=3.5e+02 Score=26.76 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016125 172 LETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (394)
Q Consensus 172 le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~ 221 (394)
+.....++.+.......=.....|..+-++|.+|+++++.++..+.++..
T Consensus 268 lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 268 LRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444333233456667788888888888888888877653
No 73
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.74 E-value=4.3e+02 Score=24.65 Aligned_cols=29 Identities=7% Similarity=0.334 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 191 NLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (394)
Q Consensus 191 ~L~~L~~lk~~L~~l~~~v~~~re~l~~l 219 (394)
....|.++|.-|.....-...+|.-+...
T Consensus 87 ~~htL~RHrEILqdy~qef~rir~n~~a~ 115 (231)
T KOG3208|consen 87 VMHTLQRHREILQDYTQEFRRIRSNIDAK 115 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444444444433
No 74
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=31.62 E-value=2e+02 Score=28.04 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 016125 330 FLSSGTVSLSIYSLV 344 (394)
Q Consensus 330 ~LTi~s~i~~~~T~I 344 (394)
.+|.+|++++...+.
T Consensus 231 l~TslTt~l~llpL~ 245 (297)
T PRK13021 231 MVTSGTTLMTVGALW 245 (297)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666665544443
No 75
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=31.61 E-value=60 Score=28.64 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCchhHHH
Q 016125 191 NLDRVRKLKSAMTRLTARVQK---VRDELEQLLDDDDDMADL 229 (394)
Q Consensus 191 ~L~~L~~lk~~L~~l~~~v~~---~re~l~~ll~~d~dm~~m 229 (394)
.|.+|..+|++|..|++.+.. +|+.|++++.+++.+..+
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L 152 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKL 152 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHH
Confidence 367788889999999988754 899999999877665543
No 76
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=31.48 E-value=2.6e+02 Score=23.19 Aligned_cols=14 Identities=7% Similarity=-0.175 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 016125 374 FCAVTFVFIMSYAR 387 (394)
Q Consensus 374 ~~~~l~~~~~~~fr 387 (394)
+.+++.+....||+
T Consensus 46 G~L~~l~S~~VYfw 59 (114)
T PF11023_consen 46 GLLAILASTAVYFW 59 (114)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555554
No 77
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.36 E-value=1.2e+02 Score=22.62 Aligned_cols=17 Identities=18% Similarity=0.471 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016125 195 VRKLKSAMTRLTARVQK 211 (394)
Q Consensus 195 L~~lk~~L~~l~~~v~~ 211 (394)
|..+++.+..|..++..
T Consensus 34 I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 34 IDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 78
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=31.00 E-value=3.8e+02 Score=23.80 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCC
Q 016125 292 IDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNI 352 (394)
Q Consensus 292 vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~ 352 (394)
...+...++...+.|......+|-....--+.+-+ -|..+|||+||+.=
T Consensus 120 ~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~------------FP~~lvA~~~gf~~ 168 (186)
T PF04011_consen 120 FQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQ------------FPTNLVAGIFGFKP 168 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHhcCCCc
Confidence 44556666666777776666666544433332222 59999999999663
No 79
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=30.74 E-value=69 Score=19.88 Aligned_cols=10 Identities=10% Similarity=-0.263 Sum_probs=4.6
Q ss_pred HHHHHHHHhC
Q 016125 381 FIMSYARFKG 390 (394)
Q Consensus 381 ~~~~~frrk~ 390 (394)
+.+++.|||+
T Consensus 24 ~~~~~~~rk~ 33 (34)
T TIGR01167 24 GGLLLRKRKK 33 (34)
T ss_pred HHHHheeccc
Confidence 4444444443
No 80
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=29.86 E-value=5.4e+02 Score=25.20 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=11.4
Q ss_pred echhhhHHHhCCCcch
Q 016125 44 VDKHAIMHRVQIHARD 59 (394)
Q Consensus 44 ~~k~~l~~~~~L~~RD 59 (394)
+.-.+.+...|++.-|
T Consensus 14 isL~~FL~~~~I~F~d 29 (325)
T PF08317_consen 14 ISLQDFLNMTGIRFYD 29 (325)
T ss_pred cCHHHHHHHhCceeCC
Confidence 4556777788888844
No 81
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=29.79 E-value=2.4e+02 Score=27.32 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 016125 330 FLSSGTVSLSIYSLV 344 (394)
Q Consensus 330 ~LTi~s~i~~~~T~I 344 (394)
.+|.+|++++...+.
T Consensus 232 l~TslTTl~~~l~L~ 246 (289)
T PRK13022 232 IITSLTTLLVVLALY 246 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566677666655554
No 82
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=29.67 E-value=2.8e+02 Score=32.77 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q 016125 309 TEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLV 344 (394)
Q Consensus 309 te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~I 344 (394)
..+++|..++....+. ++|.+|+.++..++.
T Consensus 1328 l~eIIN~SINQTLsRT-----I~TSlTTLLallaLl 1358 (1403)
T PRK12911 1328 MPILINDALQKTLGRT-----VMTTATTLSVLLILL 1358 (1403)
T ss_pred HHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHH
Confidence 3455555444433333 567777777666655
No 83
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=29.55 E-value=1.1e+02 Score=18.91 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 016125 364 FKWVVIFTAIFCAVTF 379 (394)
Q Consensus 364 F~~v~~~~~~~~~~l~ 379 (394)
|.|++++.+.+++++.
T Consensus 4 faWilG~~lA~~~~i~ 19 (28)
T PF08173_consen 4 FAWILGVLLACAFGIL 19 (28)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566665444444333
No 84
>PRK02119 hypothetical protein; Provisional
Probab=29.38 E-value=2e+02 Score=21.76 Aligned_cols=23 Identities=4% Similarity=0.252 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016125 196 RKLKSAMTRLTARVQKVRDELEQ 218 (394)
Q Consensus 196 ~~lk~~L~~l~~~v~~~re~l~~ 218 (394)
..-.+.+..+++.++.+++-+..
T Consensus 33 ~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 33 IEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555444444433
No 85
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=29.15 E-value=2.1e+02 Score=28.98 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=14.7
Q ss_pred CcchhHHHH---HHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 360 HGYMFKWVV---IFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 360 ~~~gF~~v~---~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
.+||.+.+. .++.+++.+..+..+.|.-+++++
T Consensus 51 ~~WGl~I~~y~~~~vglaag~~~is~~~~vf~~~~~ 86 (394)
T PRK10881 51 YPWGIWIAFDVLIGTGFACGGWALAWLVYVFNRGQY 86 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch
Confidence 566665543 122233444444445554334443
No 86
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=29.02 E-value=1.3e+02 Score=27.02 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYT 355 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~ 355 (394)
++++.+++|. .+-+.+.||+|+-..
T Consensus 24 ii~~G~lGFl-l~G~sSYl~~nll~~ 48 (180)
T PF02392_consen 24 IIFLGGLGFL-LVGISSYLGKNLLPF 48 (180)
T ss_pred HHHHhhHHHH-HhHHHHHhCCCcccc
Confidence 4556666665 445678899998644
No 87
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=28.79 E-value=19 Score=31.91 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 016125 331 LSSGTVSLSIYSLVAGIFG 349 (394)
Q Consensus 331 LTi~s~i~~~~T~IaGifG 349 (394)
++++.++++...+..|+|.
T Consensus 9 ~n~l~~l~g~~li~~g~~~ 27 (221)
T PF00335_consen 9 LNVLFLLLGLALIGVGIWL 27 (221)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555
No 88
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=28.34 E-value=2e+02 Score=26.10 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhcc
Q 016125 336 VSLSIYSLVAGIFG 349 (394)
Q Consensus 336 ~i~~~~T~IaGifG 349 (394)
+.++..+++.|+.|
T Consensus 88 ~~~~if~~~~gi~~ 101 (206)
T PF06570_consen 88 LFFGIFSLLFGIMG 101 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 89
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=28.26 E-value=63 Score=26.23 Aligned_cols=10 Identities=10% Similarity=-0.074 Sum_probs=4.4
Q ss_pred HHHHHHHHhC
Q 016125 381 FIMSYARFKG 390 (394)
Q Consensus 381 ~~~~~frrk~ 390 (394)
....+.|+|.
T Consensus 38 c~~~~~r~r~ 47 (102)
T PF11669_consen 38 CACRHRRRRR 47 (102)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 90
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.01 E-value=5.8e+02 Score=26.02 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHhHHHHHHh
Q 016125 281 LEMLLEAYFMQIDSTLNKLSTLREYID-----DTEDYINIQLDNHRNQLIQLE 328 (394)
Q Consensus 281 lE~LLE~y~~~vd~~~~~l~~l~e~i~-----~te~~i~~~Ld~~rN~lmkl~ 328 (394)
+..++|-+..++.++-+.+..+.|.++ .+.|++ =.+.+-+|+|-|++
T Consensus 267 lNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~-E~~Es~qtRisklE 318 (395)
T PF10267_consen 267 LNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIW-EVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHH
Confidence 334455555555555555554444221 112221 23567999999999
No 91
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=27.98 E-value=2.9e+02 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 016125 166 AARTTELETAAYPALD 181 (394)
Q Consensus 166 e~~~~~le~~~~~~ld 181 (394)
+..++.+++.+.++.+
T Consensus 32 ~~ti~~l~~~~~~i~~ 47 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 3333444444444433
No 92
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.87 E-value=2e+02 Score=21.66 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 195 VRKLKSAMTRLTARVQKVRDELEQ 218 (394)
Q Consensus 195 L~~lk~~L~~l~~~v~~~re~l~~ 218 (394)
|..-.+.+..+++.++-+.+-+..
T Consensus 31 v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 31 VTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555544444433
No 93
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=27.77 E-value=6.7e+02 Score=29.46 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016125 192 LDRVRKLKSAMTRLTARVQKVRDELEQLL 220 (394)
Q Consensus 192 L~~L~~lk~~L~~l~~~v~~~re~l~~ll 220 (394)
.+.+-++-..+..|++.++..++.|.++-
T Consensus 1224 ~~~i~~l~~~~~~lr~~l~~~~e~L~~~E 1252 (1758)
T KOG0994|consen 1224 AEDIAQLASATESLRRQLQALTEDLPQEE 1252 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45566667777888888888777776654
No 94
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=27.74 E-value=2e+02 Score=32.57 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=22.7
Q ss_pred HHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 339 SIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 339 ~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
.|.+.+.++|||.= + ++..+.|.+++.+..+++.-+.=.+|+||.||
T Consensus 855 ~p~~~~~~~~~~~~---l---~~~~~~~~~~~~~~~~~~~e~~K~~~~~~~~~ 901 (902)
T PRK10517 855 LPFSPLASYLQLQA---L---PLSYFPWLVAILAGYMTLTQLVKGFYSRRYGW 901 (902)
T ss_pred hhHHHHHHhhCCcC---C---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44445678888762 1 11112233332222223334445678888776
No 95
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=27.69 E-value=6.9e+02 Score=25.73 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Q 016125 154 LEVALEAICSFLAARTTELETAAYP---ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMA 227 (394)
Q Consensus 154 LE~iL~~~~~~Le~~~~~le~~~~~---~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~ 227 (394)
=+.|-+...+.++.+++.++++.+. .++.|...-.. ...-.++.++..+..-=..+-..+.+++..+.++.
T Consensus 137 C~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~---~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~ 210 (447)
T KOG2751|consen 137 CEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQD---VSEEDLLKELKNLKEEEERLLQQLEELEKEEAELD 210 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777766542 34444432111 12334444555555555555556666666555554
No 96
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=27.60 E-value=2.2e+02 Score=25.87 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=23.6
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 016125 316 QLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGM 350 (394)
Q Consensus 316 ~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGM 350 (394)
.++-+||++..+.+- .+.+.+|+.+.++.|.++|
T Consensus 89 ~~s~~rN~i~~l~~y-~~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 89 LLSLRRNNISLLRLY-MIGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred HHhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 456699988776332 3566777788888888774
No 97
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=27.37 E-value=1.2e+02 Score=18.96 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHH
Q 016125 364 FKWVVIFTAIFCAV 377 (394)
Q Consensus 364 F~~v~~~~~~~~~~ 377 (394)
|.|++++.+.++++
T Consensus 4 faWilG~~lA~~~~ 17 (30)
T TIGR02106 4 FAWILGTLLACAFG 17 (30)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666654433333
No 98
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=27.03 E-value=2.2e+02 Score=19.67 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=7.6
Q ss_pred HHHHHHhhccc
Q 016125 340 IYSLVAGIFGM 350 (394)
Q Consensus 340 ~~T~IaGifGM 350 (394)
.+.++++.+|+
T Consensus 10 vGg~l~~~lg~ 20 (48)
T PF04226_consen 10 VGGWLFGLLGI 20 (48)
T ss_pred HHHHHHHHhcc
Confidence 46667777777
No 99
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=26.89 E-value=6.4e+02 Score=25.09 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016125 279 EELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYI 313 (394)
Q Consensus 279 ~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i 313 (394)
.++..|++.||....+..+.-..|...+..+++-+
T Consensus 62 ~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~ 96 (336)
T PF05055_consen 62 PELFRLVSDYFDSSLEASDFCEALLKCIHRARDNY 96 (336)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 56778899999887777777777777666665544
No 100
>PRK04325 hypothetical protein; Provisional
Probab=26.68 E-value=2.5e+02 Score=21.26 Aligned_cols=20 Identities=10% Similarity=0.310 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016125 197 KLKSAMTRLTARVQKVRDEL 216 (394)
Q Consensus 197 ~lk~~L~~l~~~v~~~re~l 216 (394)
.-.+.+..|++.++-+.+-+
T Consensus 34 ~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 34 RQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 101
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=26.38 E-value=1.8e+02 Score=20.59 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHH
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIF 370 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~ 370 (394)
..+-++++++...+..|+| |.+ +.. |.-||+.+..+
T Consensus 3 ~~~~~~f~i~~~~~~iGl~--~~~--~~l-~~KGy~~~~~l 38 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLW--NAP--LDL-SEKGYYAMGLL 38 (53)
T ss_pred hHHHHHHHHHHHHHHHHHH--hCC--CCH-HHHHHHHHHHH
Confidence 4567888889999999999 443 233 56678655543
No 102
>PRK00295 hypothetical protein; Provisional
Probab=26.31 E-value=2.6e+02 Score=20.78 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016125 199 KSAMTRLTARVQKVRD 214 (394)
Q Consensus 199 k~~L~~l~~~v~~~re 214 (394)
.+.+..+++.++.+++
T Consensus 32 q~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 32 QRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 103
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=26.26 E-value=3.8e+02 Score=22.29 Aligned_cols=14 Identities=14% Similarity=-0.123 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhCC
Q 016125 378 TFVFIMSYARFKGL 391 (394)
Q Consensus 378 l~~~~~~~frrk~w 391 (394)
+...+-..++|+||
T Consensus 96 ~~~~l~~~~~k~g~ 109 (135)
T PF01769_consen 96 LGYLLPIILWKIGL 109 (135)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCC
Confidence 44555666777776
No 104
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=26.22 E-value=1.6e+02 Score=24.74 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016125 331 LSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 394 (394)
Q Consensus 331 LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl~~ 394 (394)
.++.+++...+.++.-+.|.=+...- +-.|-.+ +|+ +-+..-.|++||+|+++
T Consensus 6 valLa~C~L~G~~lGdlLG~llGV~a---NVGGVGi-------AMl-LLi~~~~~l~k~G~l~~ 58 (125)
T TIGR00807 6 VALLAVCHLLGVYLGNILGMALGVKA---NVGGVGI-------AMI-LLIISKELLAKRGHLPQ 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc---ccchHHH-------HHH-HHHHHHHHHHHcCCCCh
Confidence 45677788888888888888665432 1222111 122 22345778999999863
No 105
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=26.14 E-value=1.6e+02 Score=30.08 Aligned_cols=53 Identities=17% Similarity=0.062 Sum_probs=33.0
Q ss_pred HHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 339 SIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 339 ~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
...-+..|.||-|-.+-...+...++-++...+..++.++.-.++-|++++|+
T Consensus 203 Ga~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp 255 (409)
T COG0004 203 GAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAAGALGWMLIEWLRNGKP 255 (409)
T ss_pred HHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33446789999999988877544445444444444444444555666666665
No 106
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.10 E-value=5.1e+02 Score=23.68 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016125 197 KLKSAMTRLTARVQKVRDE 215 (394)
Q Consensus 197 ~lk~~L~~l~~~v~~~re~ 215 (394)
+|||+|..|...+..+...
T Consensus 100 rLkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQA 118 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 107
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=26.03 E-value=21 Score=30.08 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccCCCCC
Q 016125 337 SLSIYSLVAGIFGMNIPYT 355 (394)
Q Consensus 337 i~~~~T~IaGifGMN~~~~ 355 (394)
.++..++++|+++.-....
T Consensus 24 ~~gi~~~~~g~~~~~~~~~ 42 (144)
T PF01957_consen 24 WGGIAAFIAGLLGLFFPDL 42 (144)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3455567777777766433
No 108
>PRK14749 hypothetical protein; Provisional
Probab=25.86 E-value=1.7e+02 Score=18.22 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 016125 364 FKWVVIFTAIFCAVTFVFIM 383 (394)
Q Consensus 364 F~~v~~~~~~~~~~l~~~~~ 383 (394)
|.|++++.+.++.++.-+++
T Consensus 4 faWiLG~~lAc~f~ilna~w 23 (30)
T PRK14749 4 LLWFVGILLMCSLSTLVLVW 23 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777755544444433433
No 109
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=25.80 E-value=3.2e+02 Score=26.11 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=42.7
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCC-CCcc-------ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 320 HRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIP-YTWN-------ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 320 ~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~-~~pE-------~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
.+-.+.+ +|.+-+++.++-|++-|++=|=++ .++. .+..|+||.+..+ ++..+-.++..+..+||+-.
T Consensus 110 s~~Si~r---~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~fW~~~s~-~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 110 SRSSIKR---TLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGFWFISSL-VFALVYGFILILTPLRWRDR 185 (261)
T ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeehHHHHHH-HHHHHHHHHHHHHhcccccc
Confidence 3444555 788889999999999998877766 3322 2345788766553 33333333444455555555
Q ss_pred CC
Q 016125 392 VG 393 (394)
Q Consensus 392 l~ 393 (394)
++
T Consensus 186 LP 187 (261)
T PF10160_consen 186 LP 187 (261)
T ss_pred CC
Confidence 54
No 110
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=25.64 E-value=2.6e+02 Score=27.35 Aligned_cols=46 Identities=13% Similarity=0.341 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 016125 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (394)
Q Consensus 171 ~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~ 224 (394)
.|+..+..+++.+. .|+-+.|.+|..+.+++...+.-+++|.....
T Consensus 29 ~L~~v~~diF~rI~--------~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~k 74 (297)
T PF11945_consen 29 YLDKVSNDIFSRIS--------ARVERNRERLQAIQQRIEVAQAKIEKLQGSKK 74 (297)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 35555555554443 35566677777777777777777777766544
No 111
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=25.64 E-value=5.5e+02 Score=23.93 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCchhHHHHHhhh
Q 016125 194 RVRKLKSAMTRLTARVQKVR-DELEQLLDDDDDMADLYLSRK 234 (394)
Q Consensus 194 ~L~~lk~~L~~l~~~v~~~r-e~l~~ll~~d~dm~~m~Lt~~ 234 (394)
+-..+.+++..+...+.... .+..-|...++++++..+.++
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~ 94 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEK 94 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455566666666665533 334455567788877766655
No 112
>PRK13682 hypothetical protein; Provisional
Probab=25.23 E-value=63 Score=22.85 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhccc
Q 016125 334 GTVSLSIYSLVAGIFGM 350 (394)
Q Consensus 334 ~s~i~~~~T~IaGifGM 350 (394)
++.+|...++|+|+||.
T Consensus 4 waliFliiA~iA~~lGF 20 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF 20 (51)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 56788889999999996
No 113
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=25.04 E-value=4.6e+02 Score=23.05 Aligned_cols=62 Identities=8% Similarity=0.161 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhHHHHHHhHHHHHHHHHHHHHHHHHhhcccC
Q 016125 290 MQIDSTLNKLSTLREYIDDTEDYINIQLDN---HRNQLIQLELFLSSGTVSLSIYSLVAGIFGMN 351 (394)
Q Consensus 290 ~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~---~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN 351 (394)
..+.++.++++.+.+.+.+.-|-+...++= ..-.+.-+-..+..+.+.+.|.-++.-++|.|
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly 126 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLY 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345566666666666666655555554432 22222222223333334455555544444444
No 114
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.99 E-value=5e+02 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=18.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 147 SPFEFRALEVALEAICSFLAARTTELETAAY 177 (394)
Q Consensus 147 lpfel~~LE~iL~~~~~~Le~~~~~le~~~~ 177 (394)
|-.-|.-|...++.+-..|+.++++++..+.
T Consensus 107 L~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~ 137 (171)
T PF04799_consen 107 LSSTFARLCQQVDQTKNELEDEIKQLEKEIQ 137 (171)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677666777776666666553
No 115
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=24.84 E-value=1.1e+02 Score=24.56 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHH
Q 016125 150 EFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNL-DRVRKLKSAMTRLTA 207 (394)
Q Consensus 150 el~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L-~~L~~lk~~L~~l~~ 207 (394)
|+.+|+.+++.....=..-..+.......+-+.|..+++..+| +.+++||++......
T Consensus 12 Ei~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~ 70 (98)
T PF04504_consen 12 EIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVK 70 (98)
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 7778888887754321000012222222233334444444333 567777776544443
No 116
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=24.76 E-value=1.4e+02 Score=21.14 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=15.5
Q ss_pred CCCccccCcchhHHHHHHHHHHHHHHHHHH
Q 016125 353 PYTWNENHGYMFKWVVIFTAIFCAVTFVFI 382 (394)
Q Consensus 353 ~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~ 382 (394)
...|..+..|||-..-+ +..++++++.++
T Consensus 22 gtlpashaqygfrllrg-if~itlviwt~v 50 (60)
T PF08196_consen 22 GTLPASHAQYGFRLLRG-IFLITLVIWTVV 50 (60)
T ss_pred CccchHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34455556788865544 344454444333
No 117
>PHA03231 glycoprotein BALF4; Provisional
Probab=24.58 E-value=5.1e+02 Score=29.09 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 016125 292 IDSTLNKLSTLREYIDDT 309 (394)
Q Consensus 292 vd~~~~~l~~l~e~i~~t 309 (394)
++++..+.......+.+.
T Consensus 632 le~m~ReyN~y~qr~~dl 649 (829)
T PHA03231 632 LEEIFREYNLYKQRFYDI 649 (829)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455555555555555443
No 118
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.45 E-value=1.5e+02 Score=27.90 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=25.2
Q ss_pred HHHHHHhhcc------------cCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 340 IYSLVAGIFG------------MNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 340 ~~T~IaGifG------------MN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
|+.+++..++ ||+++++--+.+-.|..+ +.++..+..+..|+||+-
T Consensus 177 ~a~fva~~~s~~~~~PW~~pi~~~~~~~l~v~~~i~~~~v------~~ll~~l~s~l~~~r~~v 234 (239)
T COG4200 177 PALFVASAESLPVWLPWASPILPMFSGSLSVETGILFLGV------LALLFLLSSFLFFKRKKV 234 (239)
T ss_pred HHHHHHhccccCccccchhhhhhhhccccccchhHHHHHH------HHHHHHHHHHHHHhhhcc
Confidence 8888888877 455544433222222111 223344566777888764
No 119
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.39 E-value=85 Score=27.80 Aligned_cols=39 Identities=18% Similarity=0.419 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCchhHHH
Q 016125 191 NLDRVRKLKSAMTRLTARVQK---VRDELEQLLDDDDDMADL 229 (394)
Q Consensus 191 ~L~~L~~lk~~L~~l~~~v~~---~re~l~~ll~~d~dm~~m 229 (394)
.|.+|..+|++|..|.+.... +++.++++|.+++.+..+
T Consensus 116 ~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L 157 (169)
T COG3516 116 ELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKL 157 (169)
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHH
Confidence 367788888888888887654 899999999988766543
No 120
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.32 E-value=2.1e+02 Score=31.04 Aligned_cols=29 Identities=24% Similarity=0.683 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhcccCCC
Q 016125 323 QLIQLELFLSSGTVSLSIYSLVAGIFGMNIP 353 (394)
Q Consensus 323 ~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~ 353 (394)
++.++-+.+++.|++++. +-.++||....
T Consensus 391 ~~~~il~~~gi~sii~G~--lyG~fFG~~~~ 419 (646)
T PRK05771 391 RLLKILIYLGISTIIWGL--LTGSFFGFSLP 419 (646)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhHhcCccc
Confidence 455555567777777655 34889998764
No 121
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=24.32 E-value=6.2e+02 Score=24.00 Aligned_cols=60 Identities=7% Similarity=0.063 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 394 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl~~ 394 (394)
.+..+.++..|+.+.+=+.|= ..|-. --.|=.++..+++++..+......++-+|++|++
T Consensus 191 ~m~~vGlVslPGmMtG~IL~G---~sP~~--Av~yQi~Im~~i~as~~lss~~~~~l~~r~~f~~ 250 (250)
T PF03649_consen 191 SMKTVGLVSLPGMMTGQILGG---ASPLQ--AVRYQIVIMFMILASSSLSSVLATLLVYRRYFNQ 250 (250)
T ss_pred hhhhhheeechHHHHHHHHcC---CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355555666777666555431 12222 1124333333444444556666677777777753
No 122
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=24.26 E-value=2.2e+02 Score=32.24 Aligned_cols=38 Identities=5% Similarity=-0.064 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHH
Q 016125 331 LSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVI 369 (394)
Q Consensus 331 LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~ 369 (394)
-+-.++.++..|.++|+.+|-+-..+.. .+.|+..+++
T Consensus 276 ~~g~~I~~s~lT~~~gf~~l~~~~~~~~-~~~Gi~~a~g 313 (910)
T TIGR00833 276 GTGKAILGSALTVAVAFLALSLARLPSF-KTLGVSCAVG 313 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccChHH-HHHHHHHHHH
Confidence 3445555666777788888877655544 4555544444
No 123
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=24.19 E-value=25 Score=22.87 Aligned_cols=12 Identities=0% Similarity=-0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh
Q 016125 378 TFVFIMSYARFK 389 (394)
Q Consensus 378 l~~~~~~~frrk 389 (394)
+.++.++++|||
T Consensus 28 ~~~~~~~~~krr 39 (39)
T PF00746_consen 28 LLGGGLLLVKRR 39 (39)
T ss_dssp ------------
T ss_pred HHHHHHHheecC
Confidence 334556666654
No 124
>PF11677 DUF3273: Protein of unknown function (DUF3273); InterPro: IPR021691 Some members in this family of proteins are annotated as multi-transmembrane proteins however this cannot be confirmed. Currently this family has no known function.
Probab=24.09 E-value=3.2e+02 Score=26.22 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=25.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH----hhcccCCCCCcc
Q 016125 322 NQLIQLELFLSSGTVSLSIYSLVA----GIFGMNIPYTWN 357 (394)
Q Consensus 322 N~lmkl~l~LTi~s~i~~~~T~Ia----GifGMN~~~~pE 357 (394)
|..+|+...|-.++++++..+..+ |+|.-|+...||
T Consensus 21 ~~~LR~Gf~lq~~~~~ll~i~y~a~Gg~glf~Fdl~~~pe 60 (265)
T PF11677_consen 21 SYNLRLGFLLQLLSLILLFISYWAFGGLGLFSFDLHALPE 60 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEcccCCc
Confidence 445566666666777666555555 899999999999
No 125
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=23.99 E-value=1.8e+02 Score=33.05 Aligned_cols=9 Identities=22% Similarity=0.113 Sum_probs=5.6
Q ss_pred HHHHH-hCCC
Q 016125 384 SYARF-KGLV 392 (394)
Q Consensus 384 ~~frr-k~wl 392 (394)
+|+|+ ++||
T Consensus 894 ~~~r~~~~~~ 903 (903)
T PRK15122 894 FYIRRFGQWF 903 (903)
T ss_pred HHhhhccccC
Confidence 55665 6775
No 126
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=23.72 E-value=5.3e+02 Score=23.14 Aligned_cols=65 Identities=12% Similarity=0.295 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016125 156 VALEAICSFLAARTTELETAAYPALDEL---TSKISSRNL-DRVRKLKSAMTRLTARVQKVRDELEQLL 220 (394)
Q Consensus 156 ~iL~~~~~~Le~~~~~le~~~~~~ld~L---~~~~~~~~L-~~L~~lk~~L~~l~~~v~~~re~l~~ll 220 (394)
..|+.=...|+.++..+.+.+..+..++ .+..+...+ +.+..||+.....+.++..++...+++-
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3344445556666666666665554443 334444444 4577778877777777777777776654
No 127
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.68 E-value=1.6e+02 Score=22.56 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=25.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 016125 186 KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (394)
Q Consensus 186 ~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~ 224 (394)
+.+.+..++|.++-.+...++.+|+ +|+++++.|.
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI~----tLE~ILdae~ 69 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERIE----TLERILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 4555667778888888888888884 5677886553
No 128
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=23.62 E-value=8.5e+02 Score=25.37 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 016125 188 SSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADL 229 (394)
Q Consensus 188 ~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m 229 (394)
++.+-.+++.+.|.+..--...+++|-...++.++.+++.+|
T Consensus 384 ~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~ 425 (489)
T KOG3684|consen 384 SKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDL 425 (489)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 445567788888877766667777777777777776665543
No 129
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=23.40 E-value=5.5e+02 Score=29.06 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 016125 330 FLSSGTVSLSIYSLVA 345 (394)
Q Consensus 330 ~LTi~s~i~~~~T~Ia 345 (394)
+.|.+|++++...+..
T Consensus 777 i~TslTTll~llpL~l 792 (855)
T PRK14726 777 VLTSATTLLALLALYL 792 (855)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666655553
No 130
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=1.1e+02 Score=25.17 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016125 335 TVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 390 (394)
Q Consensus 335 s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 390 (394)
+.=|+-+++|...+|-=++.+... +|||-...+++. +| ++++...|+-+
T Consensus 49 ssefIsGilVGa~iG~llD~~agT-sPwglIv~lllG--f~----AG~lnv~Rsag 97 (116)
T COG5336 49 SSEFISGILVGAGIGWLLDKFAGT-SPWGLIVFLLLG--FG----AGVLNVLRSAG 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHH--HH----HHHHHHHHHhc
Confidence 345667888888888888877766 788664333322 22 35555555543
No 131
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=23.22 E-value=2.6e+02 Score=24.05 Aligned_cols=12 Identities=8% Similarity=0.038 Sum_probs=6.8
Q ss_pred HHHHHHHhCCCC
Q 016125 382 IMSYARFKGLVG 393 (394)
Q Consensus 382 ~~~~frrk~wl~ 393 (394)
.+.+||||+-++
T Consensus 74 ~~lffkr~~~~P 85 (149)
T PF10754_consen 74 LYLFFKRKRRFP 85 (149)
T ss_pred HHHHHHccchhH
Confidence 344567766543
No 132
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.06 E-value=8.6e+02 Score=25.90 Aligned_cols=61 Identities=11% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 016125 165 LAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDD 225 (394)
Q Consensus 165 Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~d 225 (394)
....+..++..+..+.+.+..---...-..+..+...|...+..+..+++.|.+|+..+.+
T Consensus 77 ~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~ 137 (569)
T PRK04778 77 VTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEK 137 (569)
T ss_pred HHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666555555544332112223456666777777777777777777777766543
No 133
>PRK00846 hypothetical protein; Provisional
Probab=22.71 E-value=3.4e+02 Score=20.95 Aligned_cols=12 Identities=58% Similarity=0.603 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 016125 165 LAARTTELETAA 176 (394)
Q Consensus 165 Le~~~~~le~~~ 176 (394)
+++++.+||..+
T Consensus 11 le~Ri~~LE~rl 22 (77)
T PRK00846 11 LEARLVELETRL 22 (77)
T ss_pred HHHHHHHHHHHH
Confidence 444444455443
No 134
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.53 E-value=1.8e+02 Score=22.34 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=24.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 016125 187 ISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (394)
Q Consensus 187 ~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~ 224 (394)
.+....++|.++-.+...++.+| ++|++++++|.
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI----~tLE~ILd~e~ 69 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERI----DTLERILDAEH 69 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 44555667777788888888887 46788887653
No 135
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=22.05 E-value=88 Score=24.20 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIP 353 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~ 353 (394)
.+++++++|.+.--+++.||+.+.
T Consensus 13 w~ali~al~l~~q~v~~~fG~~~~ 36 (78)
T TIGR01598 13 LIALLGALFLAIQSILDNFGVLWL 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHH
Confidence 578888999999999999999765
No 136
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.03 E-value=4.9e+02 Score=26.39 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 161 ICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELE 217 (394)
Q Consensus 161 ~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~ 217 (394)
+...++.+++.++..+..+.+.+.+.. ..-.++..+++++..+.+++..+.+.+.
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~l~~~~--k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEKLEKNP--KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777766666665544 3334566777777777777776655544
No 137
>PRK10189 MATE family multidrug exporter; Provisional
Probab=21.95 E-value=2.7e+02 Score=28.82 Aligned_cols=19 Identities=16% Similarity=-0.173 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q 016125 375 CAVTFVFIMSYARFKGLVG 393 (394)
Q Consensus 375 ~~~l~~~~~~~frrk~wl~ 393 (394)
.++.++.++++||+.||..
T Consensus 448 ~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 448 WAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHcCcccc
Confidence 3444556788888888954
No 138
>COG3462 Predicted membrane protein [Function unknown]
Probab=21.90 E-value=4.6e+02 Score=21.66 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 016125 330 FLSSGTVSLSIYSLVAGIFG 349 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifG 349 (394)
.+.+++++...+-.-.|+||
T Consensus 12 ligliavi~~v~li~~~~~g 31 (117)
T COG3462 12 LIGLIAVIAVVGLIPSGFHG 31 (117)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 44555555444444445555
No 139
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.54 E-value=3.1e+02 Score=19.53 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHH
Q 016125 160 AICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVR 213 (394)
Q Consensus 160 ~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~r 213 (394)
+-...|+.+...||..++.. ...++.+. ..+..+||+=..|+..+.+++
T Consensus 5 shl~eL~kkHg~le~ei~ea----~n~Ps~dd-~~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEA----MNSPSSDD-LAIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHHHHhhchHHHHHHHH----hcCCCcch-HHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777765433 22333333 246677776666655554443
No 140
>PRK13694 hypothetical protein; Provisional
Probab=21.53 E-value=4e+02 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=12.1
Q ss_pred CccHHHHHHHHHHHHHH
Q 016125 275 ENDVEELEMLLEAYFMQ 291 (394)
Q Consensus 275 ~~~~~elE~LLE~y~~~ 291 (394)
.++.+|-|.+|+.|.+-
T Consensus 63 ~~er~E~EaiLe~Y~~A 79 (83)
T PRK13694 63 DDERAEEEAILDLYMDA 79 (83)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 34567778889988754
No 141
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.42 E-value=5e+02 Score=22.05 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-----cccHHHHHHHHHHHHHHHHHHHHHH
Q 016125 164 FLAARTTELETAAYPALDELTSKIS-----SRNLDRVRKLKSAMTRLTARVQKVR 213 (394)
Q Consensus 164 ~Le~~~~~le~~~~~~ld~L~~~~~-----~~~L~~L~~lk~~L~~l~~~v~~~r 213 (394)
.|..++++++.....+...+.+.-. ...|+++..+...|......+..+-
T Consensus 53 ~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v 107 (131)
T PF10158_consen 53 ALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTV 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555543211 1245556666655555555444433
No 142
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=21.39 E-value=3.5e+02 Score=20.02 Aligned_cols=58 Identities=14% Similarity=0.069 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
.+-++-++++..++-.|+|-|-=+-+ .. .+.......= +..++++ ++++.+-.+-||+
T Consensus 3 i~iv~lll~ii~sL~saL~~l~kd~~-~~-~rm~~~L~~R--V~lS~~l-~~lil~~~~~G~i 60 (63)
T PF11137_consen 3 ILIVLLLLAIIASLFSALFFLVKDKG-SS-KRMVKALGRR--VGLSALL-FLLILIALYTGWI 60 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC-CC-chHHHHHHHH--HHHHHHH-HHHHHHHHHhCCC
Confidence 46778888999999999999975433 22 3332222221 2223332 3445666677887
No 143
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=21.34 E-value=4.7e+02 Score=21.57 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 156 VALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (394)
Q Consensus 156 ~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~l 219 (394)
+.+-.-...|.++++++++.+..-+|.-..+ ....-.++-.+-.++..++..+..+++-+.++
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~S-Ra~mhrRlDElV~Rv~~lEs~~~~lk~dVsem 66 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAAS-RASMHRRLDELVERVTTLESSVSTLKADVSEM 66 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 3444445666677777777666554443221 11223455555666666666666665555444
No 144
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.26 E-value=7.2e+02 Score=26.06 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCc
Q 016125 150 EFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVR-----DELEQLLDDDD 224 (394)
Q Consensus 150 el~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~r-----e~l~~ll~~d~ 224 (394)
++..||.+++.+...++.+-+.|......+-.+ ...-+.+...-+-.+|+....|+..|..-| |+++++++--.
T Consensus 141 q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE-~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsa 219 (508)
T PF00901_consen 141 QIEILEKALKSYGKIVKEENKQLDRLARALQKE-SRERTQDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSA 219 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccH
Confidence 445699999999988888888887765433322 222334445567788888888888887755 56667776555
Q ss_pred hhH
Q 016125 225 DMA 227 (394)
Q Consensus 225 dm~ 227 (394)
|++
T Consensus 220 eVl 222 (508)
T PF00901_consen 220 EVL 222 (508)
T ss_pred HHH
Confidence 554
No 145
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=21.13 E-value=2.2e+02 Score=18.88 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=6.8
Q ss_pred HHHHHHHHHH-HHHHhC
Q 016125 375 CAVTFVFIMS-YARFKG 390 (394)
Q Consensus 375 ~~~l~~~~~~-~frrk~ 390 (394)
++.+.+.++. -|.+||
T Consensus 16 ~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 16 MAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 3333333333 355554
No 146
>PRK10633 hypothetical protein; Provisional
Probab=20.85 E-value=4.1e+02 Score=20.66 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHH
Q 016125 331 LSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIF 370 (394)
Q Consensus 331 LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~ 370 (394)
.|++-+++-...-..+.||.+-..+.-. -|-.|++.+++
T Consensus 14 ~al~L~l~y~~~W~~~aY~~~~~~~i~G-lP~WF~~sCi~ 52 (80)
T PRK10633 14 WALGLTLLYLAAWLVAAYLPGNAPGFTG-LPHWFEMACLL 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccC-CcHHHHHHHHH
Confidence 3343333333334444555442222222 35445555543
No 147
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=20.62 E-value=2.8e+02 Score=28.82 Aligned_cols=54 Identities=11% Similarity=-0.070 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHH-HHHHHHHHhCCCC
Q 016125 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFV-FIMSYARFKGLVG 393 (394)
Q Consensus 330 ~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~-~~~~~frrk~wl~ 393 (394)
.++++++.....++..|.|+- .+.++|.+.++.+.+++-++ ..+-|.++++|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~g~~~~~p~~~l~~~~~~~~~~~~ 166 (495)
T PRK11644 112 QGAALTAAALLQSLPWLWHGK----------EGWNALLLTLTGGLTLAPTCLLFWHYLAQNTWLP 166 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----------chHHHHHHHHhchHHHHHHHHHHHHHHhhccccc
Confidence 455555555555566666653 12244444433333333333 3333777788864
No 148
>PRK02870 heat shock protein HtpX; Provisional
Probab=20.56 E-value=3.8e+02 Score=26.64 Aligned_cols=29 Identities=28% Similarity=0.180 Sum_probs=14.7
Q ss_pred HhHHHHHHhHHHHHHHHH-HHHHHHHHhhcc
Q 016125 320 HRNQLIQLELFLSSGTVS-LSIYSLVAGIFG 349 (394)
Q Consensus 320 ~rN~lmkl~l~LTi~s~i-~~~~T~IaGifG 349 (394)
.+|.+ |.-+.+...+++ +.++.+++|+||
T Consensus 18 ~~n~~-kt~~l~~~~~~l~~~~g~~~~~~~~ 47 (336)
T PRK02870 18 RRNRL-KTRAVIATYLAIFLFIGLLVDAIRI 47 (336)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34433 333344444444 445666777787
No 149
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=20.40 E-value=1.1e+02 Score=29.49 Aligned_cols=39 Identities=15% Similarity=-0.056 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhcc--c--CCCCCccccCcchhHHHHHHHH
Q 016125 331 LSSGTVSLSIYSLVAGIFG--M--NIPYTWNENHGYMFKWVVIFTA 372 (394)
Q Consensus 331 LTi~s~i~~~~T~IaGifG--M--N~~~~pE~~~~~gF~~v~~~~~ 372 (394)
.|++..+++...+++|+++ . |+... . ++.++.+++++++
T Consensus 7 ~t~iGii~g~~~i~~~i~~gg~~~~~~~~--~-~~~s~lIV~GGt~ 49 (271)
T PRK06926 7 LTPVGIFLGITIVVLGVISNSGLSGFLSF--I-DLTSILIVTGGLC 49 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHH--h-hHhHHHHHHHHHH
Confidence 5788888888888877763 3 23222 2 4556766776554
No 150
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.35 E-value=5.7e+02 Score=22.15 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=38.8
Q ss_pred cccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 147 SPFEF-RALEVALEAICSFLAARTTELETAAYPA---LDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQ 218 (394)
Q Consensus 147 lpfel-~~LE~iL~~~~~~Le~~~~~le~~~~~~---ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ 218 (394)
|+=|- ..++.|.+.+... +..|......- +..|... .+.+-+++..+.+++..|+.++...|-.+..
T Consensus 44 LT~EQQa~~q~I~~~f~~~----t~~LRqqL~aKr~ELnALl~~-~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQ----TSALRQQLVSKRYEYNALLTA-NPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred CCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43343 3366666665544 33444443322 2223222 2334577999999999999988887765543
No 151
>COG2733 Predicted membrane protein [Function unknown]
Probab=20.16 E-value=3.4e+02 Score=27.62 Aligned_cols=67 Identities=10% Similarity=-0.020 Sum_probs=39.8
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHH-HHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016125 319 NHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKW-VVIFTAIFCAVTFVFIMSYARFKGLVG 393 (394)
Q Consensus 319 ~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~-v~~~~~~~~~~l~~~~~~~frrk~wl~ 393 (394)
+++|.+-+...+.|.+.++++..-+++-+|+=| + |. ||.. ++=..|+++++=+.++...||+-=|++
T Consensus 2 ~rl~~lrr~K~iA~~lL~i~~~~f~l~~~~~nn----~---w~-g~v~a~aEAAmVGgLADWFAVtALFr~Plgip 69 (415)
T COG2733 2 NKLNELRRAKVIATGLLLIAAGVFILCRFFENN----A---WV-GFVGAIAEAAMVGGLADWFAVTALFRHPLGIP 69 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHhccc----H---HH-HHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCC
Confidence 345555555557777777776666666777666 1 21 2322 222345567777788888888655543
No 152
>PRK00736 hypothetical protein; Provisional
Probab=20.03 E-value=3.8e+02 Score=19.94 Aligned_cols=16 Identities=0% Similarity=0.246 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016125 199 KSAMTRLTARVQKVRD 214 (394)
Q Consensus 199 k~~L~~l~~~v~~~re 214 (394)
.+.+..|++.++-+.+
T Consensus 32 q~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 32 WKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
Done!