Query 016125
Match_columns 394
No_of_seqs 234 out of 1493
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 6.5E-53 2.2E-57 395.6 26.9 240 26-324 15-261 (261)
2 2iub_A CORA, divalent cation t 100.0 9.4E-38 3.2E-42 309.8 27.3 282 25-392 68-363 (363)
3 4ev6_A Magnesium transport pro 100.0 2.1E-36 7.1E-41 297.6 32.8 282 24-392 46-339 (339)
4 4egw_A Magnesium transport pro 99.7 3.8E-16 1.3E-20 149.1 22.4 219 24-326 46-280 (280)
5 3nvo_A Zinc transport protein 99.6 3.7E-14 1.3E-18 133.9 20.8 166 25-224 39-218 (264)
6 3ck6_A Putative membrane trans 99.5 9.6E-13 3.3E-17 123.4 18.8 202 29-325 32-252 (252)
7 2bbh_A Divalent cation transpo 99.4 1.6E-12 5.5E-17 122.9 11.4 169 25-222 59-241 (269)
8 2hn1_A CORA, magnesium and cob 99.4 2.7E-12 9.1E-17 121.3 12.3 169 25-224 64-243 (266)
9 2iub_A CORA, divalent cation t 95.8 0.78 2.7E-05 44.4 19.3 105 279-390 253-358 (363)
10 4ev6_A Magnesium transport pro 92.9 6 0.00021 37.6 17.9 101 283-391 233-335 (339)
11 4egw_A Magnesium transport pro 90.2 2.2 7.6E-05 39.5 11.2 60 153-219 157-216 (280)
12 1nfn_A Apolipoprotein E3; lipi 77.8 22 0.00075 31.0 11.0 66 155-221 61-127 (191)
13 2ks1_B Epidermal growth factor 74.2 4.7 0.00016 26.6 4.2 15 376-390 25-39 (44)
14 3nvo_A Zinc transport protein 71.3 15 0.0005 33.3 8.6 24 198-221 185-208 (264)
15 3ck6_A Putative membrane trans 68.8 14 0.00047 33.3 7.7 30 291-320 211-240 (252)
16 2k21_A Potassium voltage-gated 68.7 4.1 0.00014 33.2 3.5 32 360-391 49-80 (138)
17 2l2t_A Receptor tyrosine-prote 68.1 8.2 0.00028 25.5 4.3 14 377-390 25-38 (44)
18 3v86_A De novo design helix; c 67.3 12 0.00043 21.0 4.3 25 195-219 2-26 (27)
19 2jwa_A Receptor tyrosine-prote 63.3 13 0.00045 24.5 4.6 20 372-391 21-40 (44)
20 2k1k_A Ephrin type-A receptor 55.5 8.1 0.00028 24.6 2.5 15 376-390 24-38 (38)
21 1gs9_A Apolipoprotein E, APOE4 50.8 54 0.0018 27.8 7.8 27 278-304 130-157 (165)
22 2k1a_A Integrin alpha-IIB; sin 50.6 33 0.0011 22.3 4.8 28 365-392 10-37 (42)
23 1txp_A HnRNP C, heterogeneous 49.2 20 0.00067 21.0 3.1 24 196-219 2-25 (28)
24 3swf_A CGMP-gated cation chann 46.7 83 0.0028 23.0 7.8 46 161-214 8-53 (74)
25 2l8s_A Integrin alpha-1; trans 46.3 18 0.00062 24.9 3.2 7 384-390 34-40 (54)
26 2knc_A Integrin alpha-IIB; tra 46.1 25 0.00086 24.2 3.9 7 384-390 37-43 (54)
27 3ghg_A Fibrinogen alpha chain; 45.4 2E+02 0.0067 29.0 11.7 31 289-319 130-160 (562)
28 2l7b_A Apolipoprotein E, APO-E 43.3 60 0.002 30.5 7.5 27 197-223 111-137 (307)
29 1deq_A Fibrinogen (alpha chain 41.9 2E+02 0.0067 27.7 10.7 86 155-300 108-193 (390)
30 3r2p_A Apolipoprotein A-I; amp 38.9 96 0.0033 26.5 7.7 91 150-305 93-185 (185)
31 3p8c_D Wiskott-aldrich syndrom 37.5 88 0.003 28.9 7.5 55 154-209 26-80 (279)
32 3s84_A Apolipoprotein A-IV; fo 37.0 2.4E+02 0.0084 25.7 13.0 32 277-308 89-121 (273)
33 3s8f_C Cytochrome C oxidase po 36.7 71 0.0024 19.7 4.5 29 360-388 4-32 (34)
34 1nfn_A Apolipoprotein E3; lipi 35.1 1E+02 0.0035 26.6 7.3 28 278-305 130-158 (191)
35 2ca5_A MXIH; transport protein 34.7 1.2E+02 0.0041 22.7 6.4 64 158-221 12-80 (85)
36 2j69_A Bacterial dynamin-like 31.8 4.5E+02 0.015 27.2 13.8 14 342-355 519-532 (695)
37 1vcs_A Vesicle transport throu 26.2 2.1E+02 0.0072 21.9 6.9 22 191-212 72-93 (102)
38 2g0u_A Type III secretion syst 26.0 1.1E+02 0.0039 23.2 5.1 60 157-216 17-77 (92)
39 3szr_A Interferon-induced GTP- 26.0 3.5E+02 0.012 27.4 10.7 23 144-168 421-443 (608)
40 1iij_A ERBB-2 receptor protein 25.7 27 0.00094 21.8 1.3 15 376-390 21-35 (35)
41 3onj_A T-snare VTI1; helix, HA 24.9 2.1E+02 0.0073 21.6 6.7 22 192-213 71-93 (97)
42 3swy_A Cyclic nucleotide-gated 20.1 2E+02 0.0067 19.0 6.2 40 161-208 6-45 (46)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-53 Score=395.61 Aligned_cols=240 Identities=28% Similarity=0.435 Sum_probs=221.1
Q ss_pred CceEEEEEcCCCCeeEEE--echhhhHHHhCCCcchHhhhcCCC-CCCeEEeeeCCeEEeeccceeeEeecCeEEEeCCC
Q 016125 26 SSRSWILLDAAGNSTVLD--VDKHAIMHRVQIHARDLRILDPLL-SYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPL 102 (394)
Q Consensus 26 ~~~~w~~~d~~g~~~~~~--~~k~~l~~~~~L~~RDlr~ld~~~-~~~~~I~~R~~~Ilv~le~i~~II~~d~vl~f~~~ 102 (394)
...+|++||..|++..++ ++|+++++++||+|||||+|||.+ +++|+|++|++||+||++||||||++|+|++|++.
T Consensus 15 ~~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~ 94 (261)
T 3rkg_A 15 LFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTT 94 (261)
T ss_dssp GEEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCS
T ss_pred ceEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCC
Confidence 378999999999999986 999999999999999999999984 67889999999999999999999999999999998
Q ss_pred CCCch----hHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 103 DEHVI----PVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP 178 (394)
Q Consensus 103 ~~~~~----~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~le~~~~~ 178 (394)
++.+. .|+.+++.|+..++ .+.+||||+|||+||.++|..|++++..++..+.+
T Consensus 95 ~~~~~~~~~~f~~~l~~~l~~~~----------------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~ 152 (261)
T 3rkg_A 95 NPSAAAKLSVLMYDLESKLSSTK----------------------NNSQFYEHRALESIFINVMSALETDFKLHSQICIQ 152 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSS----------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccCC----------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76543 48889999986542 24699999999999999999999999999999999
Q ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCCCCCCCccc
Q 016125 179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGS 258 (394)
Q Consensus 179 ~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
++++|++++++..|++|+..+++|+.+..+++.+|++|+++|++|+||+.||||++..
T Consensus 153 ~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~---------------------- 210 (261)
T 3rkg_A 153 ILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS---------------------- 210 (261)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------------------
Confidence 9999999999999999999999999999999999999999999999999999998742
Q ss_pred ccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 016125 259 KISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQL 324 (394)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~l 324 (394)
..++++|+|||||+|++|+|+++++++.+.++|++|||++++.||++||++
T Consensus 211 ---------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L 261 (261)
T 3rkg_A 211 ---------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261 (261)
T ss_dssp ---------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ---------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 357899999999999999999999999999999999999999999999974
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=9.4e-38 Score=309.85 Aligned_cols=282 Identities=17% Similarity=0.219 Sum_probs=199.2
Q ss_pred CCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhhcCCCCCCeEEeeeCCeE--Ee------------eccceeeE
Q 016125 25 RSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAI--VL------------NLEHIKAI 90 (394)
Q Consensus 25 ~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~I--lv------------~le~i~~I 90 (394)
.+...|+.+++..+.+.. ..|.+.+|||+..++++... .++|+++..++++ ++ ..+++.++
T Consensus 68 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~ied~l~~-~~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~~~ 142 (363)
T 2iub_A 68 SSTPTWINITGIHRTDVV----QRVGEFFGIHPLVLEDILNV-HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLI 142 (363)
T ss_dssp CSSCEEEEEECTTCHHHH----HHHHHHTTCCHHHHHHHHCC-SSCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHH----HHHHHHcCcChhHHHHHhCC-CCCCeEEEECCEEEEEEEeeeecccccccceEEEEEE
Confidence 446789999877644444 67788999999999995443 6899999999875 22 34578999
Q ss_pred eecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 016125 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (394)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~ 170 (394)
++.|+|++|...+. +.++.+++|+....+..+ ..+++++ +.++++.+++.+...++
T Consensus 143 l~~~~liTv~~~~~---~~~~~v~~rl~~~~~~~~---------------~~~~~~l------l~~lld~ivd~y~~~l~ 198 (363)
T 2iub_A 143 LTKNCVLMFQEKIG---DVFDPVRERIRYNRGIIR---------------KKRADYL------LYSLIDALVDDYFVLLE 198 (363)
T ss_dssp EETTEEEEEESSSC---CSCHHHHHHHHTTCTTTT---------------TSCHHHH------HHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEEeCCC---chHHHHHHHHHhcCCccc---------------cCCHHHH------HHHHHHHHHHHHHHHHH
Confidence 99999999987643 467888888865432221 1112222 33444444444444555
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCC
Q 016125 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWF 250 (394)
Q Consensus 171 ~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~ 250 (394)
.+++.++.+++++.++..+..+++|+.+|+++..+++.++|.++++++|.+.+....
T Consensus 199 ~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~----------------------- 255 (363)
T 2iub_A 199 KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLI----------------------- 255 (363)
T ss_dssp HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSC-----------------------
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----------------------
Confidence 677777777787777666677999999999999999999999999999987543210
Q ss_pred CCCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHH
Q 016125 251 PASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELF 330 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~ 330 (394)
.++....++....++..+.+.++.+++.++.+.+.+...+++++|++|| +
T Consensus 256 ---------------------------~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk---~ 305 (363)
T 2iub_A 256 ---------------------------EKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMK---V 305 (363)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 1122222333344456678888888899999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 331 LSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 331 LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
||++|++|+|+|||||+|||||++|||.+|+||||++++++ +++++++++||||||||
T Consensus 306 LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m----~~i~~~~~~~Fkrk~Wl 363 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVM----GVIAVIMVVYFKKKKWL 363 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC--------------CHHHHHHH----HHHHHHHHTTTTSCC--
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHH----HHHHHHHHHHHHHcccC
Confidence 99999999999999999999999999999999999988854 45557899999999997
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.1e-36 Score=297.56 Aligned_cols=282 Identities=16% Similarity=0.159 Sum_probs=217.4
Q ss_pred CCCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhh-hcCCCCCCeEEeeeCCeEEe-----------eccceeeEe
Q 016125 24 TRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIVL-----------NLEHIKAII 91 (394)
Q Consensus 24 ~~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~-ld~~~~~~~~I~~R~~~Ilv-----------~le~i~~II 91 (394)
.....-|+.+.+.-+.+ ...|.+++|||+..+++ +++ .++|+++..++.+++ ..+++.+++
T Consensus 46 ~d~~~vWIdl~~Pt~~E-----~~~l~~~~~l~~~~~ed~l~~--~~rpk~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l 118 (339)
T 4ev6_A 46 EDYRLIWIDCYDPKDEE-----LYKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYI 118 (339)
T ss_dssp SSCSCEEEEEESCCHHH-----HHHHHHHHTCCHHHHHHHHCT--TCCCEEEEETTEEEEECCCCCCTTTCCCCCCEEEE
T ss_pred cCCCEEEEEeCCCCHHH-----HHHHHHHHCcCHhHHHHhhCC--ccCCeEEEECCEEEEEEecCccCCCcceEEEEEEE
Confidence 34557799887654332 35788999999999999 555 688999999987432 345899999
Q ss_pred ecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 016125 92 TSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTE 171 (394)
Q Consensus 92 ~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~ 171 (394)
+++++++|+..+. +.++.+++++......... ..+++++ +..+++.+++.+...++.
T Consensus 119 ~~~~lITv~~~~~---~~~~~~~~~~~~~~~~~~~--------------~~~~~~l------l~~lld~ivd~~~~~l~~ 175 (339)
T 4ev6_A 119 KNNLLLTIHSDKI---KAIGRLHKLISTKKPRIVF--------------ERGIGFL------LYHILNEITRSYSRILMN 175 (339)
T ss_dssp ETTEEEEEESSCC---HHHHHHHHHSSSSSSCCCC--------------CSCHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred ECCeeEEeecCCc---chhHHHHHHHHcCCCcccc--------------ccCHHHH------HHHHHHHHHHHHHHHHHH
Confidence 9999999987644 5788999998766542210 1112222 444555555555555566
Q ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCCC
Q 016125 172 LETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFP 251 (394)
Q Consensus 172 le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~ 251 (394)
+++.+..+++++.++.+++.++++..+|+++..+++.+.|.++++..+.+.+....
T Consensus 176 l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~------------------------ 231 (339)
T 4ev6_A 176 LEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT------------------------ 231 (339)
T ss_dssp HHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTB------------------------
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccccc------------------------
Confidence 88887777787777777788999999999999999999999999999886543210
Q ss_pred CCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHH
Q 016125 252 ASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFL 331 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~L 331 (394)
.++....++....++..+.+.++.+++.++.+.+.+...+++++|++|| +|
T Consensus 232 --------------------------~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk---~L 282 (339)
T 4ev6_A 232 --------------------------TKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMK---IL 282 (339)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 0122223444455667778888889999999999999999999999999 79
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 332 SSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 332 Ti~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
|++|++|+|+|||||+|||||++|||.+|+||||++++++ +++++++++||||||||
T Consensus 283 Tiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m----~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALM----VVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHH----HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHH----HHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999988854 45557899999999997
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=3.8e-16 Score=149.11 Aligned_cols=219 Identities=14% Similarity=0.132 Sum_probs=151.6
Q ss_pred CCCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhh-hcCCCCCCeEEeeeCCeE--Ee---------eccceeeEe
Q 016125 24 TRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAI--VL---------NLEHIKAII 91 (394)
Q Consensus 24 ~~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~-ld~~~~~~~~I~~R~~~I--lv---------~le~i~~II 91 (394)
.....-|+.+.+....+ ...|.++|||||..+++ +++ .++|+++..++.+ ++ ..+++++++
T Consensus 46 ~d~~~vWIdl~~Pt~eE-----l~~l~~~f~lh~l~leD~l~~--~~rpKie~~~d~~fivl~~~~~~~~~~t~~v~i~l 118 (280)
T 4egw_A 46 EDYRLIWIDCYDPKDEE-----LYKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYI 118 (280)
T ss_dssp TSSSCEEEEEESCCHHH-----HHHHHHHHTCCHHHHHHHTCT--TCCCEEECCSSSEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCCeEEEEEeCCCCHHH-----HHHHHHHHCcCHHHHHHHhCc--ccCceEEEECCEEEEEEEeccccccceeeeEEEEE
Confidence 34567899997654332 35788999999999999 555 6899999999864 33 345899999
Q ss_pred ecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 016125 92 TSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTE 171 (394)
Q Consensus 92 ~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~ 171 (394)
++++|++|+.... +.++.+++|+....+.... ..+++++.| .+|+.+++.+...++ .
T Consensus 119 ~~~~lITv~~~~~---~~~~~v~~~l~~~~~~~~~--------------~~g~~~ll~--~lld~ivd~y~~~l~----~ 175 (280)
T 4egw_A 119 KNNLLLTIHSDKI---KAIGRLHKLISTKKPRIVF--------------ERGIGFLLY--HILNEITRSYSRILM----N 175 (280)
T ss_dssp ETTEEEEEESSCC---HHHHHHHHHHHHSCCSSSC--------------TTTTTHHHH--HHHHHHHHHHHHHHH----H
T ss_pred ECCEEEEEecCCc---chHHHHHHHHHhcCccccc--------------ccCHHHHHH--HHHHHHHHHHHHHHH----H
Confidence 9999999987754 5789999998766543210 233555544 337777766666655 4
Q ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCCC
Q 016125 172 LETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFP 251 (394)
Q Consensus 172 le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~ 251 (394)
+++.+..+++.+.++.++..+.+|+.+|++|..|++.++|.|+++..|.+.+.... +
T Consensus 176 i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~----~------------------- 232 (280)
T 4egw_A 176 LEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----T------------------- 232 (280)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC----C-------------------
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccC----C-------------------
Confidence 77777777888888888888999999999999999999999999999987543210 0
Q ss_pred CCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 016125 252 ASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQI-DS---TLNKLSTLREYIDDTEDYINIQLDNHRNQLIQ 326 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~v-d~---~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmk 326 (394)
++ ...|++++ ++ +.+.++.+++.+..+.+.+....++++|++||
T Consensus 233 ---------------------------~~----~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~iMK 280 (280)
T 4egw_A 233 ---------------------------KE----DRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMK 280 (280)
T ss_dssp ---------------------------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred ---------------------------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11 23566665 44 45556666666666666666666789999887
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.62 E-value=3.7e-14 Score=133.86 Aligned_cols=166 Identities=10% Similarity=0.052 Sum_probs=121.0
Q ss_pred CCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhhcCCCCCCeEEeeeCCeEEe--------------eccceeeE
Q 016125 25 RSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVL--------------NLEHIKAI 90 (394)
Q Consensus 25 ~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilv--------------~le~i~~I 90 (394)
++...|+.+++.-. .. ...|.+.+|||+..+.++... .++|++...++++.+ .+++++++
T Consensus 39 ~~~~~Wi~l~~p~~-~e----~~~l~~~~~l~~l~~ed~~~~-~~rpk~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~~ 112 (264)
T 3nvo_A 39 SQHPCWLHLNYTHP-DS----ARWLASTPLLPNNVRDALAGE-SSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLY 112 (264)
T ss_dssp TTSCEEEEEETTSH-HH----HHHHHHCTTSCTTTHHHHTTC-CCSCEEEEETTEEEEEEECC----------CCEEEEE
T ss_pred CCCCEEEEeCCCCH-HH----HHHHHhccCCCHHHHHHHhCC-CCCCceEEECCEEEEEEEecccCCCCCCcceEEEEEE
Confidence 56689999987432 22 366788999999999995543 789999999997533 34689999
Q ss_pred eecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 016125 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (394)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~ 170 (394)
++.++|++|+.... ++++.+++|+..+.+. .+++++ +.++++.+++.+...++
T Consensus 113 l~~~~lITv~~~~~---~~~~~v~~rl~~~~~~------------------~~~~~l------l~~lld~ivd~y~~~l~ 165 (264)
T 3nvo_A 113 MDERFIVSTRQRKV---LALDDVVSDLQEGTGP------------------VDCGGW------LVDVCDALTDHASEFIE 165 (264)
T ss_dssp ECSSEEEEEESSCC---HHHHHHHHHHHTTCSC------------------SSHHHH------HHHHHHHHHHHHHHHHH
T ss_pred EeCCEEEEEecCCc---CcHHHHHHHHHhCCCC------------------CCHHHH------HHHHHHHHHHHHHHHHH
Confidence 99999999997643 6889999998654321 112233 44455555555555555
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 016125 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (394)
Q Consensus 171 ~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~ 224 (394)
.+++.+..+++.+.++ .+..+.+|+.+||++..|++.++|.++++++|.+.+.
T Consensus 166 ~l~~~id~lE~~l~~~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 218 (264)
T 3nvo_A 166 ELHDKIIDLEDNLLDQ-QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERL 218 (264)
T ss_dssp HHHHHHHHHTTC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCC
Confidence 6777777777766666 6678999999999999999999999999999987653
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.50 E-value=9.6e-13 Score=123.37 Aligned_cols=202 Identities=8% Similarity=0.041 Sum_probs=137.9
Q ss_pred EEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhhcCCCCCCeEEeeeCC-eE--Eeec------------cceeeEeec
Q 016125 29 SWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQ-AI--VLNL------------EHIKAIITS 93 (394)
Q Consensus 29 ~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~-~I--lv~l------------e~i~~II~~ 93 (394)
.|+.+++... ... ..|.+. |||+..+.++... .++|++...++ ++ +++. ..++++++.
T Consensus 32 ~Wi~l~~p~~-~e~----~~l~~~-~l~~l~~ed~l~~-~~rpk~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~~ 104 (252)
T 3ck6_A 32 HWYHCERLHP-DIR----GWLEDN-HVPRATVDHLLAD-ESRPSFHPLDDDNFMLILRGINMNENASPEDMLSIRILYFQ 104 (252)
T ss_dssp EEEEEETTCT-THH----HHHHHT-TCCHHHHHHHHCS-SCCCEEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEET
T ss_pred EEEEecCCCH-HHH----HHHHHc-CCCHHHHHHHhCC-CCCCceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEeC
Confidence 9999988653 222 567788 9999999995543 78999999999 76 3332 246779999
Q ss_pred CeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 94 EEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELE 173 (394)
Q Consensus 94 d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~le 173 (394)
++|++++.... +.++.+++|+..+.+. .++.++-| .+++.+++.+... ++.++
T Consensus 105 ~~lITvr~~~~---~~~~~v~~~l~~~~~~------------------~~~~~ll~--~lld~ivd~y~~~----l~~l~ 157 (252)
T 3ck6_A 105 GALISTRKIPS---RAIMEIRQALAEHKGP------------------KSLASLLN--QIIEGLNGKIDLY----LDTIE 157 (252)
T ss_dssp TEEEEEESSCC---HHHHHHHHHHHTTCSC------------------SSHHHHHH--HHHHHHHHHHHHH----HHHHH
T ss_pred CEEEEEeCCCc---chHHHHHHHHHhCCCC------------------CCHHHHHH--HHHHHHHHHHHHH----HHHHH
Confidence 99999997743 5788999998554321 11222222 3355555555444 44566
Q ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCCCCC
Q 016125 174 TAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPAS 253 (394)
Q Consensus 174 ~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~ 253 (394)
+.+..+++. ...+.+|+.+||++..|++.++|+|+++.+|.+.+.. . ...
T Consensus 158 ~~id~lE~~------~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~-~----~~~------------------- 207 (252)
T 3ck6_A 158 ETLNEFDVN------DESTYNHIAAQKALISIKRFIRPQQYAIRDLIESESE-L----VTS------------------- 207 (252)
T ss_dssp HHHHTCCTT------CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-H----HHT-------------------
T ss_pred HHHHHHHcC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-C----CHH-------------------
Confidence 655443332 2357889999999999999999999999999986543 1 111
Q ss_pred CCcccccccccccccccccCCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 016125 254 PTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQ----IDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLI 325 (394)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~----vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lm 325 (394)
...|+++ +..+.+.++.+++.+..+.+.+....++++|++|
T Consensus 208 -------------------------------~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 208 -------------------------------RPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp -------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1244544 4566778888888888888888888899999876
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.38 E-value=1.6e-12 Score=122.91 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=119.2
Q ss_pred CCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhhcCCCCCCeEEeeeCCeE--Ee------------eccceeeE
Q 016125 25 RSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAI--VL------------NLEHIKAI 90 (394)
Q Consensus 25 ~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~I--lv------------~le~i~~I 90 (394)
++...|+.+++..+...+ ..|.+.+|||+..+.++... .++|++...++++ ++ ..+++.++
T Consensus 59 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~~ed~l~~-~~rpk~e~~~d~lfivl~~~~~~~~~~~~~~~~v~~~ 133 (269)
T 2bbh_A 59 SSTPTWINITGIHRTDVV----QRVGEFFGTHPLVLEDILNV-HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLI 133 (269)
T ss_dssp CSSCEEEEEECTTCHHHH----HHHHHHHTCCHHHHHHHHCT-TCCCEEEECSSEEEEEEEEEECCC--CCCEEEEEEEE
T ss_pred CCCeEEEEecCCCCHHHH----HHHHHHcCCCHhHHHHHhCc-CCCceEEEECCEEEEEEEeeeecCCcCceeEEEEEEE
Confidence 345789999887555544 67888999999999995543 6899999999975 33 23468999
Q ss_pred eecCeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 016125 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (394)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~ 170 (394)
++.++|++|..... +.++.+++|+....+..+ ..+++++.| .+|+.+++.+...++
T Consensus 134 l~~~~lITv~~~~~---~~~~~v~~rl~~~~~~~~---------------~~~~~~ll~--~lld~ivd~y~~~l~---- 189 (269)
T 2bbh_A 134 LTKNCVLMFQEKIG---DVFDPVRERIRYNRGIIR---------------KKRADYLLY--SLIDALVDDYFVLLE---- 189 (269)
T ss_dssp EETTEEEEEESSSC---CSCHHHHHHHHTTCTTGG---------------GSCHHHHHH--HHHHHHHHHHHHHHH----
T ss_pred EECCEEEEEECCCC---CcHHHHHHHHHhcCCchh---------------hCCHHHHHH--HHHHHHHHHHHHHHH----
Confidence 99999999987643 356788888866532211 112233333 346666666655554
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016125 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDD 222 (394)
Q Consensus 171 ~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~ 222 (394)
.+++.+..+++.+.++..+..+.+|+.+|+.+..|++.++|+++++++|.+.
T Consensus 190 ~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 241 (269)
T 2bbh_A 190 KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 241 (269)
T ss_dssp HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666666666666665556789999999999999999999999999999874
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.37 E-value=2.7e-12 Score=121.32 Aligned_cols=169 Identities=14% Similarity=0.166 Sum_probs=124.1
Q ss_pred CCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhhcCCCCCCeEEeeeCCeE--Ee---------eccceeeEeec
Q 016125 25 RSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAI--VL---------NLEHIKAIITS 93 (394)
Q Consensus 25 ~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~I--lv---------~le~i~~II~~ 93 (394)
.+...|+.+++..+.... ..|.+.+|||+..+.++... .++|+++..++++ ++ ..+++.++++.
T Consensus 64 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~~ed~l~~-~~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~~ 138 (266)
T 2hn1_A 64 LNKKLWIDVVGVHDESLI----AKICEFLGIHPLAAEDILNT-AQRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLKK 138 (266)
T ss_dssp TTSEEEEEECCCCCHHHH----HHHHHTTTCCHHHHHHHHBT-TCCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEET
T ss_pred CCCeEEEEeCCCCCHHHH----HHHHHHcCCCHhHHHHHhCC-CCCCeEEEECCEEEEEEEeccccCccceEEEEEEEEC
Confidence 456889999887555544 67888999999999995543 6899999999975 33 34678999999
Q ss_pred CeEEEeCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 94 EEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELE 173 (394)
Q Consensus 94 d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~le 173 (394)
|+|++|..... +.++.+++|+... +..+ ..+++++.| .+|+.+++.+... ++.++
T Consensus 139 ~~lITv~~~~~---~~~~~v~~rl~~~-~~~~---------------~~~~~~ll~--~lld~ivd~y~~~----l~~i~ 193 (266)
T 2hn1_A 139 NLVATFEEREY---WILDSIRSRLKSG-GRMR---------------KLAGDYLAY--TILDAVVDSYFEA----LLKIS 193 (266)
T ss_dssp TEEEEEESSSS---CSTHHHHHHHHSS-SHHH---------------HSCHHHHHH--HHHHHHHHHHHHH----HHHHH
T ss_pred CEEEEEEcCCC---ChHHHHHHHHHhC-Cchh---------------hcCHHHHHH--HHHHHHHHHHHHH----HHHHH
Confidence 99999987643 3568888888654 2111 012233323 2355555555554 44577
Q ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 016125 174 TAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (394)
Q Consensus 174 ~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~ 224 (394)
+.+..+++.+.++.. ..+++|+.+|+++..|++.++|+++++++|.+.+.
T Consensus 194 ~~id~lE~~l~~~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 243 (266)
T 2hn1_A 194 DEIEVLEDEVVSGDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVEH 243 (266)
T ss_dssp HHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777777777766556 77899999999999999999999999999997653
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=95.75 E-value=0.78 Score=44.43 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 016125 279 EELEMLLEAYFMQI-DSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWN 357 (394)
Q Consensus 279 ~elE~LLE~y~~~v-d~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~~~pE 357 (394)
..+..-...|++++ |++.+..+.+..+.+.+..+.+.+++...|++++ ++-++|++-+++...+=+-|. + .|-.
T Consensus 253 ~~~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~---imk~LTiit~IflP~T~IaGi-y-GMNf 327 (363)
T 2iub_A 253 PLIEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNE---VMKVLTIIATIFMPLTFIAGI-Y-GMNF 327 (363)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTS-C-C---
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh-h-cccC
Confidence 44445567789997 8888888888888888888999999999999888 999999999999999999996 2 2322
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016125 358 ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 390 (394)
Q Consensus 358 ~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 390 (394)
..-|.. -|-.+. .++++++.++.++.+.+=|
T Consensus 328 ~~mPel-~~~~Gy-~~~l~~m~~i~~~~~~~Fk 358 (363)
T 2iub_A 328 EYMPEL-RWKWGY-PVVLAVMGVIAVIMVVYFK 358 (363)
T ss_dssp ------------C-HHHHHHHHHHHHHHHTTTT
T ss_pred CCCCcc-cCcHHH-HHHHHHHHHHHHHHHHHHH
Confidence 223432 233332 2234555555555544433
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=92.90 E-value=6 Score=37.65 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=68.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCccccCc
Q 016125 283 MLLEAYFMQI-DSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHG 361 (394)
Q Consensus 283 ~LLE~y~~~v-d~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~ 361 (394)
.-...|++++ +++.+..+.+..+.+.+..+.+.+++..-|+.++ ++-++|.+-+++...+=+-|. -.|-...-|
T Consensus 233 ~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~---~mk~LTiit~IflP~T~IaGi--yGMNf~~mP 307 (339)
T 4ev6_A 233 KEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQ---IMKILTMVTTIFAVPMWITGI--YGMNFSYLP 307 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSSHHHHHHHH--TTCCCSCCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh--ccCcCCCCC
Confidence 3456677776 7777777777777777778888888888888877 999999998888888888885 223222234
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 362 Y-MFKWVVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 362 ~-gF~~v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
. ...|... +++++++++.++.+.+=|+
T Consensus 308 el~~~~gy~---~~l~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 308 LANNPQGFW---LVMALMVVIIMIFVYIFRR 335 (339)
T ss_dssp TSSCTTHHH---HHHHHHHHHHHHHHHHHHT
T ss_pred CccCchHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3 2333333 2456666666666665544
No 11
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=90.20 E-value=2.2 Score=39.45 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 153 ALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (394)
Q Consensus 153 ~LE~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~l 219 (394)
++.++++.+++.+. .+-+.+..-++++++.+....-. ..-+++..+++.+-.+|.++.-+
T Consensus 157 ll~~lld~ivd~y~----~~l~~i~~~id~lE~~l~~~~~~---~~l~~i~~lrr~l~~lrr~l~p~ 216 (280)
T 4egw_A 157 LLYHILNEITRSYS----RILMNLEDELEELEDKLLAGYDR---EVMEKILGLRKTLVYFHKSLIAN 216 (280)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTTCCCH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHHHHHhhH
Confidence 45555555554433 23334444555666655443322 23456777888877777776644
No 12
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=77.77 E-value=22 Score=30.99 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016125 155 EVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVR-KLKSAMTRLTARVQKVRDELEQLLD 221 (394)
Q Consensus 155 E~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~-~lk~~L~~l~~~v~~~re~l~~ll~ 221 (394)
...+......+...++.+...+.+..+++..++.. ..+.++ .+++.+..++.++.|.++.|...+.
T Consensus 61 ~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~-~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~ 127 (191)
T 1nfn_A 61 RALMDETMKELKAYKSELEEQLTPVAEETRARLSK-ELQAAQARLGADMEDVCGRLVQYRGEVQAMLG 127 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----------CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444444444444444333322 233343 4677888888888888887766553
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=74.21 E-value=4.7 Score=26.64 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhC
Q 016125 376 AVTFVFIMSYARFKG 390 (394)
Q Consensus 376 ~~l~~~~~~~frrk~ 390 (394)
+++.++.++|+|||+
T Consensus 25 ~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 25 LVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhhH
Confidence 344445555556554
No 14
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=71.30 E-value=15 Score=33.26 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 016125 198 LKSAMTRLTARVQKVRDELEQLLD 221 (394)
Q Consensus 198 lk~~L~~l~~~v~~~re~l~~ll~ 221 (394)
..+++..+++.+-.+|..+.-+.+
T Consensus 185 ~l~~l~~lrr~l~~lrr~l~p~~~ 208 (264)
T 3nvo_A 185 PRGFLALLRKQLIVMRRYMAPQRD 208 (264)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356788999999999888876653
No 15
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=68.78 E-value=14 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016125 291 QIDSTLNKLSTLREYIDDTEDYINIQLDNH 320 (394)
Q Consensus 291 ~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~ 320 (394)
...++.+.+..+.+.++...|.....++..
T Consensus 211 ~~rdv~d~~~~~~e~i~~~re~~~~l~d~~ 240 (252)
T 3ck6_A 211 QYRFAHNNITRINETIEFYLGEVALFQDEI 240 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888877776665543
No 16
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=68.70 E-value=4.1 Score=33.19 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=26.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016125 360 HGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 360 ~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 391 (394)
..+.|.++++++.+.++.++.+|+.|.|-||.
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 45667778887777888889999999999874
No 17
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=68.11 E-value=8.2 Score=25.48 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhC
Q 016125 377 VTFVFIMSYARFKG 390 (394)
Q Consensus 377 ~l~~~~~~~frrk~ 390 (394)
++.++.++|+|||+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 33444455555554
No 18
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=67.28 E-value=12 Score=21.03 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 195 VRKLKSAMTRLTARVQKVRDELEQL 219 (394)
Q Consensus 195 L~~lk~~L~~l~~~v~~~re~l~~l 219 (394)
++++|.+..+++..++.+++...++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 4678888899999888888877654
No 19
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=63.29 E-value=13 Score=24.49 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 016125 372 AIFCAVTFVFIMSYARFKGL 391 (394)
Q Consensus 372 ~~~~~~l~~~~~~~frrk~w 391 (394)
+++.+++.++..+|+|||+-
T Consensus 21 vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhheehhhh
Confidence 33445555667788888864
No 20
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=55.52 E-value=8.1 Score=24.63 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhC
Q 016125 376 AVTFVFIMSYARFKG 390 (394)
Q Consensus 376 ~~l~~~~~~~frrk~ 390 (394)
+++.+++.+||+|||
T Consensus 24 v~li~~l~~~~~rrr 38 (38)
T 2k1k_A 24 AALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHeecC
Confidence 333444455555543
No 21
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=50.81 E-value=54 Score=27.81 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 016125 278 VEELEMLLEAYFMQI-DSTLNKLSTLRE 304 (394)
Q Consensus 278 ~~elE~LLE~y~~~v-d~~~~~l~~l~e 304 (394)
.+++...++.|...+ ..+...++.|+.
T Consensus 130 ~EelR~kl~P~~eeL~~~~~~~~eeLr~ 157 (165)
T 1gs9_A 130 TEELRVRLASHLRKLRKRLLRDADDLQK 157 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455555666766665 334444444443
No 22
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=50.62 E-value=33 Score=22.31 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016125 365 KWVVIFTAIFCAVTFVFIMSYARFKGLV 392 (394)
Q Consensus 365 ~~v~~~~~~~~~~l~~~~~~~frrk~wl 392 (394)
+|++++++++++.+.+.+.+.+++-|+|
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~GFF 37 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKVGFF 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3444445555555555555555555555
No 23
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=49.22 E-value=20 Score=21.02 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 196 RKLKSAMTRLTARVQKVRDELEQL 219 (394)
Q Consensus 196 ~~lk~~L~~l~~~v~~~re~l~~l 219 (394)
..+|++|+.++..|..+-+.|+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467889999988888877777664
No 24
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=46.68 E-value=83 Score=23.01 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 161 ICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRD 214 (394)
Q Consensus 161 ~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re 214 (394)
-+..|+..++.|......++.+..+. =..||+++..|+..+.+.++
T Consensus 8 Kv~~LE~sld~LQTrfARLLaEy~ss--------Q~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 8 KVTRMESSVDLLQTRFARILAEYESM--------QQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCC
Confidence 34555555555665555555444331 24679999999999988554
No 25
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=46.26 E-value=18 Score=24.87 Aligned_cols=7 Identities=0% Similarity=-0.107 Sum_probs=4.2
Q ss_pred HHHHHhC
Q 016125 384 SYARFKG 390 (394)
Q Consensus 384 ~~frrk~ 390 (394)
.||||++
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 5666654
No 26
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.10 E-value=25 Score=24.18 Aligned_cols=7 Identities=0% Similarity=0.121 Sum_probs=4.0
Q ss_pred HHHHHhC
Q 016125 384 SYARFKG 390 (394)
Q Consensus 384 ~~frrk~ 390 (394)
.||||++
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 5666654
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.42 E-value=2e+02 Score=29.01 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016125 289 FMQIDSTLNKLSTLREYIDDTEDYINIQLDN 319 (394)
Q Consensus 289 ~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~ 319 (394)
+.++..+.+.|+.++..|..+|--|++++..
T Consensus 130 lsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666654
No 28
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=43.34 E-value=60 Score=30.45 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016125 197 KLKSAMTRLTARVQKVRDELEQLLDDD 223 (394)
Q Consensus 197 ~lk~~L~~l~~~v~~~re~l~~ll~~d 223 (394)
.+...+..++.++.|.++.+...+..+
T Consensus 111 ~L~~dlEelR~~L~Py~~el~~~l~~~ 137 (307)
T 2l7b_A 111 RLGADMEDVCGRLVQYRGEVQAMLGQS 137 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999888877644
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.92 E-value=2e+02 Score=27.73 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhh
Q 016125 155 EVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK 234 (394)
Q Consensus 155 E~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~ 234 (394)
|..+..+.+.|+.++..|...+ ..++.+|+.|+..|..++..++.+-..|+--.+.=.-=...++..+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V------------~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~ 175 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKV------------IEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHK 175 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhh
Q ss_pred hcCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 235 MAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLS 300 (394)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~ 300 (394)
.. +|.|..|..++.+...
T Consensus 176 vD------------------------------------------------~e~ye~qqKQL~qv~a 193 (390)
T 1deq_A 176 VD------------------------------------------------LEDYKNQQKQLEQVIA 193 (390)
T ss_pred cc------------------------------------------------HHHHHHHHHHHHhhhh
No 30
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=38.91 E-value=96 Score=26.47 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Q 016125 150 EFRA-LEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMAD 228 (394)
Q Consensus 150 el~~-LE~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~ 228 (394)
+++. |+-.+..+-..+...++.+.....+..+++.+++ +..+-.|+.++.|+-+.+..-++
T Consensus 93 e~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~-----------~~~~e~Lr~~L~p~~e~lr~~l~------- 154 (185)
T 3r2p_A 93 EVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGA-----------RQKLHELQEKLSPLGEEMRDRAR------- 154 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHTTTTTTSHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HHHhhhhcCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 016125 229 LYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQI-DSTLNKLSTLREY 305 (394)
Q Consensus 229 m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~v-d~~~~~l~~l~e~ 305 (394)
...+++-..+..|..++ +.+-+.++.|++.
T Consensus 155 -----------------------------------------------~~~e~lk~~l~Py~ee~k~kl~~~leeLke~ 185 (185)
T 3r2p_A 155 -----------------------------------------------AHVDALRTHLAPYSDELRQRLAARLEALKEN 185 (185)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred -----------------------------------------------HHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
No 31
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=37.54 E-value=88 Score=28.90 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHH
Q 016125 154 LEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARV 209 (394)
Q Consensus 154 LE~iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v 209 (394)
||++-......+-+++..|...+..++.+|...+.. .-+|+..|+.++..|+..+
T Consensus 26 Le~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~-~~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 26 LECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHS-FSFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 677776666667788888999998898888764322 1234445555555444444
No 32
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=36.97 E-value=2.4e+02 Score=25.66 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 016125 277 DVEELEMLLEAYFMQI-DSTLNKLSTLREYIDD 308 (394)
Q Consensus 277 ~~~elE~LLE~y~~~v-d~~~~~l~~l~e~i~~ 308 (394)
..+++-.-|..|...+ +.+.+.++.+++.+.-
T Consensus 89 ~~eeLr~~L~p~~eelr~kl~~~veelk~~L~P 121 (273)
T 3s84_A 89 NADSLQASLRPHADELKAKIDQNVEELKGRLTP 121 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHh
Confidence 3445555566666665 4444555555544433
No 33
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=36.70 E-value=71 Score=19.73 Aligned_cols=29 Identities=7% Similarity=-0.125 Sum_probs=15.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 360 HGYMFKWVVIFTAIFCAVTFVFIMSYARF 388 (394)
Q Consensus 360 ~~~gF~~v~~~~~~~~~~l~~~~~~~frr 388 (394)
++-|-+.++.+..++.++.+.++++.|--
T Consensus 4 ~l~GTl~~V~ilg~~I~i~W~~vf~lFl~ 32 (34)
T 3s8f_C 4 KPKGALAVILVLTLTILVFWLGVYAVFFA 32 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceehHHHHHHHHHHHHHHHHHeeeec
Confidence 56666555554444445555555555543
No 34
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=35.10 E-value=1e+02 Score=26.60 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 016125 278 VEELEMLLEAYFMQI-DSTLNKLSTLREY 305 (394)
Q Consensus 278 ~~elE~LLE~y~~~v-d~~~~~l~~l~e~ 305 (394)
.+++..-|..|..++ ..+...++.+++.
T Consensus 130 ~Eelr~~L~Py~eelr~kl~~~~eeLr~~ 158 (191)
T 1nfn_A 130 TEELRVRLASHLRKLRKRLLRDADDLQKR 158 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444455555444 3334444444433
No 35
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=34.74 E-value=1.2e+02 Score=22.68 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 016125 158 LEAICSFLAARTTELETAAYPALDELTSKISSR-NLDRVRKLKSAMTRLTA----RVQKVRDELEQLLD 221 (394)
Q Consensus 158 L~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~~-~L~~L~~lk~~L~~l~~----~v~~~re~l~~ll~ 221 (394)
|+.+...|+.-+..+...+..++++|..+++.. .|-++...-.+.+-++. .++.++|....+++
T Consensus 12 Ld~v~~~f~~ga~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~sI~~ 80 (85)
T 2ca5_A 12 LSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAILE 80 (85)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999999999999999999876543 34445444445444444 34445666555554
No 36
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=31.80 E-value=4.5e+02 Score=27.18 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=6.6
Q ss_pred HHHHhhcccCCCCC
Q 016125 342 SLVAGIFGMNIPYT 355 (394)
Q Consensus 342 T~IaGifGMN~~~~ 355 (394)
.+.+|+||-.+.++
T Consensus 519 ~~~~~~~~~~~~~~ 532 (695)
T 2j69_A 519 KWAMGLLSLSKGNL 532 (695)
T ss_dssp HHHHTCCC------
T ss_pred HHHHhhcccccCCc
Confidence 57889999777544
No 37
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=26.15 E-value=2.1e+02 Score=21.86 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 016125 191 NLDRVRKLKSAMTRLTARVQKV 212 (394)
Q Consensus 191 ~L~~L~~lk~~L~~l~~~v~~~ 212 (394)
-..+|+..|++|..+++.++.+
T Consensus 72 ~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 72 YSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888877766553
No 38
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=26.05 E-value=1.1e+02 Score=23.24 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125 157 ALEAICSFLAARTTELETAAYPALDELTSKISS-RNLDRVRKLKSAMTRLTARVQKVRDEL 216 (394)
Q Consensus 157 iL~~~~~~Le~~~~~le~~~~~~ld~L~~~~~~-~~L~~L~~lk~~L~~l~~~v~~~re~l 216 (394)
-|+.+...|+..+..+...+..++++|..+++. ..|-++...-.+.+-++..-..+-.++
T Consensus 17 ~Ld~vs~~f~~~a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQSntiKa~ 77 (92)
T 2g0u_A 17 YLTGIGRAFDDGVKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVKSM 77 (92)
T ss_dssp HHHHHHGGGCTTTHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788889999999999999999999887654 345566555555555555443333333
No 39
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=26.04 E-value=3.5e+02 Score=27.44 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=16.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHH
Q 016125 144 EDESPFEFRALEVALEAICSFLAAR 168 (394)
Q Consensus 144 ~~~lpfel~~LE~iL~~~~~~Le~~ 168 (394)
+...|| .++|.++...+..++.-
T Consensus 421 ~~f~~~--~~fe~lvk~qi~~l~~P 443 (608)
T 3szr_A 421 PGFVNY--RTFETIVKQQIKALEEP 443 (608)
T ss_dssp SCSSCT--HHHHHHHHHHHGGGHHH
T ss_pred CCCccH--HHHHHHHHHHHHHHHHH
Confidence 566787 56888888877666543
No 40
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.69 E-value=27 Score=21.76 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhC
Q 016125 376 AVTFVFIMSYARFKG 390 (394)
Q Consensus 376 ~~l~~~~~~~frrk~ 390 (394)
+.+.++...|.|||+
T Consensus 21 vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 21 LILVVVVGILIKRRR 35 (35)
T ss_dssp HHHTTTTTHHHHHCC
T ss_pred HHHHHHhheEEeecC
Confidence 344445667777764
No 41
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.94 E-value=2.1e+02 Score=21.60 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHH
Q 016125 192 LDRVRKLKSAMTR-LTARVQKVR 213 (394)
Q Consensus 192 L~~L~~lk~~L~~-l~~~v~~~r 213 (394)
..+|+..|+.|.. +++.++.+.
T Consensus 71 ~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 71 KAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777 777666543
No 42
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.12 E-value=2e+02 Score=18.97 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Q 016125 161 ICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTAR 208 (394)
Q Consensus 161 ~~~~Le~~~~~le~~~~~~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~ 208 (394)
-+..|+..++.+......++.+..+. =..+|+++..++..
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ss--------q~KlKqRit~lE~~ 45 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNAT--------QMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 34455555555555554444444321 23567777777764
Done!