Query 016127
Match_columns 394
No_of_seqs 385 out of 2092
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 3.4E-53 7.3E-58 402.6 27.7 265 128-393 7-271 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 6.5E-51 1.4E-55 398.4 33.5 295 94-393 2-297 (308)
3 PRK12895 ubiA prenyltransferas 100.0 2E-36 4.2E-41 292.7 29.4 258 104-384 2-262 (286)
4 PLN02809 4-hydroxybenzoate non 100.0 1.7E-35 3.8E-40 287.1 30.7 259 102-385 3-269 (289)
5 PRK12870 ubiA 4-hydroxybenzoat 100.0 1.1E-35 2.3E-40 289.1 28.5 260 101-385 5-271 (290)
6 TIGR01475 ubiA_other putative 100.0 4.2E-35 9.1E-40 284.2 31.0 264 105-390 2-268 (282)
7 PRK12874 ubiA prenyltransferas 100.0 8.2E-35 1.8E-39 282.9 32.9 269 100-390 3-276 (291)
8 PRK13106 ubiA prenyltransferas 100.0 3.9E-35 8.4E-40 285.8 30.1 268 99-388 9-282 (300)
9 PRK12873 ubiA prenyltransferas 100.0 1.6E-34 3.4E-39 279.9 28.1 264 102-388 4-279 (294)
10 PRK12886 ubiA prenyltransferas 100.0 5.8E-34 1.3E-38 277.1 32.0 264 102-389 5-272 (291)
11 PRK12847 ubiA 4-hydroxybenzoat 100.0 5.1E-34 1.1E-38 277.0 31.0 264 102-389 4-273 (285)
12 COG0382 UbiA 4-hydroxybenzoate 100.0 4.6E-34 1E-38 277.9 30.5 267 100-390 5-276 (289)
13 PRK12888 ubiA prenyltransferas 100.0 4.8E-34 1E-38 276.6 30.1 256 105-384 2-263 (284)
14 PRK12882 ubiA prenyltransferas 100.0 4.6E-34 9.9E-39 276.1 29.3 262 104-388 3-266 (276)
15 PRK12848 ubiA 4-hydroxybenzoat 100.0 6.2E-34 1.3E-38 276.0 29.9 262 102-388 2-269 (282)
16 PRK12884 ubiA prenyltransferas 100.0 1.1E-33 2.3E-38 273.9 29.3 256 103-383 2-258 (279)
17 PRK12392 bacteriochlorophyll c 100.0 1.8E-33 3.9E-38 277.4 30.6 255 102-372 9-271 (331)
18 PRK12878 ubiA 4-hydroxybenzoat 100.0 3E-33 6.4E-38 274.6 31.4 265 98-385 23-295 (314)
19 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.7E-33 3.7E-38 272.6 28.8 263 104-391 2-266 (279)
20 TIGR01476 chlor_syn_BchG bacte 100.0 9.7E-34 2.1E-38 274.8 26.9 222 106-340 1-223 (283)
21 PRK07566 bacteriochlorophyll/c 100.0 3.1E-33 6.7E-38 274.9 30.2 225 101-338 23-249 (314)
22 PRK12876 ubiA prenyltransferas 100.0 6.2E-33 1.3E-37 268.7 31.5 260 103-386 2-280 (300)
23 TIGR01474 ubiA_proteo 4-hydrox 100.0 5.3E-33 1.2E-37 269.3 30.5 261 105-389 1-268 (281)
24 PLN00012 chlorophyll synthetas 100.0 8.1E-33 1.8E-37 276.4 32.0 273 101-391 81-361 (375)
25 PRK12869 ubiA protoheme IX far 100.0 3E-32 6.6E-37 263.8 31.5 265 104-391 1-270 (279)
26 PRK04375 protoheme IX farnesyl 100.0 4.1E-32 8.8E-37 265.0 31.8 267 102-390 7-278 (296)
27 TIGR02056 ChlG chlorophyll syn 100.0 8E-32 1.7E-36 264.0 31.0 226 101-339 12-244 (306)
28 TIGR01473 cyoE_ctaB protoheme 100.0 4.1E-31 9E-36 256.0 31.3 265 106-391 1-271 (280)
29 PRK05951 ubiA prenyltransferas 100.0 3.8E-31 8.1E-36 258.1 29.4 268 103-386 2-278 (296)
30 PRK12883 ubiA prenyltransferas 100.0 4.3E-31 9.4E-36 255.5 29.5 205 104-330 2-206 (277)
31 PRK13595 ubiA prenyltransferas 100.0 3.7E-31 8E-36 254.8 28.6 259 101-389 8-270 (292)
32 PRK13362 protoheme IX farnesyl 100.0 1.6E-30 3.5E-35 254.3 32.4 269 102-392 10-285 (306)
33 PRK06080 1,4-dihydroxy-2-napht 100.0 2.2E-29 4.8E-34 245.4 30.7 226 104-345 2-235 (293)
34 KOG1381 Para-hydroxybenzoate-p 100.0 1.2E-31 2.7E-36 249.0 12.6 267 95-385 54-327 (353)
35 PRK12871 ubiA prenyltransferas 100.0 1.3E-28 2.8E-33 239.9 29.7 258 103-384 3-277 (297)
36 PRK13387 1,4-dihydroxy-2-napht 100.0 3.4E-28 7.4E-33 239.1 27.4 222 105-341 3-252 (317)
37 PRK13105 ubiA prenyltransferas 100.0 8.6E-27 1.9E-31 225.0 27.5 218 105-342 1-224 (282)
38 PLN02922 prenyltransferase 100.0 1.8E-26 3.9E-31 226.4 30.0 234 102-344 12-254 (315)
39 TIGR00751 menA 1,4-dihydroxy-2 100.0 1.9E-26 4E-31 223.5 27.4 216 113-343 1-229 (284)
40 PRK07419 1,4-dihydroxy-2-napht 100.0 4.9E-26 1.1E-30 222.2 29.2 226 101-343 8-239 (304)
41 PLN02776 prenyltransferase 100.0 1.5E-25 3.3E-30 220.4 30.0 257 111-391 1-264 (341)
42 PRK08238 hypothetical protein; 99.9 3.2E-26 7E-31 236.1 25.9 224 61-311 151-377 (479)
43 PF01040 UbiA: UbiA prenyltran 99.9 6.4E-26 1.4E-30 215.3 25.2 188 120-325 4-193 (257)
44 PRK12872 ubiA prenyltransferas 99.9 1.2E-25 2.6E-30 218.2 26.7 220 103-341 2-224 (285)
45 PRK12875 ubiA prenyltransferas 99.9 1.9E-25 4E-30 216.1 26.4 219 101-342 4-229 (282)
46 TIGR02235 menA_cyano-plnt 1,4- 99.9 7.3E-25 1.6E-29 212.5 28.4 217 108-341 2-224 (285)
47 COG1575 MenA 1,4-dihydroxy-2-n 99.9 1.5E-24 3.2E-29 208.1 26.5 223 104-341 7-239 (303)
48 COG0109 CyoE Polyprenyltransfe 99.9 5E-25 1.1E-29 210.8 22.9 269 101-391 14-287 (304)
49 PRK13591 ubiA prenyltransferas 99.9 5.8E-23 1.3E-27 198.9 25.6 174 151-341 65-242 (307)
50 PRK13592 ubiA prenyltransferas 99.9 1.8E-22 3.8E-27 194.0 24.2 216 103-336 3-231 (299)
51 PRK12324 phosphoribose diphosp 99.9 1.1E-21 2.5E-26 190.6 25.5 150 101-260 7-158 (295)
52 KOG1380 Heme A farnesyltransfe 99.5 1.7E-14 3.7E-19 138.0 7.4 259 102-390 91-359 (409)
53 KOG4581 Predicted membrane pro 99.3 9.9E-13 2.1E-17 120.6 5.0 230 102-346 58-297 (359)
54 COG1575 MenA 1,4-dihydroxy-2-n 89.5 1.2 2.5E-05 43.8 7.2 42 151-194 183-224 (303)
55 PRK13387 1,4-dihydroxy-2-napht 88.9 1.9 4E-05 42.8 8.3 48 149-199 194-242 (317)
56 PRK13591 ubiA prenyltransferas 88.4 2 4.4E-05 42.4 8.1 66 162-230 197-271 (307)
57 PRK12872 ubiA prenyltransferas 87.4 3.1 6.7E-05 40.2 8.7 33 153-185 170-203 (285)
58 PRK07419 1,4-dihydroxy-2-napht 87.3 2.8 6.1E-05 41.3 8.4 38 154-194 184-222 (304)
59 PLN02922 prenyltransferase 86.9 3.1 6.7E-05 41.3 8.5 42 151-195 195-237 (315)
60 PLN00012 chlorophyll synthetas 86.3 3.9 8.5E-05 41.5 9.0 33 153-185 261-294 (375)
61 TIGR01474 ubiA_proteo 4-hydrox 85.6 8 0.00017 37.5 10.5 37 150-186 166-203 (281)
62 PRK12884 ubiA prenyltransferas 84.9 8.4 0.00018 37.1 10.3 41 287-328 46-89 (279)
63 PRK07566 bacteriochlorophyll/c 84.2 4.7 0.0001 39.8 8.4 31 155-185 200-231 (314)
64 PRK12392 bacteriochlorophyll c 84.0 4.5 9.7E-05 40.4 8.1 34 152-185 188-222 (331)
65 PRK12875 ubiA prenyltransferas 83.6 11 0.00024 36.8 10.5 57 151-210 172-229 (282)
66 PRK13105 ubiA prenyltransferas 83.1 6.8 0.00015 38.2 8.8 55 153-210 169-224 (282)
67 TIGR02056 ChlG chlorophyll syn 83.0 6.3 0.00014 38.8 8.6 32 154-185 193-225 (306)
68 TIGR01475 ubiA_other putative 82.5 9.5 0.00021 36.9 9.6 35 150-184 164-199 (282)
69 TIGR02235 menA_cyano-plnt 1,4- 82.3 6.5 0.00014 38.4 8.3 43 152-197 169-212 (285)
70 PRK06080 1,4-dihydroxy-2-napht 81.9 7.3 0.00016 37.8 8.6 46 151-199 175-221 (293)
71 TIGR01476 chlor_syn_BchG bacte 81.2 7.9 0.00017 37.5 8.5 31 155-185 172-203 (283)
72 PRK12847 ubiA 4-hydroxybenzoat 81.1 8.3 0.00018 37.4 8.6 36 150-185 171-207 (285)
73 COG0382 UbiA 4-hydroxybenzoate 79.2 12 0.00025 36.4 9.0 36 285-320 54-90 (289)
74 PRK13592 ubiA prenyltransferas 79.1 15 0.00033 36.1 9.6 45 285-330 53-100 (299)
75 PRK12871 ubiA prenyltransferas 78.1 12 0.00025 36.9 8.6 36 151-186 182-218 (297)
76 TIGR00751 menA 1,4-dihydroxy-2 77.4 10 0.00022 37.0 7.9 39 154-195 174-213 (284)
77 PRK12886 ubiA prenyltransferas 76.9 9.4 0.0002 37.3 7.6 36 151-186 169-205 (291)
78 PRK12887 ubiA tocopherol phyty 75.2 14 0.00029 36.6 8.2 31 152-182 190-221 (308)
79 PRK12883 ubiA prenyltransferas 75.1 12 0.00027 36.0 7.8 30 156-185 166-196 (277)
80 PF01040 UbiA: UbiA prenyltran 74.7 22 0.00047 33.1 9.3 34 289-322 34-68 (257)
81 PRK12324 phosphoribose diphosp 74.7 11 0.00025 37.0 7.4 44 289-332 57-104 (295)
82 PRK04214 rbn ribonuclease BN/u 74.2 38 0.00082 34.8 11.5 20 152-171 113-132 (412)
83 PRK12848 ubiA 4-hydroxybenzoat 74.0 22 0.00047 34.5 9.2 37 150-186 168-205 (282)
84 PRK13106 ubiA prenyltransferas 73.2 14 0.00029 36.5 7.6 34 151-184 184-218 (300)
85 PRK13595 ubiA prenyltransferas 73.2 31 0.00067 33.9 10.0 38 290-328 59-99 (292)
86 PRK09573 (S)-2,3-di-O-geranylg 73.2 28 0.0006 33.6 9.7 46 287-333 46-94 (279)
87 PRK12888 ubiA prenyltransferas 72.2 24 0.00053 34.3 9.1 36 150-185 165-201 (284)
88 PRK12882 ubiA prenyltransferas 71.1 28 0.00061 33.5 9.3 42 288-330 48-92 (276)
89 PRK08238 hypothetical protein; 69.2 32 0.0007 36.2 9.8 46 288-333 236-285 (479)
90 PRK12874 ubiA prenyltransferas 68.6 51 0.0011 32.2 10.5 35 151-185 174-209 (291)
91 PRK12878 ubiA 4-hydroxybenzoat 66.9 55 0.0012 32.4 10.4 34 152-185 200-234 (314)
92 PLN02809 4-hydroxybenzoate non 65.5 26 0.00056 34.3 7.7 33 288-320 55-88 (289)
93 PRK12870 ubiA 4-hydroxybenzoat 64.5 37 0.0008 33.1 8.6 38 150-187 172-210 (290)
94 PRK05951 ubiA prenyltransferas 63.6 37 0.0008 33.2 8.5 34 155-191 182-216 (296)
95 PRK12873 ubiA prenyltransferas 62.4 43 0.00092 32.9 8.6 33 288-320 54-87 (294)
96 PRK12869 ubiA protoheme IX far 59.4 27 0.00059 33.8 6.6 41 287-327 45-89 (279)
97 PRK12895 ubiA prenyltransferas 53.5 1.6E+02 0.0034 28.8 10.9 35 150-184 165-200 (286)
98 PLN02878 homogentisate phytylt 50.3 55 0.0012 32.0 7.0 33 295-328 40-75 (280)
99 PRK04375 protoheme IX farnesyl 50.1 50 0.0011 32.2 6.8 40 289-328 55-98 (296)
100 PRK13362 protoheme IX farnesyl 49.5 78 0.0017 31.2 8.1 44 287-330 56-103 (306)
101 COG1295 Rbn Ribonuclease BN fa 48.3 2.5E+02 0.0054 27.5 11.5 31 221-252 201-233 (303)
102 TIGR01473 cyoE_ctaB protoheme 46.2 1.2E+02 0.0026 29.1 8.8 41 288-328 45-89 (280)
103 PLN02776 prenyltransferase 44.7 1.5E+02 0.0033 29.7 9.4 43 286-328 37-83 (341)
104 PRK01637 hypothetical protein; 44.5 3E+02 0.0065 26.6 12.0 23 151-173 104-126 (286)
105 PRK12876 ubiA prenyltransferas 41.3 3.6E+02 0.0078 26.6 11.3 25 162-186 190-215 (300)
106 cd00867 Trans_IPPS Trans-Isopr 34.7 36 0.00078 31.4 3.0 34 290-323 158-201 (236)
107 PF09928 DUF2160: Predicted sm 29.6 3E+02 0.0064 22.1 8.3 54 292-350 19-72 (88)
108 PF04284 DUF441: Protein of un 25.2 3.7E+02 0.008 23.5 7.3 15 179-193 59-73 (140)
109 PRK10581 geranyltranstransfera 25.1 81 0.0018 31.0 3.7 44 287-330 212-266 (299)
110 PRK11383 hypothetical protein; 24.6 4.8E+02 0.01 22.9 8.9 16 292-307 117-132 (145)
111 PF06645 SPC12: Microsomal sig 21.2 2.8E+02 0.006 21.5 5.3 28 319-346 5-32 (76)
112 COG0818 DgkA Diacylglycerol ki 20.6 5.4E+02 0.012 22.0 9.2 80 92-182 6-91 (123)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=3.4e-53 Score=402.63 Aligned_cols=265 Identities=56% Similarity=0.983 Sum_probs=243.1
Q ss_pred HHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHH
Q 016127 128 SLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAV 207 (394)
Q Consensus 128 ~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~ 207 (394)
+++|.+..+|.++..+.+++.+++++++++.+..++||++|+|+||+|||+||+|||++|+++++.+...+.++|+.+++
T Consensus 7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~ 86 (280)
T PLN02878 7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86 (280)
T ss_pred hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46676766677666778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHH
Q 016127 208 MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFI 287 (394)
Q Consensus 208 ~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~ 287 (394)
.+|++++.++++.+++++++||.++||+|+||+++++..+..+++++.+.+|+|.|++++++|++ ..++.+.++..+++
T Consensus 87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~-~~~~~~~~~~~~f~ 165 (280)
T PLN02878 87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRP-AVFTRPLIFATAFM 165 (280)
T ss_pred HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCc-cccchhHHHHHHHH
Confidence 99988888877778799999998789999999999999998888888889999999999998875 34556666666788
Q ss_pred HHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 016127 288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWL 367 (394)
Q Consensus 288 ~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~ 367 (394)
+++..+++++||++|+|||++.|++|+|+++|++++++++..++.++|+..++.|..++..+...++.+||++++..+++
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~ 245 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ 245 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999998888998888778899999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhc
Q 016127 368 RVRAVDLSDNASILSFYMFIWKASDS 393 (394)
Q Consensus 368 ~~~~vd~~~~~~~~~Fy~~i~~l~~~ 393 (394)
|.+++|++++++..+||||||||||+
T Consensus 246 rs~~vD~~sk~~i~~fY~fiwklfy~ 271 (280)
T PLN02878 246 RAQSVDLSSKAAITSFYMFIWKLFYA 271 (280)
T ss_pred HhHhcCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=6.5e-51 Score=398.43 Aligned_cols=295 Identities=31% Similarity=0.538 Sum_probs=245.8
Q ss_pred chhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 016127 94 SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172 (394)
Q Consensus 94 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~-~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~D 172 (394)
|++.+++..+.+++|+|++|||+++++.++++.+++++.....+. +...+...+.++++...++.+++.+||++|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456678888899999999999999999999988777664322221 1112334445555556666666669999999999
Q ss_pred ccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHH
Q 016127 173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (394)
Q Consensus 173 r~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~ 252 (394)
|+|||+||+++|++|+++++.+..++.++++.+++..|++.+ +..+++.+++++||. ||+|+||+++.++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~-~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLL-ITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999996544 444678899999995 99999999999999988888
Q ss_pred hHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (394)
Q Consensus 253 g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~ 332 (394)
|..+.+|.+.+..+...+. ..++...++..++.++|+.+++++||++|+|||++.|+||+|+++|++++.+++..++.
T Consensus 159 g~i~~~g~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~ 236 (308)
T PRK12887 159 GVIVNLGLFLHFQWLLGGS--VLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLT 236 (308)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHH
Confidence 8888788776543222222 23556666777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 016127 333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKASDS 393 (394)
Q Consensus 333 ~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~l~~~ 393 (394)
++|+..++.|......+...++.++|++.+..+++|.+++|++|+++.++||||||||||+
T Consensus 237 ~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ 297 (308)
T PRK12887 237 ACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFL 297 (308)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence 9999888777766666666777799999999999999999999999999999999999996
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2e-36 Score=292.69 Aligned_cols=258 Identities=17% Similarity=0.146 Sum_probs=205.5
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCCcc
Q 016127 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL 181 (394)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~RPl 181 (394)
++|+|.|++||+....+......|.++|.+..++ +. .+++.+++.+++++++|++||+.|+|+|++|+ |+||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~--~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIH--PI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 4789999999988787777777788887543222 21 24556778889999999999999999999995 59999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHH
Q 016127 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (394)
Q Consensus 182 asG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~ 261 (394)
|+|++|++||+.+..+++++++.+++.+|+.++..+ .....+...|+. +||++.++++.+++..|..+..|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999998776654 345556667774 8999999999888888866666654
Q ss_pred hhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV 341 (394)
Q Consensus 262 ~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~ 341 (394)
++.|+. .+....+++++...+|+.++|++|++||+|+|++.|+||+|+++|++++.++...+..++..++.+.
T Consensus 150 -----Av~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~ 222 (286)
T PRK12895 150 -----AVIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWIS 222 (286)
T ss_pred -----HHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHH
Confidence 344431 1222334567788999999999999999999999999999999999988877766777776666666
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHH
Q 016127 342 GASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFY 384 (394)
Q Consensus 342 g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~-~~Fy 384 (394)
|.... ...|.++.++.+..+.+|+..+|.+|+++| ..||
T Consensus 223 g~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F 262 (286)
T PRK12895 223 GIYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFF 262 (286)
T ss_pred HHHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 65543 234667888999999999999999999988 6655
No 4
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=1.7e-35 Score=287.11 Aligned_cols=259 Identities=19% Similarity=0.166 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHchhhhHHHH---HHHHHHHHhcc--ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC
Q 016127 102 LKKFHALYRFMRAYACAGVI---IATTSNSLLPV--QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~--~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk 176 (394)
++++++|+|++|.+++.+.. +|+..|..++. +..++ +. .+++.+++..++++++|++||+.|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~--~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~ 77 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD--LK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVE 77 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 46899999999999987774 45656666653 22222 22 24567889999999999999999999999876
Q ss_pred --CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhH
Q 016127 177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (394)
Q Consensus 177 --~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~ 254 (394)
|+||+|+|++|+++++.+..++.++++.+++.+|+..+..+ .++.++.+.||. +||++.++++..++..+.
T Consensus 78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~ 150 (289)
T PLN02809 78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW 150 (289)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence 49999999999999999999999999999998887666555 455667889995 899999999988887776
Q ss_pred HhhhhHHhhhhhHhhCCCCcCCCHHHH-HHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127 255 LTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (394)
Q Consensus 255 l~~lg~~~~~~t~v~g~~~~~~~~~~i-~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 333 (394)
.+..|+. ++.|+ .+...+ .++....+|+.+++++++++|+|||++.|+||+|+++|+++..++.. +..+
T Consensus 151 ~~l~g~~-----av~g~----~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~ 220 (289)
T PLN02809 151 GALLGWA-----AVKGS----LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAA 220 (289)
T ss_pred HHHHHHH-----HHhCC----CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHH
Confidence 6666653 34454 233333 36677788999999999999999999999999999999996666654 6666
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 016127 334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM 385 (394)
Q Consensus 334 a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~ 385 (394)
++..+...|+..+..+ . +.+++++.+..+.+|++.+|.+|+++|.++|.
T Consensus 221 ~~~~l~~~g~~~~~~~--~-~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~ 269 (289)
T PLN02809 221 SIGGLALSGYNAGLGW--P-YYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV 269 (289)
T ss_pred HHHHHHHHHHHhcCcH--H-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6776667777665432 2 44578888889999999999999998877653
No 5
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-35 Score=289.14 Aligned_cols=260 Identities=17% Similarity=0.200 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHchhhhHHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC
Q 016127 101 FLKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP 177 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~ 177 (394)
.++++++|+|++||+++.+.. +|++.|..+|.+..++ +. ..++.+++.+++++++|++||++|+|+|++|+|
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 446789999999999987775 5777888887654333 22 245677888999999999999999999987653
Q ss_pred --CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHH
Q 016127 178 --YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (394)
Q Consensus 178 --~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l 255 (394)
+||+|+|++|++|+..+..++.++++.+++.+|+.++..+ +.+.++.+.||. .||++.++++.+++.+|..
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 8999999999999999999999999999998997666555 345567889995 7999888888888877766
Q ss_pred hhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHH
Q 016127 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 335 (394)
Q Consensus 256 ~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~ 335 (394)
+..|+.. +.|+ ++...+++.+..++|+.+++++|++||+|+|++.|+||+|+++|++++.++.. +..++.
T Consensus 153 ~l~g~~a-----~~g~----~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~ 222 (290)
T PRK12870 153 VLISWSA-----VTGH----LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTV 222 (290)
T ss_pred HHHHHHH-----HcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHH
Confidence 5555542 3444 35555667778899999999999999999999999999999999998887666 445444
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHH
Q 016127 336 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASILSFYM 385 (394)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v--d~~~~~~~~~Fy~ 385 (394)
.++...|+..+..+ .|..+..+....+.+|+..+ |.+|++.|.+||.
T Consensus 223 ~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~ 271 (290)
T PRK12870 223 GFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFL 271 (290)
T ss_pred HHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 55566677665432 24457778888999999988 8778877766654
No 6
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=4.2e-35 Score=284.21 Aligned_cols=264 Identities=19% Similarity=0.206 Sum_probs=207.7
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC--CCCCccc
Q 016127 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLA 182 (394)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~n--k~~RPla 182 (394)
+|+|+|++||++...+......|.++|.++.++ +. ..++.+++.+++++++|++||+.|+|+|++| +|+||+|
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~ 76 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV 76 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence 689999999999988877777788887554333 22 2566788999999999999999999999998 5799999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHh
Q 016127 183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262 (394)
Q Consensus 183 sG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~ 262 (394)
+|++|++++..+..++.++++.++..+|+.+...+ ..+.++.+.|+. +||++.++++..++..+..+..|+.+
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a 149 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWVA 149 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888887665544 345566789985 89999999999988887766666543
Q ss_pred hhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 016127 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 342 (394)
Q Consensus 263 ~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g 342 (394)
+.|.. +.....+++.+..++|+.+++++||++|+|+|++.|+||+|+++|+|++++++..+..+++.+.++.+
T Consensus 150 -----~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (282)
T TIGR01475 150 -----VIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG 222 (282)
T ss_pred -----HhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33442 11144455667788999999999999999999999999999999999998888877777777666666
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHH
Q 016127 343 ASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS-FYMFIWKA 390 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~-Fy~~i~~l 390 (394)
...+..+ .|.++..+....+.++.+.+|.+|+++|++ |+.....+
T Consensus 223 ~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~~~~l 268 (282)
T TIGR01475 223 FYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYANGFL 268 (282)
T ss_pred HHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHH
Confidence 6555432 344556666678899999999999887775 66665443
No 7
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.2e-35 Score=282.91 Aligned_cols=269 Identities=19% Similarity=0.170 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHchhhhHHHHHHHHHHHHhcccc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC
Q 016127 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQT---LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (394)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~---~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk 176 (394)
+.++++|+|+|++||++.+.+....+.|.++|... ....++. ..++++++.+++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~ 79 (291)
T PRK12874 3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNP 79 (291)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence 34567999999999999998877777777776421 0122332 35677888899999999999999999999997
Q ss_pred --CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhH
Q 016127 177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (394)
Q Consensus 177 --~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~ 254 (394)
|+||+|+|++|+++++.++.++.++++.+++.+|+.+.... +..++....||. +||++.++++.+++..|.
T Consensus 80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~ 152 (291)
T PRK12874 80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGL 152 (291)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHH
Confidence 48999999999999999999998888888888887766555 455667889995 899999999999998887
Q ss_pred HhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (394)
Q Consensus 255 l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 334 (394)
++.+|+. ++.|+ ++...+++.+..++|+.+++++|+++|+|+|++.|+||+|+++|++++.++......+.
T Consensus 153 ~~l~G~~-----av~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~ 223 (291)
T PRK12874 153 APIAGVV-----AVLGE----IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA 223 (291)
T ss_pred HHHHHHH-----HHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence 7777764 34444 35555666777889999999999999999999999999999999999888766555554
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 016127 335 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKA 390 (394)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~l 390 (394)
..+....+..... ..++.++..+.+..+.++.+.++.++++.|+.|+..+-++
T Consensus 224 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn~~l 276 (291)
T PRK12874 224 VLFWLLFVWCAHL---GLFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTLNGYL 276 (291)
T ss_pred HHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 4444444443332 2234567778888899999998877788899988777664
No 8
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.9e-35 Score=285.80 Aligned_cols=268 Identities=16% Similarity=0.194 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--
Q 016127 99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (394)
Q Consensus 99 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk-- 176 (394)
...++++++|+|++||++.+....+...|+++|.+..++ +. .+++.+++.+++++++|++||++|+|+|++|+
T Consensus 9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT 83 (300)
T PRK13106 9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT 83 (300)
T ss_pred hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence 346678999999999999999988888898888654333 22 24567889999999999999999999999985
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (394)
Q Consensus 177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~ 256 (394)
|+||+|+|++|++|++.+..++.+.++.+++.+|+.+...+. +..++...||. +||++.++++.+++..|..+
T Consensus 84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 156 (300)
T PRK13106 84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAV 156 (300)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHH
Confidence 589999999999999999877777777778888876665553 44456778985 89999999999998887666
Q ss_pred hhhHHhhhhhHhhCCCCc----CCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127 257 QFPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (394)
Q Consensus 257 ~lg~~~~~~t~v~g~~~~----~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~ 332 (394)
..|+.. +.|.... ..+...+++.+..++|+.++|++|++||+|+|++.|+||+|+++| +++++++..+..
T Consensus 157 ~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~ 230 (300)
T PRK13106 157 FSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQL 230 (300)
T ss_pred HHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHH
Confidence 666543 3342100 012233445567789999999999999999999999999999999 778888887877
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016127 333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIW 388 (394)
Q Consensus 333 ~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~ 388 (394)
++..++.+.|+..+..+ .|..+..+....+.+|+..+|.+ +++.+.|.+..|
T Consensus 231 ~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~ 282 (300)
T PRK13106 231 FSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIY 282 (300)
T ss_pred HHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccH
Confidence 77777777777665433 35567778888999999999988 556666655444
No 9
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-34 Score=279.85 Aligned_cols=264 Identities=15% Similarity=0.058 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHchhhhHHHHH---HHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC-
Q 016127 102 LKKFHALYRFMRAYACAGVII---ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP- 177 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l---~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~- 177 (394)
++++++|+|++||+++.++.+ |.+.|.+++.+..++ + ...++++++++++++++|++||+.|+|+|++|+|
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~--~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT 78 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS--L---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT 78 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence 456889999999999998865 445566665433222 2 2256788999999999999999999999998765
Q ss_pred -CCcccccccCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHH
Q 016127 178 -YLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (394)
Q Consensus 178 -~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l----~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~ 252 (394)
+||+|+|++|+++|+.+..++.++++.+++.+ |+.++..+ ++.++....||. +||++...++++++..
T Consensus 79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~ 151 (294)
T PRK12873 79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCW 151 (294)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHH
Confidence 99999999999999999999999998888765 44455444 345556789995 8999999999999888
Q ss_pred hHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (394)
Q Consensus 253 g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~ 332 (394)
+..+.+||. ++.|+. +.....+++++..++|+.+++++|+++|+|||+++|+||+|+++|++ +......+..
T Consensus 152 a~~~l~gw~-----Av~g~~--~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~ 223 (294)
T PRK12873 152 GFAVLIPWA-----AAEGSL--NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYF 223 (294)
T ss_pred HhHHHHHHH-----HHhCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHH
Confidence 777777763 345542 22223345557889999999999999999999999999999999985 4455555777
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHH-HHHHHHHH
Q 016127 333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASI-LSFYMFIW 388 (394)
Q Consensus 333 ~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~--~~~~-~~Fy~~i~ 388 (394)
++..++...|...+..+ .|.++.++.+..+.+|+..+|.+| +++| ..|....|
T Consensus 224 ~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~ 279 (294)
T PRK12873 224 LTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVI 279 (294)
T ss_pred HHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccH
Confidence 77777778888776543 355677788889999999999987 4666 44544444
No 10
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.8e-34 Score=277.07 Aligned_cols=264 Identities=17% Similarity=0.162 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC--CC
Q 016127 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YL 179 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~--~R 179 (394)
.+++++|+|++||++......+...|.++|..+.++ + ...++.+++.+++++++|++||++|+|+|++|+| +|
T Consensus 5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~---~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 79 (291)
T PRK12886 5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--A---SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR 79 (291)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence 467899999999999998888888888888554333 2 1245677899999999999999999999999984 89
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhh
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg 259 (394)
|+++|++|++|+..+...+.++++.+++.+|++++..+. +..++...||. +||++.++++.+++..+..+..|
T Consensus 80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g 152 (291)
T PRK12886 80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLGA 152 (291)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHHH
Confidence 999999999999998776666666666778876665553 35566889995 79999999999988877666556
Q ss_pred HHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 016127 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (394)
Q Consensus 260 ~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~ 339 (394)
++. +.|+ ++...+++.+..++|+.+++++++++|+|||+++|+||+|+++|+++++++........+.+.+
T Consensus 153 ~~a-----~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 223 (291)
T PRK12886 153 WIA-----IRGT----IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF 223 (291)
T ss_pred HHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence 542 3444 3566666777789999999999999999999999999999999999998887666666666555
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHH-HHHHHHH
Q 016127 340 VVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD-NASILS-FYMFIWK 389 (394)
Q Consensus 340 ~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~-~~~~~~-Fy~~i~~ 389 (394)
+.+.....++ .|.++..+....+.++.+.++.+| ++.|++ |...+|.
T Consensus 224 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~ 272 (291)
T PRK12886 224 ALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYI 272 (291)
T ss_pred HHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHH
Confidence 5555544332 344555566667778888888887 356666 5555554
No 11
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=5.1e-34 Score=276.99 Aligned_cols=264 Identities=17% Similarity=0.211 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHchhhhHHH---HHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--
Q 016127 102 LKKFHALYRFMRAYACAGV---IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~---~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk-- 176 (394)
.+++++|++++||+++.+. .+|++.|.++|.... ..++ ...++++++.+++++++|++||++|+|.|++|+
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt 79 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART 79 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence 4578999999999988764 578888888875432 1222 225677888999999999999999999999866
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (394)
Q Consensus 177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~ 256 (394)
++||+++|++|++++..+..++.++++.+++.+|+..+..+ +++.++.+.||. .||.+.++++..++..+..+
T Consensus 80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~ 152 (285)
T PRK12847 80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMGI 152 (285)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHHH
Confidence 48999999999999999999999999999888887655544 456677899995 79998889888887777555
Q ss_pred hhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 016127 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (394)
Q Consensus 257 ~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (394)
..++.. +.|. ++...+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus 153 l~~~~a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 223 (285)
T PRK12847 153 LMAFAA-----VQNQ----LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL 223 (285)
T ss_pred HHHHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence 555432 3343 4566667778889999999999999999999999999999999999998888766555444
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHH
Q 016127 337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFYMFIWK 389 (394)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~-~Fy~~i~~ 389 (394)
..+.++..+.. ..+| ++.++....+.++...+|.+|+++|+ .|...++.
T Consensus 224 -~~~~~~~~~~~--~~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 273 (285)
T PRK12847 224 -WLILGIISSLH--NIFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYV 273 (285)
T ss_pred -HHHHHHHhcCc--HHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHH
Confidence 34445544432 2233 34555566888899999988876555 44444444
No 12
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-34 Score=277.85 Aligned_cols=267 Identities=22% Similarity=0.329 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHchhhhHHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC
Q 016127 100 VFLKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (394)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk 176 (394)
..+++++.+.+++|+++++++. +|...|..++....++ +...++++++++++++++|++||+.|+|+||+|+
T Consensus 5 ~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~ 79 (289)
T COG0382 5 SLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINP 79 (289)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCC
Confidence 3455666777777776666664 4555555555422221 3346788899999999999999999999999999
Q ss_pred C--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhH
Q 016127 177 P--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (394)
Q Consensus 177 ~--~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~ 254 (394)
| +||+|||++|+++++.+.++++++++.+++.+|++.+.+. +++.++.+.|+ ++||.+.+++++++..++.
T Consensus 80 rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~ 152 (289)
T COG0382 80 RTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYP------FLKRFTFLPQLVLGLAFGL 152 (289)
T ss_pred CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH------HhhcCCchHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999998665544 57888999995 5999999999999998887
Q ss_pred HhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (394)
Q Consensus 255 l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 334 (394)
.+..|+.. +.+. .+...+++.++..+|+++++++||++|+|+|++.|+||+|+.+|++++.+++.... ..
T Consensus 153 ~~~~g~~a-----~~~~----~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~ 222 (289)
T COG0382 153 GALAGAAA-----VGGS----LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LA 222 (289)
T ss_pred HHHHHHHH-----HhCc----cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HH
Confidence 76666543 2332 34556777888999999999999999999999999999999999999998888665 44
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 016127 335 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKA 390 (394)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~l 390 (394)
..++..+++...... ..+..+..+.+..+.+|...+|.++++.|+.++..-..+
T Consensus 223 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (289)
T COG0382 223 SALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLL 276 (289)
T ss_pred HHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHH
Confidence 444555555544321 346677888888999999999999999999988765543
No 13
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.8e-34 Score=276.62 Aligned_cols=256 Identities=17% Similarity=0.164 Sum_probs=199.6
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHhcc---ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCC
Q 016127 105 FHALYRFMRAYACAGVIIATTSNSLLPV---QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (394)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~---~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~R 179 (394)
+++|+|++||++-+........+.+.+. ++ ..++. ..++.+++.+++++++|++||++|+|+|++|+ |+|
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~R 76 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDG--SVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGR 76 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCC
Confidence 6799999999776654333333443432 22 12232 25667889999999999999999999999998 589
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhh
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg 259 (394)
|+|+|++|++|++.+...+.++++.++..+|+.++..+ .+.++....|+. .||++.++++.+++..+..+..|
T Consensus 77 PL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g 149 (284)
T PRK12888 77 ELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGA 149 (284)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888887666544 344556778985 79999999999888877666566
Q ss_pred HHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 016127 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (394)
Q Consensus 260 ~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~ 339 (394)
++. +.|+ +++..+++.+..++|+.+++++|++||+|+|++.|+||+|+++|+|++.++...+..+.+.++.
T Consensus 150 ~~a-----~~g~----~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~ 220 (284)
T PRK12888 150 WIA-----VTGT----WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFV 220 (284)
T ss_pred HHH-----HcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHH
Confidence 543 3444 4666677778889999999999999999999999999999999999998877767667776666
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHH
Q 016127 340 VVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFY 384 (394)
Q Consensus 340 ~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~-~Fy 384 (394)
+.|......+ .|.++.++.+..+.||++.+|.+|++.|. .|+
T Consensus 221 ~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 221 WFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 6776665443 34567778888999999999999988775 655
No 14
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.6e-34 Score=276.13 Aligned_cols=262 Identities=18% Similarity=0.202 Sum_probs=193.6
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcccc
Q 016127 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (394)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlas 183 (394)
++|+|+|++||++...+.++.+.|++++.+..++ .. ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 3789999999999999999999999888543221 11 145678889999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhh
Q 016127 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (394)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~ 263 (394)
|++|+++++.++.++.++++.+++.+|+..+... +.+.++.+.||. |+||.+.++++..+...|..+.+|+.
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~-- 149 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA-- 149 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999998986555444 455667889996 79999998988887776655444532
Q ss_pred hhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 016127 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA 343 (394)
Q Consensus 264 ~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g~ 343 (394)
..+.. .....+.+.+..++|+.+++++||++|+|||+++|+||+|+++|+|++.+++..+....... ...++
T Consensus 150 ----~~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~-~~~~~ 221 (276)
T PRK12882 150 ----AVGTE---GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAA-SPLPY 221 (276)
T ss_pred ----Hhccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 22321 12233445566677889999999999999999999999999999999998877555444332 22222
Q ss_pred -hcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHH
Q 016127 344 -SSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS-FYMFIW 388 (394)
Q Consensus 344 -~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~-Fy~~i~ 388 (394)
... .+..++..........+.++.+..|.+|++.|++ |...+|
T Consensus 222 ~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 266 (276)
T PRK12882 222 LLST--FGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMF 266 (276)
T ss_pred HHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 112 1222333333333445556777888888877755 444443
No 15
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=6.2e-34 Score=275.99 Aligned_cols=262 Identities=17% Similarity=0.170 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHchhhhHHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--
Q 016127 102 LKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk-- 176 (394)
++++++|+|++|++++.++. +|.+.|..+|.+..++ +. ..++.+++.+++++++|++||++|+|+|++++
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 35789999999988876664 4666777777544333 21 24556788889999999999999999999765
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (394)
Q Consensus 177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~ 256 (394)
|+||+|+|++|++++..++.++.++++.+++.+|+..+..+ +++.++.+.|+. .||++.++++.+++..|..+
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 48999999999999999999999999998888887665544 456667889984 78988889888888777655
Q ss_pred hhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 016127 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (394)
Q Consensus 257 ~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (394)
.+|+.. +.+. ++...+++.+...+|+...++.++++|+|||+++|+||+|+++|++++.+... ++.+...
T Consensus 150 ~~g~~a-----~~~~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~ 219 (282)
T PRK12848 150 PMAFAA-----VQGS----VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGL-LQLATLA 219 (282)
T ss_pred HHHHHH-----HhCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHH-HHHHHHH
Confidence 556542 3333 45666677778899999999999999999999999999999999998877764 4444444
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHH
Q 016127 337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSF-YMFIW 388 (394)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~F-y~~i~ 388 (394)
.+.+.++..+.. ..|.++..+....+.+++..+|.+|+++|.++ +...|
T Consensus 220 ~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~ 269 (282)
T PRK12848 220 LLAWAGWLLGLG---WAYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNW 269 (282)
T ss_pred HHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcH
Confidence 444555554432 23456777888889999999999888766544 44333
No 16
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-33 Score=273.87 Aligned_cols=256 Identities=20% Similarity=0.277 Sum_probs=197.9
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCccc
Q 016127 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA 182 (394)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPla 182 (394)
+++++|++++||+++..+.++.+.|.++|.+..+ + ...++.+++.+++++++|++||++|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---L---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---h---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 4789999999999999999999999888855322 1 124567788999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHh
Q 016127 183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262 (394)
Q Consensus 183 sG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~ 262 (394)
+|++|+++++.++.++.++++.++..+|+..+... +++.++++.||. ++||+++.++++.++.+|.+...|+..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887555444 456678899996 689999889998888888666555432
Q ss_pred hhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 016127 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 342 (394)
Q Consensus 263 ~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g 342 (394)
+ +.. +...+++....++|+.+.++++|++|+|||+++|+||+|+++|+|++.+++..+....+++..+.+
T Consensus 150 -----~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
T PRK12884 150 -----V-GEL----NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPY 219 (279)
T ss_pred -----h-CCC----chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 221 224455556778899999999999999999999999999999999999888766666665433333
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHH
Q 016127 343 ASSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSF 383 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~a~~l~~~~-~~vd~~~~~~~~~F 383 (394)
.....++ .|.+...+....+.++. +.++.+|++.++.+
T Consensus 220 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 220 LFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred HHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 2222222 34455556666666665 55666666666665
No 17
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=1.8e-33 Score=277.38 Aligned_cols=255 Identities=19% Similarity=0.281 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCc
Q 016127 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL-ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 180 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~-~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RP 180 (394)
.+++|+|++++||+++. ..+|++.|.++|.+.. +++... ...+...++...+..+++|++||++|+|+|++|||.||
T Consensus 9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRp 86 (331)
T PRK12392 9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRP 86 (331)
T ss_pred hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCC
Confidence 45689999999999888 7788888877876432 222111 11112223333455677899999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127 181 LASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (394)
Q Consensus 181 lasG~ls~~~a~~~~~~~~~l~l~l~~~l~~-------~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g 253 (394)
+++|++|+++++.+..++.++++.+++.++. +.++...+++++++++||. ||+++||+++.+...+++.++
T Consensus 87 l~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~ 164 (331)
T PRK12392 87 IPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYG 164 (331)
T ss_pred CCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHH
Confidence 9999999999999999999888887766542 2233333456788999995 899999999888877777776
Q ss_pred HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (394)
Q Consensus 254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 333 (394)
.....+++ ++.+. +++..+++.+..++|+.+++++||++|+|||++.|+||+|+++|++++.++......+
T Consensus 165 ~~~~~~~~-----a~~g~----~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~ 235 (331)
T PRK12392 165 FITFLSAN-----ALFSD----IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235 (331)
T ss_pred HHHHHHHH-----HHhcC----CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence 44433322 33443 3555566667788999999999999999999999999999999999999888765556
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016127 334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV 372 (394)
Q Consensus 334 a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v 372 (394)
.....+..++.....+. +....++.+..+.+|.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~l~ 271 (331)
T PRK12392 236 VFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQLY 271 (331)
T ss_pred HHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHHH
Confidence 66655666666554432 3345556666777777754
No 18
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=3e-33 Score=274.60 Aligned_cols=265 Identities=15% Similarity=0.108 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHH---chhhhHHHHHHHHHHHHhccccCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 016127 98 LNVFLKKFHALYRFM---RAYACAGVIIATTSNSLLPVQTLA---DLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV 171 (394)
Q Consensus 98 ~~~~~~~l~~~~~l~---Rp~~~~~~~l~~~~g~llA~~~~~---~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~ 171 (394)
.+..++++++|++++ ||+......+|++.|.++|..... ..++. ..++.+++.+++++++|++||++|+|+
T Consensus 23 ~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~i 99 (314)
T PRK12878 23 DRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDI 99 (314)
T ss_pred hhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344778999999999 777888888999999998865311 22221 256778899999999999999999999
Q ss_pred cccCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHH
Q 016127 172 DKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249 (394)
Q Consensus 172 Dr~nk--~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~ 249 (394)
|++++ ++||+++|++|++++..+..++.++++.+.+..|++.+..+ ++++++.+.|+. .||+..+++...+
T Consensus 100 D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~G 172 (314)
T PRK12878 100 DAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLG 172 (314)
T ss_pred ccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHH
Confidence 99876 48999999999999999999999999999888887665554 456677899985 8998888877777
Q ss_pred HHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHH
Q 016127 250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVS 329 (394)
Q Consensus 250 ~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~ 329 (394)
+..+..+..|++. +.|+ ++...+++++..++|+.+.+.+++++|+|+|+++|+||+|+++|+++++++..
T Consensus 173 l~~~~~~l~g~~a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~- 242 (314)
T PRK12878 173 LAFSWGALMGWAA-----HFGS----LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVL- 242 (314)
T ss_pred HHHHHHHHHHHHH-----HhCC----CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHH-
Confidence 7666555566543 3443 45555666777889999999999999999999999999999999999988875
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 016127 330 MLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM 385 (394)
Q Consensus 330 l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~ 385 (394)
+..+......+.+...+.++ .+.++.......+.+|..++|.+|++.|+++|.
T Consensus 243 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~ 295 (314)
T PRK12878 243 FYGLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFK 295 (314)
T ss_pred HHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH
Confidence 33443343444444444333 233455555667889999999888776665554
No 19
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.7e-33 Score=272.56 Aligned_cols=263 Identities=19% Similarity=0.228 Sum_probs=194.7
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcccc
Q 016127 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (394)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlas 183 (394)
++++|++++||+++..++++.+.|.+++.+..++ + ...++.+++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~--~---~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKID--L---KGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcc--h---HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 3688999999999999999999998888543222 2 1256678899999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhh
Q 016127 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (394)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~ 263 (394)
|++|+++++.++.++.++++.+++.+|++.+..+ +++.++.+.||. ++||++.++++.++...|..+..|+..
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~- 149 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA- 149 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999988887666554 456667889995 589999999999988888666666542
Q ss_pred hhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 016127 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA 343 (394)
Q Consensus 264 ~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g~ 343 (394)
+.+. ...+++....++|+.+++++||++|+|+|+++|+||+|+++|+|++.++......+...+.. .+.
T Consensus 150 ----~~~~------~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~-~~~ 218 (279)
T PRK09573 150 ----VFNV------LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP-LPY 218 (279)
T ss_pred ----Hccc------hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 2221 22334455667888999999999999999999999999999999999887755444443322 222
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHH-HHHHHHHHHHh
Q 016127 344 SSPFLANKLITIIGHGILASIFWLR-VRAVDLSDNASI-LSFYMFIWKAS 391 (394)
Q Consensus 344 ~~~~~~~~~~~~~~~~i~a~~l~~~-~~~vd~~~~~~~-~~Fy~~i~~l~ 391 (394)
..+ ..+..|.++..+....+.++ .+..+.+|++.| +.+..+.+.+|
T Consensus 219 ~~~--~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~ 266 (279)
T PRK09573 219 FLG--IFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMI 266 (279)
T ss_pred HHH--HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 211 11233444555555556666 344455555543 33344444443
No 20
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=9.7e-34 Score=274.78 Aligned_cols=222 Identities=20% Similarity=0.222 Sum_probs=175.8
Q ss_pred HHHHHHHchhhhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCccccc
Q 016127 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG 184 (394)
Q Consensus 106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG 184 (394)
|+|++++||+++..++++++.|.+++.....+ +++ ...++.++++..+.+.++|++||++|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46889999999999999999999887422122 222 112344677888999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhhh
Q 016127 185 EISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 264 (394)
Q Consensus 185 ~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~ 264 (394)
++|+++++.+..++..+++.+++.++.+......+++.+++++||. ||+++||+++++++..++.++.....+.+
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~--- 153 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH--- 153 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999999998888766533334567778999995 89999999988988887765533222221
Q ss_pred hhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHH
Q 016127 265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 340 (394)
Q Consensus 265 ~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~ 340 (394)
.+.+. +++..++..+..++|+.+++++||++|+|+|+++|+||+|+++|+|++++++..++.++|...+.
T Consensus 154 --~~~~~----~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 154 --AIFAP----LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred --HHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 12232 35555555667778899999999999999999999999999999999999998877777765443
No 21
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=3.1e-33 Score=274.88 Aligned_cols=225 Identities=21% Similarity=0.259 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHH-HHHHHHHHHHHHHHHHHHhhhhccccccccCCCCC
Q 016127 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFT-GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~-~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~R 179 (394)
.++++++|++++||+++.+++++++.|++.+. . .++...... .++.++++..++++++|++||++|+|+|++|||+|
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R 100 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR 100 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence 35678999999999999999999888876543 2 222221111 13445677788999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh-hh
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT-QF 258 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~-~l 258 (394)
|+++|++|+++++.+..++.++++.+++.+|++.+.+. +++++++++||. ||+++||+++++++.+++.+|..+ ..
T Consensus 101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988886555443 456777899995 888999999889888887765433 22
Q ss_pred hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (394)
Q Consensus 259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (394)
+++ ++.++. .++..++..+..++|+.+++++||++|+|+|+++|+||+|+++|++++++++..++.++|.+.
T Consensus 178 g~~-----~~~~~~---~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 178 GAA-----AFGAGL---PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred HHH-----HhccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 322 222222 455556666777788999999999999999999999999999999999999887777776654
No 22
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.2e-33 Score=268.74 Aligned_cols=260 Identities=13% Similarity=0.145 Sum_probs=195.1
Q ss_pred HHHHHHHHHHch-hhhHHHHHHHH-HHHHhcc------cc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 016127 103 KKFHALYRFMRA-YACAGVIIATT-SNSLLPV------QT---LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV 171 (394)
Q Consensus 103 ~~l~~~~~l~Rp-~~~~~~~l~~~-~g~llA~------~~---~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~ 171 (394)
+++|.|.++.|. |+.+. +|+. .|+++|. ++ .++ +..+++..++.+++++++|++||+.|+|+
T Consensus 2 ~~~~~~~~~i~~~ht~Fa--lpfa~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~Rsag~~~Nd~~Drdi 74 (300)
T PRK12876 2 MRIKYFQQLINCKYALFS--ALFLSASTVFALSLPEISFSLFSLGG-----IKTISLGGSAFFCARTVGIIVNQIIDCAI 74 (300)
T ss_pred chHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccCCCcCCCC-----HHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 358899999997 55554 4543 4666774 22 222 23366788999999999999999999999
Q ss_pred cccCCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHH
Q 016127 172 DKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249 (394)
Q Consensus 172 Dr~nk~--~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~ 249 (394)
|++|+| +||+|+|++|+++++.+...+.++++.++..+|+.++..+. +.+++...||. +||+++++++.++
T Consensus 75 D~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLG 147 (300)
T PRK12876 75 DKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILG 147 (300)
T ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHH
Confidence 999985 99999999999999999988888888888889987776653 45566689995 8999999999888
Q ss_pred HHHhHHhhhhHHhhhhhHhhCCCCcCCCH----HHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHH
Q 016127 250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325 (394)
Q Consensus 250 ~~~g~l~~lg~~~~~~t~v~g~~~~~~~~----~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~ 325 (394)
+..+..+..++. ++.+++ .++ ..+++.+..++|+.++|++|++||+|+|++.|+||+|+++|++++.+
T Consensus 148 l~~~~~~l~~~~-----Av~~~~---~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ 219 (300)
T PRK12876 148 LVYYLAILMNFF-----AIIETP---LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIR 219 (300)
T ss_pred HHHHHHHHHHHH-----HHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHH
Confidence 877765555554 334442 233 22344556677888999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHH
Q 016127 326 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILAS--IFWLRVRAVDLSDNASILSFYMF 386 (394)
Q Consensus 326 l~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~--~l~~~~~~vd~~~~~~~~~Fy~~ 386 (394)
+...+..++..++++.|...+..+ .+|..+.++.+. .+.+|.+.+|.|+++.|..||..
T Consensus 220 ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~ 280 (300)
T PRK12876 220 IASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLG 280 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Confidence 777677776666667777666543 234444443333 34566688888888999887764
No 23
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=5.3e-33 Score=269.29 Aligned_cols=261 Identities=18% Similarity=0.180 Sum_probs=195.6
Q ss_pred HHHHHHHHchhhhHHH---HHHHHHHHHhccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CC
Q 016127 105 FHALYRFMRAYACAGV---IIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY 178 (394)
Q Consensus 105 l~~~~~l~Rp~~~~~~---~l~~~~g~llA~~~~~~~-~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~ 178 (394)
+++|.|++|++++.++ .+|.+.|..+|... ... ++. ..++.+++..++++++|++||++|+|+|+.|+ |+
T Consensus 1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~ 76 (281)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKS 76 (281)
T ss_pred ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccC
Confidence 3578899998887666 45666777777541 111 121 24556778889999999999999999999765 48
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (394)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l 258 (394)
||+|+|++|++++..+..++.++++.+++.+|+..+..+ +++.++.+.||. .||++.++++..++..+..+..
T Consensus 77 RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~ 149 (281)
T TIGR01474 77 RPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALM 149 (281)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988897666554 456677999995 8999999998888877766666
Q ss_pred hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (394)
Q Consensus 259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (394)
|++. +.|. ++...+++.....+|+.+.+++|+++|+|+|++.|+||+|+++|++++++... +..++....
T Consensus 150 g~~a-----~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~ 219 (281)
T TIGR01474 150 GWAA-----VTGD----LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG-LYALMILLL 219 (281)
T ss_pred HHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHH-HHHHHHHHH
Confidence 7542 3443 35555556677889999999999999999999999999999999988755544 444433434
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHH
Q 016127 339 VVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSF-YMFIWK 389 (394)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~F-y~~i~~ 389 (394)
.+.+...+..+ .|.++..+.+..+.++...+|.+|+++|+++ ...++.
T Consensus 220 ~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 268 (281)
T TIGR01474 220 ALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKANNYV 268 (281)
T ss_pred HHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhHH
Confidence 44554444322 3446677778889999999988777655544 444444
No 24
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=8.1e-33 Score=276.38 Aligned_cols=273 Identities=19% Similarity=0.202 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCC
Q 016127 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~R 179 (394)
..+++|+|++++||++|..++++++.|+.. .+.+ ++.+. .....+.++++..++++++|++||++|+|+|++|+|+|
T Consensus 81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~-~g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R 158 (375)
T PLN00012 81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAA-SGNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR 158 (375)
T ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHH-cCCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence 457789999999999999999999998874 3322 22221 11223567778889999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHH
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l-------~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~ 252 (394)
|+++|++|+++++.+..++.++++.+++.+ +++.+.+ .+++++++++||. ||+++||++++|++.++..+
T Consensus 159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l-~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~ 235 (375)
T PLN00012 159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYL-ALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASY 235 (375)
T ss_pred CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHH
Confidence 999999999999997777766666666544 3322322 3456677999995 89999999999988776655
Q ss_pred hHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (394)
Q Consensus 253 g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~ 332 (394)
+.++..+.+ ++.|. +++..+++.++.++|+.++++.||++|+|+|++.|+||+|+++|++++++++..++.
T Consensus 236 ~~lp~~~g~-----a~~g~----~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~ 306 (375)
T PLN00012 236 ISLPWWAGQ-----ALFGT----LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID 306 (375)
T ss_pred HHHHHHHHH-----HHcCC----CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence 533221111 23444 456666666777889999999999999999999999999999999999998875444
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 016127 333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKAS 391 (394)
Q Consensus 333 ~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~l~ 391 (394)
+.... +.++.... ...++......+...++++..+...+|+.++...|.-.=+.|
T Consensus 307 l~~l~--~~~~l~~~--~~~~y~~~~~~l~l~~l~~~~~~~~~~p~~~~~~~~~~a~~~ 361 (375)
T PLN00012 307 ITQLS--VAGYLLAI--GKPYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQASAQPF 361 (375)
T ss_pred HHHHH--HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 44332 22222221 111222122222223333333344457777666665544433
No 25
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=3e-32 Score=263.76 Aligned_cols=265 Identities=14% Similarity=0.123 Sum_probs=194.7
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCCcc
Q 016127 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL 181 (394)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~RPl 181 (394)
++|+|+|++||++.....++.+.|.+++.+..+ ++. ..++.+++..++++++|++||++|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGV--SWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 368999999999989999999999888854322 222 24567888899999999999999999999987 69999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhH
Q 016127 182 ASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV 260 (394)
Q Consensus 182 asG~ls~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~ 260 (394)
|+|++|++++..++.++.++++.+++. +|+.+.....+...+..+.||. ++||+++...+..++..+.++..|+
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~ 150 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGGFAGNAAALAGY 150 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877 7765433333445567789996 5899998777666665555554454
Q ss_pred HhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHH
Q 016127 261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 340 (394)
Q Consensus 261 ~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~ 340 (394)
+. ..|. ++...+++.+..++|+.+.....+++|+|||+++|+||+|+++|++++.+....+..+...+...
T Consensus 151 ~a-----~~g~----~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~ 221 (279)
T PRK12869 151 AS-----GTGS----LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL 221 (279)
T ss_pred HH-----HhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence 32 3343 45666666777888988887778899999999999999999999999988776555444443333
Q ss_pred HHHhcCCchHHHHHHHHHH-HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHh
Q 016127 341 VGASSPFLANKLITIIGHG-ILASIFWLRVRAVDLSDNA-SILSFYMFIWKAS 391 (394)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~-i~a~~l~~~~~~vd~~~~~-~~~~Fy~~i~~l~ 391 (394)
.+. ... + ..|.++.. ..+..+.++.+.++.++++ +.+.|...+|++.
T Consensus 222 ~~~-~~~--g-~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~ 270 (279)
T PRK12869 222 LYL-YYI--G-LIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA 270 (279)
T ss_pred HHH-hhc--c-HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 333 222 2 23333333 3444566666667655554 5566888888864
No 26
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=4.1e-32 Score=264.98 Aligned_cols=267 Identities=13% Similarity=0.062 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCC
Q 016127 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~R 179 (394)
++++++|++++||+.+..+.++...|.++|.+.. .++. ..++++++..++++++|++||++|+|+|++|+ |+|
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~--~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPGV--PPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 3469999999999999999999999998886432 2232 24567889999999999999999999999987 699
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l 258 (394)
|+++|++|++|+..++.++.++++.+++. .|+.+.....+........||. ++||++.......++..+.++..
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~ 156 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTPQNIVIGGAAGAMPPLI 156 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCccchHHHHHHHHhHHHH
Confidence 99999999999999999999999988755 5654554443322335678996 69999965555555544455555
Q ss_pred hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (394)
Q Consensus 259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (394)
|++. +.|. ++...+++.+..++|+...+..++++|+|||+++|+||+|+++|++++++++.....+....
T Consensus 157 g~~a-----~~g~----~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~- 226 (296)
T PRK04375 157 GWAA-----VTGS----LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV- 226 (296)
T ss_pred HHHH-----hCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH-
Confidence 6542 3343 45656677788899999999999999999999999999999999999888766443333222
Q ss_pred HHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHH
Q 016127 339 VVVGASSP-FLANKLITIIGHGILASIFWLRVRAVDLSDNA-SILSFYMFIWKA 390 (394)
Q Consensus 339 ~~~g~~~~-~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~-~~~~Fy~~i~~l 390 (394)
.+++...+ .++ .++..+....+..+.++.+.++.+|++ +.+.|+...|.+
T Consensus 227 ~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~ 278 (296)
T PRK04375 227 SLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL 278 (296)
T ss_pred HHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 22222222 222 222224455566677788888777665 557788888775
No 27
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=8e-32 Score=263.97 Aligned_cols=226 Identities=21% Similarity=0.312 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCC
Q 016127 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~R 179 (394)
..+++|+|++++||+++..++++++.|...+ +.+ ++... .....+.++++..++++++|.+||++|+|.|+.|+|+|
T Consensus 12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~R 89 (306)
T TIGR02056 12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYR 89 (306)
T ss_pred chhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC
Confidence 4566889999999999999999999888753 322 22211 11123445577789999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~------~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g 253 (394)
|+++|++|+++++.++..+.++++.+++.+.. +..+...+++++++++||. ||+++||+++++++..+..++
T Consensus 90 pi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~ 167 (306)
T TIGR02056 90 PIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASYI 167 (306)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHH
Confidence 99999999999999998888888877765431 2223333566778999995 889999999888887766655
Q ss_pred HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (394)
Q Consensus 254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 333 (394)
..+..+.+ ++.|. +++..++..+..++|+.++++.||++|+|+|++.|+||+|+++|+|++++++..++..
T Consensus 168 ~~~~~~~~-----a~~g~----~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~ 238 (306)
T TIGR02056 168 ALPWWAGH-----ALFGE----LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDI 238 (306)
T ss_pred HHHHHHHH-----HHhCC----CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHH
Confidence 33322222 22343 4566666677778899999999999999999999999999999999999998877777
Q ss_pred HHHHHH
Q 016127 334 AYGAAV 339 (394)
Q Consensus 334 a~~~~~ 339 (394)
++.+.+
T Consensus 239 ~~~~~~ 244 (306)
T TIGR02056 239 FQGLIA 244 (306)
T ss_pred HHHHHH
Confidence 665433
No 28
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=4.1e-31 Score=256.02 Aligned_cols=265 Identities=16% Similarity=0.106 Sum_probs=195.7
Q ss_pred HHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCCcccc
Q 016127 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLAS 183 (394)
Q Consensus 106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~RPlas 183 (394)
|+|+|++||+++..+.++++.|.++|.+.. +.++. ..++.+++.+++++++|++||++|+|.|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 468999999999999999999998885432 12332 25667889999999999999999999999976 6999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHH-HHhhccCCccccccccccchhHHHHHHHHhHHhhhhHH
Q 016127 184 GEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIF-VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (394)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~l~~~~~-l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~ 261 (394)
|++|++++..++.++.++|+.+. ..+|+....... ++.+ ..+.||. .+||++..+.+..++..+..+..|++
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~ 150 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA 150 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988844 457765554443 3443 4789995 48999888777766554444444543
Q ss_pred hhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV 341 (394)
Q Consensus 262 ~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~ 341 (394)
. ..|. ++...+++.....+|+.......+++|+|||+++|+||+|+++|+|++.+..............+.
T Consensus 151 a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~ 221 (280)
T TIGR01473 151 A-----VTGS----ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLL 221 (280)
T ss_pred H-----hcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2343 456666667778899998888889999999999999999999999988877664443333333333
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHHHh
Q 016127 342 GASSPFLANKLITIIGHGILASIFWLRVRAVDLS-DN-ASILSFYMFIWKAS 391 (394)
Q Consensus 342 g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~-~~-~~~~~Fy~~i~~l~ 391 (394)
+.....++ .++.++..+.+..+.++.+..|.+ |+ ++.+.|+...+.+.
T Consensus 222 ~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~ 271 (280)
T TIGR01473 222 AFLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLA 271 (280)
T ss_pred HHHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 33333222 334356666777788888888766 54 46788888888764
No 29
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.8e-31 Score=258.14 Aligned_cols=268 Identities=14% Similarity=0.164 Sum_probs=197.4
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-----C
Q 016127 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----P 177 (394)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk-----~ 177 (394)
+++|.|++++||++......|++.|.++|.....++++. ..++++++..++++++|.+||++|.+.|+.|+ |
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 368899999999999999999999998886543456543 35678899999999999999999965554443 7
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127 178 YLPLASGEISMGTGIAITLASALMSLAYAV----MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (394)
Q Consensus 178 ~RPlasG~ls~~~a~~~~~~~~~l~l~l~~----~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g 253 (394)
+||+++|++|+++++.+..++..+++.++. ..+. ..+...+++.++++.||. ||+++|+++ +|++..++.+|
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~-~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g 154 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGI-GAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWS 154 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHH
Confidence 899999999999999988887666654432 2353 333334567889999995 888899876 57777788888
Q ss_pred HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (394)
Q Consensus 254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 333 (394)
..+.+|.+.. .++. +++..+...+...+++...+.+|++||+|+|++.|+||+|+++|+|++ +++..+...
T Consensus 155 ~~~vlg~~~~-----~~~~---~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~ 225 (296)
T PRK05951 155 HMLVMGLIYV-----WLGN---LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLS 225 (296)
T ss_pred HHHHHHHHHH-----HhCc---ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHH
Confidence 6666665532 2222 455556666777888888999999999999999999999999999999 666557777
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016127 334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 386 (394)
Q Consensus 334 a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~ 386 (394)
+|+..+......-.++....+.++.......+.++.++.|.++.+.|..+++.
T Consensus 226 ~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 226 PYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence 77755444333222333334445555555566677777777766666666654
No 30
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=4.3e-31 Score=255.48 Aligned_cols=205 Identities=24% Similarity=0.326 Sum_probs=163.4
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcccc
Q 016127 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (394)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlas 183 (394)
++|+|++++||+++..+.++.+.|++++.+..++ +. ..+..+++.++.++++|++||++|+|+|+.|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3689999999999999999988898887544322 21 134566788888999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhh
Q 016127 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (394)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~ 263 (394)
|++|++++..+..++.++|+.+++.+|++.+.+. +.+.++++.||. ++||.+.++++.++..+|..+..|+..
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a- 149 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA- 149 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999988887666554 456677999996 689988889988888777555455432
Q ss_pred hhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHH
Q 016127 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 330 (394)
Q Consensus 264 ~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l 330 (394)
+ +. ++...++ ....++++.+.++.||++|+|+|+++|+||+|+++|+++++++....
T Consensus 150 ----~-~~----~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 150 ----V-GR----IGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred ----h-cc----ccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 2 32 2333222 23356667788999999999999999999999999999998877644
No 31
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=3.7e-31 Score=254.76 Aligned_cols=259 Identities=18% Similarity=0.199 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCc
Q 016127 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 180 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RP 180 (394)
....++.+++++||..|+.++.++.+|...+.+. .|+.+.. +++.+......+.+.|.+||++|+|+|++|+|+||
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 3456788999999999999999999998776542 2322222 34455666778889999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127 181 LASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (394)
Q Consensus 181 lasG~ls~~~a~~~~~~~~~l----~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~ 256 (394)
+++|++|++++..+..++.+. ++.+++..|++.+.+. +++.++.++||. ||+|+|++|++++++. ..+|.+.
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~p~ 159 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYALPL 159 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHHHH
Confidence 999999999998865544433 5566777786555443 567789999995 9999999999998876 3345433
Q ss_pred hhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 016127 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (394)
Q Consensus 257 ~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (394)
..+ ..+.|.+ ..... .....+|++++++++|++|+||||+.|+||+|+++|+|++.+++..+..++..
T Consensus 160 ~~~------~~~~g~~----~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~ 227 (292)
T PRK13595 160 ALP------ALALGAP----VPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGA 227 (292)
T ss_pred HHH------HHHcCCc----chHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHH
Confidence 222 1234432 22211 24556888999999999999999999999999999999999999877666544
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016127 337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389 (394)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~~i~~ 389 (394)
++.... .+ ..+...+..++.+..++ .|.+.++.-..|-.|+|-
T Consensus 228 ~~~~~~--~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 270 (292)
T PRK13595 228 LLWPVS--RL---TALALWLICGGMALALW-----RRPTPETAHRLYPLSIVT 270 (292)
T ss_pred HHHHhc--ch---HHHHHHHHHHHHHHHHh-----cCCCHHHHhccchHHHHH
Confidence 333221 11 11112233333333322 677777777788888874
No 32
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.6e-30 Score=254.31 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCC
Q 016127 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk--~~R 179 (394)
+.++++|++++||+++..+.++++.|+.++... +.++. ..+.++++..++++++|++||++|+|+|+.++ ++|
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R 84 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR 84 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence 456889999999999999999999999888533 22332 24556788899999999999999999999764 489
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~-~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l 258 (394)
|+|+|++|+++++.++.++.++|+.++. ..|+.......+..+...+.||. ++||++..+++.+++..+.++..
T Consensus 85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~ 159 (306)
T PRK13362 85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV 159 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654 45754443433334445789995 59999999999988887777777
Q ss_pred hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (394)
Q Consensus 259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (394)
|+.+ +.|. ++...+++....++|+...+...+++|+|||+++|+||+|+++|++++.+..... .+.....
T Consensus 160 G~~a-----~~g~----~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~-~~~~~~~ 229 (306)
T PRK13362 160 GYCA-----VTGQ----FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLY-ILVFALV 229 (306)
T ss_pred HHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHH-HHHHHHH
Confidence 7653 3343 4566677788889999999999999999999999999999999999888755432 3322222
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh---cCCC-HHHHHHHHHHHHHHhh
Q 016127 339 VVVGASSPFLANKLITIIGHGILASIFWLRVRAV---DLSD-NASILSFYMFIWKASD 392 (394)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v---d~~~-~~~~~~Fy~~i~~l~~ 392 (394)
.......+. .+..|.+...+....+++...+. +.++ +.+.+-|..++|+|.-
T Consensus 230 s~l~~~~g~--~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~~ 285 (306)
T PRK13362 230 TALLPLAGY--TGIGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTITA 285 (306)
T ss_pred HHHHHHHcc--ccHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 222222221 11223333333333333333221 2233 3467889999999753
No 33
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=2.2e-29 Score=245.40 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=176.7
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccc--cccc--cCCCCC
Q 016127 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDK--VNKPYL 179 (394)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~--~~Dr--~nk~~R 179 (394)
.+|+|++++||+++..+++|++.|.+++... .++++. ..++.+++.+++++++|.+|||+|+ +.|+ .++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3688999999999999999999998888532 234432 3567788999999999999999998 5675 467899
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHH
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~----l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l 255 (394)
|+++|++|++++..++.++.++++.++.. .++ ...+..+.+++++++||. ||.++|+++ ++++..++.+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW-WLLLLGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence 99999999999998887777766555443 353 333334567778899995 888888887 5777777878865
Q ss_pred hhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHH
Q 016127 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 335 (394)
Q Consensus 256 ~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~ 335 (394)
+..+.+. +..+ .++...++..++.++|+...++.||++|+|+|++.|+||+|+++|++++++++..+..++|
T Consensus 154 ~~~~~~~-----~~~~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 154 IVLGTYY-----LQAG---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence 5554332 1222 2466667777888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhc
Q 016127 336 GAAVVVGASS 345 (394)
Q Consensus 336 ~~~~~~g~~~ 345 (394)
...+...+..
T Consensus 226 ~~~~~~~~~~ 235 (293)
T PRK06080 226 LCIVLLALLG 235 (293)
T ss_pred HHHHHHHHHh
Confidence 8666554443
No 34
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=248.97 Aligned_cols=267 Identities=18% Similarity=0.154 Sum_probs=206.9
Q ss_pred hhHHHHHHHHHHHHHHHHchhhhHHHHH---HHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 016127 95 NSFLNVFLKKFHALYRFMRAYACAGVII---ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV 171 (394)
Q Consensus 95 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~l---~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~ 171 (394)
.+..+..+++++.|.|++|.+.++++.+ |+....+++... ..+ +. +.-+.++-.+.++|++++|.+||+.|+|+
T Consensus 54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g~~-p~-~~mL~LFG~GAllMRgAGCtINDlwDkdl 130 (353)
T KOG1381|consen 54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-GLL-PS-IKMLALFGVGALLMRGAGCTINDLWDKDL 130 (353)
T ss_pred hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-Ccc-ch-hHHHHHhcccHHHhccCCceehhhhhhhh
Confidence 4445556667999999999999999965 565666666532 111 21 11133445778899999999999999999
Q ss_pred cccCCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHH
Q 016127 172 DKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249 (394)
Q Consensus 172 Dr~nk~--~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~ 249 (394)
|+..+| .||++||++|+++|+.+..+.+.+++.+..++|+....+. ..++.+.+.|+. +||+++..++.++
T Consensus 131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLg 203 (353)
T KOG1381|consen 131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLG 203 (353)
T ss_pred hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHh
Confidence 998665 8999999999999999999999999999999997666443 567778889996 8999998876665
Q ss_pred --HHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHH
Q 016127 250 --SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLS 327 (394)
Q Consensus 250 --~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~ 327 (394)
++||. .+||- ++.|.. .+...+.+++.-..|++.+|++|++||+++|.+.|+|+.+.++|+++..|++
T Consensus 204 ltfnwGA--llGw~-----A~~g~~---~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~ 273 (353)
T KOG1381|consen 204 LTFNWGA--LLGWC-----ALKGSL---SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLS 273 (353)
T ss_pred hhcchhh--hhcch-----hhcCcc---ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHh
Confidence 45553 34543 344442 2333455677778999999999999999999999999999999998766665
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 016127 328 VSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM 385 (394)
Q Consensus 328 ~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy~ 385 (394)
. +-......+..+|+.++..|. |..+.++.+..|.+|+.++|+||+++|..+|.
T Consensus 274 g-f~a~~ia~La~aG~~s~q~~p---yy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~ 327 (353)
T KOG1381|consen 274 G-FGAAQIASLAAAGIASDQTWP---YYAALGAVAARLGSQIYKVDIDNPSDCWKKFK 327 (353)
T ss_pred h-hhHHHHHHHHHhhhccCCCch---HHHHHHHHHHHHHhheeeeecCChHHHHHHHH
Confidence 5 555555667788888887663 34458888899999999999999999988774
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.3e-28 Score=239.93 Aligned_cols=258 Identities=13% Similarity=0.126 Sum_probs=174.3
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-------
Q 016127 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN------- 175 (394)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~n------- 175 (394)
+++++|++++||++......++..|.++|......+++.. .++.+++..++..++|++||+.|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4688999999999887777777778777731111233321 233344555555778999999999999864
Q ss_pred --C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhhccCCccccccccc---cchhH
Q 016127 176 --K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGN---SFLAA 245 (394)
Q Consensus 176 --k--~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~---~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~---~~~~~ 245 (394)
| ++||+++|++|++++..+.+++.++++.++..++.. ..+...+.+.++++.|+. .||. | .+.
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p-~~~ 152 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYP-VAQ 152 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccccccc-HHH
Confidence 3 489999999999999999999999888887665431 121222345567788884 2342 3 122
Q ss_pred HHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHH
Q 016127 246 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325 (394)
Q Consensus 246 ~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~ 325 (394)
+.+++..+.++..| +. ..|. ++...++..++.++|+.+++++||++|+|||++.|+||+|+++|++++++
T Consensus 153 l~G~~~~~~~~~~g-~~-----~~g~----~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~ 222 (297)
T PRK12871 153 LLGRTDFTLFPAAG-YL-----CYGQ----PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY 222 (297)
T ss_pred HHHHHHHHHHHHHH-HH-----HhCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence 22222223333333 21 2343 35555666678899999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 016127 326 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFY 384 (394)
Q Consensus 326 l~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~Fy 384 (394)
+...+..+.... ..+...+. +...+....++.+..+.+|.+..+.+|++.|-+-|
T Consensus 223 ~i~~~~~l~~l~--~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 277 (297)
T PRK12871 223 WVTGFTALHFLA--AIFFLREL--GPIALYGFLAGFVLLAGANLYLWKEKSQDAGMKIL 277 (297)
T ss_pred HHHHHHHHHHHH--HHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 666454444332 22333332 22333444466777889999999999888885443
No 36
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=3.4e-28 Score=239.11 Aligned_cols=222 Identities=13% Similarity=0.064 Sum_probs=173.3
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC----CCCc
Q 016127 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYLP 180 (394)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk----~~RP 180 (394)
+|.|++++||++...++.|++.|.++|.....++++. ..+++++++++++.++|.+|||+|.+.|..++ +.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 6789999999999999999999998886443445543 25677888899999999999999987655544 6899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHh
Q 016127 181 LASGEISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (394)
Q Consensus 181 lasG~ls~~~a~~~~~~~~~l~l~----l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~ 256 (394)
+++|.+|+++++..+..+.++++. +.+..|+ ..+...+++++.++.||. ||+++||++ +|++..++.+|..+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~-~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSW-LLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999988777776666 5555674 444445678889999995 899999999 68888788888666
Q ss_pred hhhHHhhhhhHhhCCCCcCCCHHHH--------------------HHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchh
Q 016127 257 QFPVYVHIQKYVLGRPLEIFTRPLM--------------------FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSV 316 (394)
Q Consensus 257 ~lg~~~~~~t~v~g~~~~~~~~~~i--------------------~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv 316 (394)
..|.+.. ..+. +++..+ +..+...+.+...++.||+||+|+|+++|+||+|+
T Consensus 156 v~g~~yv-----~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v 227 (317)
T PRK13387 156 FLLAVYI-----NTNT---ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY 227 (317)
T ss_pred HHHHHHH-----hcCC---CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee
Confidence 5554432 1111 122111 24555667778889999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127 317 MLGKERVFRLSVSMLSIAYGAAVVV 341 (394)
Q Consensus 317 ~lG~k~a~~l~~~l~~~a~~~~~~~ 341 (394)
++|+|++++++..+..++|+..+..
T Consensus 228 ~lG~~~a~~l~~~l~~~a~l~~~~~ 252 (317)
T PRK13387 228 YIGREKGVVLFAILFYASYLAIAVI 252 (317)
T ss_pred eEcHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988865443
No 37
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=8.6e-27 Score=225.01 Aligned_cols=218 Identities=20% Similarity=0.188 Sum_probs=156.3
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHH-HHHHHHHHHHhhhhccccccccCCCCCcccc
Q 016127 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVP-AVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (394)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la-~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlas 183 (394)
+|.+++++||.+|+.+.+|+..|+++| ++.++ +. .++..++ ....+.+.|.+|||+|.|.|+.|+|++.. .
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~--~~----~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~ 72 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEID--WL----FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E 72 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCCCC--hH----HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence 367899999999999999999999888 33332 21 2222232 33344445677999999999999875443 4
Q ss_pred cccCHHHHHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127 184 GEISMGTGIAITLASAL-----MSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (394)
Q Consensus 184 G~ls~~~a~~~~~~~~~-----l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l 258 (394)
|.+++++.......... .++.+....+ +.++....++++.++.||. ||.|+|++++.++++.++.......+
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~ 149 (282)
T PRK13105 73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGS-WASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALY 149 (282)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHH
Confidence 88999988543333332 2323333335 4444444678889999995 89999999999986554443322334
Q ss_pred hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHH
Q 016127 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (394)
Q Consensus 259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (394)
|.+. + ++. ++...++....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.
T Consensus 150 G~~~-----~-~~~---~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 150 GLVL-----A-GAP---FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred HHHH-----h-hcc---ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence 4332 2 332 455556667778889999999999999999999999999999999999999999999988866
Q ss_pred HHHH
Q 016127 339 VVVG 342 (394)
Q Consensus 339 ~~~g 342 (394)
+..+
T Consensus 221 ~~~~ 224 (282)
T PRK13105 221 LALP 224 (282)
T ss_pred HHHH
Confidence 6444
No 38
>PLN02922 prenyltransferase
Probab=99.96 E-value=1.8e-26 Score=226.44 Aligned_cols=234 Identities=19% Similarity=0.209 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccCCCCC
Q 016127 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYL 179 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~nk~~R 179 (394)
.++++.|++++||++....+.|++.|.++|.....++++.. .++++++.++++.++|.+|||+|.+ .|+.++..+
T Consensus 12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 88 (315)
T PLN02922 12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV 88 (315)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence 35688899999999999999999999999865434566532 5678899999999999999999975 676432221
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHH
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~l----~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l 255 (394)
.-..| |+++....+.+++++++...+.+ +.|.+++..+++++.+++||. ||+++|++++ |++..++.+|.+
T Consensus 89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l 163 (315)
T PLN02922 89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPL 163 (315)
T ss_pred CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHH
Confidence 12234 89999887777766655322221 224555555678899999995 9999999985 666667888876
Q ss_pred hhhhHHhhhhhHhhCC-CCc--CCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHH
Q 016127 256 TQFPVYVHIQKYVLGR-PLE--IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (394)
Q Consensus 256 ~~lg~~~~~~t~v~g~-~~~--~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~ 332 (394)
+..|.|.. ++...+. ... .+++..++..+...+++.+++++||+||+|+|++.|+||+|+++|+++++++...+..
T Consensus 164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~ 242 (315)
T PLN02922 164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence 66665542 1110101 000 1344556677888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 016127 333 IAYGAAVVVGAS 344 (394)
Q Consensus 333 ~a~~~~~~~g~~ 344 (394)
.+|...+.....
T Consensus 243 ~~y~~~i~~v~~ 254 (315)
T PLN02922 243 LLYSLLAALGLL 254 (315)
T ss_pred HHHHHHHHHHHH
Confidence 998865554433
No 39
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.95 E-value=1.9e-26 Score=223.47 Aligned_cols=216 Identities=18% Similarity=0.125 Sum_probs=169.1
Q ss_pred chhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cccc--CCCCCcccccccCH
Q 016127 113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV--NKPYLPLASGEISM 188 (394)
Q Consensus 113 Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~--nk~~RPlasG~ls~ 188 (394)
||+++..++.|++.|.++|.... .+++. ..+++++++++++.++|.+|||+|.+ .|+. .+|.|++++|.+|+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999986542 56543 35678889999999999999999984 3543 35789999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhch-----HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhh
Q 016127 189 GTGIAITLASALMSLAYA----VMIRS-----PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (394)
Q Consensus 189 ~~a~~~~~~~~~l~l~l~----~~l~~-----~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg 259 (394)
+++...+.+++++++.++ +..++ ++++...+++++.+++||. ||+++|+++ +|++.+++.+|.++..|
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence 999988877776555443 33443 1444444667788999995 899999998 57777888888776666
Q ss_pred HHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 016127 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (394)
Q Consensus 260 ~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~ 339 (394)
.+. ++.+ .+++..++..+...+.+.+++..||+||+|+|+++|+||+|+++|+|+++++...+...+|.+.+
T Consensus 154 ~~y-----vq~~---~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~ 225 (284)
T TIGR00751 154 TQY-----LQAH---RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF 225 (284)
T ss_pred HHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence 543 2222 25666666666677888999999999999999999999999999999999999999888887655
Q ss_pred HHHH
Q 016127 340 VVGA 343 (394)
Q Consensus 340 ~~g~ 343 (394)
+...
T Consensus 226 ~~~~ 229 (284)
T TIGR00751 226 VFML 229 (284)
T ss_pred HHHH
Confidence 5433
No 40
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.95 E-value=4.9e-26 Score=222.18 Aligned_cols=226 Identities=15% Similarity=0.107 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccCCCC
Q 016127 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPY 178 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~nk~~ 178 (394)
.+++++.|++.+||+++..++.|++.|.++|.....++++. ..++.+++..+++.++|.+|||+|.+ .|+. ++.
T Consensus 8 ~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~ 83 (304)
T PRK07419 8 SPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH 83 (304)
T ss_pred CccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc
Confidence 34678899999999999999999999999986543456653 35678899999999999999999987 6773 222
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhH
Q 016127 179 LPLASGEISMGTGIAITLASALMSLAY----AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (394)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~l----~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~ 254 (394)
...++..++++....+.+++++++.+ .+..| |+++...+++++.+++||. ||+++|++++ |++.+++.+|.
T Consensus 84 -~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~ 158 (304)
T PRK07419 84 -SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGP 158 (304)
T ss_pred -CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhheccC--CCcccCCCCc-hHHHHHHHHHH
Confidence 23345557888888777666655544 44456 4555555678889999995 9999999995 88888888887
Q ss_pred HhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (394)
Q Consensus 255 l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 334 (394)
++..|.+. +..+ .+++..+...+...+.+.+++.+||+||+|+|++.|+||+|+++|+|++++++..+...+
T Consensus 159 l~v~g~~y-----v~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~a 230 (304)
T PRK07419 159 LAVAAALY-----SQTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLI 230 (304)
T ss_pred HHHHHHHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHH
Confidence 77666553 2222 256666777777888889999999999999999999999999999999999999998889
Q ss_pred HHHHHHHHH
Q 016127 335 YGAAVVVGA 343 (394)
Q Consensus 335 ~~~~~~~g~ 343 (394)
|...+....
T Consensus 231 y~~~i~~v~ 239 (304)
T PRK07419 231 YALELLPVL 239 (304)
T ss_pred HHHHHHHHH
Confidence 886554433
No 41
>PLN02776 prenyltransferase
Probab=99.95 E-value=1.5e-25 Score=220.41 Aligned_cols=257 Identities=14% Similarity=0.034 Sum_probs=185.4
Q ss_pred HHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC--CCcccccccCH
Q 016127 111 FMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISM 188 (394)
Q Consensus 111 l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~--~RPlasG~ls~ 188 (394)
++||.....+++....|+++|.+..++ + ..+++.+++..++++++|++||++|+|+|++|+| +||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~---~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAID--L---PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 367888888888988999998654333 2 2256678899999999999999999999999764 99999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh-HHhhhhHHhhhhh
Q 016127 189 GTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG-LLTQFPVYVHIQK 266 (394)
Q Consensus 189 ~~a~~~~~~~~~l~l~l-~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g-~l~~lg~~~~~~t 266 (394)
++++.+++++.++|+.+ ++.+|+.+..++.+..++....||. +||++.+.. .++...| +++.+||.
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~~~-~lG~~~Ga~ppL~Gw~----- 143 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPANT-WVGAVVGAIPPLMGWA----- 143 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCchhH-HHHHHHHHHHHHHHHH-----
Confidence 99999999999988855 5667876665543333334678995 899998764 5555556 56666764
Q ss_pred HhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhh--cHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016127 267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML--GKERVFRLSVSMLSIAYGAAVVVGAS 344 (394)
Q Consensus 267 ~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~l--G~k~a~~l~~~l~~~a~~~~~~~g~~ 344 (394)
++.|+ ++...++++..+++|+........+.|+|||+++|++++|+.- |+++++.+......+....++..+..
T Consensus 144 Avtg~----~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g 219 (341)
T PLN02776 144 AASGQ----LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWG 219 (341)
T ss_pred HHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554 4666677888899999988888889999999999999999976 45555555443322222222222211
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHh
Q 016127 345 SPFLANKLITIIGHGILASIFWLRVRAVDLS-DNASILSFYMFIWKAS 391 (394)
Q Consensus 345 ~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~-~~~~~~~Fy~~i~~l~ 391 (394)
. .+..++.++.++.+..+.+.++..+.+ ++.+.+.|+.++++|.
T Consensus 220 ~---~~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~ 264 (341)
T PLN02776 220 V---TSSPFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLP 264 (341)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1 122345566666677777777777544 4567788999999975
No 42
>PRK08238 hypothetical protein; Validated
Probab=99.95 E-value=3.2e-26 Score=236.05 Aligned_cols=224 Identities=18% Similarity=0.240 Sum_probs=174.0
Q ss_pred eeeecc-CCcceEecCCccccccccCCCCCCCccchhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCC
Q 016127 61 KIASSR-NCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLT 139 (394)
Q Consensus 61 ~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~ 139 (394)
.+..|+ ++++++||++++.++.+++. +.+...+++.+..+++|++++|||+|.++.+.++ +.+++ +.+.+
T Consensus 151 Dlp~~~~A~~av~Vn~~~~l~~~a~~~-----~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~-- 221 (479)
T PRK08238 151 DLPVWAAARRAIVVGASPGVARAARAL-----GPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGD-- 221 (479)
T ss_pred HHHHHHhCCCeEEECCCHHHHHHHHHc-----CCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCC--
Confidence 348899 99999999998876644333 6677778888889999999999999999998876 44444 44323
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 016127 140 PAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWA 217 (394)
Q Consensus 140 ~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~n--k~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~ 217 (394)
+..+...++++++++++++++|++||++|+|+||+| ||+||+|||++|+++|+.++.+++++|+.+++.+|+ .+...
T Consensus 222 ~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~-~~~~~ 300 (479)
T PRK08238 222 LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP-AFLLV 300 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence 333345677888999999999999999999999997 789999999999999999999999999999999886 44445
Q ss_pred HHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Q 016127 218 VIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFI 297 (394)
Q Consensus 218 l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i 297 (394)
+++++++.++||. ++||.++++++++++.++..+..|+.. .+. +.+.+++. +..+......+.
T Consensus 301 ~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~~-----~~s~wll~-~~~~~~l~la~~ 363 (479)
T PRK08238 301 LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IGV-----ALSFWLLA-FSMFFFLSLALV 363 (479)
T ss_pred HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hcc-----CHHHHHHH-HHHHHHHHHHHH
Confidence 5678888999997 699999999999988777655555432 222 33333322 222334555778
Q ss_pred HhcCChhhhHHcCC
Q 016127 298 KDLHDVDGDKKFGI 311 (394)
Q Consensus 298 ~d~~D~egD~~~Gi 311 (394)
+...|.++++..|.
T Consensus 364 KR~~El~~~~~~~~ 377 (479)
T PRK08238 364 KRYTELRRALQRGK 377 (479)
T ss_pred HhHHHHHHHHhcCC
Confidence 88888888887775
No 43
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=6.4e-26 Score=215.26 Aligned_cols=188 Identities=26% Similarity=0.401 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc--CCCCCcccccccCHHHHHHHHHH
Q 016127 120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLA 197 (394)
Q Consensus 120 ~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~--nk~~RPlasG~ls~~~a~~~~~~ 197 (394)
...+++.|..++.+.. .++. ..+..+++.++++.++|.+||+.|+|+|+. |||+||+++|+++++++..++.+
T Consensus 4 ~~~~~l~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASGGP--FNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHcCC--CCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 3455666644443332 2232 244556666799999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCC
Q 016127 198 SALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFT 277 (394)
Q Consensus 198 ~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~ 277 (394)
+.++++.+++..+++.+... +++.+.+++|| ||+|+||++++++++.++.++.....+++. .++. .+
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~ 145 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD---PP 145 (257)
T ss_pred HHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc---cc
Confidence 99999999988887555544 55667779999 678899999999999999888666666543 2322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHH
Q 016127 278 RPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325 (394)
Q Consensus 278 ~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~ 325 (394)
...++...+..++.......+|++|+|+|++.|+||+|+++|+++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 444445555567777788888999999999999999999999999887
No 44
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.2e-25 Score=218.16 Aligned_cols=220 Identities=21% Similarity=0.239 Sum_probs=154.5
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCccc
Q 016127 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA 182 (394)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPla 182 (394)
+.+++++++.|+.+..........+.. . ....+..+ ....+++.++.+.++|++||+.|+|+|+.|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~-~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYM-A-SLLLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH-H-HHHHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 357899999999876665544433211 1 00011111 3345677888999999999999999999999999988
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCcccc-ccccccchhHHHHHHHHhHHhhh-h
Q 016127 183 SGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLL-RWKGNSFLAAFCMVSLNGLLTQF-P 259 (394)
Q Consensus 183 sG~ls~~~a~~~~~~~~~l~l~l~~-~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~-rlKr~~~~~~~~~~~~~g~l~~l-g 259 (394)
+++.....+..+..+...+++.+.. ..|++.+.. .+++.++++.||. ||. ++||.|.+++++.++.||..+.. |
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 6554444444444444444444432 346544433 3556778999996 554 58999999999999999855444 3
Q ss_pred HHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 016127 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (394)
Q Consensus 260 ~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~ 339 (394)
++. .+. .++...++..++.+++..+.+.++|++|+|+|+++|+||+|+++|+|++++++..+..+++..++
T Consensus 152 ~~~------~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~ 222 (285)
T PRK12872 152 VYY------YQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLI 222 (285)
T ss_pred HHh------ccc---ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHH
Confidence 332 122 13444455556667778889999999999999999999999999999999999988888877655
Q ss_pred HH
Q 016127 340 VV 341 (394)
Q Consensus 340 ~~ 341 (394)
..
T Consensus 223 ~~ 224 (285)
T PRK12872 223 LG 224 (285)
T ss_pred HH
Confidence 43
No 45
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.9e-25 Score=216.10 Aligned_cols=219 Identities=19% Similarity=0.263 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHH--HHHHHHHHHhhhhccccccccCCC
Q 016127 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPA--VLMHIYVVAINQLSDVEVDKVNKP 177 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~ll~~la~--~l~~~a~~~~Nd~~D~~~Dr~nk~ 177 (394)
.+..+|.++++.||++|..+..|++.|.++|....++ +++.. +++++. +..+.+.|++||++|+|+||.|+|
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~pr 78 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPK 78 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCC
Confidence 3467888999999999999999999999998764332 33321 111111 335566788999999999999877
Q ss_pred CCc---cc-ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127 178 YLP---LA-SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (394)
Q Consensus 178 ~RP---la-sG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g 253 (394)
++. ++ +|+.+.. ........+++.+.+..++.... .+++++++.+.||. ||+|+|++++.+..+.++..
T Consensus 79 k~~~r~~~~s~~~~~~---~~~~l~~~l~l~l~~~~~~~~~~-~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~~- 151 (282)
T PRK12875 79 KDREREVRYRGDRRVL---VAVALSGALALAFLLVLPPAAWP-ALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYI- 151 (282)
T ss_pred ccCCCCccHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHcC--CCccchhccHHHHHHHHHHH-
Confidence 543 33 2211111 11222333444444444432222 33567788999995 89999999998765543321
Q ss_pred HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (394)
Q Consensus 254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 333 (394)
+++..+++. ..|. ++... +.+...+|+.+++++||+||+|+|++.|+||+|+++|++++++++..+..+
T Consensus 152 ~~~~~~y~~-----~tg~----~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~ 220 (282)
T PRK12875 152 LPGVAAYAL-----VSGS----LPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLL 220 (282)
T ss_pred HHHHHHHHH-----HcCC----CcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHH
Confidence 222223322 2232 34433 233346899999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHH
Q 016127 334 AYGAAVVVG 342 (394)
Q Consensus 334 a~~~~~~~g 342 (394)
+..+.+..+
T Consensus 221 a~~~~~~~~ 229 (282)
T PRK12875 221 AAAAFAAVD 229 (282)
T ss_pred HHHHHHHHH
Confidence 766555544
No 46
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.94 E-value=7.3e-25 Score=212.46 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=166.1
Q ss_pred HHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccCCCCCcccccc
Q 016127 108 LYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLPLASGE 185 (394)
Q Consensus 108 ~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~nk~~RPlasG~ 185 (394)
|++.+||+++..++.|++.|.++|.....++++.. .++++++..+.+.++|.+|||+|.+ .|+.+. .+ ..++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~-~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HS-IVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CC-ccccc
Confidence 78999999999999999999999865434566533 5677889999999999999999976 477422 11 22223
Q ss_pred cCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhhhHH
Q 016127 186 ISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (394)
Q Consensus 186 ls~~~a~~~~~~~~~l~l~----l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~lg~~ 261 (394)
.++++....+.++.++++. +.+..+ |+++...+++++.++.||. ||+++|++++ |++..++.+|.++..+.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence 3567777666665555444 344445 4555555678889999995 9999999985 888888888876666654
Q ss_pred hhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV 341 (394)
Q Consensus 262 ~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~ 341 (394)
. ++.+ .+++..++..+...+.+.+++..||+||+|+|++.|+||+|+++|+|++.++...+...+|++.+..
T Consensus 153 y-----vqt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~ 224 (285)
T TIGR02235 153 Y-----AQSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIA 224 (285)
T ss_pred H-----HhCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHH
Confidence 3 2222 2567667777778888999999999999999999999999999999999999999999999865544
No 47
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.94 E-value=1.5e-24 Score=208.09 Aligned_cols=223 Identities=17% Similarity=0.165 Sum_probs=171.0
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cccc----CCC
Q 016127 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NKP 177 (394)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~--~Dr~----nk~ 177 (394)
+.+.|++++|||++...+.|++.|.++|......+++ +..+++++++.+++..+|..|||.|.+ .|.. .+.
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~ 83 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ 83 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence 4588999999999999999999999998765434443 347788999999999999999999974 5542 233
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHh
Q 016127 178 YLPLASGEISMGTGIAITLASALMSLAY----AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (394)
Q Consensus 178 ~RPlasG~ls~~~a~~~~~~~~~l~l~l----~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g 253 (394)
++-+...+++++..+.+.+.++..+..+ ....++ .+++..+++++.++.|+. +|+++.+.|+ |++..++.+|
T Consensus 84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG 159 (303)
T COG1575 84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFG 159 (303)
T ss_pred cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHH
Confidence 4555566677777776666555444433 344454 455556788899999996 8889999984 7777778888
Q ss_pred HHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (394)
Q Consensus 254 ~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 333 (394)
.+...+.+. ++.+ .+++..++..+...+.+..++..|++||+|+|+++|++|+|+++|++.++.+...++..
T Consensus 160 ~l~v~g~~y-----iqt~---~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 160 PLIVLGAYY-----IQTG---RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHH-----Hhcc---cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence 665555443 2222 25666666777778888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 016127 334 AYGAAVVV 341 (394)
Q Consensus 334 a~~~~~~~ 341 (394)
+|.+.++.
T Consensus 232 a~l~~~~~ 239 (303)
T COG1575 232 AYLAIVIF 239 (303)
T ss_pred HHHHHHHH
Confidence 98865543
No 48
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5e-25 Score=210.85 Aligned_cols=269 Identities=14% Similarity=0.102 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC--C
Q 016127 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y 178 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~--~ 178 (394)
...++|+|+++++|..+..+++....|+.+|... ..++.. ++++.++..++..+++++|++.|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 5678999999999999999999999999999752 233332 56788999999999999999999999999765 9
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhh
Q 016127 179 LPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (394)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~ 257 (394)
||+++|++++++++.++.++.++|+.+. +..|+.+..+.++..++-.+.||. .+||+.....+++++..++++.
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~NiviGg~aGa~Ppl 163 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQNIVIGGFAGAMPPL 163 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcccceeeeecccccccc
Confidence 9999999999999999999999999887 667865555555556667789997 5899998777777776667888
Q ss_pred hhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 016127 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA 337 (394)
Q Consensus 258 lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~ 337 (394)
+||. ++.|. ++...+++.+.+++|+...--.=++.-+||.+++|++.+|++-|++.+++.......+...+
T Consensus 164 iGwa-----Avtg~----~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~ 234 (304)
T COG0109 164 IGWA-----AVTGS----ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPV 234 (304)
T ss_pred ceee-----eeeCC----CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 8875 45665 35555556666666654333333455667779999999999999999887665332222222
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHh
Q 016127 338 AVVVGASSPFLANKLITIIGHGILASIFWLRVRAV-D-LSDNASILSFYMFIWKAS 391 (394)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v-d-~~~~~~~~~Fy~~i~~l~ 391 (394)
.++... .+ ..+..|.+...+....+++...+. . .|.+++.+-|.+++-+|.
T Consensus 235 sl~~~~-~g--~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~ 287 (304)
T COG0109 235 SLLLAL-LG--YVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLA 287 (304)
T ss_pred HHHHHH-hc--cchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 222222 11 122223333333333344433333 2 345678999999988865
No 49
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=5.8e-23 Score=198.93 Aligned_cols=174 Identities=21% Similarity=0.205 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhhhhccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccC
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSV 230 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~ 230 (394)
+.+.+...++|++||++|+|+|++|+|+||.+ +.+.+..+..+..++|+.+++..|+ .+ ++ +++.+.++.||.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~-~l-l~-ll~~l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGM-LL-LA-FLPFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhH-HH-HH-HHHHHHHHHhcC
Confidence 44556788899999999999999999999987 7888999999999999999998885 33 23 467778999996
Q ss_pred C--ccc--cccccccchhHHHHHHHHhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 016127 231 Q--LPL--LRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGD 306 (394)
Q Consensus 231 ~--~Pp--~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD 306 (394)
+ .+| +|+|+.+.+|++.+++.||.....+. + . ..+. + .+.....++...-.++++.+||++|+|||
T Consensus 138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~---g-~-~~~~----~-~~~~~i~l~~~~~l~~~~iindirDiEGD 207 (307)
T PRK13591 138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA---G-S-YCGS----L-IPVGLIFLFFGVKLFINSCVYDFKDVKGD 207 (307)
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHHHHHHHH---H-h-hhhh----H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence 3 224 47899999999999999986432110 0 0 0111 0 11111111112223566789999999999
Q ss_pred HHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 016127 307 KKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV 341 (394)
Q Consensus 307 ~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~ 341 (394)
++.|+||+|+++|+++++++...+..++++++++.
T Consensus 208 r~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~ 242 (307)
T PRK13591 208 TLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIA 242 (307)
T ss_pred HHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888754443
No 50
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.91 E-value=1.8e-22 Score=194.03 Aligned_cols=216 Identities=11% Similarity=0.117 Sum_probs=141.1
Q ss_pred HHHHHHHHHHchhhh---HHHHHHHHHHHHhc--cccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC
Q 016127 103 KKFHALYRFMRAYAC---AGVIIATTSNSLLP--VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP 177 (394)
Q Consensus 103 ~~l~~~~~l~Rp~~~---~~~~l~~~~g~llA--~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~ 177 (394)
++++-|.+-+-|-.. ....+.+ ..+.+. .++.+++.+ ..+.+++++..++..+++|++||++|+|+||+|+|
T Consensus 3 k~~~iy~~e~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P 79 (299)
T PRK13592 3 KRLNVYLKEMYPLLPRLILSLTLFF-EIYMITLLSNHISSFRI--GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP 79 (299)
T ss_pred hhHHHHHHHhccchhhhHHHHHHHH-HHHHHhhhccCCCCCCC--chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC
Confidence 356667777666332 2222222 112221 122233433 23456667777888999999999999999999999
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhc-----cCCccccccccccchhHHHHHHHH
Q 016127 178 YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAY-----SVQLPLLRWKGNSFLAAFCMVSLN 252 (394)
Q Consensus 178 ~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Y-----s~~~Pp~rlKr~~~~~~~~~~~~~ 252 (394)
+||+|||++|+++++.++..+.++++.+..... .. +...+..+.| +. ++||.++.+++.++...
T Consensus 80 ~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~-----i~-i~~~~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~lt 148 (299)
T PRK13592 80 HRALPSGRVKKKDLAIALSFIVAVSVLLNVLFM-----NN-VGWFLFLYIYGTLMSFW-----FFKRDKIQNSLPLALVT 148 (299)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHH-----HHcccCCCcchhhhhhc
Confidence 999999999999999999888777776664441 11 1122333444 64 68999999999999888
Q ss_pred hHHhhhh--HHhh-hhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHH
Q 016127 253 GLLTQFP--VYVH-IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVS 329 (394)
Q Consensus 253 g~l~~lg--~~~~-~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~ 329 (394)
|..+..| ++.. ......|.+ ......+++.+..++.++++|+.+|++| |||++ |.+|+|+++|.|++.++..+
T Consensus 149 g~~f~~g~~~~~~~fg~~~~g~~--~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~ 224 (299)
T PRK13592 149 HNPVMMILNLYTISFVCYKYNLP--LLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEV 224 (299)
T ss_pred cchhhhchhhhhhhhhhhhcccc--hhhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHH
Confidence 7554333 2211 001112321 1111112333445566899999999999 89986 59999999999999988887
Q ss_pred HHHHHHH
Q 016127 330 MLSIAYG 336 (394)
Q Consensus 330 l~~~a~~ 336 (394)
+..++..
T Consensus 225 l~ii~v~ 231 (299)
T PRK13592 225 VTLLDIL 231 (299)
T ss_pred HHHHHHH
Confidence 7655544
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.90 E-value=1.1e-21 Score=190.58 Aligned_cols=150 Identities=21% Similarity=0.290 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC--CCC
Q 016127 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPY 178 (394)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~n--k~~ 178 (394)
..+++++|++++|||+|.++.+.+.++ +++.. ..+ +..+...++++++++++++++|++||+.|+|+||+| ||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~-~~~--~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGN-LLN--PGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHh-hcc--cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 345789999999999999999877754 34422 212 112234567788888899999999999999999995 789
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (394)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l 258 (394)
||+|||++|++++..++.++.++|+.+++.+|+..+.. .++++++.++||. ++||.+++++++.++.++..+..
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~ 156 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA 156 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888654443 4667788899997 79999999999998877655544
Q ss_pred hH
Q 016127 259 PV 260 (394)
Q Consensus 259 g~ 260 (394)
|.
T Consensus 157 G~ 158 (295)
T PRK12324 157 GG 158 (295)
T ss_pred HH
Confidence 43
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.52 E-value=1.7e-14 Score=137.99 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC--CC
Q 016127 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YL 179 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~--~R 179 (394)
.+.++.|+|+.+|.--+.+++....|+++|...+ +++ .++...++..++.++.|.+||+++.+.|++++| .|
T Consensus 91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~R 164 (409)
T KOG1380|consen 91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNR 164 (409)
T ss_pred cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccc
Confidence 4568899999999876777777777888886653 332 256778999999999999999999999999776 99
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHHHhHHhhh
Q 016127 180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (394)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~~g~l~~l 258 (394)
|+++|++|+.+|+.++.+....|+.+.++ +|+....++..-.++.+.+|+ .+||.-....=.++.+.+++..+
T Consensus 165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihiinTWvGavVGAIPPLM 238 (409)
T KOG1380|consen 165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHIINTWVGAVVGAIPPLM 238 (409)
T ss_pred ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhhhhhHHHHHhccCCccc
Confidence 99999999999999999888888776554 776443333222334567788 38987643322222222356666
Q ss_pred hHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHH--HHHHHhcCChhhhHHcCCccchhh---hcHHHHHHHHHHHHHH
Q 016127 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV--IAFIKDLHDVDGDKKFGIKTLSVM---LGKERVFRLSVSMLSI 333 (394)
Q Consensus 259 g~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~--~~~i~d~~D~egD~~~Gi~Tlpv~---lG~k~a~~l~~~l~~~ 333 (394)
||.. ..|. .+...+++...+..|.+- ..+..++ ++|..+.|.+.+++. +-++.+.+....++.+
T Consensus 239 GwAA-----asg~----l~~ga~iLa~~LyaWQfPHFnaLS~~l--R~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L 307 (409)
T KOG1380|consen 239 GWAA-----ASGL----LDPGAMILAGILYAWQFPHFNALSWNL--RNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPL 307 (409)
T ss_pred hhhh-----hccC----CCccHHHHHHHHHHhcccchhhhhhhh--chhhhhccEEEEEeeccchhhHHHHHHHHHHhhh
Confidence 7643 2333 344455566666666422 1222233 345689999999885 3344566666656555
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHH
Q 016127 334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASILSFYMFIWKA 390 (394)
Q Consensus 334 a~~~~~~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v--d~~~~~~~~~Fy~~i~~l 390 (394)
+|.. ..+++... . +.+--...-.++.+...+. |.|..++.+-|+.++|.|
T Consensus 308 ~~~~-~~~~lT~~---w---f~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhL 359 (409)
T KOG1380|consen 308 SYAA-PSTDLTTW---W---FAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHL 359 (409)
T ss_pred hccc-cccCcccc---e---eeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 5442 22332222 1 1111111222223333222 456678999999999885
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.33 E-value=9.9e-13 Score=120.62 Aligned_cols=230 Identities=13% Similarity=0.134 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhcccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccc--cccccCCC
Q 016127 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQT--LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKVNKP 177 (394)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~--~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd~~D~--~~Dr~nk~ 177 (394)
..+.+.|+...||.....++.|...|+++|... ..|+.. ....+..++....+.++|.+|.|+|. .+|++...
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l---~~~fl~a~avlavh~agnlvntyfdf~kgid~kkad 134 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRL---ATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKAD 134 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhH---HHHHHHHhhheeeecccchhhhhhhhhhcccccccc
Confidence 467889999999999999999999999998643 233332 12334445566688999999999996 58887667
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHH---HHhchHHH---HHHHHHHHHHHhhccCCccccccccccchhHHHHHHH
Q 016127 178 YLPLASGEISMGTGIAITLASALMSLAYA---VMIRSPPF---IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251 (394)
Q Consensus 178 ~RPlasG~ls~~~a~~~~~~~~~l~l~l~---~~l~~~~~---~~~l~~~~~l~~~Ys~~~Pp~rlKr~~~~~~~~~~~~ 251 (394)
+|.+...-+.+.+...+++.+..+|...+ ..++|..+ .+..+.++--.+.|+.+ +.+|...+.+.+ +.+.
T Consensus 135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyialgdli-ili~ 210 (359)
T KOG4581|consen 135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIALGDLI-ILIL 210 (359)
T ss_pred chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEeccCEE-EEEe
Confidence 89999988999999888888877655433 33444211 11223343445788864 347776654432 2233
Q ss_pred HhHHhhhhHHhhhhhHhhCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHH
Q 016127 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSML 331 (394)
Q Consensus 252 ~g~l~~lg~~~~~~t~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~ 331 (394)
+|.+.++-.|. .+ .|. +.+..+-..+.+.+-+-++...|+.+|.|.||++|+-|+++.+|+..+-.++..++
T Consensus 211 fgpiavlfaf~-~q---~g~----l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~ll 282 (359)
T KOG4581|consen 211 FGPIAVLFAFA-IQ---TGH----LAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLL 282 (359)
T ss_pred echHHHHHHHH-Hh---cCc----eeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHH
Confidence 44322221121 11 122 11111111122333456677899999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHhcC
Q 016127 332 SIAYGAAVVVGASSP 346 (394)
Q Consensus 332 ~~a~~~~~~~g~~~~ 346 (394)
...|.+..+.+.-+.
T Consensus 283 f~py~lf~i~~~~~s 297 (359)
T KOG4581|consen 283 FAPYLLFFIFALHCS 297 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888987777766554
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=89.52 E-value=1.2 Score=43.85 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhccccccccCCCCCcccccccCHHHHHHH
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI 194 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG~ls~~~a~~~ 194 (394)
+...+..+.++..|++.|.|+|+.|+|+.+.. ++..+.++.+
T Consensus 183 lp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l 224 (303)
T COG1575 183 LPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL 224 (303)
T ss_pred HHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence 44455666778889999999999998754432 3444444443
No 55
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=88.85 E-value=1.9 Score=42.83 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHHHHHHH
Q 016127 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA 199 (394)
Q Consensus 149 ~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~~~~~~ 199 (394)
..+...+..+.....||+.|+|+||.+.+ .-|. ++..+.+..+...+.
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~ 242 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF 242 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence 34555566777789999999999998654 4444 344555554443333
No 56
>PRK13591 ubiA prenyltransferase; Provisional
Probab=88.44 E-value=2 Score=42.37 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=35.0
Q ss_pred HhhhhccccccccCC-CCCcccccccCHHHHHHHHHHHHH---HHHHHHHHhc-----hHHHHHHHHHHHHHHhhccC
Q 016127 162 AINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASAL---MSLAYAVMIR-----SPPFIWAVIAWIFVGTAYSV 230 (394)
Q Consensus 162 ~~Nd~~D~~~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~---l~l~l~~~l~-----~~~~~~~l~~~~~l~~~Ys~ 230 (394)
.+||+.|.|.||.+. +.-|..=|+ +.+..+...+.+ +..+++...+ |...+.....+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 689999999999864 456665453 333332222221 1222222222 21223344556667788886
No 57
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=87.43 E-value=3.1 Score=40.21 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127 153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (394)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ 185 (394)
.++......++||+-|+|.||.+ .+.-|..-|+
T Consensus 170 ~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 170 IFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 33445555688999999999985 4566665554
No 58
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=87.31 E-value=2.8 Score=41.32 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHH
Q 016127 154 VLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAI 194 (394)
Q Consensus 154 ~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~ 194 (394)
.+........||+-|+|+||.+.+ .-|. ++.++.+..+
T Consensus 184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l 222 (304)
T PRK07419 184 GLATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQL 222 (304)
T ss_pred HHHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHH
Confidence 345667778999999999999654 4444 3444444443
No 59
>PLN02922 prenyltransferase
Probab=86.85 E-value=3.1 Score=41.27 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHHH
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT 195 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~~ 195 (394)
+...+..+.....||+.|+|+||.++| .-|. ++..+.+..+.
T Consensus 195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~ 237 (315)
T PLN02922 195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVV 237 (315)
T ss_pred HHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHH
Confidence 334456667788999999999999765 4444 34445554433
No 60
>PLN00012 chlorophyll synthetase; Provisional
Probab=86.30 E-value=3.9 Score=41.55 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhcccccccc-CCCCCcccccc
Q 016127 153 AVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (394)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~~~Dr~-nk~~RPlasG~ 185 (394)
.++...+....||+-|+|.|+. +++.-|..-|+
T Consensus 261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 3456666778999999999997 46777776664
No 61
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=85.58 E-value=8 Score=37.53 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhhhcccccccc-CCCCCccccccc
Q 016127 150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGEI 186 (394)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~~~Dr~-nk~~RPlasG~l 186 (394)
+++.++....-..+|++.|+|.|+. +.|.-|..-|+-
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~ 203 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDN 203 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhh
Confidence 3444555556678899999999997 456777766643
No 62
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=84.86 E-value=8.4 Score=37.10 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCChhhhHHcCCccchhhhcH---HHHHHHHH
Q 016127 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK---ERVFRLSV 328 (394)
Q Consensus 287 ~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~---k~a~~l~~ 328 (394)
..+...+-..+||+-|.|.|++. ++.=|+.-|+ +.++....
T Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~ 89 (279)
T PRK12884 46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAI 89 (279)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHH
Confidence 34445666889999999999988 6777877774 34444443
No 63
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=84.22 E-value=4.7 Score=39.82 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127 155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (394)
Q Consensus 155 l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ 185 (394)
+...+....||+.|.|.||.. +|.-|..-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 345556789999999999985 5666765554
No 64
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=83.99 E-value=4.5 Score=40.43 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (394)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ 185 (394)
..++...+...+||+-|+|.|+.. ++.-|+.=|+
T Consensus 188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 344555666688999999999985 4566665453
No 65
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=83.62 E-value=11 Score=36.79 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhhccccccccC-CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~ 210 (394)
++..+...+...+|++-|+|.|+.. ++.-|. ++..+.+..+..++.+++..+-+..+
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666789999999999974 455554 34455565555555555444433333
No 66
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=83.07 E-value=6.8 Score=38.23 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhhccccccccC-CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 016127 153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210 (394)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ls~~~a~~~~~~~~~l~l~l~~~l~ 210 (394)
+.+...+..++||+-|.|.||.+ ++.-|. ++..+.+..+..++.+++.++...++
T Consensus 169 ~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 169 FFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667799999999999985 334443 45667777766666666555444443
No 67
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=82.99 E-value=6.3 Score=38.81 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127 154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (394)
Q Consensus 154 ~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ 185 (394)
.+...+....||+.|+|.|+.+ +|.-|..-|+
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~ 225 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI 225 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence 3456667789999999999985 4556654443
No 68
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=82.50 E-value=9.5 Score=36.93 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhhccccccccC-CCCCccccc
Q 016127 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASG 184 (394)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG 184 (394)
.+..++....-..+||..|+|.|+.. .|.-|..-|
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 33445555566789999999999874 456676666
No 69
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=82.28 E-value=6.5 Score=38.40 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHHHHH
Q 016127 152 PAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLA 197 (394)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~~~~ 197 (394)
...+........||+-|+|+||.+.+ .-|. ++..+.+..+...
T Consensus 169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~ 212 (285)
T TIGR02235 169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPW 212 (285)
T ss_pred HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHH
Confidence 33456667788999999999998643 4444 3445555544333
No 70
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=81.85 E-value=7.3 Score=37.84 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhhccccccccCC-CCCcccccccCHHHHHHHHHHHH
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASA 199 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~ 199 (394)
+...+........||+-|+|.||.+. +.-|. ++..+.+..+...+.
T Consensus 175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~ 221 (293)
T PRK06080 175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALL 221 (293)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHH
Confidence 33445566677889999999999864 34444 334444444443333
No 71
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=81.15 E-value=7.9 Score=37.49 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127 155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (394)
Q Consensus 155 l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ 185 (394)
+...+....||+-|.|.||.+ ++.-|..=|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 345556789999999999985 4566665444
No 72
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=81.11 E-value=8.3 Score=37.43 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (394)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ 185 (394)
++..++....-...|++.|+|.|+.+ .|.-|..-|.
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 33444555555688999999999975 4566665554
No 73
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=79.20 E-value=12 Score=36.42 Aligned_cols=36 Identities=19% Similarity=0.016 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHcCC-ccchhhhcH
Q 016127 285 AFISCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (394)
Q Consensus 285 ~~~~~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv~lG~ 320 (394)
+..++...+...+||+-|+|-|+++-+ |.=|.--|+
T Consensus 54 l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 54 LAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 333444566789999999999998876 344555553
No 74
>PRK13592 ubiA prenyltransferase; Provisional
Probab=79.11 E-value=15 Score=36.08 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHcCCccchhhhc---HHHHHHHHHHH
Q 016127 285 AFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSM 330 (394)
Q Consensus 285 ~~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG---~k~a~~l~~~l 330 (394)
+..++.+.+-.++||+.|+|-|+. +++.=|+-=| .+.++.....+
T Consensus 53 ~~vf~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 53 FTVFGFWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHH
Confidence 334445666789999999999965 4666666444 45555555433
No 75
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=78.14 E-value=12 Score=36.87 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhccccccccC-CCCCccccccc
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEI 186 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~l 186 (394)
+..++....-...||+.|+|.|+.+ .|.-|+.-|+-
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 4445556666789999999999984 56777766654
No 76
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=77.40 E-value=10 Score=37.03 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhccccccccCCC-CCcccccccCHHHHHHHH
Q 016127 154 VLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT 195 (394)
Q Consensus 154 ~l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a~~~~ 195 (394)
.+........|++-|.|.|+.+.+ .-|. ++..+.+..+.
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~ 213 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYH 213 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHH
Confidence 345566778999999999998644 4443 34455554433
No 77
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=76.91 E-value=9.4 Score=37.33 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhhcccccccc-CCCCCccccccc
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGEI 186 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~-nk~~RPlasG~l 186 (394)
+..++-...-..+|++.|+|.|+. ..|.-|..-|+-
T Consensus 169 ~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 205 (291)
T PRK12886 169 LAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVN 205 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence 333444444457888999999986 456777766653
No 78
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=75.24 E-value=14 Score=36.58 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhhccccccccCC-CCCccc
Q 016127 152 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLA 182 (394)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~~~Dr~nk-~~RPla 182 (394)
..++...+...+||+-|+|.||.+. +.-|..
T Consensus 190 ~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~ 221 (308)
T PRK12887 190 FVLVFTFAIAIFKDIPDMEGDRQYQITTFTLR 221 (308)
T ss_pred HHHHHHHHHHHHHhccchhhHHHcCCcchhHH
Confidence 3445555667899999999999854 444543
No 79
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=75.08 E-value=12 Score=36.01 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127 156 MHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (394)
Q Consensus 156 ~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ 185 (394)
...+....||+-|+|.|++. .|.-|..-|+
T Consensus 166 ~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 166 VNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 33455577999999999984 5667765554
No 80
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=74.67 E-value=22 Score=33.13 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChhhhHHc-CCccchhhhcHHH
Q 016127 289 CFCVVIAFIKDLHDVDGDKKF-GIKTLSVMLGKER 322 (394)
Q Consensus 289 ~~~~~~~~i~d~~D~egD~~~-Gi~Tlpv~lG~k~ 322 (394)
+.......+||+.|.|.|+.. +.+.-|+.-|+-+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 445667889999999999996 3455566555443
No 81
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=74.67 E-value=11 Score=36.96 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCChhhhHHcCC-ccchh---hhcHHHHHHHHHHHHH
Q 016127 289 CFCVVIAFIKDLHDVDGDKKFGI-KTLSV---MLGKERVFRLSVSMLS 332 (394)
Q Consensus 289 ~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv---~lG~k~a~~l~~~l~~ 332 (394)
+...+...+||+-|+|-|++.-+ +.=|+ ++..+.+......+..
T Consensus 57 l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~ 104 (295)
T PRK12324 57 LASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLV 104 (295)
T ss_pred HHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 33455679999999999998522 22233 3444545444443333
No 82
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=74.20 E-value=38 Score=34.79 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhhccccc
Q 016127 152 PAVLMHIYVVAINQLSDVEV 171 (394)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~~~ 171 (394)
+..++..--..+|++++.++
T Consensus 113 a~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 113 LLILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 33456666778999988654
No 83
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=73.95 E-value=22 Score=34.49 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhhccccccccC-CCCCccccccc
Q 016127 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEI 186 (394)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~l 186 (394)
++..++-...-...|.+.|+|.|+.. .|.-|..-|.-
T Consensus 168 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~ 205 (282)
T PRK12848 168 FLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRY 205 (282)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccc
Confidence 44445555555678999999999984 46677766653
No 84
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=73.24 E-value=14 Score=36.45 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhhccccccccC-CCCCccccc
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASG 184 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG 184 (394)
++.++...+-.++|+.-|+|.|+.. -+.-|+-=|
T Consensus 184 ~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 184 IGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 3445555555689999999999864 456666555
No 85
>PRK13595 ubiA prenyltransferase; Provisional
Probab=73.17 E-value=31 Score=33.89 Aligned_cols=38 Identities=26% Similarity=0.141 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCChhhhHHcCCccchh---hhcHHHHHHHHH
Q 016127 290 FCVVIAFIKDLHDVDGDKKFGIKTLSV---MLGKERVFRLSV 328 (394)
Q Consensus 290 ~~~~~~~i~d~~D~egD~~~Gi~Tlpv---~lG~k~a~~l~~ 328 (394)
.......+||+-|.|-|+++-++ =++ ++..+.++.+..
T Consensus 59 ~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~ 99 (292)
T PRK13595 59 FNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLR 99 (292)
T ss_pred HHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHH
Confidence 44566889999999999865443 343 344444444433
No 86
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=73.15 E-value=28 Score=33.61 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCChhhhHHcCCccchhhh---cHHHHHHHHHHHHHH
Q 016127 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML---GKERVFRLSVSMLSI 333 (394)
Q Consensus 287 ~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~l---G~k~a~~l~~~l~~~ 333 (394)
..+...+-..+||+-|+|-|++.. ++=|+.= .++.+......+..+
T Consensus 46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~ 94 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIV 94 (279)
T ss_pred HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHH
Confidence 344456668999999999999753 4445444 455555544433333
No 87
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=72.17 E-value=24 Score=34.33 Aligned_cols=36 Identities=22% Similarity=0.033 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhhccccccccC-CCCCcccccc
Q 016127 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (394)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~~~Dr~n-k~~RPlasG~ 185 (394)
.+...+....-..+|++-|+|.|+.. .|.-|.--|.
T Consensus 165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 34445556666799999999999974 4566665554
No 88
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=71.08 E-value=28 Score=33.46 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCChhhhHHcCCccchhhhc---HHHHHHHHHHH
Q 016127 288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSM 330 (394)
Q Consensus 288 ~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG---~k~a~~l~~~l 330 (394)
.+...+-..+||+-|.|-|+... +.=|+.-| ++.+......+
T Consensus 48 ~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l 92 (276)
T PRK12882 48 FLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILL 92 (276)
T ss_pred HHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHH
Confidence 34455667899999999999643 65666655 44444444433
No 89
>PRK08238 hypothetical protein; Validated
Probab=69.22 E-value=32 Score=36.16 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCChhhhHHcCC-ccchhhhc---HHHHHHHHHHHHHH
Q 016127 288 SCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLG---KERVFRLSVSMLSI 333 (394)
Q Consensus 288 ~~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv~lG---~k~a~~l~~~l~~~ 333 (394)
++...+..++||+-|+|.|++.-+ |.=|+.=| .+.+..+..++..+
T Consensus 236 ~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~ 285 (479)
T PRK08238 236 SLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLA 285 (479)
T ss_pred HHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344566679999999999998733 23344333 44444444433333
No 90
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=68.65 E-value=51 Score=32.19 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhhcccccccc-CCCCCcccccc
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr~-nk~~RPlasG~ 185 (394)
+..++-..+-..+|++.|+|.||. +.|.-|..-|+
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 344555556678999999999987 45677766665
No 91
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=66.86 E-value=55 Score=32.37 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhcccccccc-CCCCCcccccc
Q 016127 152 PAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (394)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~~~Dr~-nk~~RPlasG~ 185 (394)
..++....-..++++.|+|.|+. ..|.-|..-|.
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 34444445556678999999997 45677776665
No 92
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=65.49 E-value=26 Score=34.26 Aligned_cols=33 Identities=30% Similarity=0.163 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCChhhhHHcCC-ccchhhhcH
Q 016127 288 SCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (394)
Q Consensus 288 ~~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv~lG~ 320 (394)
.+...+-..+||+.|+|-|++..| +.=|+.-|+
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 334455679999999999998765 466766664
No 93
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=64.50 E-value=37 Score=33.13 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhhhccccccccCC-CCCcccccccC
Q 016127 150 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEIS 187 (394)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~~~Dr~nk-~~RPlasG~ls 187 (394)
.+..++...+-..+|++.|+|.|+... +.-|..-|+-+
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~ 210 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYA 210 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcccc
Confidence 344555666667899999999999743 55566555443
No 94
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=63.56 E-value=37 Score=33.17 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhhccccccccCCC-CCcccccccCHHHH
Q 016127 155 LMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTG 191 (394)
Q Consensus 155 l~~~a~~~~Nd~~D~~~Dr~nk~-~RPlasG~ls~~~a 191 (394)
+........|++-|+|.||.+.+ .-|. ++..+.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 44566778899999999998643 3333 4555555
No 95
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=62.42 E-value=43 Score=32.94 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChhhhHHcCC-ccchhhhcH
Q 016127 288 SCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (394)
Q Consensus 288 ~~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv~lG~ 320 (394)
++...+-..+||+-|+|-|++.-+ |.=|+.-|+
T Consensus 54 ~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 54 LAVSGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 344556679999999999998876 455655553
No 96
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=59.42 E-value=27 Score=33.80 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCChhhhHHcCC---ccchh-hhcHHHHHHHH
Q 016127 287 ISCFCVVIAFIKDLHDVDGDKKFGI---KTLSV-MLGKERVFRLS 327 (394)
Q Consensus 287 ~~~~~~~~~~i~d~~D~egD~~~Gi---~Tlpv-~lG~k~a~~l~ 327 (394)
..+...+-..+||+-|+|-|++..+ |.+|. ++.++.+..+.
T Consensus 45 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~ 89 (279)
T PRK12869 45 GTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVG 89 (279)
T ss_pred HHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHH
Confidence 3344566689999999999998654 33332 44455554443
No 97
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=53.54 E-value=1.6e+02 Score=28.78 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhhccccccccCC-CCCccccc
Q 016127 150 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG 184 (394)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~~~Dr~nk-~~RPlasG 184 (394)
+++.++-..+-.++.++.|+|.|+... +.-|.-=|
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 344444444445889999999999753 34444333
No 98
>PLN02878 homogentisate phytyltransferase
Probab=50.35 E-value=55 Score=31.97 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHhcCChhhhHHcCCccchhhhcH---HHHHHHHH
Q 016127 295 AFIKDLHDVDGDKKFGIKTLSVMLGK---ERVFRLSV 328 (394)
Q Consensus 295 ~~i~d~~D~egD~~~Gi~Tlpv~lG~---k~a~~l~~ 328 (394)
.-+||+.|+|=|| .+++..|+-=|+ +.+..+..
T Consensus 40 vglNd~~D~EIDk-INkP~rPIpSG~iS~~~a~~~~~ 75 (280)
T PLN02878 40 VGLNQLYDIEIDK-VNKPYLPLASGEFSVATGVAIVT 75 (280)
T ss_pred echhhhhhhcccc-cCCCCCCCCCCCCCHHHHHHHHH
Confidence 4589999999995 789999997774 33444443
No 99
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=50.10 E-value=50 Score=32.23 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCChhhhHHcCC-ccchh---hhcHHHHHHHHH
Q 016127 289 CFCVVIAFIKDLHDVDGDKKFGI-KTLSV---MLGKERVFRLSV 328 (394)
Q Consensus 289 ~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv---~lG~k~a~~l~~ 328 (394)
+...+-..+||+.|.|-|++..+ +.=|+ ++.++.+..+..
T Consensus 55 l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 98 (296)
T PRK04375 55 LVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGL 98 (296)
T ss_pred HHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 33455678999999999997543 22233 444555554443
No 100
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=49.48 E-value=78 Score=31.18 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCChhhhHHcCC-ccchh---hhcHHHHHHHHHHH
Q 016127 287 ISCFCVVIAFIKDLHDVDGDKKFGI-KTLSV---MLGKERVFRLSVSM 330 (394)
Q Consensus 287 ~~~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv---~lG~k~a~~l~~~l 330 (394)
..+...+-..+||+.|.|-|++..+ +.=|+ ++..+.+..+...+
T Consensus 56 ~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l 103 (306)
T PRK13362 56 LSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL 103 (306)
T ss_pred HHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 3344566789999999999987654 23344 44455554444433
No 101
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=48.29 E-value=2.5e+02 Score=27.49 Aligned_cols=31 Identities=19% Similarity=0.024 Sum_probs=18.2
Q ss_pred HHHHHhhccCCcccc-ccccc-cchhHHHHHHHH
Q 016127 221 WIFVGTAYSVQLPLL-RWKGN-SFLAAFCMVSLN 252 (394)
Q Consensus 221 ~~~l~~~Ys~~~Pp~-rlKr~-~~~~~~~~~~~~ 252 (394)
.+.+..+|.. +|.. +.|+. ...|.+..++.|
T Consensus 201 ~~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aai~~ 233 (303)
T COG1295 201 TLGFFLLYRF-LPNVRVLKWRDVLPGALLAAILF 233 (303)
T ss_pred HHHHHHHHHH-cCCccccchHHhhhhHHHHHHHH
Confidence 3566788887 7876 34433 445655555544
No 102
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=46.20 E-value=1.2e+02 Score=29.13 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCChhhhHHcCC-ccchh---hhcHHHHHHHHH
Q 016127 288 SCFCVVIAFIKDLHDVDGDKKFGI-KTLSV---MLGKERVFRLSV 328 (394)
Q Consensus 288 ~~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv---~lG~k~a~~l~~ 328 (394)
.+...+-..+||+-|.|-|++..+ +.=|+ ++..+.+..+..
T Consensus 45 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 89 (280)
T TIGR01473 45 TLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGL 89 (280)
T ss_pred HHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHH
Confidence 344556689999999999997443 33344 334455555444
No 103
>PLN02776 prenyltransferase
Probab=44.74 E-value=1.5e+02 Score=29.73 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHcCC-ccchh---hhcHHHHHHHHH
Q 016127 286 FISCFCVVIAFIKDLHDVDGDKKFGI-KTLSV---MLGKERVFRLSV 328 (394)
Q Consensus 286 ~~~~~~~~~~~i~d~~D~egD~~~Gi-~Tlpv---~lG~k~a~~l~~ 328 (394)
...+...+-..+||+-|+|-|++..+ +.=|+ ++..+.+..+..
T Consensus 37 g~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~ 83 (341)
T PLN02776 37 GTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAV 83 (341)
T ss_pred HHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 33444566689999999999988554 23344 444444544433
No 104
>PRK01637 hypothetical protein; Reviewed
Probab=44.50 E-value=3e+02 Score=26.55 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhhccccccc
Q 016127 151 VPAVLMHIYVVAINQLSDVEVDK 173 (394)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~~~Dr 173 (394)
.+...++.....+|++++.+++|
T Consensus 104 sa~~~~~~l~~a~N~i~~~~~~R 126 (286)
T PRK01637 104 VALMLISSIDKALNTIWRSKRKR 126 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC
Confidence 34445666677899999876543
No 105
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=41.32 E-value=3.6e+02 Score=26.58 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=16.9
Q ss_pred HhhhhccccccccCC-CCCccccccc
Q 016127 162 AINQLSDVEVDKVNK-PYLPLASGEI 186 (394)
Q Consensus 162 ~~Nd~~D~~~Dr~nk-~~RPlasG~l 186 (394)
++.+.-|+|.||... +.-|..-|.-
T Consensus 190 iiYa~qD~e~D~~~Gl~Slpv~fG~~ 215 (300)
T PRK12876 190 IIYAIQDLEFDRKEGLFSIPARFGEK 215 (300)
T ss_pred HHHHHcCHhhHHHcCCccchHHHCch
Confidence 566789999999753 4556544443
No 106
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=34.69 E-value=36 Score=31.43 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCChhhhH----------HcCCccchhhhcHHHH
Q 016127 290 FCVVIAFIKDLHDVDGDK----------KFGIKTLSVMLGKERV 323 (394)
Q Consensus 290 ~~~~~~~i~d~~D~egD~----------~~Gi~Tlpv~lG~k~a 323 (394)
...++.+.+|++|..+|. +.|+.|+|..+..+..
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~ 201 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERA 201 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHH
Confidence 356678999999998888 8999999999984443
No 107
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=29.62 E-value=3e+02 Score=22.11 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q 016127 292 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLAN 350 (394)
Q Consensus 292 ~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~~~~~~g~~~~~~~~ 350 (394)
++.+++.+++.- +..+.|.--++..-|+| +...++..+|+-+...|...+..|.
T Consensus 19 L~~mtvwe~~~P-~~~R~GfLpi~TTRGDR----LFIsLL~sA~I~L~Wlgl~~~~lW~ 72 (88)
T PF09928_consen 19 LAGMTVWEIRSP-TVERKGFLPIETTRGDR----LFISLLGSAFIHLAWLGLVGPSLWI 72 (88)
T ss_pred HHHHHHHHhcCC-CCCcCceecccCCCcch----hHHHHHHHHHHHHHHHHhcCccHHH
Confidence 444667777777 77788998888888886 5555778888888888887765443
No 108
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=25.17 E-value=3.7e+02 Score=23.51 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=12.7
Q ss_pred CcccccccCHHHHHH
Q 016127 179 LPLASGEISMGTGIA 193 (394)
Q Consensus 179 RPlasG~ls~~~a~~ 193 (394)
-|+++|+++.++...
T Consensus 59 vPiAtGki~~~~l~~ 73 (140)
T PF04284_consen 59 VPIATGKIGFKDLLN 73 (140)
T ss_pred ccccCCCcCHHHHHH
Confidence 699999999998754
No 109
>PRK10581 geranyltranstransferase; Provisional
Probab=25.07 E-value=81 Score=30.96 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCChhh-----------hHHcCCccchhhhcHHHHHHHHHHH
Q 016127 287 ISCFCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (394)
Q Consensus 287 ~~~~~~~~~~i~d~~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~l 330 (394)
..-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+....--.
T Consensus 212 g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~ 266 (299)
T PRK10581 212 AESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDL 266 (299)
T ss_pred HHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3344667788999999754 5778999999999988777665433
No 110
>PRK11383 hypothetical protein; Provisional
Probab=24.55 E-value=4.8e+02 Score=22.88 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChhhhH
Q 016127 292 VVIAFIKDLHDVDGDK 307 (394)
Q Consensus 292 ~~~~~i~d~~D~egD~ 307 (394)
.++.+.|+.||...++
T Consensus 117 gai~vQKn~RD~~~~~ 132 (145)
T PRK11383 117 GAVAVQKNIRDAGINP 132 (145)
T ss_pred HHHHHHhhhhhhhhcc
Confidence 4567889999985543
No 111
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.23 E-value=2.8e+02 Score=21.46 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016127 319 GKERVFRLSVSMLSIAYGAAVVVGASSP 346 (394)
Q Consensus 319 G~k~a~~l~~~l~~~a~~~~~~~g~~~~ 346 (394)
|+|.+-++...++.++.++..+.|+...
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677766766666666566667776654
No 112
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=20.59 E-value=5.4e+02 Score=21.98 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=42.0
Q ss_pred ccchhHHHHHHHHHHHHHHHH------chhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016127 92 DHSNSFLNVFLKKFHALYRFM------RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQ 165 (394)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~l~------Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~~Nd 165 (394)
...++.+++....++....+. |-|.+...+ ....+..+. .+.. .. +.++..+++-...-.+|.
T Consensus 6 ~g~~rl~~a~~ys~~Gl~~a~~~E~afR~e~~~~~~-~i~~~~~l~------~~~~---e~-lll~~si~lvl~vEllNT 74 (123)
T COG0818 6 TGFRRLIKAFGYSLKGLKAAWKEEAAFRQELLAALV-ALVLAFFLG------VSAI---EW-LLLILSIFLVLIVELLNT 74 (123)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHhC------CcHH---HH-HHHHHHHHHHHHHHHHHH
Confidence 345677777666665555444 444333322 222233332 1111 11 123344555666778888
Q ss_pred hccccccccCCCCCccc
Q 016127 166 LSDVEVDKVNKPYLPLA 182 (394)
Q Consensus 166 ~~D~~~Dr~nk~~RPla 182 (394)
-.+.-.|+..+.+.|++
T Consensus 75 AIEa~VD~~s~e~hela 91 (123)
T COG0818 75 AIEAVVDLISPEYHELA 91 (123)
T ss_pred HHHHHHHHcccchhHHH
Confidence 88888888866566654
Done!