Query 016127
Match_columns 394
No_of_seqs 385 out of 2092
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 08:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016127.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016127hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 69.5 13 0.00097 32.4 10.3 56 150-206 67-122 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 31.6 54 0.0039 28.2 7.5 52 285-336 71-123 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 23.2 90 0.0065 26.5 7.3 48 287-334 70-118 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 20.3 19 0.0014 31.4 2.0 56 149-205 69-124 (299)
5 d1v4ea_ a.128.1.1 (A:) Octopre 16.0 1.2E+02 0.0091 25.4 6.5 48 286-334 61-108 (280)
6 d2ghfa2 g.37.1.1 (A:9-44) Zinc 9.9 41 0.003 19.5 0.7 15 6-20 7-21 (36)
7 d2q80a1 a.128.1.1 (A:6-296) Ge 9.7 48 0.0035 28.5 1.5 29 290-318 175-214 (291)
8 d1nuba2 g.3.11.3 (A:53-77) Dom 7.8 91 0.0066 16.6 1.5 14 53-66 2-15 (26)
9 d1fpsa_ a.128.1.1 (A:) Farnesy 7.8 49 0.0036 29.2 0.6 32 290-321 230-271 (348)
10 d1v4ea_ a.128.1.1 (A:) Octopre 7.4 49 0.0036 28.3 0.4 33 290-322 188-230 (280)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=69.53 E-value=13 Score=32.36 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhhhccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH
Q 016127 150 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206 (394)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l~ 206 (394)
..+.=+++.+.-+.+|+.|.|.|.. +|.+|-.........+...+-.+...++-+.
T Consensus 67 A~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~ 122 (290)
T d1rtra_ 67 AIALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFELI 122 (290)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHHH
Confidence 3445578999999999998887764 3355555555556666555555544444443
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=31.64 E-value=54 Score=28.23 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhcCChhh-hHHcCCccchhhhcHHHHHHHHHHHHHHHHH
Q 016127 285 AFISCFCVVIAFIKDLHDVDG-DKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (394)
Q Consensus 285 ~~~~~~~~~~~~i~d~~D~eg-D~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (394)
+.+=+.-.+..+..|++|.+. |.+.|.+|.-..+|...+....-.++..++-
T Consensus 71 ~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~ 123 (299)
T d1rqja_ 71 AAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_dssp HHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHH
Confidence 333334455567789998887 5899999999999999886666555444443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=23.17 E-value=90 Score=26.53 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCChhhh-HHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127 287 ISCFCVVIAFIKDLHDVDGD-KKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (394)
Q Consensus 287 ~~~~~~~~~~i~d~~D~egD-~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 334 (394)
+=+.-.+..+..|++|+++| .+.|++|.-.++|.+.+....-.++..+
T Consensus 70 vEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a 118 (290)
T d1rtra_ 70 LEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKA 118 (290)
T ss_dssp HHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHH
Confidence 33334555677899988775 6899999999999987766555443333
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=20.34 E-value=19 Score=31.38 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 016127 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205 (394)
Q Consensus 149 ~~la~~l~~~a~~~~Nd~~D~~~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l 205 (394)
...+.=++|.+.-+.+|+.|.|.|.. +|.+|-.--......|...+-.++..++-+
T Consensus 69 ~A~aiEllH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 69 PAAAVECIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 34455579999999999999887643 233444334455566655555554444443
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=15.98 E-value=1.2e+02 Score=25.43 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHH
Q 016127 286 FISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (394)
Q Consensus 286 ~~~~~~~~~~~i~d~~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 334 (394)
.+=+.-.+..+..|+.| ++|.+.|.+|.-..+|...+....-.++..+
T Consensus 61 aiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a 108 (280)
T d1v4ea_ 61 ALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSA 108 (280)
T ss_dssp HHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhh
Confidence 33333344566778877 5788999999999999988766555444443
No 6
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.91 E-value=41 Score=19.50 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=11.2
Q ss_pred ccccccccccccccc
Q 016127 6 LSSSFSLKYHPLQKA 20 (394)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (394)
+...|.-||||.|-+
T Consensus 7 ~qGGyECKYC~f~Tq 21 (36)
T d2ghfa2 7 VEGGYECKYCTFQTP 21 (36)
T ss_dssp CCSSEECSSCSCEES
T ss_pred ccCCeeeeecCcccc
Confidence 345678899999865
No 7
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.69 E-value=48 Score=28.46 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChh-----------hhHHcCCccchhhh
Q 016127 290 FCVVIAFIKDLHDVD-----------GDKKFGIKTLSVML 318 (394)
Q Consensus 290 ~~~~~~~i~d~~D~e-----------gD~~~Gi~Tlpv~l 318 (394)
+.+++.+..|+.|.. .|.+.|+.|+|+.+
T Consensus 175 lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~ 214 (291)
T d2q80a1 175 LGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIH 214 (291)
T ss_dssp HHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHH
No 8
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.81 E-value=91 Score=16.58 Aligned_cols=14 Identities=0% Similarity=-0.235 Sum_probs=9.8
Q ss_pred cccccccceeeecc
Q 016127 53 NSFYNLTNKIASSR 66 (394)
Q Consensus 53 ~~~~~~~~~~~~~~ 66 (394)
+-|+||+|.--|.+
T Consensus 2 pclnhhck~gkvce 15 (26)
T d1nuba2 2 PCQNHHCKHGKVCE 15 (26)
T ss_dssp TTTTCCCCTTEEEE
T ss_pred cccccccccCcEee
Confidence 56899988765444
No 9
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.78 E-value=49 Score=29.19 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCChhh----------hHHcCCccchhhhcHH
Q 016127 290 FCVVIAFIKDLHDVDG----------DKKFGIKTLSVMLGKE 321 (394)
Q Consensus 290 ~~~~~~~i~d~~D~eg----------D~~~Gi~Tlpv~lG~k 321 (394)
...++.+..|+.|..+ |.+.|++|+|+.+..+
T Consensus 230 lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~ 271 (348)
T d1fpsa_ 230 MGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQ 271 (348)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHH
T ss_pred cchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHH
Confidence 3556677888777654 7788999999999754
No 10
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=7.41 E-value=49 Score=28.27 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChh----------hhHHcCCccchhhhcHHH
Q 016127 290 FCVVIAFIKDLHDVD----------GDKKFGIKTLSVMLGKER 322 (394)
Q Consensus 290 ~~~~~~~i~d~~D~e----------gD~~~Gi~Tlpv~lG~k~ 322 (394)
...++.+..|+.|.. .|.+.|+.|+|++++.+.
T Consensus 188 lG~afQi~DD~ld~~~~~~~GK~~g~Dl~~gK~T~p~i~al~~ 230 (280)
T d1v4ea_ 188 IGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 230 (280)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhcccchhhHhCCCccHHHHHHHHh
Done!