Query 016127
Match_columns 394
No_of_seqs 385 out of 2092
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kra_B Geranyl diphosphate syn 33.4 1E+02 0.0035 28.4 7.4 47 290-336 72-118 (274)
2 3lsn_A Geranyltranstransferase 29.1 31 0.0011 32.6 3.0 43 289-331 214-267 (304)
3 3lom_A Geranyltranstransferase 27.3 32 0.0011 32.7 2.7 42 289-330 221-273 (313)
4 3ts7_A Geranyltranstransferase 26.9 37 0.0013 32.4 3.1 41 290-330 221-272 (324)
5 3m0g_A Farnesyl diphosphate sy 26.3 35 0.0012 32.1 2.8 43 288-330 206-259 (297)
6 3p8r_A Geranyltranstransferase 24.5 37 0.0013 32.0 2.6 41 290-330 221-272 (302)
7 3p8l_A Geranyltranstransferase 23.7 41 0.0014 31.7 2.7 44 290-333 218-272 (302)
8 4f62_A Geranyltranstransferase 23.2 51 0.0018 31.3 3.3 45 283-327 207-262 (317)
9 3llw_A Geranyltranstransferase 22.1 90 0.0031 29.4 4.8 43 288-330 220-271 (311)
10 2h8o_A Geranyltranstransferase 21.1 47 0.0016 31.8 2.6 41 290-330 254-305 (335)
11 3pde_A Farnesyl-diphosphate sy 20.6 94 0.0032 29.3 4.6 45 290-334 217-272 (309)
No 1
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=33.43 E-value=1e+02 Score=28.41 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 016127 290 FCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (394)
Q Consensus 290 ~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (394)
.-.+..+..|+++.++|.+.|++|.=.++|+..+....-.++..++-
T Consensus 72 iH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 72 VHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 33455678899944445579999999999998776555555444443
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=29.09 E-value=31 Score=32.61 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChhh-----------hHHcCCccchhhhcHHHHHHHHHHHH
Q 016127 289 CFCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSML 331 (394)
Q Consensus 289 ~~~~~~~~i~d~~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~l~ 331 (394)
-..+++.+..|+.|..+ |.+.|+.|+|+++|.+.++...--+.
T Consensus 214 ~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 267 (304)
T 3lsn_A 214 AIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELR 267 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 34566788888888865 66789999999999998877766443
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=27.33 E-value=32 Score=32.68 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCChhh-----------hHHcCCccchhhhcHHHHHHHHHHH
Q 016127 289 CFCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (394)
Q Consensus 289 ~~~~~~~~i~d~~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~l 330 (394)
-..+++.+..|+.|..+ |.+.|+.|+|+++|.+.++...--+
T Consensus 221 ~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~ 273 (313)
T 3lom_A 221 HIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVH 273 (313)
T ss_dssp HHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 34566677888877754 6788999999999999887776644
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=26.86 E-value=37 Score=32.41 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChhh-----------hHHcCCccchhhhcHHHHHHHHHHH
Q 016127 290 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (394)
Q Consensus 290 ~~~~~~~i~d~~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~l 330 (394)
..+++.+..|+.|..+ |.+.|+.|+|+++|.+.++...--.
T Consensus 221 lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 272 (324)
T 3ts7_A 221 IGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM 272 (324)
T ss_dssp HHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 3456677777777754 7788999999999999888776644
No 5
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=26.31 E-value=35 Score=32.12 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCChhh-----------hHHcCCccchhhhcHHHHHHHHHHH
Q 016127 288 SCFCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (394)
Q Consensus 288 ~~~~~~~~~i~d~~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~l 330 (394)
.-..+++.+..|+.|..+ |.+.|+.|+|+++|.+.++...--+
T Consensus 206 ~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 259 (297)
T 3m0g_A 206 TALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADL 259 (297)
T ss_dssp HHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 334566788999999865 6678999999999998887766544
No 6
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=24.46 E-value=37 Score=32.02 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCChhh-----------hHHcCCccchhhhcHHHHHHHHHHH
Q 016127 290 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (394)
Q Consensus 290 ~~~~~~~i~d~~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~l 330 (394)
..+++.+..|+.|..+ |.+.|+.|+|+++|.+.++...--.
T Consensus 221 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 272 (302)
T 3p8r_A 221 VGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTL 272 (302)
T ss_dssp HHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 3455667777777644 6788999999999999887766544
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=23.73 E-value=41 Score=31.72 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChh-----------hhHHcCCccchhhhcHHHHHHHHHHHHHH
Q 016127 290 FCVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (394)
Q Consensus 290 ~~~~~~~i~d~~D~e-----------gD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 333 (394)
..+++.+..|+.|.. .|.+.|+.|+|+++|.+.++...--+..-
T Consensus 218 lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~ 272 (302)
T 3p8l_A 218 YGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAE 272 (302)
T ss_dssp HHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 355667777887774 47888999999999999988776644333
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=23.17 E-value=51 Score=31.29 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCh-----------hhhHHcCCccchhhhcHHHHHHHH
Q 016127 283 ATAFISCFCVVIAFIKDLHDV-----------DGDKKFGIKTLSVMLGKERVFRLS 327 (394)
Q Consensus 283 l~~~~~~~~~~~~~i~d~~D~-----------egD~~~Gi~Tlpv~lG~k~a~~l~ 327 (394)
+.-+..-..+++.+..|+.|. -.|.+.|+.|+|+++|.+.++...
T Consensus 207 l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a 262 (317)
T 4f62_A 207 LDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALV 262 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHH
No 9
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=22.07 E-value=90 Score=29.44 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCChhhhH---------HcCCccchhhhcHHHHHHHHHHH
Q 016127 288 SCFCVVIAFIKDLHDVDGDK---------KFGIKTLSVMLGKERVFRLSVSM 330 (394)
Q Consensus 288 ~~~~~~~~~i~d~~D~egD~---------~~Gi~Tlpv~lG~k~a~~l~~~l 330 (394)
.-..+++.+..|+.|..+|. +.|+.|+|+++|.+.+....--+
T Consensus 220 ~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~ 271 (311)
T 3llw_A 220 LKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTL 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 33456678888998888765 57999999999999887665544
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=21.15 E-value=47 Score=31.78 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCChhh-----------hHHcCCccchhhhcHHHHHHHHHHH
Q 016127 290 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (394)
Q Consensus 290 ~~~~~~~i~d~~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~l 330 (394)
..+++.+..|+.|+.+ |.+.|+.|+|+++|.+.++...--.
T Consensus 254 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~ 305 (335)
T 2h8o_A 254 IGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQ 305 (335)
T ss_dssp HHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 3556677888877754 6678999999999988777666543
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=20.63 E-value=94 Score=29.33 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCChh-----------hhHHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127 290 FCVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (394)
Q Consensus 290 ~~~~~~~i~d~~D~e-----------gD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 334 (394)
..+++.+..|+.|.. .|.+.|+.|+|+++|-+.+....--++.-+
T Consensus 217 lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a 272 (309)
T 3pde_A 217 FGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSG 272 (309)
T ss_dssp HHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHH
Confidence 345667777887774 477889999999999998876655443333
Done!