BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016128
(394 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1PFA6|PP144_ARATH Pentatricopeptide repeat-containing protein At2g02750
OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2
Length = 613
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/390 (63%), Positives = 310/390 (79%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M++ S+EPN VTF++ I+ACASLL LQ+GRQ+HGL +K E Q +TM+GTAL+DMY KC
Sbjct: 221 MRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCR 280
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
C A+ VF ELK +RN+++WN++I+GMM+NG+ E A+ELFE L EG KPD ATWNS+I
Sbjct: 281 CWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLI 340
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGFSQLG EAFK FE+M S MVPSLKC+TS+LSAC+D+ LK GKE HGHVI+A
Sbjct: 341 SGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAE 400
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+D + T+LI MYMKCG SWARR FD+FE KP DP FWN MISGYG++GE ESA+EIF+
Sbjct: 401 RDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFE 460
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
L+++EKV+P+ A+F AVLSAC H G+V+K QIF +M +++G KP EH GCM+DLLGRS
Sbjct: 461 LLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRS 520
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
GRL EA+E+I ++ EP+ SVY SLLG+C HL+ LGEE AMKL E+EPENP PFVILS+
Sbjct: 521 GRLREAKEVIDQMSEPSSSVYSSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSS 580
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IYA L RWEDV IRQ+I+ +QL KLPG+S
Sbjct: 581 IYAALERWEDVESIRQVIDQKQLVKLPGLS 610
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 42/259 (16%)
Query: 5 LSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC 64
LS PN TF ++ +CA L + GR +H +K D TALV MY+K +
Sbjct: 25 LSHSPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTD 84
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
A V E+ R I + N ++G++ N GF
Sbjct: 85 ALKVLDEMP-ERGIASVNAAVSGLLEN------------------------------GFC 113
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
+ +AF++F + +G + V SVL C D+ G + H +++ +
Sbjct: 114 R-----DAFRMFGDARVSGSGMNSVTVASVLGGCGDIEG---GMQLHCLAMKSGFEMEVY 165
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
+ T+L+SMY +CG+ A R F++ + +NA ISG NG +F+LM++
Sbjct: 166 VGTSLVSMYSRCGEWVLAARMFEK--VPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRK 223
Query: 245 -EKVKPNSASFVAVLSACG 262
+PN +FV ++AC
Sbjct: 224 FSSEEPNDVTFVNAITACA 242
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 10/212 (4%)
Query: 154 VLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKP 213
+L +CA L + G+ H V++ D ATAL+SMYMK Q + A + D E+
Sbjct: 37 LLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLD--EMPE 94
Query: 214 DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQI 273
A NA +SG NG A +F + NS + +VL C G ++ +Q+
Sbjct: 95 RGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDIEGGMQL 151
Query: 274 FTM-MDDDFGLKPKQEHFGC-MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCH 331
+ M F + + + G +V + R G A + ++P +V Y++ + +
Sbjct: 152 HCLAMKSGFEM---EVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMEN 208
Query: 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363
+L + +++ E P ++ I A
Sbjct: 209 GVMNLVPSVFNLMRKFSSEEPNDVTFVNAITA 240
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 279 bits (714), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 231/391 (59%), Gaps = 15/391 (3%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEK-QSDTMIGTALVDMYLKCGCLPCAH 66
EP+ VT SVISACASL ++ G++VHG +K +K ++D ++ A VDMY KC + A
Sbjct: 250 EPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEAR 309
Query: 67 NVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL 126
+F + RN++ +MI+G + ++ A +F +A + +WN++I+G++Q
Sbjct: 310 FIFDSMP-IRNVIAETSMISGYAMAASTKAARLMFTKMAER----NVVSWNALIAGYTQN 364
Query: 127 GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN------ 180
G EA LF ++ + P+ ++L ACADL+ L LG + H HV++
Sbjct: 365 GENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEE 424
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
D + +LI MY+KCG F + + D WNAMI G+ +NG A+E+F
Sbjct: 425 DDIFVGNSLIDMYVKCGCVEEGYLVFRK--MMERDCVSWNAMIIGFAQNGYGNEALELFR 482
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
M + KP+ + + VLSACGHAG V++ F+ M DFG+ P ++H+ CMVDLLGR+
Sbjct: 483 EMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRA 542
Query: 301 GRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359
G L+EA+ +I E+P +P ++ SLL AC H N LG+ +A KL E+EP N P+V+LS
Sbjct: 543 GFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLS 602
Query: 360 NIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
N+YA LG+WEDV +R+ + +TK PG S
Sbjct: 603 NMYAELGKWEDVMNVRKSMRKEGVTKQPGCS 633
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 8/322 (2%)
Query: 5 LSDEPNSVTFISVISAC-ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLP 63
LS +S F ++ +C S L + R VH +K ++ I L+D Y KCG L
Sbjct: 13 LSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLE 72
Query: 64 CAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123
VF ++ RNI TWN+++ G+ G ++A LF + D TWNSM+SGF
Sbjct: 73 DGRQVFDKMP-QRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER----DQCTWNSMVSGF 127
Query: 124 SQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDE 183
+Q EA F M G V + SVLSAC+ L+ + G + H + ++ D
Sbjct: 128 AQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDV 187
Query: 184 SMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243
+ +AL+ MY KCG + A+R FD E+ + WN++I+ + +NG A+++F +M
Sbjct: 188 YIGSALVDMYSKCGNVNDAQRVFD--EMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRL 303
+ +V+P+ + +V+SAC + ++ + + L+ VD+ + R+
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 304 DEARELIRELPEPTVSVYHSLL 325
EAR + +P V S++
Sbjct: 306 KEARFIFDSMPIRNVIAETSMI 327
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 278 bits (712), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 222/381 (58%), Gaps = 8/381 (2%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ TF + +CASL G+QVHG K + + AL+DMY+K L AH V
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F E+ R++++WN++++G G+ +KA +GL H +W +MISG++ +G
Sbjct: 167 FDEMY-ERDVISWNSLLSGYARLGQMKKA----KGLFHLMLDKTIVSWTAMISGYTGIGC 221
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA F +MQ G+ P + SVL +CA L +L+LGK H + R K + A
Sbjct: 222 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNA 281
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY KCG S A + F Q E K D W+ MISGY +G A+E F+ MQ+ KVK
Sbjct: 282 LIEMYSKCGVISQAIQLFGQMEGK--DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVK 339
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
PN +F+ +LSAC H G + L+ F MM D+ ++PK EH+GC++D+L R+G+L+ A E
Sbjct: 340 PNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVE 399
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
+ + +P +P ++ SLL +C N D+ L E+EPE+ +V+L+NIYA LG+
Sbjct: 400 ITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGK 459
Query: 368 WEDVGRIRQMINDRQLTKLPG 388
WEDV R+R+MI + + K PG
Sbjct: 460 WEDVSRLRKMIRNENMKKTPG 480
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 123/247 (49%), Gaps = 14/247 (5%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
EP+ ++ ISV+ +CA L L+ G+ +H + T + AL++MY KCG + A
Sbjct: 238 EPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQ 297
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
+F +++G +++++W+TMI+G +G + A+E F + KP+ T+ ++S S +G
Sbjct: 298 LFGQMEG-KDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVG 356
Query: 128 MRFEAFKLFEKM-QSTGMVPSLK---CVTSVLSACADLS-ALKLGKETHGHVIRADLNKD 182
M E + F+ M Q + P ++ C+ VL+ L A+++ K + D
Sbjct: 357 MWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTM-------PMKPD 409
Query: 183 ESMATALISMYMKCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241
+ +L+S G A D E++P+D + + + Y G++E + +
Sbjct: 410 SKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKM 469
Query: 242 MQQEKVK 248
++ E +K
Sbjct: 470 IRNENMK 476
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 223/387 (57%), Gaps = 43/387 (11%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+PN TF +V+++C L G+Q+HGL +K S +G++L+DMY K G +
Sbjct: 150 KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQI----- 204
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
++A E+FE L D + ++I+G++QLG
Sbjct: 205 ---------------------------KEAREIFECLPER----DVVSCTAIIAGYAQLG 233
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
+ EA ++F ++ S GM P+ S+L+A + L+ L GK+ H HV+R +L +
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN 293
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAF-WNAMISGYGRNGEYESAVEIFDLMQQEK 246
+LI MY KCG S+ARR FD P+ A WNAM+ GY ++G +E+F LM+ EK
Sbjct: 294 SLIDMYSKCGNLSYARRLFDNM---PERTAISWNAMLVGYSKHGLGREVLELFRLMRDEK 350
Query: 247 -VKPNSASFVAVLSACGHAGHVDKALQIFT-MMDDDFGLKPKQEHFGCMVDLLGRSGRLD 304
VKP++ + +AVLS C H D L IF M+ ++G KP EH+GC+VD+LGR+GR+D
Sbjct: 351 RVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRID 410
Query: 305 EARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363
EA E I+ +P +PT V SLLGAC HL+ D+GE + +L E+EPEN +VILSN+YA
Sbjct: 411 EAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYA 470
Query: 364 GLGRWEDVGRIRQMINDRQLTKLPGIS 390
GRW DV +R M+ + +TK PG S
Sbjct: 471 SAGRWADVNNVRAMMMQKAVTKEPGRS 497
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 113/270 (41%), Gaps = 20/270 (7%)
Query: 104 LAHEGFKPDPATWN-SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162
L H F P + I SQL + +M G ++L+AC D
Sbjct: 7 LIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKR 66
Query: 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM 222
AL+ G+ H H+I+ + T L+ Y KC AR+ D E+ + W AM
Sbjct: 67 ALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLD--EMPEKNVVSWTAM 124
Query: 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFG 282
IS Y + G A+ +F M + KPN +F VL++C A + QI G
Sbjct: 125 ISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI-------HG 177
Query: 283 LKPK---QEHF---GCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDL 336
L K H ++D+ ++G++ EARE+ LPE V V + + A + L D
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDV-VSCTAIIAGYAQLGLD- 235
Query: 337 GEEMAMKLQEMEPENPTP-FVILSNIYAGL 365
EE + E +P +V +++ L
Sbjct: 236 -EEALEMFHRLHSEGMSPNYVTYASLLTAL 264
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 267 bits (683), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 195/316 (61%), Gaps = 7/316 (2%)
Query: 76 RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKL 135
RN+ TWNTMI G G+ +A LF+ + K DP +W +MI+G+SQ G FEA +L
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMP----KRDPVSWAAMIAGYSQSGHSFEALRL 396
Query: 136 FEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK 195
F +M+ G + +S LS CAD+ AL+LGK+ HG +++ + AL+ MY K
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456
Query: 196 CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255
CG A F E+ D WN MI+GY R+G E A+ F+ M++E +KP+ A+ V
Sbjct: 457 CGSIEEANDLFK--EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMV 514
Query: 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP- 314
AVLSAC H G VDK Q F M D+G+ P +H+ CMVDLLGR+G L++A L++ +P
Sbjct: 515 AVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPF 574
Query: 315 EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRI 374
EP +++ +LLGA H N++L E A K+ MEPEN +V+LSN+YA GRW DVG++
Sbjct: 575 EPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKL 634
Query: 375 RQMINDRQLTKLPGIS 390
R + D+ + K+PG S
Sbjct: 635 RVRMRDKGVKKVPGYS 650
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 125/244 (51%), Gaps = 12/244 (4%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
N +F S +S CA ++ L+ G+Q+HG +K ++ +G AL+ MY KCG + A+++F
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 467
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
+E+ G ++I++WNTMIAG +G E A+ FE + EG KPD AT +++S S G+
Sbjct: 468 KEMAG-KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526
Query: 130 FEAFKLFEKM-QSTGMVPSLK---CVTSVLSACADLSALKLGKETHGHVIRADLNKDESM 185
+ + F M Q G++P+ + C+ +L L ++ H + D ++
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG------LLEDAHNLMKNMPFEPDAAI 580
Query: 186 ATALISMYMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
L+ G A D+ F ++P++ + + + Y +G + ++ M+
Sbjct: 581 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640
Query: 245 EKVK 248
+ VK
Sbjct: 641 KGVK 644
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 29/303 (9%)
Query: 26 YLQFGRQVHGL-TLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTM 84
Y++ GR L K + ++ ++ YL+ G A +F E+ R++++WN M
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP-ERDLVSWNVM 132
Query: 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM 144
I G + N KA ELFE + D +WN+M+SG++Q G +A +F++M
Sbjct: 133 IKGYVRNRNLGKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDARSVFDRMPEKND 188
Query: 145 VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARR 204
V ++LSA S + E + ++ N L+ ++K + AR+
Sbjct: 189 VS----WNALLSAYVQNSKM----EEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQ 240
Query: 205 FFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA 264
FFD ++ D WN +I+GY ++G+ + A ++FD E + ++ A++S
Sbjct: 241 FFDSMNVR--DVVSWNTIITGYAQSGKIDEARQLFD----ESPVQDVFTWTAMVSGYIQN 294
Query: 265 GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG--RSGRLDEARELIRELPEPTVSVYH 322
V++A ++F M P++ L G + R++ A+EL +P VS ++
Sbjct: 295 RMVEEARELFDKM-------PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWN 347
Query: 323 SLL 325
+++
Sbjct: 348 TMI 350
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 120/284 (42%), Gaps = 30/284 (10%)
Query: 74 GSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAF 133
G +I WN I+ M GR +A+ +F+ + + ++N MISG+ + G A
Sbjct: 60 GDSDIKEWNVAISSYMRTGRCNEALRVFKRMP----RWSSVSYNGMISGYLRNGEFELAR 115
Query: 134 KLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY 193
KLF++M P V+ + + LGK I + +D ++S Y
Sbjct: 116 KLFDEM------PERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--RDVCSWNTMLSGY 167
Query: 194 MKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA- 252
+ G AR FD+ K D WNA++S Y +N + E A +F K + N A
Sbjct: 168 AQNGCVDDARSVFDRMPEKND--VSWNALLSAYVQNSKMEEACMLF------KSRENWAL 219
Query: 253 -SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIR 311
S+ +L + +A Q F M+ + ++ +SG++DEAR+L
Sbjct: 220 VSWNCLLGGFVKKKKIVEARQFFDSMN-----VRDVVSWNTIITGYAQSGKIDEARQLFD 274
Query: 312 ELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPF 355
E P V + +++ ++ + + EE +M N +
Sbjct: 275 ESPVQDVFTWTAMVSG---YIQNRMVEEARELFDKMPERNEVSW 315
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQV-HGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAH 66
+P+ T ++V+SAC+ + GRQ + +T ++ +VD+ + G L AH
Sbjct: 507 KPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAH 566
Query: 67 NVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDP 113
N+ + + + W T++ ++G + EL E A + F +P
Sbjct: 567 NLMKNMPFEPDAAIWGTLLGASRVHGNT----ELAETAADKIFAMEP 609
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 265 bits (678), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/417 (35%), Positives = 218/417 (52%), Gaps = 37/417 (8%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
P+ TF V+ AC+ + GR++HG K+ S +G LV MY KCG L A
Sbjct: 137 RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPAT------------ 115
V E+ R++++WN+++ G N R + A+E+ + D T
Sbjct: 197 VLDEM-SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT 255
Query: 116 ---------------------WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV 154
WN MI + + M EA +L+ +M++ G P +TSV
Sbjct: 256 TENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSV 315
Query: 155 LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD 214
L AC D SAL LGK+ HG++ R L + + ALI MY KCG AR F+ +K
Sbjct: 316 LPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFEN--MKSR 373
Query: 215 DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274
D W AMIS YG +G AV +F +Q + P+S +FV L+AC HAG +++ F
Sbjct: 374 DVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCF 433
Query: 275 TMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLN 333
+M D + + P+ EH CMVDLLGR+G++ EA I+++ EP V+ +LLGAC H +
Sbjct: 434 KLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSD 493
Query: 334 SDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
+D+G A KL ++ PE +V+LSNIYA GRWE+V IR ++ + L K PG S
Sbjct: 494 TDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGAS 550
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 38/234 (16%)
Query: 31 RQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMML 90
R VH + + + ++ +G L+ Y + A VF E+ RN++ N MI +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIP-ERNVIIINVMIRSYVN 117
Query: 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKC 150
NG F G E K+F M + P
Sbjct: 118 NG--------FYG---------------------------EGVKVFGTMCGCNVRPDHYT 142
Query: 151 VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFE 210
VL AC+ + +G++ HG + L+ + L+SMY KCG S AR D E
Sbjct: 143 FPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD--E 200
Query: 211 IKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA 264
+ D WN+++ GY +N ++ A+E+ M+ K+ ++ + ++L A +
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 17/209 (8%)
Query: 128 MRFEAFKLFEKMQSTGMVPSLKC-----------VTSVLSACADLSALKLGKETHGHVIR 176
+ F F+ F+ + + +P L+ + VL D+ L+ H +I
Sbjct: 11 LHFPKFRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLR---TVHSRIIL 67
Query: 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAV 236
DL + S+ L+ Y + AR+ FD EI + N MI Y NG Y V
Sbjct: 68 EDLRCNSSLGVKLMRAYASLKDVASARKVFD--EIPERNVIIINVMIRSYVNNGFYGEGV 125
Query: 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296
++F M V+P+ +F VL AC +G + +I GL +V +
Sbjct: 126 KVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA-TKVGLSSTLFVGNGLVSM 184
Query: 297 LGRSGRLDEARELIRELPEPTVSVYHSLL 325
G+ G L EAR ++ E+ V ++SL+
Sbjct: 185 YGKCGFLSEARLVLDEMSRRDVVSWNSLV 213
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 264 bits (675), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 225/383 (58%), Gaps = 4/383 (1%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ VT SV+ + L GR +HG +K D + +A++DMY K G + ++
Sbjct: 250 PDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISL 309
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + + + N I G+ NG +KA+E+FE + + + +W S+I+G +Q G
Sbjct: 310 FNQFEMMEAGVC-NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGK 368
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA +LF +MQ G+ P+ + S+L AC +++AL G+ THG +R L + + +A
Sbjct: 369 DIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSA 428
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY KCG+ + ++ F+ K + WN++++G+ +G+ + + IF+ + + ++K
Sbjct: 429 LIDMYAKCGRINLSQIVFNMMPTK--NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLK 486
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ SF ++LSACG G D+ + F MM +++G+KP+ EH+ CMV+LLGR+G+L EA +
Sbjct: 487 PDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYD 546
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
LI+E+P EP V+ +LL +C N DL E A KL +EPENP +V+LSNIYA G
Sbjct: 547 LIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGM 606
Query: 368 WEDVGRIRQMINDRQLTKLPGIS 390
W +V IR + L K PG S
Sbjct: 607 WTEVDSIRNKMESLGLKKNPGCS 629
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 151/299 (50%), Gaps = 4/299 (1%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+S ++ CA L + G+Q+H ++ D + ++ MY++CG + A V
Sbjct: 114 PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKV 173
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + ++++T + ++ G E+ + + + G + + +WN ++SGF++ G
Sbjct: 174 FDRMS-DKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGY 232
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA +F+K+ G P V+SVL + D L +G+ HG+VI+ L KD+ + +A
Sbjct: 233 HKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISA 292
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
+I MY K G F+QFE+ + NA I+G RNG + A+E+F+L +++ ++
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMM--EAGVCNAYITGLSRNGLVDKALEMFELFKEQTME 350
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
N S+ ++++ C G +AL++F M G+KP M+ G L R
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVA-GVKPNHVTIPSMLPACGNIAALGHGR 408
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 125/248 (50%), Gaps = 12/248 (4%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+PN VT S++ AC ++ L GR HG +++ + +G+AL+DMY KCG + +
Sbjct: 385 KPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI 444
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF + ++N++ WN+++ G ++G++++ M +FE L KPD ++ S++S Q+G
Sbjct: 445 VFNMMP-TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG 503
Query: 128 MRFEAFKLFEKM-QSTGMVPSLK---CVTSVLSACADLSALKLGKETHGHVIRADLNKDE 183
+ E +K F+ M + G+ P L+ C+ ++L L +E + + D
Sbjct: 504 LTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL------QEAYDLIKEMPFEPDS 557
Query: 184 SMATALISMYMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242
+ AL++ A ++ F ++P++P + + + Y G + I + M
Sbjct: 558 CVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKM 617
Query: 243 QQEKVKPN 250
+ +K N
Sbjct: 618 ESLGLKKN 625
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 100/199 (50%), Gaps = 5/199 (2%)
Query: 111 PDPA--TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168
PDP +++S+I ++ + ++ +F +M S G++P + ++ CA+LSA K+GK
Sbjct: 77 PDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGK 136
Query: 169 ETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGR 228
+ H + L+ D + ++ MYM+CG+ AR+ FD+ K D +A++ Y R
Sbjct: 137 QIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDK--DVVTCSALLCAYAR 194
Query: 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE 288
G E V I M+ ++ N S+ +LS +G+ +A+ +F + G P Q
Sbjct: 195 KGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI-HHLGFCPDQV 253
Query: 289 HFGCMVDLLGRSGRLDEAR 307
++ +G S L+ R
Sbjct: 254 TVSSVLPSVGDSEMLNMGR 272
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 218/382 (57%), Gaps = 9/382 (2%)
Query: 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQE 71
VT + V+SACA + L+FGRQV + + + A++DMY KCG + A +F
Sbjct: 233 VTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDA 292
Query: 72 LKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFE 131
++ N+ TW TM+ G ++ E A E+ + + D WN++IS + Q G E
Sbjct: 293 MEEKDNV-TWTTMLDGYAISEDYEAAREVLNSMPQK----DIVAWNALISAYEQNGKPNE 347
Query: 132 AFKLFEKMQ-STGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALI 190
A +F ++Q M + + S LSACA + AL+LG+ H ++ + + + + +ALI
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALI 407
Query: 191 SMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN 250
MY KCG +R F+ E + D W+AMI G +G AV++F MQ+ VKPN
Sbjct: 408 HMYSKCGDLEKSREVFNSVEKR--DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPN 465
Query: 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310
+F V AC H G VD+A +F M+ ++G+ P+++H+ C+VD+LGRSG L++A + I
Sbjct: 466 GVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFI 525
Query: 311 RELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369
+P P+ SV+ +LLGAC H N +L E +L E+EP N V+LSNIYA LG+WE
Sbjct: 526 EAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWE 585
Query: 370 DVGRIRQMINDRQLTKLPGISA 391
+V +R+ + L K PG S+
Sbjct: 586 NVSELRKHMRVTGLKKEPGCSS 607
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 165/368 (44%), Gaps = 67/368 (18%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PN TF +I A A + L G+ +HG+ +K SD + +L+ Y CG L A V
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F +K +++++WN+MI G + G +KA+ELF
Sbjct: 189 FTTIK-EKDVVSWNSMINGFVQKGSPDKALELF--------------------------- 220
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
+KM+S + S + VLSACA + L+ G++ ++ +N + ++A A
Sbjct: 221 --------KKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANA 272
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPD-----------------------------DPAFW 219
++ MY KCG A+R FD E K + D W
Sbjct: 273 MLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAW 332
Query: 220 NAMISGYGRNGEYESAVEIFDLMQ-QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278
NA+IS Y +NG+ A+ +F +Q Q+ +K N + V+ LSAC G ++ I + +
Sbjct: 333 NALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK 392
Query: 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGE 338
G++ ++ + + G L+++RE+ + + V V+ +++G H +
Sbjct: 393 KH-GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAV 451
Query: 339 EMAMKLQE 346
+M K+QE
Sbjct: 452 DMFYKMQE 459
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 53/272 (19%)
Query: 153 SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS--WARRFFDQFE 210
S++ C L LK +THGH+IR D A+ L +M S +AR+ FD+
Sbjct: 35 SLIERCVSLRQLK---QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIP 91
Query: 211 IKPDDPAFWNAMISGYGRNGEYESAVEIF-DLMQQEKVKPNSASF--------------- 254
KP+ A WN +I Y + ++ F D++ + + PN +F
Sbjct: 92 -KPNSFA-WNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149
Query: 255 ------VAVLSACG--------------HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294
+AV SA G G +D A ++FT + + + + M+
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS-----WNSMI 204
Query: 295 DLLGRSGRLDEARELIRELPEPTVSVYH----SLLGACWCHLNSDLGEEMAMKLQEMEPE 350
+ + G D+A EL +++ V H +L AC N + G ++ ++E
Sbjct: 205 NGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVN 264
Query: 351 -NPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381
N T + ++Y G ED R+ + ++
Sbjct: 265 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 296
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 218/397 (54%), Gaps = 14/397 (3%)
Query: 1 MKECLSDE---PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYL 57
M C+ E P S TF +++ AC ++ L GRQ H T ++ +G ++DMY+
Sbjct: 136 MYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYV 195
Query: 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWN 117
KC + CA VF E+ R++++W +IA G E A ELFE L + D W
Sbjct: 196 KCESIDCARKVFDEMP-ERDVISWTELIAAYARVGNMECAAELFESLPTK----DMVAWT 250
Query: 118 SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177
+M++GF+Q EA + F++M+ +G+ V +SACA L A K ++
Sbjct: 251 AMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKS 310
Query: 178 DLNKDES--MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESA 235
+ + + +ALI MY KCG A F + + +++MI G +G + A
Sbjct: 311 GYSPSDHVVIGSALIDMYSKCGNVEEAVNVF--MSMNNKNVFTYSSMILGLATHGRAQEA 368
Query: 236 VEIFDLM-QQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294
+ +F M Q ++KPN+ +FV L AC H+G VD+ Q+F M FG++P ++H+ CMV
Sbjct: 369 LHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMV 428
Query: 295 DLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353
DLLGR+GRL EA ELI+ + EP V+ +LLGAC H N ++ E A L E+EP+
Sbjct: 429 DLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIG 488
Query: 354 PFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
+++LSN+YA G W V R+R++I ++ L K P +S
Sbjct: 489 NYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVS 525
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 27/190 (14%)
Query: 151 VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP--SWARRFFDQ 208
V+S++S D L K+ HGHV+R L++ + T LI K G P +ARR +
Sbjct: 49 VSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEP 108
Query: 209 FEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVD 268
+ + +P W A+I GY G+++ A+ ++ M++E++ P S +F A+L ACG
Sbjct: 109 VQFR--NPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACG------ 160
Query: 269 KALQIFTMMDDDFGLKPKQEHF-----------GCMVDLLGRSGRLDEARELIRELPEPT 317
TM D + G + + F M+D+ + +D AR++ E+PE
Sbjct: 161 ------TMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERD 214
Query: 318 VSVYHSLLGA 327
V + L+ A
Sbjct: 215 VISWTELIAA 224
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 107/255 (41%), Gaps = 40/255 (15%)
Query: 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETH 171
+P W ++I G++ G EA ++ M+ + P +++L AC + L LG++ H
Sbjct: 113 NPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFH 172
Query: 172 GHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQ----------------------- 208
R + +I MY+KC AR+ FD+
Sbjct: 173 AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNME 232
Query: 209 -----FEIKP-DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACG 262
FE P D W AM++G+ +N + + A+E FD M++ ++ + + +SAC
Sbjct: 233 CAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACA 292
Query: 263 HAG---HVDKALQIFTMMDDDFGLKPKQEHF---GCMVDLLGRSGRLDEARELIRELPEP 316
G + D+A+QI G P +H ++D+ + G ++EA + +
Sbjct: 293 QLGASKYADRAVQI----AQKSGYSP-SDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNK 347
Query: 317 TVSVYHSLLGACWCH 331
V Y S++ H
Sbjct: 348 NVFTYSSMILGLATH 362
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 219/383 (57%), Gaps = 8/383 (2%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P SVT + V+SAC+ + ++VH + + + + ALV+ Y CG + A +
Sbjct: 234 PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRI 293
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F+ +K +R++++W +++ G + G + A F+ + D +W MI G+ + G
Sbjct: 294 FRSMK-ARDVISWTSIVKGYVERGNLKLARTYFDQMPVR----DRISWTIMIDGYLRAGC 348
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
E+ ++F +MQS GM+P + SVL+ACA L +L++G+ ++ + + D + A
Sbjct: 349 FNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA 408
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY KCG A++ F + + D W AM+ G NG+ + A+++F MQ ++
Sbjct: 409 LIDMYFKCGCSEKAQKVFHDMDQR--DKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ +++ VLSAC H+G VD+A + F M D ++P H+GCMVD+LGR+G + EA E
Sbjct: 467 PDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYE 526
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
++R++P P V+ +LLGA H + + E A K+ E+EP+N + +L NIYAG R
Sbjct: 527 ILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKR 586
Query: 368 WEDVGRIRQMINDRQLTKLPGIS 390
W+D+ +R+ I D + K PG S
Sbjct: 587 WKDLREVRRKIVDVAIKKTPGFS 609
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 161/338 (47%), Gaps = 16/338 (4%)
Query: 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIA 86
L G+++H +K S+ + ALV MY CG + A VF + ++ +WN MI+
Sbjct: 151 LACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDR-RCKEDVFSWNLMIS 209
Query: 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146
G E+++EL + P T ++S S++ + ++ E + P
Sbjct: 210 GYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269
Query: 147 SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFF 206
SL+ ++++A A + + + R+ +D T+++ Y++ G AR +F
Sbjct: 270 SLRLENALVNAYAACGEMDIAV----RIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325
Query: 207 DQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH 266
DQ ++ D W MI GY R G + ++EIF MQ + P+ + V+VL+AC H G
Sbjct: 326 DQMPVR--DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGS 383
Query: 267 VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLG 326
++ I T +D + +K ++D+ + G ++A+++ ++ + + +++
Sbjct: 384 LEIGEWIKTYIDKN-KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVV 442
Query: 327 ACWCHLNSDLGEE---MAMKLQEM--EPENPTPFVILS 359
N+ G+E + ++Q+M +P++ T +LS
Sbjct: 443 GL---ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLS 477
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 8/237 (3%)
Query: 90 LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149
L G A +LF + +PD WN+MI G+S++ E +L+ M G+ P
Sbjct: 80 LGGHVSYAYKLFVKIP----EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSH 135
Query: 150 CVTSVLSACA-DLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQ 208
+L+ D AL GK+ H HV++ L + + AL+ MY CG AR FD+
Sbjct: 136 TFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDR 195
Query: 209 FEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVD 268
+D WN MISGY R EYE ++E+ M++ V P S + + VLSAC D
Sbjct: 196 R--CKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKD 253
Query: 269 KALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325
++ + + +P +V+ G +D A + R + V + S++
Sbjct: 254 LCKRVHEYV-SECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIV 309
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/450 (33%), Positives = 235/450 (52%), Gaps = 70/450 (15%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+P+ +T +SV+ A ++L + G+++HG ++ S I TALVDMY KCG L A
Sbjct: 233 KPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQ 292
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKP---------------- 111
+F + RN+++WN+MI + N ++AM +F+ + EG KP
Sbjct: 293 LFDGML-ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLG 351
Query: 112 -------------------DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMV------- 145
+ + NS+IS + + A +F K+QS +V
Sbjct: 352 DLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMIL 411
Query: 146 ------------------------PSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK 181
P SV++A A+LS K HG V+R+ L+K
Sbjct: 412 GFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDK 471
Query: 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241
+ + TAL+ MY KCG AR FD + WNAMI GYG +G ++A+E+F+
Sbjct: 472 NVFVTTALVDMYAKCGAIMIARLIFDM--MSERHVTTWNAMIDGYGTHGFGKAALELFEE 529
Query: 242 MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301
MQ+ +KPN +F++V+SAC H+G V+ L+ F MM +++ ++ +H+G MVDLLGR+G
Sbjct: 530 MQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAG 589
Query: 302 RLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
RL+EA + I ++P +P V+VY ++LGAC H N + E+ A +L E+ P++ V+L+N
Sbjct: 590 RLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLAN 649
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IY WE VG++R + + L K PG S
Sbjct: 650 IYRAASMWEKVGQVRVSMLRQGLRKTPGCS 679
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 39/318 (12%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
EP F ++ C L+ G+++HGL +K D T L +MY KC + A
Sbjct: 132 EPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARK 191
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF + + D +WN++++G+SQ G
Sbjct: 192 VFDRMP------------------------------------ERDLVSWNTIVAGYSQNG 215
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
M A ++ + M + PS + SVL A + L + +GKE HG+ +R+ + +++T
Sbjct: 216 MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIST 275
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
AL+ MY KCG AR+ FD + + WN+MI Y +N + A+ IF M E V
Sbjct: 276 ALVDMYAKCGSLETARQLFDG--MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV 333
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
KP S + L AC G +++ + + + GL ++ + + +D A
Sbjct: 334 KPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAA 392
Query: 308 ELIRELPEPTVSVYHSLL 325
+ +L T+ +++++
Sbjct: 393 SMFGKLQSRTLVSWNAMI 410
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 158/351 (45%), Gaps = 51/351 (14%)
Query: 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR 76
++ C+SL L RQ+ L K + T LV ++ + G + A VF+ +
Sbjct: 43 LLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99
Query: 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF 136
N+L +++M+ GF+++ +A + F
Sbjct: 100 NVL------------------------------------YHTMLKGFAKVSDLDKALQFF 123
Query: 137 EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196
+M+ + P + T +L C D + L++GKE HG ++++ + D T L +MY KC
Sbjct: 124 VRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC 183
Query: 197 GQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256
Q + AR+ FD+ + D WN +++GY +NG A+E+ M +E +KP+ + V+
Sbjct: 184 RQVNEARKVFDR--MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVS 241
Query: 257 VLSACG--HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314
VL A V K + + M G +VD+ + G L+ AR+L +
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRS---GFDSLVNISTALVDMYAKCGSLETARQLFDGML 298
Query: 315 EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--NPTPFVILSNIYA 363
E V ++S++ A ++ ++ +E + Q+M E PT ++ ++A
Sbjct: 299 ERNVVSWNSMIDA---YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 213/362 (58%), Gaps = 8/362 (2%)
Query: 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNI 78
S CA L L +VHG +K + AL+ +Y K G + A ++F++++ ++ I
Sbjct: 302 SVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIR-NKGI 360
Query: 79 LTWNTMIAGMMLNGRSEKAMELF---EGLAHE-GFKPDPATWNSMISGFSQLGMRFEAFK 134
+WN++I + G+ ++A+ LF E + H K + TW S+I G + G ++ +
Sbjct: 361 ESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLE 420
Query: 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194
F +MQ + ++ + + +LS CA+L AL LG+E HGHVIR ++++ + AL++MY
Sbjct: 421 YFRQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYA 480
Query: 195 KCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254
KCG S F+ I+ D WN++I GYG +G E A+ +FD M P+ +
Sbjct: 481 KCGLLSEGSLVFEA--IRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIAL 538
Query: 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314
VAVLSAC HAG V+K +IF M FGL+P+QEH+ C+VDLLGR G L EA E+++ +P
Sbjct: 539 VAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMP 598
Query: 315 -EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373
EP V V +LL +C H N D+ E +A +L +EPE +++LSNIY+ GRWE+
Sbjct: 599 MEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESAN 658
Query: 374 IR 375
+R
Sbjct: 659 VR 660
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 131/265 (49%), Gaps = 7/265 (2%)
Query: 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR 76
++ AC L R H ++I + + + L+ +Y K G + A+N+F E+ R
Sbjct: 164 ILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMP-VR 222
Query: 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF 136
N ++WN MI G E A+++FE + E FKPD TW S++S SQ G + K F
Sbjct: 223 NRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYF 282
Query: 137 EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196
M+ +G S + + S CA+L AL + ++ HG+VI+ + ALI +Y K
Sbjct: 283 HLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQ 342
Query: 197 GQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE----KVKPNSA 252
G+ A F Q K + WN++I+ + G+ + A+ +F +++ VK N
Sbjct: 343 GKVKDAEHLFRQIRNKGIES--WNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVV 400
Query: 253 SFVAVLSACGHAGHVDKALQIFTMM 277
++ +V+ C G D +L+ F M
Sbjct: 401 TWTSVIKGCNVQGRGDDSLEYFRQM 425
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
NSVT ++S CA L L GR++HG ++ + ++ ALV+MY KCG L VF
Sbjct: 433 NSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVF 492
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
+ ++ +++++WN++I G ++G +EKA+ +F+ + GF PD +++S S G+
Sbjct: 493 EAIR-DKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLV 551
Query: 130 FEAFKLFEKM-QSTGMVPSLKCVTSVLSACADLSALKLGKE 169
+ ++F M + G+ P + ++ + LK E
Sbjct: 552 EKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASE 592
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 111/254 (43%), Gaps = 48/254 (18%)
Query: 31 RQVHGLTLKIEKQSDTM-----IGTALVDMYLKCGCLPCAHNVFQ--ELKGSRNILTWNT 83
RQVH L SD + + L+ +Y + G L A NVF+ L ++ WN+
Sbjct: 73 RQVHAQVL----LSDFIFRSGSLAANLISVYARLGLLLDARNVFETVSLVLLSDLRLWNS 128
Query: 84 MIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG 143
++ + +G E A+EL+ G+ G D G
Sbjct: 129 ILKANVSHGLYENALELYRGMRQRGLTGD------------------------------G 158
Query: 144 MVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWAR 203
+ L +L AC L L + H VI+ L ++ + L+++Y K G+ A
Sbjct: 159 YILPL-----ILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAY 213
Query: 204 RFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263
F + ++ + WN MI G+ + + ESAV+IF+ MQ+E+ KP+ ++ +VLS
Sbjct: 214 NLFVEMPVR--NRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQ 271
Query: 264 AGHVDKALQIFTMM 277
G + L+ F +M
Sbjct: 272 CGKFEDVLKYFHLM 285
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 216/383 (56%), Gaps = 12/383 (3%)
Query: 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQEL 72
T +S +SAC++L L+ G +++ + E + IG ALVDM+ KCGCL A VF +
Sbjct: 150 TIVSTLSACSALKNLEIGERIYRFVVT-EFEMSVRIGNALVDMFCKCGCLDKARAVFDSM 208
Query: 73 KGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEA 132
+ +N+ W +M+ G + GR ++A LFE D W +M++G+ Q EA
Sbjct: 209 R-DKNVKCWTSMVFGYVSTGRIDEARVLFE----RSPVKDVVLWTAMMNGYVQFNRFDEA 263
Query: 133 FKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISM 192
+LF MQ+ G+ P + S+L+ CA AL+ GK HG++ + D+ + TAL+ M
Sbjct: 264 LELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDM 323
Query: 193 YMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252
Y KCG A F +EIK D A W ++I G NG A++++ M+ V+ ++
Sbjct: 324 YAKCGCIETALEVF--YEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAI 381
Query: 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRE 312
+FVAVL+AC H G V + +IF M + ++PK EH C++DLL R+G LDEA ELI +
Sbjct: 382 TFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDK 441
Query: 313 L----PEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368
+ E V VY SLL A + N + E +A KL+++E + + +L+++YA RW
Sbjct: 442 MRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRW 501
Query: 369 EDVGRIRQMINDRQLTKLPGISA 391
EDV +R+ + D + K PG S+
Sbjct: 502 EDVTNVRRKMKDLGIRKFPGCSS 524
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 150/347 (43%), Gaps = 68/347 (19%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P++ T V+ + L + G +VHG +K + D+ + +L+ MY G + H V
Sbjct: 44 PDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKV 103
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKPDPATWNSMISGFSQLG 127
F E+ R++++WN +I+ + NGR E A+ +F+ ++ E K D T
Sbjct: 104 FDEMP-QRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGT------------ 150
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
+ S LSAC+ L L++G+ + V+ + +
Sbjct: 151 -----------------------IVSTLSACSALKNLEIGERIYRFVV-TEFEMSVRIGN 186
Query: 188 ALISMYMKCGQPSWARRFFDQ----------------------------FEIKP-DDPAF 218
AL+ M+ KCG AR FD FE P D
Sbjct: 187 ALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVL 246
Query: 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278
W AM++GY + ++ A+E+F MQ ++P++ V++L+ C G +++ I ++
Sbjct: 247 WTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIN 306
Query: 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325
++ + + +VD+ + G ++ A E+ E+ E + + SL+
Sbjct: 307 EN-RVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLI 352
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P++ +S+++ CA L+ G+ +HG + D ++GTALVDMY KCGC+ A V
Sbjct: 277 PDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEV 336
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F E+K R+ +W ++I G+ +NG S +A++L+ + + G + D T+ ++++ + G
Sbjct: 337 FYEIK-ERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGF 395
Query: 129 RFEAFKLFEKM 139
E K+F M
Sbjct: 396 VAEGRKIFHSM 406
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 105/216 (48%), Gaps = 5/216 (2%)
Query: 111 PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKET 170
P +N M+ + + LF +++ G+ P + VL + L + G++
Sbjct: 9 PSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKV 68
Query: 171 HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNG 230
HG+ ++A L D ++ +L+ MY G+ + FD E+ D WN +IS Y NG
Sbjct: 69 HGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFD--EMPQRDVVSWNGLISSYVGNG 126
Query: 231 EYESAVEIFDLMQQE-KVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH 289
+E A+ +F M QE +K + + V+ LSAC +++ +I+ + +F + + +
Sbjct: 127 RFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGN 186
Query: 290 FGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325
+VD+ + G LD+AR + + + V + S++
Sbjct: 187 --ALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMV 220
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/342 (38%), Positives = 205/342 (59%), Gaps = 7/342 (2%)
Query: 50 TALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF 109
A++ Y++CG L A + F+ + R ++ W MI G M + E A +F+ +
Sbjct: 190 NAMISGYIECGDLEKASHFFK-VAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT---V 245
Query: 110 KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKE 169
+ TWN+MISG+ + + KLF M G+ P+ ++S L C++LSAL+LG++
Sbjct: 246 NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ 305
Query: 170 THGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229
H V ++ L D + T+LISMY KCG+ A + F+ +K D WNAMISGY ++
Sbjct: 306 IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEV--MKKKDVVAWNAMISGYAQH 363
Query: 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH 289
G + A+ +F M K++P+ +FVAVL AC HAG V+ + F M D+ ++P+ +H
Sbjct: 364 GNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDH 423
Query: 290 FGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME 348
+ CMVDLLGR+G+L+EA +LIR +P P +V+ +LLGAC H N +L E A KL ++
Sbjct: 424 YTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLN 483
Query: 349 PENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
+N +V L+NIYA RWEDV R+R+ + + + K+PG S
Sbjct: 484 SQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYS 525
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 46/293 (15%)
Query: 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFE 102
+ DT ++ Y++ A + F + ++ +WNTMI G G EKA ELF
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP-FKDAASWNTMITGYARRGEMEKARELFY 179
Query: 103 GLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162
+ + + +WN+MISG+ + C DL
Sbjct: 180 SM----MEKNEVSWNAMISGYIE--------------------------------CGDL- 202
Query: 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM 222
E H + + TA+I+ YMK + A F + + WNAM
Sbjct: 203 ------EKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVN-KNLVTWNAM 255
Query: 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFG 282
ISGY N E +++F M +E ++PNS+ + L C + QI ++
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKS-T 314
Query: 283 LKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSD 335
L ++ + + G L +A +L + + V +++++ H N+D
Sbjct: 315 LCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNAD 367
Score = 38.5 bits (88), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 202 ARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC 261
A + FD EI D +N M+S Y RN +E A FD M + ++AS+ +++
Sbjct: 112 AHQLFD--EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTMITGY 165
Query: 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVY 321
G ++KA ++F M ++ + + M+ G L++A + P V +
Sbjct: 166 ARRGEMEKARELFYSM-----MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAW 220
Query: 322 HSLLGACWCHLNSDLGEEM 340
+++ +L E M
Sbjct: 221 TAMITGYMKAKKVELAEAM 239
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/389 (34%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 4 CLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLP 63
C S N+ TF S++ AC++L + Q+H K+ ++D +L++ Y G
Sbjct: 108 CSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFK 167
Query: 64 CAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123
AH +F + ++ +WN++I G + G+ + A+ LF +A + + +W +MISG+
Sbjct: 168 LAHLLFDRIPEPDDV-SWNSVIKGYVKAGKMDIALTLFRKMAEK----NAISWTTMISGY 222
Query: 124 SQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDE 183
Q M EA +LF +MQ++ + P + + LSACA L AL+ GK H ++ + + D
Sbjct: 223 VQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDS 282
Query: 184 SMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243
+ LI MY KCG+ A F IK W A+ISGY +G A+ F MQ
Sbjct: 283 VLGCVLIDMYAKCGEMEEALEVFKN--IKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRL 303
+ +KPN +F AVL+AC + G V++ IF M+ D+ LKP EH+GC+VDLLGR+G L
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLL 400
Query: 304 DEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362
DEA+ I+E+P +P ++ +LL AC H N +LGEE+ L ++P + +V +NI+
Sbjct: 401 DEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIH 460
Query: 363 AGLGRWEDVGRIRQMINDRQLTKLPGISA 391
A +W+ R+++ ++ + K+PG S
Sbjct: 461 AMDKKWDKAAETRRLMKEQGVAKVPGCST 489
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 125/290 (43%), Gaps = 40/290 (13%)
Query: 101 FEGLAHEGF-KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159
+ + +GF +PD WN MI GFS + L+++M + + S+L AC+
Sbjct: 67 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 160 DLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF- 218
+LSA + + H + + D +LI+ Y G A FD+ +PDD ++
Sbjct: 127 NLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDVSWN 185
Query: 219 -----------------------------WNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
W MISGY + + A+++F MQ V+P
Sbjct: 186 SVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEP 245
Query: 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH-FGC-MVDLLGRSGRLDEAR 307
++ S LSAC G +++ I + ++ + + + GC ++D+ + G ++EA
Sbjct: 246 DNVSLANALSACAQLGALEQGKWIHSYLNKT---RIRMDSVLGCVLIDMYAKCGEMEEAL 302
Query: 308 ELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357
E+ + + + +V + +L+ H + G E K EM+ P VI
Sbjct: 303 EVFKNIKKKSVQAWTALISGYAYHGH---GREAISKFMEMQKMGIKPNVI 349
>sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2
SV=2
Length = 520
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 217/363 (59%), Gaps = 10/363 (2%)
Query: 31 RQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMML 90
R VH +K + + D ++ TALVD Y+K G L A VF+ +K N++ +MI+G M
Sbjct: 160 RLVHARIIKCDVELDDVLITALVDTYVKSGKLESARTVFETMK-DENVVCCTSMISGYMN 218
Query: 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFE-AFKLFEKMQSTGMVPSLK 149
G E A E+F + D +N+M+ GFS+ G + + ++ MQ G P++
Sbjct: 219 QGFVEDAEEIFNTTKVK----DIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNIS 274
Query: 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQF 209
SV+ AC+ L++ ++G++ H ++++ + M ++L+ MY KCG + ARR FDQ
Sbjct: 275 TFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQM 334
Query: 210 EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDK 269
+ K + W +MI GYG+NG E A+E+F M++ +++PN +F+ LSAC H+G VDK
Sbjct: 335 QEK--NVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDK 392
Query: 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-PTVSVYHSLLGAC 328
+IF M D+ +KPK EH+ C+VDL+GR+G L++A E R +PE P ++ +LL +C
Sbjct: 393 GYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSC 452
Query: 329 WCHLNSDLGEEMAMKLQEMEPEN-PTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLP 387
H N +L A +L ++ + P ++ LSN+YA +W++V +IR+++ R+++K
Sbjct: 453 NLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTI 512
Query: 388 GIS 390
G S
Sbjct: 513 GRS 515
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 151/351 (43%), Gaps = 62/351 (17%)
Query: 30 GRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMM 89
G+++H +K Q D I L+ ++LKCGCL A VF EL + +N MI+G +
Sbjct: 53 GKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKP-TLSAYNYMISGYL 111
Query: 90 LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149
+G ++ + L + +++ G K D T + ++ + G ST ++P
Sbjct: 112 KHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRG-------------STMILPRSL 158
Query: 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQF 209
C + H +I+ D+ D+ + TAL+ Y+K G+ AR F+
Sbjct: 159 C-----------------RLVHARIIKCDVELDDVLITALVDTYVKSGKLESARTVFETM 201
Query: 210 E-----------------------------IKPDDPAFWNAMISGYGRNGEY-ESAVEIF 239
+ K D +NAM+ G+ R+GE + +V+++
Sbjct: 202 KDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMY 261
Query: 240 DLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR 299
MQ+ PN ++F +V+ AC + Q+ + G+ + ++D+ +
Sbjct: 262 ISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKS-GVYTHIKMGSSLLDMYAK 320
Query: 300 SGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350
G +++AR + ++ E V + S++ + N + E+ +++E E
Sbjct: 321 CGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIE 371
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 15/246 (6%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PN TF SVI AC+ L + G+QVH +K + +G++L+DMY KCG + A V
Sbjct: 271 PNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRV 330
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F +++ +N+ +W +MI G NG E+A+ELF + +P+ T+ +S S G+
Sbjct: 331 FDQMQ-EKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGL 389
Query: 129 RFEAFKLFEKMQ-STGMVPSLK---CVTSVLSACADLS-ALKLGKETHGHVIRADLNKDE 183
+ +++FE MQ M P ++ C+ ++ DL+ A + + D
Sbjct: 390 VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPER-------PDS 442
Query: 184 SMATALISMYMKCGQPSWARRFFDQ-FEIKPDD-PAFWNAMISGYGRNGEYESAVEIFDL 241
+ AL+S G A + F++ D P + A+ + Y N ++++ +I ++
Sbjct: 443 DIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREV 502
Query: 242 MQQEKV 247
M++ ++
Sbjct: 503 MKRRRI 508
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 22/198 (11%)
Query: 133 FKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISM 192
+ F Q+ + K + L + A K GK+ H +I+ D +++ L+ +
Sbjct: 19 YSTFPLKQNVSSLSPAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPDLNISIKLLIL 78
Query: 193 YMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252
++KCG S+AR+ FD+ KP A+ N MISGY ++G + + + M K +
Sbjct: 79 HLKCGCLSYARQVFDELP-KPTLSAY-NYMISGYLKHGLVKELLLLVQRMSYSGEKADGY 136
Query: 253 SFVAVLSACGHAGHV------------DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
+ VL A G + ++ +DD +VD +S
Sbjct: 137 TLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVL--------ITALVDTYVKS 188
Query: 301 GRLDEARELIRELPEPTV 318
G+L+ AR + + + V
Sbjct: 189 GKLESARTVFETMKDENV 206
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 218/408 (53%), Gaps = 36/408 (8%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+S +F VI A + L+ G Q+H LK +S +GT L+ MY CGC+ A V
Sbjct: 104 PDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKV 163
Query: 69 FQELK---------------------GSRNIL---------TWNTMIAGMMLNGRSEKAM 98
F E+ G+R I +WN M+AG + G E A
Sbjct: 164 FDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAK 223
Query: 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158
+F + H D +W++MI G + G E+F F ++Q GM P+ +T VLSAC
Sbjct: 224 RIFSEMPHR----DDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSAC 279
Query: 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF 218
+ + + GK HG V +A + S+ ALI MY +CG AR F+ + K +
Sbjct: 280 SQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVS- 338
Query: 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278
W +MI+G +G+ E AV +F+ M V P+ SF+++L AC HAG +++ F+ M
Sbjct: 339 WTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMK 398
Query: 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLG 337
+ ++P+ EH+GCMVDL GRSG+L +A + I ++P PT V+ +LLGAC H N +L
Sbjct: 399 RVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELA 458
Query: 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTK 385
E++ +L E++P N V+LSN YA G+W+DV IR+ + +++ K
Sbjct: 459 EQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKK 506
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 135/321 (42%), Gaps = 57/321 (17%)
Query: 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG 74
+S++++C +L L Q+HGL +K +D+ L+ L CA ++ L
Sbjct: 9 LSLLNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLI--------LHCAISISDALPY 57
Query: 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFK 134
+R +L +PD +N+++ G+S+ +
Sbjct: 58 ARRLLLCFP--------------------------EPDAFMFNTLVRGYSESDEPHNSVA 91
Query: 135 LFEKMQSTGMV-PSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY 193
+F +M G V P V+ A + +L+ G + H ++ L + T LI MY
Sbjct: 92 VFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMY 151
Query: 194 MKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253
CG +AR+ FD+ +P+ A WNA+I+ R + A EIFD M + N S
Sbjct: 152 GGCGCVEFARKVFDEMH-QPNLVA-WNAVITACFRGNDVAGAREIFDKM----LVRNHTS 205
Query: 254 FVAVLSACGHAGHVDKALQIFTMM--DDDFGLKPKQEHFGCMVDLLGRSGRLDEA----R 307
+ +L+ AG ++ A +IF+ M DD + M+ + +G +E+ R
Sbjct: 206 WNVMLAGYIKAGELESAKRIFSEMPHRDDVS-------WSTMIVGIAHNGSFNESFLYFR 258
Query: 308 ELIRELPEPTVSVYHSLLGAC 328
EL R P +L AC
Sbjct: 259 ELQRAGMSPNEVSLTGVLSAC 279
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 223/389 (57%), Gaps = 12/389 (3%)
Query: 8 EPNSVTFISVISACASLLYLQ--FGRQVHGLTLKIE-KQSDTMIGTALVDMYLKCGCLPC 64
EPN +TFI+++S C G +HG K+ ++ M+GTA++ MY K G
Sbjct: 68 EPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKK 127
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
A VF ++ +N +TWNTMI G M +G+ + A ++F+ + D +W +MI+GF
Sbjct: 128 ARLVFDYME-DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPER----DLISWTAMINGFV 182
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
+ G + EA F +MQ +G+ P + + L+AC +L AL G H +V+ D +
Sbjct: 183 KKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVR 242
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
++ +LI +Y +CG +AR+ F + ++ WN++I G+ NG ++ F MQ+
Sbjct: 243 VSNSLIDLYCRCGCVEFARQVF--YNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300
Query: 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLD 304
+ KP++ +F L+AC H G V++ L+ F +M D+ + P+ EH+GC+VDL R+GRL+
Sbjct: 301 KGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLE 360
Query: 305 EARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMK-LQEMEPENPTPFVILSNIY 362
+A +L++ +P +P V SLL AC H N+ + E MK L ++ ++ + +VILSN+Y
Sbjct: 361 DALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMY 420
Query: 363 AGLGRWEDVGRIRQMINDRQLTKLPGISA 391
A G+WE ++R+ + L K PG S+
Sbjct: 421 AADGKWEGASKMRRKMKGLGLKKQPGFSS 449
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 74/286 (25%)
Query: 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFK 134
S ++W + I + NGR +A + F + G +P+ T+ +++SG
Sbjct: 33 SETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSG------------ 80
Query: 135 LFEKMQSTGMVPSLKCVTSVLSACADLS--ALKLGKETHGHVIRADLNKDESM-ATALIS 191
C D + + LG HG+ + L+++ M TA+I
Sbjct: 81 -----------------------CGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIG 117
Query: 192 MYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDL---------- 241
MY K G+ AR FD E K + WN MI GY R+G+ ++A ++FD
Sbjct: 118 MYSKRGRFKKARLVFDYMEDK--NSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWT 175
Query: 242 ---------------------MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT-MMDD 279
MQ VKP+ + +A L+AC + G + L + ++
Sbjct: 176 AMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQ 235
Query: 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325
DF K ++DL R G ++ AR++ + + TV ++S++
Sbjct: 236 DF--KNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVI 279
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 207/387 (53%), Gaps = 42/387 (10%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+PN VT SV+S C + L+ GR VHGL++K+ DT + ALV MY KC
Sbjct: 340 KPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIW-DTNVANALVHMYAKC-------- 390
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
+ A + SEK D WNS+ISGFSQ G
Sbjct: 391 -------------YQNRDAKYVFEMESEK---------------DIVAWNSIISGFSQNG 422
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESM-- 185
EA LF +M S + P+ V S+ SACA L +L +G H + ++ S+
Sbjct: 423 SIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHV 482
Query: 186 ATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245
TAL+ Y KCG P AR FD E K + W+AMI GYG+ G+ ++E+F+ M ++
Sbjct: 483 GTALLDFYAKCGDPQSARLIFDTIEEK--NTITWSAMIGGYGKQGDTIGSLELFEEMLKK 540
Query: 246 KVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305
+ KPN ++F ++LSACGH G V++ + F+ M D+ P +H+ CMVD+L R+G L++
Sbjct: 541 QQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQ 600
Query: 306 ARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364
A ++I ++P +P V + + L C H DLGE + K+ ++ P++ + +V++SN+YA
Sbjct: 601 ALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYAS 660
Query: 365 LGRWEDVGRIRQMINDRQLTKLPGISA 391
GRW +R ++ R L+K+ G S
Sbjct: 661 DGRWNQAKEVRNLMKQRGLSKIAGHST 687
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 157/358 (43%), Gaps = 52/358 (14%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
N T+ ++I AC L L G+ HG +K + + + T+L+DMY+KCG + A VF
Sbjct: 241 NEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVF 300
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
E D W +MI G++ G
Sbjct: 301 NEHS------------------------------------HVDLVMWTAMIVGYTHNGSV 324
Query: 130 FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL 189
EA LF+KM+ + P+ + SVLS C + L+LG+ HG I+ + D ++A AL
Sbjct: 325 NEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANAL 383
Query: 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
+ MY KC Q A+ F+ K D WN++ISG+ +NG A+ +F M E V P
Sbjct: 384 VHMYAKCYQNRDAKYVFEMESEK--DIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTP 441
Query: 250 NSASFVAVLSACGHAGH--VDKALQIFTMMDDDFG-LKPKQEHFG-CMVDLLGRSGRLDE 305
N + ++ SAC G V +L +++ G L H G ++D + G
Sbjct: 442 NGVTVASLFSACASLGSLAVGSSLHAYSV---KLGFLASSSVHVGTALLDFYAKCGDPQS 498
Query: 306 ARELIRELPEPTVSVYHSLLGACWCHLNS----DLGEEMAMKLQEMEPENPTPFVILS 359
AR + + E + +++G ++ +L EEM K Q +P T ILS
Sbjct: 499 ARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQ--KPNESTFTSILS 554
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 39/253 (15%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
+ + F + AC L L G+++H +K+ D ++ T L+DMY KCG + AH VF
Sbjct: 141 DDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVF 199
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
++ RN++ W SMI+G+ + +
Sbjct: 200 NDIT-LRNVVCWT-----------------------------------SMIAGYVKNDLC 223
Query: 130 FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL 189
E LF +M+ ++ + +++ AC LSAL GK HG ++++ + + T+L
Sbjct: 224 EEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSL 283
Query: 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
+ MY+KCG S ARR F+ E D W AMI GY NG A+ +F M+ ++KP
Sbjct: 284 LDMYVKCGDISNARRVFN--EHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKP 341
Query: 250 NSASFVAVLSACG 262
N + +VLS CG
Sbjct: 342 NCVTIASVLSGCG 354
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 150/360 (41%), Gaps = 55/360 (15%)
Query: 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR 76
++S C ++ L RQ HG+ D I T LV +Y G A VF ++
Sbjct: 50 LLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIP-EP 105
Query: 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF 136
+ W M+ LN S + ++L++ L GF+ D +
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVF-------------------- 145
Query: 137 EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196
+ L AC +L L GK+ H +++ + D + T L+ MY KC
Sbjct: 146 ---------------SKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKC 189
Query: 197 GQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256
G+ A + F+ ++ + W +MI+GY +N E + +F+ M++ V N ++
Sbjct: 190 GEIKSAHKVFNDITLR--NVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGT 247
Query: 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV----DLLGRSGRLDEARELIRE 312
++ AC + + + +K E C+V D+ + G + AR + E
Sbjct: 248 LIMACTKLSALHQGKWFHGCL-----VKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE 302
Query: 313 LPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP-FVILSNIYAGLGRWEDV 371
+ ++ +++ + H N + E +++ Q+M+ P V ++++ +G G E++
Sbjct: 303 HSHVDLVMWTAMIVG-YTH-NGSVNEALSL-FQKMKGVEIKPNCVTIASVLSGCGLIENL 359
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 218/382 (57%), Gaps = 7/382 (1%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
N +F +++AC LQ RQ HG L S+ ++ +++D Y KCG + A F
Sbjct: 178 NEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCF 237
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
E+ ++I W T+I+G G E A +LF + + +P +W ++I+G+ + G
Sbjct: 238 DEMT-VKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEK----NPVSWTALIAGYVRQGSG 292
Query: 130 FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL 189
A LF KM + G+ P +S L A A +++L+ GKE HG++IR ++ + + ++L
Sbjct: 293 NRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSL 352
Query: 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
I MY K G + R F + K D FWN MIS ++G A+ + D M + +V+P
Sbjct: 353 IDMYSKSGSLEASERVFRICDDK-HDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQP 411
Query: 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309
N + V +L+AC H+G V++ L+ F M G+ P QEH+ C++DLLGR+G E
Sbjct: 412 NRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRK 471
Query: 310 IRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368
I E+P EP +++++LG C H N +LG++ A +L +++PE+ P+++LS+IYA G+W
Sbjct: 472 IEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKW 531
Query: 369 EDVGRIRQMINDRQLTKLPGIS 390
E V ++R ++ R++ K +S
Sbjct: 532 ELVEKLRGVMKKRRVNKEKAVS 553
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 160/316 (50%), Gaps = 19/316 (6%)
Query: 16 SVISACASLLYLQFGRQVHGLTLKIE--KQSDTMIGTALVDMYLKCGCLPCAHNVFQELK 73
S++ C L+ G+ +H LKI K+ +T++ L+ MY+KCG A VF ++
Sbjct: 51 SLLQQCGDTKSLKQGKWIHR-HLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMH 109
Query: 74 GSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAF 133
RN+ +WN M++G + +G +A +F+ + D +WN+M+ G++Q G EA
Sbjct: 110 -LRNLYSWNNMVSGYVKSGMLVRARVVFDSMPER----DVVSWNTMVIGYAQDGNLHEAL 164
Query: 134 KLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY 193
+++ + +G+ + +L+AC L+L ++ HG V+ A + ++ ++I Y
Sbjct: 165 WFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAY 224
Query: 194 MKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253
KCGQ A+R FD+ +K D W +ISGY + G+ E+A ++F M ++ N S
Sbjct: 225 AKCGQMESAKRCFDEMTVK--DIHIWTTLISGYAKLGDMEAAEKLFCEMPEK----NPVS 278
Query: 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL---- 309
+ A+++ G ++AL +F M G+KP+Q F + L +E+
Sbjct: 279 WTALIAGYVRQGSGNRALDLFRKM-IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYM 337
Query: 310 IRELPEPTVSVYHSLL 325
IR P V SL+
Sbjct: 338 IRTNVRPNAIVISSLI 353
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 137/298 (45%), Gaps = 22/298 (7%)
Query: 5 LSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC 64
L +P TF S + A AS+ L+ G+++HG ++ + + ++ ++L+DMY K G L
Sbjct: 305 LGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEA 364
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
+ VF+ + + WNTMI+ + +G KA+ + + + +P+ T +++ S
Sbjct: 365 SERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACS 424
Query: 125 QLGMRFEAFKLFEKMQ-STGMVPS---LKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
G+ E + FE M G+VP C+ +L KE +
Sbjct: 425 HSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCF------KELMRKIEEMPFE 478
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIF 239
D+ + A++ + G ++ D+ ++ P+ A + + S Y +G++E ++
Sbjct: 479 PDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLR 538
Query: 240 DLMQQEKV-KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296
+M++ +V K + S++ ++K ++ FT+ D K+E + + +L
Sbjct: 539 GVMKKRRVNKEKAVSWI----------EIEKKVEAFTVSDGSHAHARKEEIYFILHNL 586
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 109/271 (40%), Gaps = 44/271 (16%)
Query: 131 EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES-MATAL 189
+A E + G+ + S+L C D +LK GK H H+ + + ++ L
Sbjct: 29 QAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHL 88
Query: 190 ISMYMKCGQPSWARRFFDQFEIK----------------------------PD-DPAFWN 220
I MYMKCG+P A + FDQ ++ P+ D WN
Sbjct: 89 IGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWN 148
Query: 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDD 280
M+ GY ++G A+ + ++ +K N SF +L+AC + + LQ+
Sbjct: 149 TMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKS----RQLQLNRQAHGQ 204
Query: 281 F---GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLG 337
G ++D + G+++ A+ E+ + ++ +L+ + LG
Sbjct: 205 VLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISG-----YAKLG 259
Query: 338 E-EMAMKL-QEMEPENPTPFVILSNIYAGLG 366
+ E A KL EM +NP + L Y G
Sbjct: 260 DMEAAEKLFCEMPEKNPVSWTALIAGYVRQG 290
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 224/405 (55%), Gaps = 23/405 (5%)
Query: 3 ECLSDE---PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC 59
E +SDE PN TF SV+ ACA +Q G+Q+HGL LK D + + LV MY+ C
Sbjct: 117 EMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMC 176
Query: 60 GCLPCAHNVF-------------QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAH 106
G + A +F K I+ WN MI G M G + A LF+ +
Sbjct: 177 GFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQ 236
Query: 107 EGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL 166
+WN+MISG+S G +A ++F +M+ + P+ + SVL A + L +L+L
Sbjct: 237 RSV----VSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLEL 292
Query: 167 GKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGY 226
G+ H + + + D+ + +ALI MY KCG A F++ + ++ W+AMI+G+
Sbjct: 293 GEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER--LPRENVITWSAMINGF 350
Query: 227 GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK 286
+G+ A++ F M+Q V+P+ +++ +L+AC H G V++ + F+ M GL+P+
Sbjct: 351 AIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPR 410
Query: 287 QEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQ 345
EH+GCMVDLLGRSG LDEA E I +P +P ++ +LLGAC N ++G+ +A L
Sbjct: 411 IEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILM 470
Query: 346 EMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
+M P + +V LSN+YA G W +V +R + ++ + K PG S
Sbjct: 471 DMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCS 515
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 115/277 (41%), Gaps = 51/277 (18%)
Query: 105 AHEGFKPDPA----TWNSMISGFSQLG--MRFEAFKLFEKMQSTGMV-PSLKCVTSVLSA 157
AH+ F P +WN++I GFS+ A LF +M S V P+ SVL A
Sbjct: 78 AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKA 137
Query: 158 CADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD--- 214
CA ++ GK+ HG ++ DE + + L+ MY+ CG AR F + I+ D
Sbjct: 138 CAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 197
Query: 215 ----------------------------------------DPAFWNAMISGYGRNGEYES 234
WN MISGY NG ++
Sbjct: 198 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKD 257
Query: 235 AVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294
AVE+F M++ ++PN + V+VL A G ++ + + +D G++ ++
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALI 316
Query: 295 DLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCH 331
D+ + G +++A + LP V + +++ H
Sbjct: 317 DMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIH 353
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 205/343 (59%), Gaps = 9/343 (2%)
Query: 50 TALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF 109
T+++ Y++ G + A +F E+ + ++ N MI+G+ G KA +F+ +
Sbjct: 238 TSMLMGYVQNGRIEDAEELF-EVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKER-- 294
Query: 110 KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKE 169
+ A+W ++I + G EA LF MQ G+ P+ + S+LS CA L++L GK+
Sbjct: 295 --NDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQ 352
Query: 170 THGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229
H ++R + D +A+ L++MY+KCG+ ++ FD+F K D WN++ISGY +
Sbjct: 353 VHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSK--DIIMWNSIISGYASH 410
Query: 230 GEYESAVEIF-DLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE 288
G E A+++F ++ KPN +FVA LSAC +AG V++ L+I+ M+ FG+KP
Sbjct: 411 GLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITA 470
Query: 289 HFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM 347
H+ CMVD+LGR+GR +EA E+I + EP +V+ SLLGAC H D+ E A KL E+
Sbjct: 471 HYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEI 530
Query: 348 EPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
EPEN +++LSN+YA GRW DV +R+++ R + K PG S
Sbjct: 531 EPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCS 573
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 15/247 (6%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P T IS++S CASL L G+QVH ++ + D + + L+ MY+KCG L + +
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLI 388
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEG-FKPDPATWNSMISGFSQLG 127
F S++I+ WN++I+G +G E+A+++F + G KP+ T+ + +S S G
Sbjct: 389 FDRFP-SKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK-----ETHGHVIRADLNKD 182
M E K++E M+S V +K +T+ + D+ LG+ E + + D
Sbjct: 448 MVEEGLKIYESMES---VFGVKPITAHYACMVDM----LGRAGRFNEAMEMIDSMTVEPD 500
Query: 183 ESMATALISMYMKCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241
++ +L+ Q A + EI+P++ + + + Y G + E+ L
Sbjct: 501 AAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKL 560
Query: 242 MQQEKVK 248
M+ V+
Sbjct: 561 MKTRLVR 567
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 36/302 (11%)
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
A +F E+ RNI++WN +++G M NG ++A ++F+ + +W +++ G+
Sbjct: 67 ARKLFDEMP-DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNV----VSWTALVKGYV 121
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
G A LF KM V + L A KL + +KD
Sbjct: 122 HNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIP--------DKDNI 173
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
T++I K G+ AR FD E+ W M++GYG+N + A +IFD+M +
Sbjct: 174 ARTSMIHGLCKEGRVDEAREIFD--EMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPE 231
Query: 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC--MVDLLGRSGR 302
+ S+ ++L G ++ A ++F +M P + C M+ LG+ G
Sbjct: 232 K----TEVSWTSMLMGYVQNGRIEDAEELFEVM-------PVKPVIACNAMISGLGQKGE 280
Query: 303 LDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEE-----MAMKLQEMEPENPTPFVI 357
+ +AR + + E + + +++ H + E + M+ Q + P PT I
Sbjct: 281 IAKARRVFDSMKERNDASWQTVIK---IHERNGFELEALDLFILMQKQGVRPTFPTLISI 337
Query: 358 LS 359
LS
Sbjct: 338 LS 339
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 21/214 (9%)
Query: 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHG 172
P T N I+ S++G EA KLF+ S + V + A KL E
Sbjct: 17 PPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPD 76
Query: 173 HVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD-DPAFWNAMISGYGRNGE 231
I + L+S YMK G+ AR+ FD + P+ + W A++ GY NG+
Sbjct: 77 RNIIS--------WNGLVSGYMKNGEIDEARKVFD---LMPERNVVSWTALVKGYVHNGK 125
Query: 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG 291
+ A +F M ++ N S+ +L G +D A +++ M+ D +
Sbjct: 126 VDVAESLFWKMPEK----NKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTS---- 177
Query: 292 CMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325
M+ L + GR+DEARE+ E+ E +V + +++
Sbjct: 178 -MIHGLCKEGRVDEAREIFDEMSERSVITWTTMV 210
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 38/136 (27%)
Query: 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCA 65
S +PN VTF++ +SAC+ ++ G LKI + +++ G + + C
Sbjct: 428 STKPNEVTFVATLSACSYAGMVEEG-------LKIYESMESVFGVKPITAHYAC------ 474
Query: 66 HNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG--- 122
M+ + GR +AME+ + + E PD A W S++
Sbjct: 475 ------------------MVDMLGRAGRFNEAMEMIDSMTVE---PDAAVWGSLLGACRT 513
Query: 123 FSQLGM-RFEAFKLFE 137
SQL + F A KL E
Sbjct: 514 HSQLDVAEFCAKKLIE 529
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 210/385 (54%), Gaps = 21/385 (5%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
EP+ TF S++ AC L +G ++H +K S++ +G +L+DMY KCG + A
Sbjct: 480 EPDEFTFGSILKACTGG-SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 538
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
+ N+ ME E + ++ + +WNS+ISG+
Sbjct: 539 IHSRFFQRANV----------------SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKE 582
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
+A LF +M G+ P +VL CA+L++ LGK+ H VI+ +L D + +
Sbjct: 583 QSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICS 642
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
L+ MY KCG +R F++ + D WNAMI GY +G+ E A+++F+ M E +
Sbjct: 643 TLVDMYSKCGDLHDSRLMFEKSLRR--DFVTWNAMICGYAHHGKGEEAIQLFERMILENI 700
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
KPN +F+++L AC H G +DK L+ F MM D+GL P+ H+ MVD+LG+SG++ A
Sbjct: 701 KPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRAL 760
Query: 308 ELIRELP-EPTVSVYHSLLGACWCHLNS-DLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365
ELIRE+P E ++ +LLG C H N+ ++ EE L ++P++ + + +LSN+YA
Sbjct: 761 ELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADA 820
Query: 366 GRWEDVGRIRQMINDRQLTKLPGIS 390
G WE V +R+ + +L K PG S
Sbjct: 821 GMWEKVSDLRRNMRGFKLKKEPGCS 845
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 42/297 (14%)
Query: 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELK 73
+ SV+ +CA+L L+ G Q+H LK + +D ++ TA +DMY KC + A +F
Sbjct: 284 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFD--- 340
Query: 74 GSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAF 133
S N LN +S AM I+G+SQ F+A
Sbjct: 341 NSEN------------LNRQSYNAM---------------------ITGYSQEEHGFKAL 367
Query: 134 KLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY 193
LF ++ S+G+ ++ V ACA + L G + +G I++ L+ D +A A I MY
Sbjct: 368 LLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMY 427
Query: 194 MKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253
KC + A R FD E++ D WNA+I+ + +NG+ + +F M + +++P+ +
Sbjct: 428 GKCQALAEAFRVFD--EMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 485
Query: 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC-MVDLLGRSGRLDEAREL 309
F ++L AC G + ++I + + G+ GC ++D+ + G ++EA ++
Sbjct: 486 FGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSS-VGCSLIDMYSKCGMIEEAEKI 539
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 157/366 (42%), Gaps = 55/366 (15%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
E + TF ++ C+ L G Q+HG+ +++ +D + +AL+DMY K
Sbjct: 177 EFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAK--------- 227
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
G R + +++ +F+G+ + + +W+++I+G Q
Sbjct: 228 ------GKRFV-----------------ESLRVFQGIP----EKNSVSWSAIIAGCVQNN 260
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
+ A K F++MQ S SVL +CA LS L+LG + H H +++D D + T
Sbjct: 261 LLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRT 320
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
A + MY KC A+ FD E + +NAMI+GY + A+ +F + +
Sbjct: 321 ATLDMYAKCDNMQDAQILFDNSE--NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 378
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCM----VDLLGRSGRL 303
+ S V AC + + LQI+ + +K C+ +D+ G+ L
Sbjct: 379 GFDEISLSGVFRACALVKGLSEGLQIYGL-----AIKSSLSLDVCVANAAIDMYGKCQAL 433
Query: 304 DEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEE-----MAMKLQEMEPENPTPFVIL 358
EA + E+ +++++ A H + G E ++M +EP+ T IL
Sbjct: 434 AEAFRVFDEMRRRDAVSWNAIIAA---HEQNGKGYETLFLFVSMLRSRIEPDEFTFGSIL 490
Query: 359 SNIYAG 364
G
Sbjct: 491 KACTGG 496
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 145/365 (39%), Gaps = 63/365 (17%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
+ ++ V ACA + L G Q++GL +K D + A +DMY KC L A VF
Sbjct: 381 DEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVF 440
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
E++ R+ ++WN +IA NG+ + + LF + +PD T+
Sbjct: 441 DEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFG------------ 487
Query: 130 FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL 189
S+L AC +L G E H ++++ + + S+ +L
Sbjct: 488 -----------------------SILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSL 523
Query: 190 ISMYMKCGQPSWAR----RFFDQFEIKPDDPAF--------------WNAMISGYGRNGE 231
I MY KCG A RFF + + WN++ISGY +
Sbjct: 524 IDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 583
Query: 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG 291
E A +F M + + P+ ++ VL C + QI + + + + +
Sbjct: 584 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQV---IKKELQSDVYI 640
Query: 292 C--MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349
C +VD+ + G L ++R + + +++++ H GEE + M
Sbjct: 641 CSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH---GKGEEAIQLFERMIL 697
Query: 350 ENPTP 354
EN P
Sbjct: 698 ENIKP 702
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 14/261 (5%)
Query: 7 DEPNSVT---FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLP 63
++ NSV+ F V CA L+ G+Q H + + T + L+ +Y
Sbjct: 41 NQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFV 100
Query: 64 CAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKP--DPATWNSMIS 121
A VF ++ R++++WN MI NG S K+ ++F+ + P D +WNSM+S
Sbjct: 101 SASMVFDKMP-LRDVVSWNKMI-----NGYS-KSNDMFKANSFFNMMPVRDVVSWNSMLS 153
Query: 122 GFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK 181
G+ Q G ++ ++F M G+ + +L C+ L LG + HG V+R +
Sbjct: 154 GYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDT 213
Query: 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241
D A+AL+ MY K + + R F I + W+A+I+G +N A++ F
Sbjct: 214 DVVAASALLDMYAKGKRFVESLRVFQG--IPEKNSVSWSAIIAGCVQNNLLSLALKFFKE 271
Query: 242 MQQEKVKPNSASFVAVLSACG 262
MQ+ + + + +VL +C
Sbjct: 272 MQKVNAGVSQSIYASVLRSCA 292
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 36/268 (13%)
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
R +F F + S + V CA AL+LGK+ H H+I + +
Sbjct: 29 RVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNC 88
Query: 189 LISMYMKCGQPSWARRFFDQ----------------------------FEIKP-DDPAFW 219
L+ +Y A FD+ F + P D W
Sbjct: 89 LLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSW 148
Query: 220 NAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279
N+M+SGY +NGE ++E+F M +E ++ + +F +L C +QI ++
Sbjct: 149 NSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIV-V 207
Query: 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEE 339
G ++D+ + R E+ + + +PE + +++ C + ++L
Sbjct: 208 RVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGC---VQNNLLSL 264
Query: 340 MAMKLQEMEPENPTPFVILSNIYAGLGR 367
+EM+ N + +IYA + R
Sbjct: 265 ALKFFKEMQKVNAG---VSQSIYASVLR 289
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 244 bits (624), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 217/382 (56%), Gaps = 8/382 (2%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
+S T +VI+AC L +L+ G+Q+H K D ++ + L+DMY KCG A +F
Sbjct: 317 DSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLF 376
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
E++ IL N+MI GR + A +FE + ++ +WNSM +GFSQ G
Sbjct: 377 SEVESYDTILL-NSMIKVYFSCGRIDDAKRVFERIENKSL----ISWNSMTNGFSQNGCT 431
Query: 130 FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL 189
E + F +M + ++SV+SACA +S+L+LG++ L+ D+ ++++L
Sbjct: 432 VETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSL 491
Query: 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
I +Y KCG RR FD +K D+ WN+MISGY NG+ A+++F M ++P
Sbjct: 492 IDLYCKCGFVEHGRRVFDTM-VKSDEVP-WNSMISGYATNGQGFEAIDLFKKMSVAGIRP 549
Query: 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309
+F+ VL+AC + G V++ ++F M D G P +EHF CMVDLL R+G ++EA L
Sbjct: 550 TQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINL 609
Query: 310 IRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368
+ E+P + S++ S+L C + +G++ A K+ E+EPEN +V LS I+A G W
Sbjct: 610 VEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDW 669
Query: 369 EDVGRIRQMINDRQLTKLPGIS 390
E +R+++ + +TK PG S
Sbjct: 670 ESSALVRKLMRENNVTKNPGSS 691
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 36/350 (10%)
Query: 5 LSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC 64
L+ +++T +V+ ACA L L+ G+Q+H L + D+ + ++LV++Y KCG L
Sbjct: 181 LNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRM 240
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
A + ++++ + + + +I+G GR ++ LF+ ++ WNSMISG+
Sbjct: 241 ASYMLEQIREPDD-HSLSALISGYANCGRVNESRGLFDRKSNRCV----ILWNSMISGYI 295
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
M+ EA LF +M++ S + + +V++AC L L+ GK+ H H + L D
Sbjct: 296 ANNMKMEALVLFNEMRNETREDS-RTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIV 354
Query: 185 MATALISMYMKCGQPSWARRFFDQFE-----------------------------IKPDD 215
+A+ L+ MY KCG P A + F + E I+
Sbjct: 355 VASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKS 414
Query: 216 PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT 275
WN+M +G+ +NG +E F M + + + S +V+SAC ++ Q+F
Sbjct: 415 LISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFA 474
Query: 276 MMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325
GL Q ++DL + G ++ R + + + ++S++
Sbjct: 475 RA-TIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMI 523
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 110/439 (25%), Positives = 182/439 (41%), Gaps = 99/439 (22%)
Query: 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMI-GTALVDMYLKCGCLPCAHNVFQEL 72
++ ++ +C+S RQ +GL LK S +I L+ MY + G + A N+F E+
Sbjct: 29 YVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEM 88
Query: 73 KGSRNILTWNTMIAGMMLNGRSEKAMELFE---------------GLAHEGF-------- 109
RN +WNTMI G M +G ++ F+ G A G
Sbjct: 89 P-DRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147
Query: 110 ----KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165
+ D T NS++ G+ G EA +LF+++ + +L T+VL ACA+L ALK
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITL---TTVLKACAELEALK 204
Query: 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPA-------- 217
GK+ H ++ + D M ++L+++Y KCG A +Q +PDD +
Sbjct: 205 CGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIR-EPDDHSLSALISGY 263
Query: 218 ----------------------FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255
WN+MISGY N A+ +F+ M+ E + +S +
Sbjct: 264 ANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNE-TREDSRTLA 322
Query: 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315
AV++AC G ++ Q+ FGL ++D+ + G EA +L E
Sbjct: 323 AVINACIGLGFLETGKQMHCHA-CKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSE--- 378
Query: 316 PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIR 375
V Y ++L LNS + +Y GR +D R+
Sbjct: 379 --VESYDTIL------LNS-----------------------MIKVYFSCGRIDDAKRVF 407
Query: 376 QMINDRQLTKLPGISAGIT 394
+ I ++ L ++ G +
Sbjct: 408 ERIENKSLISWNSMTNGFS 426
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 244 bits (624), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 217/385 (56%), Gaps = 9/385 (2%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ ++ +S IS+C+ L + +G+ HG L+ +S I AL+DMY+KC A +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + ++ ++TWN+++AG + NG + A E FE + + +WN++ISG Q +
Sbjct: 395 FDRM-SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSL 449
Query: 129 RFEAFKLFEKMQST-GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
EA ++F MQS G+ + S+ SAC L AL L K + ++ + + D + T
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGT 509
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
L+ M+ +CG P A F+ + D + W A I G E A+E+FD M ++ +
Sbjct: 510 TLVDMFSRCGDPESAMSIFNSLTNR--DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGL 567
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
KP+ +FV L+AC H G V + +IF M G+ P+ H+GCMVDLLGR+G L+EA
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627
Query: 308 ELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366
+LI ++P EP +++SLL AC N ++ A K+Q + PE +V+LSN+YA G
Sbjct: 628 QLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 687
Query: 367 RWEDVGRIRQMINDRQLTKLPGISA 391
RW D+ ++R + ++ L K PG S+
Sbjct: 688 RWNDMAKVRLSMKEKGLRKPPGTSS 712
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 152/345 (44%), Gaps = 71/345 (20%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PNSVT + VISACA L L+ G +V+ + + ++ +ALVDMY+KC + A +
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F E G+ N+ N M + + G + +A+ +F + G +PD +
Sbjct: 294 FDEY-GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS------------- 339
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
+ S +S+C+ L + GK HG+V+R +++ A
Sbjct: 340 ----------------------MLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA 377
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGE----------------- 231
LI MYMKC + A R FD+ K WN++++GY NGE
Sbjct: 378 LIDMYMKCHRQDTAFRIFDRMSNKT--VVTWNSIVAGYVENGEVDAAWETFETMPEKNIV 435
Query: 232 --------------YESAVEIFDLMQ-QEKVKPNSASFVAVLSACGHAGHVDKALQIFTM 276
+E A+E+F MQ QE V + + +++ SACGH G +D A I+
Sbjct: 436 SWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY 495
Query: 277 MDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVY 321
++ + G++ +VD+ R G + A + L VS +
Sbjct: 496 IEKN-GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAW 539
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 44/321 (13%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ TF +SACA G Q+HGL +K+ D + +LV Y +CG L A V
Sbjct: 132 PDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKV 191
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F E+ RN+++W SMI G+++
Sbjct: 192 FDEM-SERNVVSWT-----------------------------------SMICGYARRDF 215
Query: 129 RFEAFKLFEKM-QSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
+A LF +M + + P+ + V+SACA L L+ G++ + + + + ++ M +
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS 275
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
AL+ MYMKC A+R FD++ D NAM S Y R G A+ +F+LM V
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLD--LCNAMASNYVRQGLTREALGVFNLMMDSGV 333
Query: 248 KPNSASFVAVLSACGHAGHV--DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305
+P+ S ++ +S+C ++ K+ + + + G + ++D+ + R D
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRN---GFESWDNICNALIDMYMKCHRQDT 390
Query: 306 ARELIRELPEPTVSVYHSLLG 326
A + + TV ++S++
Sbjct: 391 AFRIFDRMSNKTVVTWNSIVA 411
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 4/198 (2%)
Query: 116 WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVI 175
+NS+I G++ G+ EA LF +M ++G+ P LSACA A G + HG ++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 176 RADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESA 235
+ KD + +L+ Y +CG+ AR+ FD E+ + W +MI GY R + A
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFD--EMSERNVVSWTSMICGYARRDFAKDA 219
Query: 236 VEI-FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294
V++ F +++ E+V PNS + V V+SAC ++ +++ + + G++ +V
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEVNDLMVSALV 278
Query: 295 DLLGRSGRLDEARELIRE 312
D+ + +D A+ L E
Sbjct: 279 DMYMKCNAIDVAKRLFDE 296
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQS--DTMIGTALVDMYLKCGCLPCA 65
+P+ V F+ ++AC+ +Q G+++ LK+ S D G +VD+ + G L A
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYG-CMVDLLGRAGLLEEA 626
Query: 66 HNVFQELKGSRNILTWNTMIAGMMLNGRSEKA 97
+ +++ N + WN+++A + G E A
Sbjct: 627 VQLIEDMPMEPNDVIWNSLLAACRVQGNVEMA 658
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 218/387 (56%), Gaps = 10/387 (2%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
P+ F +++ ACA+L + GRQVH + E +D ++ ++LVDMY KCG L A
Sbjct: 102 RPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKA 161
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF ++ +N ++W M++G +GR E+A+ELF L + +W ++ISGF Q G
Sbjct: 162 VFDSIR-VKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLY----SWTALISGFVQSG 216
Query: 128 MRFEAFKLFEKMQSTGM-VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMA 186
EAF +F +M+ + + ++S++ ACA+L+A G++ HG VI + ++
Sbjct: 217 KGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFIS 276
Query: 187 TALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246
ALI MY KC A+ F + ++ D W ++I G ++G+ E A+ ++D M
Sbjct: 277 NALIDMYAKCSDVIAAKDIFSR--MRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHG 334
Query: 247 VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306
VKPN +FV ++ AC H G V+K ++F M D+G++P +H+ C++DLLGRSG LDEA
Sbjct: 335 VKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEA 394
Query: 307 RELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKL-QEMEPENPTPFVILSNIYAG 364
LI +P P + +LL AC +G +A L + ++P+ +++LSNIYA
Sbjct: 395 ENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYAS 454
Query: 365 LGRWEDVGRIRQMINDRQLTKLPGISA 391
W V R+ + + ++ K PG S+
Sbjct: 455 ASLWGKVSEARRKLGEMEVRKDPGHSS 481
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 82 NTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141
NT++ G + A+++F+ + H D W S+++ +Q + + +F + S
Sbjct: 42 NTLVNVYGKCGAASHALQVFDEMPHR----DHIAWASVLTALNQANLSGKTLSVFSSVGS 97
Query: 142 TGMV-PSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200
+ + P ++++ ACA+L ++ G++ H H I ++ DE + ++L+ MY KCG +
Sbjct: 98 SSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLN 157
Query: 201 WARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260
A+ FD +K + W AM+SGY ++G E A+E+F ++ + N S+ A++S
Sbjct: 158 SAKAVFDSIRVK--NTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWTALISG 211
Query: 261 CGHAGHVDKALQIFTMM 277
+G +A +FT M
Sbjct: 212 FVQSGKGLEAFSVFTEM 228
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 35/203 (17%)
Query: 155 LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD 214
L CA L K H H+++ + + +A L+++Y KCG S A + FD E+
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFD--EMPHR 67
Query: 215 DPAFWNAMISGYGR-NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQI 273
D W ++++ + N ++ + ++P+ F A++ AC + G +D Q+
Sbjct: 68 DHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQV 127
Query: 274 F----------------TMMD---------------DDFGLKPKQEHFGCMVDLLGRSGR 302
+++D D +K + MV +SGR
Sbjct: 128 HCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTIS-WTAMVSGYAKSGR 186
Query: 303 LDEARELIRELPEPTVSVYHSLL 325
+EA EL R LP + + +L+
Sbjct: 187 KEEALELFRILPVKNLYSWTALI 209
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 221/409 (54%), Gaps = 31/409 (7%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
NS T + AC + + G Q+HGL ++ + D +G +L+ MY K G + A VF
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVF 333
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE----------GF---------- 109
+K +++ ++WN++I G++ + +A ELFE + + GF
Sbjct: 334 GVMK-NKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCV 392
Query: 110 -------KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162
+ D TW +MIS F G EA F KM + P+ +SVLSA A L+
Sbjct: 393 ELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLA 452
Query: 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM 222
L G + HG V++ ++ D S+ +L+SMY KCG + A + F I + +N M
Sbjct: 453 DLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSC--ISEPNIVSYNTM 510
Query: 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFG 282
ISGY NG + A+++F +++ +PN +F+A+LSAC H G+VD + F M +
Sbjct: 511 ISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYN 570
Query: 283 LKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMA 341
++P +H+ CMVDLLGRSG LD+A LI +P +P V+ SLL A HL DL E A
Sbjct: 571 IEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAA 630
Query: 342 MKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
KL E+EP++ TP+V+LS +Y+ +G+ D RI + +++ K PG S
Sbjct: 631 KKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSS 679
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PNS TF SV+SA ASL L G Q+HG +K+ +D + +LV MY KCG A+ +
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + NI+++NTMI+G NG +KA++LF L G +P+ T+ +++S +G
Sbjct: 496 FSCI-SEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554
Query: 129 RFEAFKLFEKMQST 142
+K F+ M+S+
Sbjct: 555 VDLGWKYFKSMKSS 568
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 152/334 (45%), Gaps = 33/334 (9%)
Query: 4 CLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIE---KQSDTMIGTALVDMYLKCG 60
C E N+V++ ++I+ +++ GR L E K D++ L+ YL+ G
Sbjct: 137 CDIPEKNAVSYATMITG-----FVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAG 191
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
A VFQ + + +++ ++M+ G GR A LF+ + + TW +MI
Sbjct: 192 KWNEAVRVFQGM-AVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTER----NVITWTAMI 246
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL-SACADLSALKLGKETHGHVIRADL 179
G+ + G + F LF +M+ G V +V+ AC D + G + HG V R L
Sbjct: 247 DGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPL 306
Query: 180 NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIF 239
D + +L+SMY K G A+ F +K D WN++I+G + + A E+F
Sbjct: 307 EFDLFLGNSLMSMYSKLGYMGEAKAVFGV--MKNKDSVSWNSLITGLVQRKQISEAYELF 364
Query: 240 DLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH--FGCMVDLL 297
+ M + + S+ ++ G + K +++F MM P++++ + M+
Sbjct: 365 EKMPGKDM----VSWTDMIKGFSGKGEISKCVELFGMM-------PEKDNITWTAMISAF 413
Query: 298 GRSGRLDEA----RELIRELPEPTVSVYHSLLGA 327
+G +EA +++++ P + S+L A
Sbjct: 414 VSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 40/239 (16%)
Query: 53 VDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFE---------- 102
+ + + G L A +F+++ +R+I++W MI+ NG+ KA ++F+
Sbjct: 57 ISKHARNGNLQEAEAIFRQM-SNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSY 115
Query: 103 --------------GLAHEGF----KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM 144
G A+E F + + ++ +MI+GF + G EA L+ +
Sbjct: 116 NAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE------ 169
Query: 145 VPSLKCVTSVLSACADLSALKLGKETHG-HVIRADLNKDESMATALISMYMKCGQPSWAR 203
+K SV S L+ GK V + K+ ++++ Y K G+ AR
Sbjct: 170 -TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228
Query: 204 RFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-KVKPNSASFVAVLSAC 261
FD+ + + W AMI GY + G +E +F M+QE VK NS + + AC
Sbjct: 229 SLFDR--MTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKAC 285
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
IS + + G A F Q + W AMIS Y NG+ A ++FD M
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNR--SIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTS 114
Query: 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309
+A A++ G KA ++F + + + + M+ R+GR DEA L
Sbjct: 115 YNAMITAMIKNKCDLG---KAYELFCDIPEKNAVS-----YATMITGFVRAGRFDEAEFL 166
Query: 310 IRELP 314
E P
Sbjct: 167 YAETP 171
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVH---GLTLKIEKQSDTMIGTALVDMYL 57
M E EPN VTF++++SAC + Y+ G + + IE D +VD+
Sbjct: 529 MLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHY--ACMVDLLG 586
Query: 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPAT 115
+ G L A N+ + + W ++++ + R + A + L +PD AT
Sbjct: 587 RSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIE--LEPDSAT 642
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 214/385 (55%), Gaps = 8/385 (2%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+P++ T ++ AC L + G QVHG+T++ +D + T L+ +Y + GCL H
Sbjct: 105 KPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHK 164
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF + + + M+ G A +LFEG+ DP WN+MISG++Q+G
Sbjct: 165 VFNSIPCP-DFVCRTAMVTACARCGDVVFARKLFEGMPER----DPIAWNAMISGYAQVG 219
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
EA +F MQ G+ + + SVLSAC L AL G+ H ++ R + +AT
Sbjct: 220 ESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLAT 279
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
L+ +Y KCG A F E K + W++ ++G NG E +E+F LM+Q+ V
Sbjct: 280 TLVDLYAKCGDMEKAMEVFWGMEEK--NVYTWSSALNGLAMNGFGEKCLELFSLMKQDGV 337
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
PN+ +FV+VL C G VD+ + F M ++FG++P+ EH+GC+VDL R+GRL++A
Sbjct: 338 TPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAV 397
Query: 308 ELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366
+I+++P +P +V+ SLL A + N +LG + K+ E+E N +V+LSNIYA
Sbjct: 398 SIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSN 457
Query: 367 RWEDVGRIRQMINDRQLTKLPGISA 391
W++V +RQ + + + K PG S
Sbjct: 458 DWDNVSHVRQSMKSKGVRKQPGCSV 482
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 242 bits (618), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 205/382 (53%), Gaps = 39/382 (10%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
+SVT + ++ C YL GR +HG +K S+ + + + MY+KCG + +F
Sbjct: 155 DSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLF 214
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
E+ + G++ TWN++ISG+SQ G+
Sbjct: 215 DEMP-----------VKGLI-------------------------TWNAVISGYSQNGLA 238
Query: 130 FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL 189
++ +L+E+M+S+G+ P + SVLS+CA L A K+G E V + ++ A
Sbjct: 239 YDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNAS 298
Query: 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
ISMY +CG + AR FD +K W AMI YG +G E + +FD M + ++P
Sbjct: 299 ISMYARCGNLAKARAVFDIMPVK--SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRP 356
Query: 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309
+ A FV VLSAC H+G DK L++F M ++ L+P EH+ C+VDLLGR+GRLDEA E
Sbjct: 357 DGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEF 416
Query: 310 IRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368
I +P EP +V+ +LLGAC H N D+ E K+ E EP N +V++SNIY+
Sbjct: 417 IESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQ 476
Query: 369 EDVGRIRQMINDRQLTKLPGIS 390
E + RIR M+ +R K PG S
Sbjct: 477 EGIWRIRVMMRERAFRKKPGYS 498
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 110/249 (44%), Gaps = 12/249 (4%)
Query: 116 WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVI 175
WN + + + E+ L+ M +G P +L +CA LS G++ H HV
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 176 RADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESA 235
+ + + TALISMY KCG + AR+ F++ +NA+ISGY N + A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 236 VEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF---GLKPKQEHFGC 292
+F M++ V +S + + ++ C V + L + + GL +
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCT----VPEYLWLGRSLHGQCVKGGLDSEVAVLNS 196
Query: 293 MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN- 351
+ + + G ++ R L E+P + +++++ + + L ++ ++M+
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISG---YSQNGLAYDVLELYEQMKSSGV 253
Query: 352 -PTPFVILS 359
P PF ++S
Sbjct: 254 CPDPFTLVS 262
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 242 bits (618), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 207/377 (54%), Gaps = 31/377 (8%)
Query: 42 KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELF 101
++ + + T ++ Y + + A +F E+ + ++W +M+ G L+GR E A E F
Sbjct: 199 RERNVVTWTTMITGYRQNNRVDVARKLF-EVMPEKTEVSWTSMLLGYTLSGRIEDAEEFF 257
Query: 102 EGLAHE----------GF-----------------KPDPATWNSMISGFSQLGMRFEAFK 134
E + + GF D ATW MI + + G EA
Sbjct: 258 EVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALD 317
Query: 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194
LF +MQ G+ PS + S+LS CA L++L+ G++ H H++R + D +A+ L++MY+
Sbjct: 318 LFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYV 377
Query: 195 KCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254
KCG+ A+ FD+F K D WN++ISGY +G E A++IF M PN +
Sbjct: 378 KCGELVKAKLVFDRFSSK--DIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTL 435
Query: 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314
+A+L+AC +AG +++ L+IF M+ F + P EH+ C VD+LGR+G++D+A ELI +
Sbjct: 436 IAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMT 495
Query: 315 -EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373
+P +V+ +LLGAC H DL E A KL E EP+N +V+LS+I A +W DV
Sbjct: 496 IKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAV 555
Query: 374 IRQMINDRQLTKLPGIS 390
+R+ + ++K PG S
Sbjct: 556 VRKNMRTNNVSKFPGCS 572
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 141/375 (37%), Gaps = 97/375 (25%)
Query: 50 TALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMML------------------- 90
LV Y+K + A NVF EL RN+++W M+ G M
Sbjct: 83 NGLVSGYIKNRMIVEARNVF-ELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNE 141
Query: 91 ------------NGRSEKAMELFE---------------GLAHEGFKPDPA--------- 114
+GR +KA +L++ GL EG + D A
Sbjct: 142 VSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREG-RVDEARLIFDEMRE 200
Query: 115 ----TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKET 170
TW +MI+G+ Q A KLFE M V +++ LG
Sbjct: 201 RNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEV--------------SWTSMLLGYTL 246
Query: 171 HGHVIRADL------NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMIS 224
G + A+ K A+I + + G+ S ARR FD E + D A W MI
Sbjct: 247 SGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDR--DNATWRGMIK 304
Query: 225 GYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM-----DD 279
Y R G A+++F MQ++ V+P+ S +++LS C + Q+ + DD
Sbjct: 305 AYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDD 364
Query: 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEE 339
D + ++ + + G L +A+ + + +++S++ H LGEE
Sbjct: 365 DVYVA------SVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASH---GLGEE 415
Query: 340 MAMKLQEMEPENPTP 354
EM P
Sbjct: 416 ALKIFHEMPSSGTMP 430
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 123/280 (43%), Gaps = 28/280 (10%)
Query: 50 TALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF 109
++V Y G A +F E+ RN+++WN +++G + N +A +FE +
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEM-SERNVVSWNGLVSGYIKNRMIVEARNVFELMPER-- 108
Query: 110 KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKE 169
+ +W +M+ G+ Q GM EA LF +M V T + D + ++
Sbjct: 109 --NVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSW----TVMFGGLIDDGRIDKARK 162
Query: 170 THGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229
+ + KD +T +I + G+ AR FD E++ + W MI+GY +N
Sbjct: 163 LYDMMP----VKDVVASTNMIGGLCREGRVDEARLIFD--EMRERNVVTWTTMITGYRQN 216
Query: 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH 289
+ A ++F++M ++ S+ ++L +G ++ A + F +M P +
Sbjct: 217 NRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFFEVM-------PMKPV 265
Query: 290 FGC--MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGA 327
C M+ G G + +AR + + + + + ++ A
Sbjct: 266 IACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKA 305
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 121/278 (43%), Gaps = 41/278 (14%)
Query: 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWN 117
+ G + A F L+ + I +WN++++G NG ++A +LF+ ++ + +WN
Sbjct: 29 RIGKINEARKFFDSLQ-FKAIGSWNSIVSGYFSNGLPKEARQLFDEMSER----NVVSWN 83
Query: 118 SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177
++SG+ + M EA +FE M +V +A+ G G V A
Sbjct: 84 GLVSGYIKNRMIVEARNVFELMPERNVV--------------SWTAMVKGYMQEGMVGEA 129
Query: 178 DL------NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGE 231
+ ++E T + + G+ AR+ +D +K D MI G R G
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK--DVVASTNMIGGLCREGR 187
Query: 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG 291
+ A IFD M++ N ++ +++ VD A ++F +M P++
Sbjct: 188 VDEARLIFDEMRER----NVVTWTTMITGYRQNNRVDVARKLFEVM-------PEKTEVS 236
Query: 292 CMVDLLGR--SGRLDEARELIRELP-EPTVSVYHSLLG 326
LLG SGR+++A E +P +P ++ ++G
Sbjct: 237 WTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVG 274
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 105/262 (40%), Gaps = 64/262 (24%)
Query: 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCV 151
G+ +A + F+ L + +WNS++SG+ G+ EA +LF++M +V
Sbjct: 31 GKINEARKFFDSLQFKAI----GSWNSIVSGYFSNGLPKEARQLFDEMSERNVVS----- 81
Query: 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEI 211
L+S Y+K AR + FE+
Sbjct: 82 ----------------------------------WNGLVSGYIKNRMIVEAR---NVFEL 104
Query: 212 KPD-DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKA 270
P+ + W AM+ GY + G A +F M + N S+ + G +DKA
Sbjct: 105 MPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER----NEVSWTVMFGGLIDDGRIDKA 160
Query: 271 LQIFTMMDDDFGLKPKQEHFGC--MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGAC 328
+++ MM P ++ M+ L R GR+DEAR + E+ E V + +++
Sbjct: 161 RKLYDMM-------PVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGY 213
Query: 329 WCHLNSDLGEEMAMKLQEMEPE 350
+ D+ A KL E+ PE
Sbjct: 214 RQNNRVDV----ARKLFEVMPE 231
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
IS + G+ + AR+FFD + K WN+++SGY NG + A ++FD M +
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKA--IGSWNSIVSGYFSNGLPKEARQLFDEMSER---- 77
Query: 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE--HFGCMVDLLGRSGRLDEAR 307
N S+ ++S + +A +F +M P++ + MV + G + EA
Sbjct: 78 NVVSWNGLVSGYIKNRMIVEARNVFELM-------PERNVVSWTAMVKGYMQEGMVGEAE 130
Query: 308 ELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
L +PE + + G L D + A KL +M P V +N+ GL R
Sbjct: 131 SLFWRMPERNEVSWTVMFGG----LIDDGRIDKARKLYDMMPVKDV--VASTNMIGGLCR 184
Query: 368 WEDVGRIRQMIND 380
V R + ++
Sbjct: 185 EGRVDEARLIFDE 197
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 242 bits (617), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 219/412 (53%), Gaps = 39/412 (9%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+P++ + S++ A A +L+ G+ +HG L+ + D + T L+DMY+K G LP A
Sbjct: 222 KPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARM 281
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF ++ ++NI+ WN++++G+ + A L + EG KPD TWNS+ SG++ LG
Sbjct: 282 VF-DMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLG 340
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD--------------------------- 160
+A + KM+ G+ P++ T++ S C+
Sbjct: 341 KPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMS 400
Query: 161 --------LSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212
LS L GKE HG +R +L D +ATAL+ MY K G A F + IK
Sbjct: 401 TLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIF--WGIK 458
Query: 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQ 272
A WN M+ GY G E + F +M + ++P++ +F +VLS C ++G V + +
Sbjct: 459 NKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWK 518
Query: 273 IFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCH 331
F +M +G+ P EH CMVDLLGRSG LDEA + I+ + +P +++ + L +C H
Sbjct: 519 YFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIH 578
Query: 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383
+ +L E +LQ +EP N ++++ N+Y+ L RWEDV RIR ++ + ++
Sbjct: 579 RDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRV 630
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 166/331 (50%), Gaps = 37/331 (11%)
Query: 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQEL 72
T + ++ C++ GRQ+HG L++ +S+ + +L+ MY + G L + VF +
Sbjct: 91 TMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSM 150
Query: 73 KGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEA 132
K RN+ +WN++++ G + A+ L + + G KPD TWNS++SG++ G+ +A
Sbjct: 151 K-DRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDA 209
Query: 133 FKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISM 192
+ ++MQ G+ PS ++S+L A A+ LKLGK HG+++R L D + T LI M
Sbjct: 210 IAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDM 269
Query: 193 YMKCGQPSWARRFFDQFE----------------------------------IKPDDPAF 218
Y+K G +AR FD + IKP D
Sbjct: 270 YIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKP-DAIT 328
Query: 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278
WN++ SGY G+ E A+++ M+++ V PN S+ A+ S C G+ AL++F M
Sbjct: 329 WNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQ 388
Query: 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309
++ G+ P ++ +LG L +E+
Sbjct: 389 EE-GVGPNAATMSTLLKILGCLSLLHSGKEV 418
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 20/249 (8%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PN+ T +++ L L G++VHG L+ D + TALVDMY K G L A +
Sbjct: 394 PNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEI 453
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F +K ++++ +WN M+ G + GR E+ + F + G +PD T+ S++S G+
Sbjct: 454 FWGIK-NKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGL 512
Query: 129 RFEAFKLFEKMQST-GMVPSLK---CVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
E +K F+ M+S G++P+++ C+ +L L E + L D +
Sbjct: 513 VQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLD------EAWDFIQTMSLKPDAT 566
Query: 185 MATALIS-----MYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIF 239
+ A +S ++ + +W R ++P + A + MI+ Y +E I
Sbjct: 567 IWGAFLSSCKIHRDLELAEIAWKRLQV----LEPHNSANYMMMINLYSNLNRWEDVERIR 622
Query: 240 DLMQQEKVK 248
+LM+ +V+
Sbjct: 623 NLMRNNRVR 631
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 123/280 (43%), Gaps = 40/280 (14%)
Query: 25 LYLQFGRQVHG-LTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNT 83
+Y G +HG L + SDT + +A + Y +C L A+ +F E+ R+ L WN
Sbjct: 1 MYRFLGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMP-KRDDLAWNE 59
Query: 84 MIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG 143
++ + +G EKA+ELF + G K +T
Sbjct: 60 IVMVNLRSGNWEKAVELFREMQFSGAKAYDST---------------------------- 91
Query: 144 MVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWAR 203
+ +L C++ G++ HG+V+R L + SM +LI MY + G+ +R
Sbjct: 92 -------MVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSR 144
Query: 204 RFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263
+ F+ +K + + WN+++S Y + G + A+ + D M+ +KP+ ++ ++LS
Sbjct: 145 KVFNS--MKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYAS 202
Query: 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRL 303
G A+ + M GLKP ++ + G L
Sbjct: 203 KGLSKDAIAVLKRMQIA-GLKPSTSSISSLLQAVAEPGHL 241
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 166 LGKETHGHVIRADL-NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMIS 224
LG HG +I+ L N D + +A + Y +C +A + FD+ K DD A WN ++
Sbjct: 5 LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMP-KRDDLA-WNEIVM 62
Query: 225 GYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK 284
R+G +E AVE+F MQ K ++ V +L C + + QI + GL+
Sbjct: 63 VNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYV-LRLGLE 121
Query: 285 PKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGA 327
++ + R+G+L+ +R++ + + +S ++S+L +
Sbjct: 122 SNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSS 164
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 219/383 (57%), Gaps = 8/383 (2%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+++TF +I A + + + G Q H ++ Q+D + +LV MY CG + A +
Sbjct: 115 PDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRI 174
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F ++ G R++++W +M+AG G E A E+F+ + H TW+ MI+G+++
Sbjct: 175 FGQM-GFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNL----FTWSIMINGYAKNNC 229
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
+A LFE M+ G+V + + SV+S+CA L AL+ G+ + +V+++ + + + TA
Sbjct: 230 FEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA 289
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
L+ M+ +CG A F+ + D W+++I G +G A+ F M
Sbjct: 290 LVDMFWRCGDIEKAIHVFEG--LPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFI 347
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P +F AVLSAC H G V+K L+I+ M D G++P+ EH+GC+VD+LGR+G+L EA
Sbjct: 348 PRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAEN 407
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
I ++ +P + +LLGAC + N+++ E + L +++PE+ +V+LSNIYA G+
Sbjct: 408 FILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQ 467
Query: 368 WEDVGRIRQMINDRQLTKLPGIS 390
W+ + +R M+ ++ + K PG S
Sbjct: 468 WDKIESLRDMMKEKLVKKPPGWS 490
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 40/255 (15%)
Query: 111 PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKET 170
P+ +N +I FS +AF + +M + + P ++ A +++ + +G++T
Sbjct: 80 PNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQT 139
Query: 171 HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQ---------------------- 208
H ++R D + +L+ MY CG + A R F Q
Sbjct: 140 HSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMV 199
Query: 209 ------FEIKPDDPAF-WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC 261
F+ P F W+ MI+GY +N +E A+++F+ M++E V N V+V+S+C
Sbjct: 200 ENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSC 259
Query: 262 GHAGHVDKALQIF-----TMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEP 316
H G ++ + + + M + L +VD+ R G +++A + LPE
Sbjct: 260 AHLGALEFGERAYEYVVKSHMTVNLILGT------ALVDMFWRCGDIEKAIHVFEGLPET 313
Query: 317 TVSVYHSLLGACWCH 331
+ S++ H
Sbjct: 314 DSLSWSSIIKGLAVH 328
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 241 bits (616), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 216/384 (56%), Gaps = 10/384 (2%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ + +++SAC +++ R ++ ++ + + DT + TALV MY GC+ A
Sbjct: 210 PDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREF 269
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F+++ RN+ M++G GR + A +F+ + K D W +MIS + +
Sbjct: 270 FRKM-SVRNLFVSTAMVSGYSKCGRLDDAQVIFD----QTEKKDLVCWTTMISAYVESDY 324
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA ++FE+M +G+ P + + SV+SACA+L L K H + L + S+ A
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPD-DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
LI+MY KCG R D FE P + W++MI+ +GE A+ +F M+QE V
Sbjct: 385 LINMYAKCGGLDATR---DVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENV 441
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
+PN +FV VL C H+G V++ +IF M D++ + PK EH+GCMVDL GR+ L EA
Sbjct: 442 EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREAL 501
Query: 308 ELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366
E+I +P V ++ SL+ AC H +LG+ A ++ E+EP++ V++SNIYA
Sbjct: 502 EVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQ 561
Query: 367 RWEDVGRIRQMINDRQLTKLPGIS 390
RWEDV IR+++ ++ + K G+S
Sbjct: 562 RWEDVRNIRRVMEEKNVFKEKGLS 585
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 173/350 (49%), Gaps = 13/350 (3%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
+ +F+ ++ A + + L G ++HG+ KI D + T +DMY CG + A NVF
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVF 169
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG-M 128
E+ R+++TWNTMI G ++A +LFE + PD +++S + G M
Sbjct: 170 DEM-SHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM 228
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
R+ ++E + + +T++++ A + + +E R ++ ++TA
Sbjct: 229 RYNR-AIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMARE----FFRKMSVRNLFVSTA 283
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
++S Y KCG+ A+ FDQ E K D W MIS Y + + A+ +F+ M +K
Sbjct: 284 MVSGYSKCGRLDDAQVIFDQTEKK--DLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK 341
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ S +V+SAC + G +DKA + + + + GL+ + ++++ + G LD R+
Sbjct: 342 PDVVSMFSVISACANLGILDKAKWVHSCIHVN-GLESELSINNALINMYAKCGGLDATRD 400
Query: 309 LIRELPEPTVSVYHSLLGACWCH--LNSDLGEEMAMKLQEMEPENPTPFV 356
+ ++P V + S++ A H + L MK + +EP N FV
Sbjct: 401 VFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEP-NEVTFV 449
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 34/260 (13%)
Query: 4 CLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLP 63
C +P+ V+ SVISACA+L L + VH +S+ I AL++MY KCG L
Sbjct: 337 CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLD 396
Query: 64 CAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123
+VF+++ RN+++W++MI + ++G + A+ LF + E +P+ T+ ++ G
Sbjct: 397 ATRDVFEKMP-RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGC 455
Query: 124 SQLGMRFEAFKLFEKM-QSTGMVPSLK---CVTSVLSACADLSALKLGKETHGHVIRADL 179
S G+ E K+F M + P L+ C+ + +++R L
Sbjct: 456 SHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFG--------------RANLLREAL 501
Query: 180 NKDESMATA--------LISMYMKCGQPSW----ARRFFDQFEIKPDDPAFWNAMISGYG 227
ESM A L+S G+ A+R E++PD M + Y
Sbjct: 502 EVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRI---LELEPDHDGALVLMSNIYA 558
Query: 228 RNGEYESAVEIFDLMQQEKV 247
R +E I +M+++ V
Sbjct: 559 REQRWEDVRNIRRVMEEKNV 578
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 104/251 (41%), Gaps = 42/251 (16%)
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
A NVF + + +N + + + + ++ + H
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRH------------------ 104
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
+G R + F +P LK V+ V SAL G E HG + D
Sbjct: 105 -VGGRLDQF---------SFLPILKAVSKV-------SALFEGMELHGVAFKIATLCDPF 147
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
+ T + MY CG+ ++AR FD E+ D WN MI Y R G + A ++F+ M+
Sbjct: 148 VETGFMDMYASCGRINYARNVFD--EMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKD 205
Query: 245 EKVKPNSASFVAVLSACGHAGHV--DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302
V P+ ++SACG G++ ++A+ F + +D ++ +V + +G
Sbjct: 206 SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND---VRMDTHLLTALVTMYAGAGC 262
Query: 303 LDEARELIREL 313
+D ARE R++
Sbjct: 263 MDMAREFFRKM 273
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 211/383 (55%), Gaps = 40/383 (10%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEK-QSDTMIGTALVDMYLKCGCLPCAHNV 68
N +T +SV+ A + ++FGR VHGL L+ + + D IG++LVDMY KC C A V
Sbjct: 203 NEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKV 262
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F E+ SRN++TW ++I+G+ Q
Sbjct: 263 FDEMP-SRNVVTWT-----------------------------------ALIAGYVQSRC 286
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
+ +FE+M + + P+ K ++SVLSACA + AL G+ H ++I+ + + + T
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTT 346
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI +Y+KCG A F++ K + W AMI+G+ +G A ++F M V
Sbjct: 347 LIDLYVKCGCLEEAILVFERLHEK--NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVS 404
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
PN +F+AVLSAC H G V++ ++F M F ++PK +H+ CMVDL GR G L+EA+
Sbjct: 405 PNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKA 464
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
LI +P EPT V+ +L G+C H + +LG+ A ++ +++P + + +L+N+Y+
Sbjct: 465 LIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQN 524
Query: 368 WEDVGRIRQMINDRQLTKLPGIS 390
W++V R+R+ + D+Q+ K PG S
Sbjct: 525 WDEVARVRKQMKDQQVVKSPGFS 547
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 123/251 (49%), Gaps = 8/251 (3%)
Query: 82 NTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141
N++I+G +G + A LF+G + D TW +MI GF + G EA F +M+
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDK----DVVTWTAMIDGFVRNGSASEAMVYFVEMKK 197
Query: 142 TGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK-DESMATALISMYMKCGQPS 200
TG+ + V SVL A + ++ G+ HG + K D + ++L+ MY KC
Sbjct: 198 TGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYD 257
Query: 201 WARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260
A++ FD E+ + W A+I+GY ++ ++ + +F+ M + V PN + +VLSA
Sbjct: 258 DAQKVFD--EMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSA 315
Query: 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSV 320
C H G + + ++ M + ++ ++DL + G L+EA + L E V
Sbjct: 316 CAHVGALHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYT 374
Query: 321 YHSLLGACWCH 331
+ +++ H
Sbjct: 375 WTAMINGFAAH 385
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PN T SV+SACA + L GR+VH +K + +T GT L+D+Y+KCGCL A V
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F+ L +N+ TW MI G +G + A +LF + P+ T+ +++S + G+
Sbjct: 364 FERLH-EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGL 422
Query: 129 RFEAFKLFEKMQ 140
E +LF M+
Sbjct: 423 VEEGRRLFLSMK 434
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 10/242 (4%)
Query: 116 WNSMISGFS---QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHG 172
W+S+I FS L R +F + M+ G++PS +L A L + H
Sbjct: 70 WDSLIGHFSGGITLNRRL-SFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHA 127
Query: 173 HVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEY 232
H+++ L+ D + +LIS Y G +A R FD E K D W AMI G+ RNG
Sbjct: 128 HIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDK--DVVTWTAMIDGFVRNGSA 185
Query: 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292
A+ F M++ V N + V+VL A G V + + + +K
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSS 245
Query: 293 MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352
+VD+ G+ D+A+++ E+P V + +L+ ++ S ++ + +EM +
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAG---YVQSRCFDKGMLVFEEMLKSDV 302
Query: 353 TP 354
P
Sbjct: 303 AP 304
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 208/384 (54%), Gaps = 39/384 (10%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+P+S T SV+ + + + G+++HG ++ SD IG++LVDMY K + +
Sbjct: 239 KPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSER 298
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF L + D +WNS+++G+ Q G
Sbjct: 299 VFSRL------------------------------------YCRDGISWNSLVAGYVQNG 322
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
EA +LF +M + + P +SV+ ACA L+ L LGK+ HG+V+R + +A+
Sbjct: 323 RYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIAS 382
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
AL+ MY KCG AR+ FD+ + D W A+I G+ +G AV +F+ M+++ V
Sbjct: 383 ALVDMYSKCGNIKAARKIFDRMNVL--DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV 440
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
KPN +FVAVL+AC H G VD+A F M +GL + EH+ + DLLGR+G+L+EA
Sbjct: 441 KPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAY 500
Query: 308 ELIREL-PEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366
I ++ EPT SV+ +LL +C H N +L E++A K+ ++ EN +V++ N+YA G
Sbjct: 501 NFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNG 560
Query: 367 RWEDVGRIRQMINDRQLTKLPGIS 390
RW+++ ++R + + L K P S
Sbjct: 561 RWKEMAKLRLRMRKKGLRKKPACS 584
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 176/360 (48%), Gaps = 26/360 (7%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC---GCLPCA 65
P+ F SV+ +C ++ L+FG VHG +++ D G AL++MY K G
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISV 162
Query: 66 HNVFQEL-KGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
NVF E+ + + N + ++ + +FE + + D ++N++I+G++
Sbjct: 163 GNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMP----RKDVVSYNTIIAGYA 218
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
Q GM +A ++ +M +T + P ++SVL ++ + GKE HG+VIR ++ D
Sbjct: 219 QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVY 278
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
+ ++L+ MY K + + R F + + D WN++++GY +NG Y A+ +F M
Sbjct: 279 IGSSLVDMYAKSARIEDSERVFSRLYCR--DGISWNSLVAGYVQNGRYNEALRLFRQMVT 336
Query: 245 EKVKPNSASFVAVLSACGHAG--HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302
KVKP + +F +V+ AC H H+ K L + + G +VD+ + G
Sbjct: 337 AKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG---GFGSNIFIASALVDMYSKCGN 393
Query: 303 LDEAREL------IRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356
+ AR++ + E+ + + H+L G H L EE MK Q ++P N FV
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGH--GHEAVSLFEE--MKRQGVKP-NQVAFV 448
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 35/237 (14%)
Query: 111 PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKET 170
P W S+I F+ + +A F +M+++G P SVL +C + L+ G+
Sbjct: 68 PPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127
Query: 171 HGHVIRADLNKDESMATALISMYMKC---GQPSWARRFFDQ------------------- 208
HG ++R ++ D AL++MY K G FD+
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCI 187
Query: 209 -----------FEIKP-DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256
FE+ P D +N +I+GY ++G YE A+ + M +KP+S + +
Sbjct: 188 MPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247
Query: 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIREL 313
VL V K +I + G+ +VD+ +S R++++ + L
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSRL 303
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 210/384 (54%), Gaps = 40/384 (10%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PN +T +S++ LL L+ GR++HG +K + IG A++DMY KCG
Sbjct: 439 PNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCG-------- 490
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
R A E+FE L+ K D +WNSMI+ +Q
Sbjct: 491 ------------------------RMNLAYEIFERLS----KRDIVSWNSMITRCAQSDN 522
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
A +F +M +G+ +++ LSACA+L + GK HG +I+ L D +
Sbjct: 523 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSEST 582
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIF-DLMQQEKV 247
LI MY KCG A F +K + WN++I+ G +G+ + ++ +F +++++ +
Sbjct: 583 LIDMYAKCGNLKAAMNVFKT--MKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGI 640
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
+P+ +F+ ++S+C H G VD+ ++ F M +D+G++P+QEH+ C+VDL GR+GRL EA
Sbjct: 641 RPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAY 700
Query: 308 ELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366
E ++ +P P V+ +LLGAC H N +L E + KL +++P N +V++SN +A
Sbjct: 701 ETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAR 760
Query: 367 RWEDVGRIRQMINDRQLTKLPGIS 390
WE V ++R ++ +R++ K+PG S
Sbjct: 761 EWESVTKVRSLMKEREVQKIPGYS 784
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 155/323 (47%), Gaps = 45/323 (13%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PN+VTF V+S CAS L + G Q+HGL + + I +L+ MY KCG
Sbjct: 237 PNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCG-------- 288
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
R + A +LF ++ + D TWN MISG+ Q G+
Sbjct: 289 ------------------------RFDDASKLFRMMS----RADTVTWNCMISGYVQSGL 320
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
E+ F +M S+G++P +S+L + + L+ K+ H +++R ++ D + +A
Sbjct: 321 MEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSA 380
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI Y KC S A+ F Q D + AMISGY NG Y ++E+F + + K+
Sbjct: 381 LIDAYFKCRGVSMAQNIFSQ--CNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKIS 438
Query: 249 PNSASFVAVLSACG--HAGHVDKALQIFTMMDDDFGLKPKQEHFGC-MVDLLGRSGRLDE 305
PN + V++L G A + + L F ++ F + + GC ++D+ + GR++
Sbjct: 439 PNEITLVSILPVIGILLALKLGRELHGF-IIKKGFD---NRCNIGCAVIDMYAKCGRMNL 494
Query: 306 ARELIRELPEPTVSVYHSLLGAC 328
A E+ L + + ++S++ C
Sbjct: 495 AYEIFERLSKRDIVSWNSMITRC 517
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/363 (20%), Positives = 154/363 (42%), Gaps = 43/363 (11%)
Query: 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR 76
++ AC++ L+ G+QVH + D+ ++ MY CG +F L R
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 77 -NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKL 135
+I WN++I+ + NG +A+ + + G PD +T+ ++
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLV--------------- 145
Query: 136 FEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK 195
AC L K V ++ +E +A++LI Y++
Sbjct: 146 --------------------KACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLE 185
Query: 196 CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255
G+ + FD+ + D WN M++GY + G +S ++ F +M+ +++ PN+ +F
Sbjct: 186 YGKIDVPSKLFDR--VLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFD 243
Query: 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315
VLS C +D +Q+ ++ G+ + ++ + + GR D+A +L R +
Sbjct: 244 CVLSVCASKLLIDLGVQLHGLVVVS-GVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR 302
Query: 316 PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI-LSNIYAGLGRWEDVGRI 374
++ ++ ++ S L EE EM P I S++ + ++E++
Sbjct: 303 ADTVTWNCMISG---YVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 359
Query: 375 RQM 377
+Q+
Sbjct: 360 KQI 362
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 238 bits (606), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 203/384 (52%), Gaps = 40/384 (10%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ T S++ AC+ L G+ +HG ++ +D + +L+D+Y KCG A V
Sbjct: 307 PSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETV 366
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + + K +WN MIS + +G
Sbjct: 367 FSKTQ------------------------------------KDVAESWNVMISSYISVGN 390
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
F+A +++++M S G+ P + TSVL AC+ L+AL+ GK+ H + + L DE + +A
Sbjct: 391 WFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSA 450
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
L+ MY KCG A R F+ I D W MIS YG +G+ A+ FD MQ+ +K
Sbjct: 451 LLDMYSKCGNEKEAFRIFNS--IPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLK 508
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ + +AVLSACGHAG +D+ L+ F+ M +G++P EH+ CM+D+LGR+GRL EA E
Sbjct: 509 PDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYE 568
Query: 309 LIRELPEPT--VSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366
+I++ PE + + +L AC HL LG+ +A L E P++ + +++L N+YA
Sbjct: 569 IIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGE 628
Query: 367 RWEDVGRIRQMINDRQLTKLPGIS 390
W+ R+R + + L K PG S
Sbjct: 629 SWDAARRVRLKMKEMGLRKKPGCS 652
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 165/364 (45%), Gaps = 48/364 (13%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
EPNSV+ ISAC+ LL+L+ G+++H +K + D + +ALVDMY KC CL A
Sbjct: 205 EPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVARE 264
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VFQ++ + WNSMI G+ G
Sbjct: 265 VFQKMP------------------------------------RKSLVAWNSMIKGYVAKG 288
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
++ +M G PS +TS+L AC+ L GK HG+VIR+ +N D +
Sbjct: 289 DSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNC 348
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
+LI +Y KCG+ + A F + + D WN MIS Y G + AVE++D M V
Sbjct: 349 SLIDLYFKCGEANLAETVFSK--TQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGV 406
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
KP+ +F +VL AC ++K QI + + L+ + ++D+ + G EA
Sbjct: 407 KPDVVTFTSVLPACSQLAALEKGKQIHLSISES-RLETDELLLSALLDMYSKCGNEKEAF 465
Query: 308 ELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME-----PENPTPFVILSNI- 361
+ +P+ V + ++ A H E + EM+ P+ T +LS
Sbjct: 466 RIFNSIPKKDVVSWTVMISAYGSHGQP---REALYQFDEMQKFGLKPDGVTLLAVLSACG 522
Query: 362 YAGL 365
+AGL
Sbjct: 523 HAGL 526
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 123/256 (48%), Gaps = 38/256 (14%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+S TF +VI A +L GR +H L +K D ++ ++LV MY K N+
Sbjct: 105 PDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAK-------FNL 157
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F E ++++F+ + D A+WN++IS F Q G
Sbjct: 158 F-------------------------ENSLQVFDEMPER----DVASWNTVISCFYQSGE 188
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
+A +LF +M+S+G P+ +T +SAC+ L L+ GKE H ++ DE + +A
Sbjct: 189 AEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSA 248
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
L+ MY KC AR F + K WN+MI GY G+ +S VEI + M E +
Sbjct: 249 LVDMYGKCDCLEVAREVFQKMPRKS--LVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTR 306
Query: 249 PNSASFVAVLSACGHA 264
P+ + ++L AC +
Sbjct: 307 PSQTTLTSILMACSRS 322
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 143/317 (45%), Gaps = 40/317 (12%)
Query: 11 SVTFISVISACA-SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVF 69
S +S++ C S L+ + VH L + + D ++ +L+++Y C A +VF
Sbjct: 3 SSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVF 62
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129
+ + D WNS++SG+S+ M
Sbjct: 63 ENFD-----------------------------------IRSDVYIWNSLMSGYSKNSMF 87
Query: 130 FEAFKLFEKMQSTGM-VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
+ ++F+++ + + VP +V+ A L LG+ H V+++ D +A++
Sbjct: 88 HDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASS 147
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
L+ MY K + + FD E+ D A WN +IS + ++GE E A+E+F M+ +
Sbjct: 148 LVGMYAKFNLFENSLQVFD--EMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFE 205
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
PNS S +SAC +++ +I G + + +VD+ G+ L+ ARE
Sbjct: 206 PNSVSLTVAISACSRLLWLERGKEIHRKCVKK-GFELDEYVNSALVDMYGKCDCLEVARE 264
Query: 309 LIRELPEPTVSVYHSLL 325
+ +++P ++ ++S++
Sbjct: 265 VFQKMPRKSLVAWNSMI 281
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+P+ VTF SV+ AC+ L L+ G+Q+H + ++D ++ +AL+DMY KCG A
Sbjct: 407 KPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFR 466
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
+F + +++++W MI+ +G+ +A+ F+ + G KPD T +++S G
Sbjct: 467 IFNSIP-KKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAG 525
Query: 128 MRFEAFKLFEKMQST-GMVPSLK---CVTSVL 155
+ E K F +M+S G+ P ++ C+ +L
Sbjct: 526 LIDEGLKFFSQMRSKYGIEPIIEHYSCMIDIL 557
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 238 bits (606), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 211/384 (54%), Gaps = 40/384 (10%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+S T S++SAC+ L L+ G++VHG ++ + D + +++ +Y+ CG L +
Sbjct: 494 PDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQAL 553
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F AME +WN++I+G+ Q G
Sbjct: 554 FD--------------------------AME----------DKSLVSWNTVITGYLQNGF 577
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
A +F +M G+ + V AC+ L +L+LG+E H + ++ L D +A +
Sbjct: 578 PDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACS 637
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY K G + + + F+ +K A WNAMI GYG +G + A+++F+ MQ+
Sbjct: 638 LIDMYAKNGSITQSSKVFNG--LKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHN 695
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ +F+ VL+AC H+G + + L+ M FGLKP +H+ C++D+LGR+G+LD+A
Sbjct: 696 PDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALR 755
Query: 309 LIRE--LPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366
++ E E V ++ SLL +C H N ++GE++A KL E+EPE P +V+LSN+YAGLG
Sbjct: 756 VVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLG 815
Query: 367 RWEDVGRIRQMINDRQLTKLPGIS 390
+WEDV ++RQ +N+ L K G S
Sbjct: 816 KWEDVRKVRQRMNEMSLRKDAGCS 839
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 154/373 (41%), Gaps = 75/373 (20%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ T+ VI ACA + + G VHGL +K D +G ALV Y
Sbjct: 185 PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFY------------ 232
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
G+ +T A++LF+ + +WNSMI FS G
Sbjct: 233 -----GTHGFVT---------------DALQLFDIMPERNL----VSWNSMIRVFSDNGF 268
Query: 129 RFEAFKLF-EKMQSTG---MVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
E+F L E M+ G +P + + +VL CA + LGK HG ++ L+K+
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 328
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
+ AL+ MY KCG + A+ F K + WN M+ G+ G+ FD+++Q
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFKMNNNK--NVVSWNTMVGGFSAEGDTHGT---FDVLRQ 383
Query: 245 -----EKVKPNSASFVAVLSACGHAGHVD--KALQIFTMMDDDFGLKPKQEHF------G 291
E VK + + + + C H + K L +++ KQE
Sbjct: 384 MLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSL---------KQEFVYNELVAN 434
Query: 292 CMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSD-----LGEEMAMKLQE 346
V + G L A+ + + TV+ +++L+G H S+ L + MK+
Sbjct: 435 AFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG---HAQSNDPRLSLDAHLQMKISG 491
Query: 347 MEPENPTPFVILS 359
+ P++ T +LS
Sbjct: 492 LLPDSFTVCSLLS 504
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 53/270 (19%)
Query: 7 DEPNSVTFISVISACASLLY-------LQFGRQVHGLTLKIEK-QSDTMIGTALVDMYLK 58
DE +S F+ V A LL ++ GR++H L + ++D ++ T ++ MY
Sbjct: 73 DESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAM 132
Query: 59 CGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS 118
CG + VF L+ S+N+ WN +
Sbjct: 133 CGSPDDSRFVFDALR-SKNLFQWN-----------------------------------A 156
Query: 119 MISGFSQLGMRFEAFKLF-EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177
+IS +S+ + E + F E + +T ++P V+ ACA +S + +G HG V++
Sbjct: 157 VISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKT 216
Query: 178 DLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD-DPAFWNAMISGYGRNGEYESAV 236
L +D + AL+S Y G + A + FD I P+ + WN+MI + NG E +
Sbjct: 217 GLVEDVFVGNALVSFYGTHGFVTDALQLFD---IMPERNLVSWNSMIRVFSDNGFSEESF 273
Query: 237 EIFDLMQQEK----VKPNSASFVAVLSACG 262
+ M +E P+ A+ V VL C
Sbjct: 274 LLLGEMMEENGDGAFMPDVATLVTVLPVCA 303
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 12/202 (5%)
Query: 154 VLSACADLSALKLGKETHGHVI-RADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212
+L A +++G++ H V L D+ + T +I+MY CG P +R FD ++
Sbjct: 90 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA--LR 147
Query: 213 PDDPAFWNAMISGYGRNGEYESAVEIF-DLMQQEKVKPNSASFVAVLSACGHAGHVDKAL 271
+ WNA+IS Y RN Y+ +E F +++ + P+ ++ V+ AC V L
Sbjct: 148 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 207
Query: 272 QIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCH 331
+ ++ GL +V G G + +A +L +PE + ++S++
Sbjct: 208 AVHGLVVKT-GLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMI-----R 261
Query: 332 LNSDLG--EEMAMKLQEMEPEN 351
+ SD G EE + L EM EN
Sbjct: 262 VFSDNGFSEESFLLLGEMMEEN 283
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/362 (37%), Positives = 203/362 (56%), Gaps = 8/362 (2%)
Query: 31 RQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMML 90
R +H + +SD+ T L+ Y K G L CA VF E+ R++ WN MI G
Sbjct: 102 RLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEM-SKRDVPVWNAMITGYQR 160
Query: 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMV-PSLK 149
G + AMELF+ + + + +W ++ISGFSQ G EA K+F M+ V P+
Sbjct: 161 RGDMKAAMELFDSMP----RKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHI 216
Query: 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQF 209
V SVL ACA+L L++G+ G+ + + A I MY KCG A+R F++
Sbjct: 217 TVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL 276
Query: 210 EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDK 269
+ WN+MI +G+++ A+ +F M +E KP++ +FV +L AC H G V K
Sbjct: 277 G-NQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVK 335
Query: 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGAC 328
++F M++ + PK EH+GCM+DLLGR G+L EA +LI+ +P +P V+ +LLGAC
Sbjct: 336 GQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGAC 395
Query: 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPG 388
H N ++ E + L ++EP NP VI+SNIYA +W+ V R+R+++ +TK G
Sbjct: 396 SFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAG 455
Query: 389 IS 390
S
Sbjct: 456 YS 457
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 146/309 (47%), Gaps = 26/309 (8%)
Query: 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCA 65
S +PN +T +SV+ ACA+L L+ GR++ G + + + A ++MY KCG + A
Sbjct: 210 SVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVA 269
Query: 66 HNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125
+F+EL RN+ +WN+MI + +G+ ++A+ LF + EG KPD T+ ++
Sbjct: 270 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 329
Query: 126 LGMRFEAFKLFEKMQSTGMV-PSLK---CVTSVLSACADLSALKLGKETHGHVIRADLNK 181
GM + +LF+ M+ + P L+ C+ +L L +E + + +
Sbjct: 330 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKL------QEAYDLIKTMPMKP 383
Query: 182 DESMATALISMYMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
D + L+ G A + F+++P +P M + Y N +++ + +
Sbjct: 384 DAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRK 443
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQI--FTMMDDDFGLKPKQEHFGCMVDLLG 298
LM++E + A G++ V+ + + FT+ D P+ +++ +
Sbjct: 444 LMKKE----------TMTKAAGYSYFVEVGVDVHKFTVEDKS---HPRSYEIYQVLEEIF 490
Query: 299 RSGRLDEAR 307
R +L+++R
Sbjct: 491 RRMKLEKSR 499
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 6/194 (3%)
Query: 116 WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVI 175
+N +I + E+ L+ + G+ PS + +A A S+ + + H
Sbjct: 50 YNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFF 109
Query: 176 RADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESA 235
R+ D T LI+ Y K G ARR FD E+ D WNAMI+GY R G+ ++A
Sbjct: 110 RSGFESDSFCCTTLITAYAKLGALCCARRVFD--EMSKRDVPVWNAMITGYQRRGDMKAA 167
Query: 236 VEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295
+E+FD M ++ N S+ V+S G+ +AL++F M+ D +KP ++
Sbjct: 168 MELFDSMPRK----NVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223
Query: 296 LLGRSGRLDEAREL 309
G L+ R L
Sbjct: 224 ACANLGELEIGRRL 237
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 142/306 (46%), Gaps = 13/306 (4%)
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
A +F + S L +N +I ++ + +++ L+ L+ +G +P T+N + + +
Sbjct: 35 ARKLFDHHQNSCTFL-YNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASA 93
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
L + +G C T++++A A L AL + + + +D
Sbjct: 94 SFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSK----RDVP 149
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
+ A+I+ Y + G A FD K + W +ISG+ +NG Y A+++F M++
Sbjct: 150 VWNAMITGYQRRGDMKAAMELFDSMPRK--NVTSWTTVISGFSQNGNYSEALKMFLCMEK 207
Query: 245 EK-VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRL 303
+K VKPN + V+VL AC + G ++ ++ ++ G +++ + G +
Sbjct: 208 DKSVKPNHITVVSVLPACANLGELEIGRRLEGYAREN-GFFDNIYVCNATIEMYSKCGMI 266
Query: 304 DEARELIREL-PEPTVSVYHSLLGACWCHLNSDLGEEM-AMKLQEMEPENPTPFV--ILS 359
D A+ L EL + + ++S++G+ H D + A L+E E + FV +L+
Sbjct: 267 DVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLA 326
Query: 360 NIYAGL 365
++ G+
Sbjct: 327 CVHGGM 332
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 206/387 (53%), Gaps = 43/387 (11%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P++ TF SVI +CA L L+ G+ VH + DT + ALV Y KCG + A V
Sbjct: 105 PSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQV 164
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + EK++ WNS++SGF Q G+
Sbjct: 165 FDRMP---------------------EKSI---------------VAWNSLVSGFEQNGL 188
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA ++F +M+ +G P S+LSACA A+ LG H ++I L+ + + TA
Sbjct: 189 ADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTA 248
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-KV 247
LI++Y +CG AR FD+ +K + A W AMIS YG +G + AVE+F+ M+ +
Sbjct: 249 LINLYSRCGDVGKAREVFDK--MKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGP 306
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
PN+ +FVAVLSAC HAG V++ ++ M + L P EH CMVD+LGR+G LDEA
Sbjct: 307 IPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAY 366
Query: 308 ELIREL----PEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363
+ I +L +++ ++LGAC H N DLG E+A +L +EP+NP V+LSNIYA
Sbjct: 367 KFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYA 426
Query: 364 GLGRWEDVGRIRQMINDRQLTKLPGIS 390
G+ ++V IR + L K G S
Sbjct: 427 LSGKTDEVSHIRDGMMRNNLRKQVGYS 453
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 16/286 (5%)
Query: 111 PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKET 170
PD +NS+I S+L + + +M S+ + PS TSV+ +CADLSAL++GK
Sbjct: 70 PDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGV 129
Query: 171 HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNG 230
H H + + D + AL++ Y KCG AR+ FD+ K WN+++SG+ +NG
Sbjct: 130 HCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEK--SIVAWNSLVSGFEQNG 187
Query: 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHF 290
+ A+++F M++ +P+SA+FV++LSAC G V + + + GL +
Sbjct: 188 LADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE-GLDLNVKLG 246
Query: 291 GCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME-- 348
+++L R G + +ARE+ ++ E V+ + +++ A H G++ +ME
Sbjct: 247 TALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTH---GYGQQAVELFNKMEDD 303
Query: 349 ----PENPTPFVILSN-IYAGLGRWEDVGRIRQMINDRQLTKLPGI 389
P N T +LS +AGL E ++M +L +PG+
Sbjct: 304 CGPIPNNVTFVAVLSACAHAGLVE-EGRSVYKRMTKSYRL--IPGV 346
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 40/235 (17%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
EP+S TF+S++SACA + G VH + + +GTAL+++Y +CG + A
Sbjct: 205 EPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKARE 264
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKPDPATWNSMISGFSQL 126
VF ++K + N+ W MI+ +G ++A+ELF + + G P+ T+ +++S +
Sbjct: 265 VFDKMKET-NVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323
Query: 127 GMRFEAFKLFEKM-QSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESM 185
G+ E ++++M +S ++P G E H
Sbjct: 324 GLVEEGRSVYKRMTKSYRLIP--------------------GVEHH-------------- 349
Query: 186 ATALISMYMKCGQPSWARRFFDQFEI--KPDDPAFWNAMISGYGRNGEYESAVEI 238
++ M + G A +F Q + K PA W AM+ + Y+ VEI
Sbjct: 350 -VCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEI 403
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/386 (34%), Positives = 210/386 (54%), Gaps = 44/386 (11%)
Query: 10 NSVTFISVISACASLLYLQFGRQVHGLTLK--IEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+++T I ++ AC ++ + G+ VHG++++ QSD + +++DMY+KC L A
Sbjct: 209 DALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYL-QASIIDMYVKCRLLDNARK 267
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
+F E RN++ W T+ ISGF++
Sbjct: 268 LF-ETSVDRNVVMWTTL-----------------------------------ISGFAKCE 291
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
EAF LF +M ++P+ + ++L +C+ L +L+ GK HG++IR + D T
Sbjct: 292 RAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFT 351
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAF-WNAMISGYGRNGEYESAVEIFDLMQQEK 246
+ I MY +CG AR FD P+ W++MI+ +G NG +E A++ F M+ +
Sbjct: 352 SFIDMYARCGNIQMARTVFDMM---PERNVISWSSMINAFGINGLFEEALDCFHKMKSQN 408
Query: 247 VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306
V PNS +FV++LSAC H+G+V + + F M D+G+ P++EH+ CMVDLLGR+G + EA
Sbjct: 409 VVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEA 468
Query: 307 RELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365
+ I +P +P S + +LL AC H DL E+A KL MEPE + +V+LSNIYA
Sbjct: 469 KSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADA 528
Query: 366 GRWEDVGRIRQMINDRQLTKLPGISA 391
G WE V +R+ + + K G SA
Sbjct: 529 GMWEMVNCVRRKMGIKGYRKHVGQSA 554
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 166/382 (43%), Gaps = 60/382 (15%)
Query: 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAH 66
D +S + I AC L L+ G +HGL +K D + +LV+MY + G + A
Sbjct: 105 DGVDSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQ 164
Query: 67 NVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL 126
VF E+ RN + W ++ G + + DP
Sbjct: 165 KVFDEIP-VRNSVLWGVLMKGYL------------------KYSKDP------------- 192
Query: 127 GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRAD-LNKDESM 185
E F+LF M+ TG+ + ++ AC ++ A K+GK HG IR +++ + +
Sbjct: 193 ----EVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYL 248
Query: 186 ATALISMYMKCGQPSWARRFFDQFEIKPD-DPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
++I MY+KC AR+ FE D + W +ISG+ + E AVE FDL +Q
Sbjct: 249 QASIIDMYVKCRLLDNARKL---FETSVDRNVVMWTTLISGFAK---CERAVEAFDLFRQ 302
Query: 245 ---EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301
E + PN + A+L +C G + + M + G++ +F +D+ R G
Sbjct: 303 MLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRN-GIEMDAVNFTSFIDMYARCG 361
Query: 302 RLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEM----AMKLQEMEPENPTPFVI 357
+ AR + +PE V + S++ A +N E + MK Q + P + T +
Sbjct: 362 NIQMARTVFDMMPERNVISWSSMINA--FGINGLFEEALDCFHKMKSQNVVPNSVTFVSL 419
Query: 358 LS------NIYAGLGRWEDVGR 373
LS N+ G ++E + R
Sbjct: 420 LSACSHSGNVKEGWKQFESMTR 441
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 130/285 (45%), Gaps = 45/285 (15%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PN T +++ +C+SL L+ G+ VHG ++ + D + T+ +DMY +CG + A V
Sbjct: 310 PNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTV 369
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F ++ RN+++W++MI +NG E+A++ F + + P+ T+ S++S S G
Sbjct: 370 F-DMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGN 428
Query: 129 RFEAFKLFEKM-QSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
E +K FE M + G+VP +E
Sbjct: 429 VKEGWKQFESMTRDYGVVP-----------------------------------EEEHYA 453
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
++ + + G+ A+ F D +KP A W A++S + E + A EI + + +
Sbjct: 454 CMVDLLGRAGEIGEAKSFIDNMPVKPMASA-WGALLSACRIHKEVDLAGEIAEKLLS--M 510
Query: 248 KPNSASFVAVLSACGHAGHVDKAL-QIFTMMDDDFGLKPKQEHFG 291
+P +S +LS + D + ++ + G+K ++H G
Sbjct: 511 EPEKSSVYVLLSNI----YADAGMWEMVNCVRRKMGIKGYRKHVG 551
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 110/226 (48%), Gaps = 18/226 (7%)
Query: 109 FKPDPATWNSMISGFSQLGM--RFEAFKLFEKMQS-TGMVPSLKCVTSVLSACADLSALK 165
+K + +WN+++SG+S+ + L+ +M+ V S V ++ AC L L+
Sbjct: 68 WKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAI-KACVGLGLLE 126
Query: 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISG 225
G HG ++ L+KD+ +A +L+ MY + G A++ FD+ ++ + W ++ G
Sbjct: 127 NGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVR--NSVLWGVLMKG 184
Query: 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH--AGHVDKALQIFTM----MDD 279
Y + + +F LM+ + ++ + + ++ ACG+ AG V K + ++ +D
Sbjct: 185 YLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQ 244
Query: 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325
L+ ++D+ + LD AR+L + V ++ +L+
Sbjct: 245 SDYLQAS------IIDMYVKCRLLDNARKLFETSVDRNVVMWTTLI 284
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/169 (17%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 153 SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212
++L+ + L ++ H VI + + ++L + Y++ + +A F++
Sbjct: 9 ALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCW 68
Query: 213 PDDPAFWNAMISGYGRNGE--YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKA 270
+ WN ++SGY ++ Y + +++ M++ +S + V + AC G ++
Sbjct: 69 KRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128
Query: 271 LQIFTM-----MDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314
+ I + +D D + P +V++ + G ++ A+++ E+P
Sbjct: 129 ILIHGLAMKNGLDKDDYVAPS------LVEMYAQLGTMESAQKVFDEIP 171
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 5 LSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC 64
L +P++ TF V+ + + FGRQ+HG + S + T L+ MY CG L
Sbjct: 110 LCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGD 169
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
A +F E+ +++ WN ++AG G ++A L E + + + +W +ISG++
Sbjct: 170 ARKMFDEML-VKDVNVWNALLAGYGKVGEMDEARSLLEMMP--CWVRNEVSWTCVISGYA 226
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
+ G EA ++F++M + P + +VLSACADL +L+LG+ +V +N+ S
Sbjct: 227 KSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS 286
Query: 185 MATALISMYMKCGQPSWARRFFDQFE-IKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243
+ A+I MY K G + A D FE + + W +I+G +G A+ +F+ M
Sbjct: 287 LNNAVIDMYAKSGNITKA---LDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMV 343
Query: 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRL 303
+ V+PN +F+A+LSAC H G VD ++F M +G+ P EH+GCM+DLLGR+G+L
Sbjct: 344 KAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKL 403
Query: 304 DEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362
EA E+I+ +P + +++ SLL A H + +LGE +L ++EP N +++L+N+Y
Sbjct: 404 READEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLY 463
Query: 363 AGLGRWEDVGRIRQMINDRQLTKLPGISA 391
+ LGRW++ +R M+ + K+ G S+
Sbjct: 464 SNLGRWDESRMMRNMMKGIGVKKMAGESS 492
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 159/400 (39%), Gaps = 74/400 (18%)
Query: 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSD-TMIGTALVDMYLKCGCLPCAHNVFQELK 73
I+ +S + L + ++HG LK KQS MI T L
Sbjct: 5 INALSLSSGLNWFVTSLKIHGNNLKTLKQSHCYMIITGL--------------------- 43
Query: 74 GSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATW--NSMISGFSQL---GM 128
+R+ L I G A +F +P P T+ N+MI S L
Sbjct: 44 -NRDNLNVAKFIEACSNAGHLRYAYSVFT------HQPCPNTYLHNTMIRALSLLDEPNA 96
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
A ++ K+ + P VL +S + G++ HG V+ + + T
Sbjct: 97 HSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTG 156
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYE--------------- 233
LI MY CG AR+ FD+ +K D WNA+++GYG+ GE +
Sbjct: 157 LIQMYFSCGGLGDARKMFDEMLVK--DVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRN 214
Query: 234 ------------------SAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT 275
A+E+F M E V+P+ + +AVLSAC G ++ +I +
Sbjct: 215 EVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICS 274
Query: 276 MMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSD 335
+D G+ ++D+ +SG + +A ++ + E V + +++ H +
Sbjct: 275 YVDHR-GMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGA 333
Query: 336 LGEEMAMKLQE--MEPENPTPFVILSNIYAGLGRWEDVGR 373
M ++ + + P + T ILS + +G W D+G+
Sbjct: 334 EALAMFNRMVKAGVRPNDVTFIAILSAC-SHVG-WVDLGK 371
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 234 bits (598), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 206/387 (53%), Gaps = 39/387 (10%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
PN+VT S++S C L + G+ +HG ++ + SD +I T+L+ MY KC
Sbjct: 316 RPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCK------- 368
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
R + +F G + K W+++I+G Q
Sbjct: 369 -------------------------RVDLCFRVFSGAS----KYHTGPWSAIIAGCVQNE 399
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
+ +A LF++M+ + P++ + S+L A A L+ L+ H ++ + AT
Sbjct: 400 LVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAAT 459
Query: 188 ALISMYMKCGQPSWARRFFD--QFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245
L+ +Y KCG A + F+ Q + K D W A+ISGYG +G+ +A+++F M +
Sbjct: 460 GLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRS 519
Query: 246 KVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305
V PN +F + L+AC H+G V++ L +F M + + + H+ C+VDLLGR+GRLDE
Sbjct: 520 GVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDE 579
Query: 306 ARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364
A LI +P EPT +V+ +LL AC H N LGE A KL E+EPEN +V+L+NIYA
Sbjct: 580 AYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAA 639
Query: 365 LGRWEDVGRIRQMINDRQLTKLPGISA 391
LGRW+D+ ++R M+ + L K PG S
Sbjct: 640 LGRWKDMEKVRSMMENVGLRKKPGHST 666
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 38/260 (14%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ T+ V A L ++ G VHG L+ D + AL+ MY+ G + A +V
Sbjct: 115 PDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDV 174
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F +K D +WN+MISG+ + G
Sbjct: 175 FDVMKNR------------------------------------DVISWNTMISGYYRNGY 198
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
+A +F+ M + + + S+L C L L++G+ H V L + A
Sbjct: 199 MNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNA 258
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
L++MY+KCG+ AR FD+ E + D W MI+GY +G+ E+A+E+ LMQ E V+
Sbjct: 259 LVNMYLKCGRMDEARFVFDRMERR--DVITWTCMINGYTEDGDVENALELCRLMQFEGVR 316
Query: 249 PNSASFVAVLSACGHAGHVD 268
PN+ + +++S CG A V+
Sbjct: 317 PNAVTIASLVSVCGDALKVN 336
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 9/228 (3%)
Query: 82 NTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141
+T+ L G A +LFE + ++N +I + + G+ +A +F +M S
Sbjct: 53 STLSVTYALCGHITYARKLFEEMPQSSL----LSYNIVIRMYVREGLYHDAISVFIRMVS 108
Query: 142 TGM--VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199
G+ VP V A +L ++KLG HG ++R+ +D+ + AL++MYM G+
Sbjct: 109 EGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKV 168
Query: 200 SWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259
AR FD +K D WN MISGY RNG A+ +FD M E V + A+ V++L
Sbjct: 169 EMARDVFDV--MKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLP 226
Query: 260 ACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
CGH ++ + ++++ L K E +V++ + GR+DEAR
Sbjct: 227 VCGHLKDLEMGRNVHKLVEEK-RLGDKIEVKNALVNMYLKCGRMDEAR 273
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 137/322 (42%), Gaps = 39/322 (12%)
Query: 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCA 65
S + + T +S++ C L L+ GR VH L + + ALV+MYLKCG + A
Sbjct: 213 SVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEA 272
Query: 66 HNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125
VF ++ + D TW MI+G+++
Sbjct: 273 RFVFDRME------------------------------------RRDVITWTCMINGYTE 296
Query: 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESM 185
G A +L MQ G+ P+ + S++S C D + GK HG +R + D +
Sbjct: 297 DGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIII 356
Query: 186 ATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245
T+LISMY KC + R F P W+A+I+G +N A+ +F M++E
Sbjct: 357 ETSLISMYAKCKRVDLCFRVFSGASKYHTGP--WSAIIAGCVQNELVSDALGLFKRMRRE 414
Query: 246 KVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305
V+PN A+ ++L A + +A+ I + G + +V + + G L+
Sbjct: 415 DVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKT-GFMSSLDAATGLVHVYSKCGTLES 473
Query: 306 ARELIRELPEPTVSVYHSLLGA 327
A ++ + E S L GA
Sbjct: 474 AHKIFNGIQEKHKSKDVVLWGA 495
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 232 bits (591), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 226/452 (50%), Gaps = 74/452 (16%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PN T + + A L+ G+ VHG ++ +D ++ T ++D+Y K C+ A V
Sbjct: 203 PNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRV 262
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGL------------------------ 104
F +L +N +TW+ MI G + N ++A E+F +
Sbjct: 263 F-DLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARF 321
Query: 105 -------------AHEGFKPDPATWNSMISG-------------FSQLGMRF-------- 130
GF D N++IS FS++G++
Sbjct: 322 GDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLI 381
Query: 131 ----------EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
E+F+LF +M+++G+ P + + VL+AC+ L+AL G HG+ +
Sbjct: 382 TGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYA 441
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+ S+ AL+ MY KCG+ A+R FD + D WN M+ G+G +G + A+ +F+
Sbjct: 442 VNTSICNALMDMYTKCGKLDVAKRVFDTMHKR--DIVSWNTMLFGFGIHGLGKEALSLFN 499
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF-TMMDDDFGLKPKQEHFGCMVDLLGR 299
MQ+ V P+ + +A+LSAC H+G VD+ Q+F +M DF + P+ +H+ CM DLL R
Sbjct: 500 SMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLAR 559
Query: 300 SGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358
+G LDEA + + ++P EP + V +LL ACW + N++LG E++ K+Q + E V+L
Sbjct: 560 AGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSL-GETTESLVLL 618
Query: 359 SNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
SN Y+ RWED RIR + R L K PG S
Sbjct: 619 SNTYSAAERWEDAARIRMIQKKRGLLKTPGYS 650
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 110/255 (43%), Gaps = 40/255 (15%)
Query: 14 FISVISACASLLYLQFGRQVHGLTLKIE-KQSDTMIGTALVDMYLKCGCLPCAHNVFQEL 72
F+S++ C L G+ +H LK S + + L +Y C + A +VF E+
Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEI 61
Query: 73 KGSR-NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFE 131
R N + W+ MI N +EKA++L+ + + G +P T+
Sbjct: 62 PHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTY--------------- 106
Query: 132 AFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALIS 191
VL ACA L A+ GK H HV +D D + TAL+
Sbjct: 107 --------------------PFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVD 146
Query: 192 MYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIF-DLMQQEKVKPN 250
Y KCG+ A + FD E+ D WNAMISG+ + + +F D+ + + + PN
Sbjct: 147 FYAKCGELEMAIKVFD--EMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPN 204
Query: 251 SASFVAVLSACGHAG 265
++ V + A G AG
Sbjct: 205 LSTIVGMFPALGRAG 219
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 171/430 (39%), Gaps = 89/430 (20%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
P T+ V+ ACA L + G+ +H + +D + TALVD Y KCG L A
Sbjct: 100 RPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIK 159
Query: 68 VFQELKGSRNILTWN------------TMIAGMMLNGRS------------------EKA 97
VF E+ R+++ WN T + G+ L+ R +A
Sbjct: 160 VFDEMP-KRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRA 218
Query: 98 MELFEGLAHEG-------------------------------------FKPDPATWNSMI 120
L EG A G FK + TW++MI
Sbjct: 219 GALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMI 278
Query: 121 SGFSQLGMRFEAFKLFEKM---QSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177
G+ + M EA ++F +M + MV + + +L CA L G+ H + ++A
Sbjct: 279 GGYVENEMIKEAGEVFFQMLVNDNVAMVTPVA-IGLILMGCARFGDLSGGRCVHCYAVKA 337
Query: 178 DLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVE 237
D ++ +IS Y K G A R F + +K D +N++I+G N E +
Sbjct: 338 GFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLK--DVISYNSLITGCVVNCRPEESFR 395
Query: 238 IFDLMQQEKVKPNSASFVAVLSACGH---AGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294
+F M+ ++P+ + + VL+AC H GH + G ++
Sbjct: 396 LFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVV----HGYAVNTSICNALM 451
Query: 295 DLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEM-----AMKLQEMEP 349
D+ + G+LD A+ + + + + ++++L H LG+E +M+ + P
Sbjct: 452 DMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIH---GLGKEALSLFNSMQETGVNP 508
Query: 350 ENPTPFVILS 359
+ T ILS
Sbjct: 509 DEVTLLAILS 518
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
P+ T + V++AC+ L L G HG + +T I AL+DMY KCG L A
Sbjct: 406 RPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKR 465
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF + R+I++WNTM+ G ++G ++A+ LF + G PD T +++S S G
Sbjct: 466 VFDTMH-KRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSG 524
Query: 128 MRFEAFKLFEKMQ--STGMVPSL---KCVTSVLS 156
+ E +LF M ++P + C+T +L+
Sbjct: 525 LVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLA 558
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 13/221 (5%)
Query: 153 SVLSACADLSALKLGKETHGHVIRADLNKDESMATA-LISMYMKCGQPSWARRFFDQFEI 211
S+L C L LG+ H H+++ L S L +Y C + AR FD+
Sbjct: 4 SLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPH 63
Query: 212 KPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKAL 271
+P W+ MI Y N E A++++ M V+P ++ VL AC +D
Sbjct: 64 PRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGK 123
Query: 272 QIFTMMD-DDFGLKPKQEHFGC--MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLG-- 326
I + ++ DF + + C +VD + G L+ A ++ E+P+ + +++++
Sbjct: 124 LIHSHVNCSDFA----TDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGF 179
Query: 327 ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
+ C L +G + + ++ ++ +P I+ ++ LGR
Sbjct: 180 SLHCCLTDVIG--LFLDMRRIDGLSPNLSTIVG-MFPALGR 217
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 232 bits (591), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/390 (34%), Positives = 209/390 (53%), Gaps = 47/390 (12%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQ---SDTMIGTALVDMYLKCGCLPC 64
P+ T ++V+SACA ++ GRQVH L I+ S+ I AL+D+Y KCG L
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVH---LWIDDHGFGSNLKIVNALIDLYSKCGEL-- 317
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
E A LFE L ++ D +WN++I G++
Sbjct: 318 ------------------------------ETACGLFERLPYK----DVISWNTLIGGYT 343
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIR--ADLNKD 182
+ + EA LF++M +G P+ + S+L ACA L A+ +G+ H ++ + +
Sbjct: 344 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNA 403
Query: 183 ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242
S+ T+LI MY KCG A + F+ I + WNAMI G+ +G +++ ++F M
Sbjct: 404 SSLRTSLIDMYAKCGDIEAAHQVFNS--ILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461
Query: 243 QQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302
++ ++P+ +FV +LSAC H+G +D IF M D+ + PK EH+GCM+DLLG SG
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGL 521
Query: 303 LD-EARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361
+ EP ++ SLL AC H N +LGE A L ++EPENP +V+LSNI
Sbjct: 522 FKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNI 581
Query: 362 YAGLGRWEDVGRIRQMINDRQLTKLPGISA 391
YA GRW +V + R ++ND+ + K+PG S+
Sbjct: 582 YASAGRWNEVAKTRALLNDKGMKKVPGCSS 611
Score = 165 bits (417), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 196/382 (51%), Gaps = 16/382 (4%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
PNS TF V+ +CA + G+Q+HG LK+ D + T+L+ MY++ G L AH V
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + R+++++ +I G G E A +LF+ + + D +WN+MISG+++ G
Sbjct: 192 FDK-SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSWNAMISGYAETGN 246
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA +LF+ M T + P + +V+SACA +++LG++ H + + + A
Sbjct: 247 YKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNA 306
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI +Y KCG+ A F++ K D WN +I GY Y+ A+ +F M +
Sbjct: 307 LIDLYSKCGELETACGLFERLPYK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDF-GLKPKQEHFGCMVDLLGRSGRLDEAR 307
PN + +++L AC H G +D I +D G+ ++D+ + G ++ A
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 308 ELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQE--MEPENPTPFVILSNI-YAG 364
++ + ++S +++++ H +D ++ ++++ ++P++ T +LS ++G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484
Query: 365 LGRWEDVGR--IRQMINDRQLT 384
+ D+GR R M D ++T
Sbjct: 485 M---LDLGRHIFRTMTQDYKMT 503
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/413 (27%), Positives = 183/413 (44%), Gaps = 80/413 (19%)
Query: 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYL---KCGCLPCAHNVFQE 71
+S++ C +L Q R +H +KI + + L++ + LP A +VF+
Sbjct: 37 LSLLHNCKTL---QSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKT 93
Query: 72 LKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFE 131
++ N+L WNTM G L+ DP +
Sbjct: 94 IQ-EPNLLIWNTMFRGHALSS-------------------DPVS---------------- 117
Query: 132 AFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALIS 191
A KL+ M S G++P+ VL +CA A K G++ HGHV++ + D + T+LIS
Sbjct: 118 ALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLIS 177
Query: 192 MYMKCGQPSWARRFFDQF-----------------------------EIKPDDPAFWNAM 222
MY++ G+ A + FD+ EI D WNAM
Sbjct: 178 MYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAM 237
Query: 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFG 282
ISGY G Y+ A+E+F M + V+P+ ++ V V+SAC +G ++ Q+ +DD G
Sbjct: 238 ISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDH-G 296
Query: 283 LKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAM 342
+ ++DL + G L+ A L LP V +++L+G + H+N L +E +
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG-YTHMN--LYKEALL 353
Query: 343 KLQEM--EPENPTPFVILSNI--YAGLGRWEDVGRIRQMINDRQLTKLPGISA 391
QEM E P +LS + A LG D+GR + D++L + S+
Sbjct: 354 LFQEMLRSGETPNDVTMLSILPACAHLGAI-DIGRWIHVYIDKRLKGVTNASS 405
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 144/322 (44%), Gaps = 34/322 (10%)
Query: 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEK--QSDTMIGTALVDMYLKCGCLPC 64
+ PN VT +S++ ACA L + GR +H K K + + + T+L+DMY KCG +
Sbjct: 363 ETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEA 422
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
AH VF + +++ +WN MI G ++GR++ + +LF + G +PD T+ ++S S
Sbjct: 423 AHQVFNSIL-HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481
Query: 125 QLGMRFEAFKLFEKM-QSTGMVPSLK---CVTSVLSACADLSALKLGKETHGHVIRADLN 180
GM +F M Q M P L+ C+ +L L KE + ++
Sbjct: 482 HSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG------LFKEAEEMINMMEME 535
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIF 239
D + +L+ G F + +I+P++P + + + Y G + +
Sbjct: 536 PDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTR 595
Query: 240 DLMQQEKVK--PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD-- 295
L+ + +K P +S +D + F + D P+ M++
Sbjct: 596 ALLNDKGMKKVPGCSSI-----------EIDSVVHEFIIGDK---FHPRNREIYGMLEEM 641
Query: 296 --LLGRSGRLDEARELIRELPE 315
LL ++G + + E+++E+ E
Sbjct: 642 EVLLEKAGFVPDTSEVLQEMEE 663
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 231 bits (590), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 217/394 (55%), Gaps = 16/394 (4%)
Query: 3 ECLSDE--PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
+ LS E PN TF S++ +C++ + G+ +H LK D + T LVD+Y K G
Sbjct: 120 QLLSSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGG 175
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
+ A VF + R++++ MI G E A LF+ + D +WN MI
Sbjct: 176 DVVSAQKVFDRMP-ERSLVSSTAMITCYAKQGNVEAARALFDSMCER----DIVSWNVMI 230
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGM-VPSLKCVTSVLSACADLSALKLGKETHGHVIRADL 179
G++Q G +A LF+K+ + G P V + LSAC+ + AL+ G+ H V + +
Sbjct: 231 DGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRI 290
Query: 180 NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIF 239
+ + T LI MY KCG A F+ K D WNAMI+GY +G + A+ +F
Sbjct: 291 RLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRK--DIVAWNAMIAGYAMHGYSQDALRLF 348
Query: 240 DLMQQ-EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298
+ MQ ++P +F+ L AC HAG V++ ++IF M ++G+KPK EH+GC+V LLG
Sbjct: 349 NEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLG 408
Query: 299 RSGRLDEARELIRELPEPTVSV-YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357
R+G+L A E I+ + SV + S+LG+C H + LG+E+A L + +N +V+
Sbjct: 409 RAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVL 468
Query: 358 LSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISA 391
LSNIYA +G +E V ++R ++ ++ + K PGIS
Sbjct: 469 LSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 502
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 131/303 (43%), Gaps = 39/303 (12%)
Query: 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKC 150
+G+ ++ LF H+ PD + + I+ S G++ +AF L+ ++ S+ + P+
Sbjct: 77 HGKIRHSLALF----HQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 151 VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFE 210
+S+L +C+ K GK H HV++ L D +AT L+ +Y K G A++ FD+
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 211 IKP-----------------------------DDPAFWNAMISGYGRNGEYESAVEIFD- 240
+ D WN MI GY ++G A+ +F
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
L+ + K KP+ + VA LSAC G ++ I + ++ + ++D+ +
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSS-RIRLNVKVCTGLIDMYSKC 307
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
G L+EA + + P + +++++ H S + ++Q + PT +
Sbjct: 308 GSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367
Query: 361 IYA 363
+ A
Sbjct: 368 LQA 370
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 231 bits (589), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 137/396 (34%), Positives = 225/396 (56%), Gaps = 21/396 (5%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQ-----SDTMIGTALVDMYLKCGCL 62
EP+ T +S++ C L ++ G+ VHG IE++ S+ ++ AL+DMY KC
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGW---IERRGPVYSSNLILSNALLDMYFKCKES 285
Query: 63 PCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122
A F +K +++ +WNTM+ G + G E A +F+ + K D +WNS++ G
Sbjct: 286 GLAKRAFDAMK-KKDMRSWNTMVVGFVRLGDMEAAQAVFDQMP----KRDLVSWNSLLFG 340
Query: 123 FSQLGMRFEAFK-LFEKMQSTGMV-PSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
+S+ G + LF +M V P + S++S A+ L G+ HG VIR L
Sbjct: 341 YSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLK 400
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPD-DPAFWNAMISGYGRNGEYESAVEIF 239
D +++ALI MY KCG R F F+ + D A W +MI+G +G + A+++F
Sbjct: 401 GDAFLSSALIDMYCKCGI---IERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLF 457
Query: 240 DLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR 299
MQ+E V PN+ + +AVL+AC H+G V++ L +F M D FG P+ EH+G +VDLL R
Sbjct: 458 GRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCR 517
Query: 300 SGRLDEARELI-RELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357
+GR++EA++++ +++P P+ S++ S+L AC + + E +L ++EPE +V+
Sbjct: 518 AGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVL 577
Query: 358 LSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAGI 393
LSNIYA +GRW + R+ + +R + K G S+ +
Sbjct: 578 LSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVV 613
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 147/318 (46%), Gaps = 48/318 (15%)
Query: 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQ 140
WN+++ M G A ++F + H PD +++N MI G+++ G EA KL+ KM
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPH----PDVSSFNVMIVGYAKQGFSLEALKLYFKMV 224
Query: 141 STGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRAD--LNKDESMATALISMYMKCGQ 198
S G+ P V S+L C LS ++LGK HG + R + + ++ AL+ MY KC +
Sbjct: 225 SDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKE 284
Query: 199 PSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ-------------- 244
A+R FD +K D WN M+ G+ R G+ E+A +FD M +
Sbjct: 285 SGLAKRAFDA--MKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYS 342
Query: 245 -------------------EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP 285
EKVKP+ + V+++S + G + + ++ L+
Sbjct: 343 KKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLV---IRLQL 399
Query: 286 KQEHF--GCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMK 343
K + F ++D+ + G ++ A + + E V+++ S++ H N ++ +
Sbjct: 400 KGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGR 459
Query: 344 LQE--MEPENPTPFVILS 359
+QE + P N T +L+
Sbjct: 460 MQEEGVTPNNVTLLAVLT 477
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 109 FKPDPAT--WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL 166
F P+P +N+MIS S + E F L+ M + P + ++ A + LS +K
Sbjct: 94 FTPNPNVFVYNTMISAVSS--SKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVK- 150
Query: 167 GKETHGHVIRAD-LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISG 225
+ H H+I + L+ + +L+ YM+ G A + F + PD +F N MI G
Sbjct: 151 --QIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMP-HPDVSSF-NVMIVG 206
Query: 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHV 267
Y + G A++++ M + ++P+ + +++L CGH +
Sbjct: 207 YAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDI 248
>sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containing protein At1g03510
OS=Arabidopsis thaliana GN=PCMP-E3 PE=3 SV=1
Length = 429
Score = 231 bits (588), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 212/381 (55%), Gaps = 10/381 (2%)
Query: 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQEL 72
F + +CA+ G VH ++K S+ +G AL+DMY KC + A +F E+
Sbjct: 50 VFSLALKSCAAAFRPVLGGSVHAHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEI 109
Query: 73 KGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF--SQLGMRF 130
RN + WN MI+ G+ ++A+EL+E + P+ +++N++I G ++ G +
Sbjct: 110 P-QRNAVVWNAMISHYTHCGKVKEAVELYEAM---DVMPNESSFNAIIKGLVGTEDG-SY 164
Query: 131 EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALI 190
A + + KM P+L + +++SAC+ + A +L KE H + R + + + L+
Sbjct: 165 RAIEFYRKMIEFRFKPNLITLLALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLV 224
Query: 191 SMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN 250
Y +CG + + FD E + D W+++IS Y +G+ ESA++ F M+ KV P+
Sbjct: 225 EAYGRCGSIVYVQLVFDSMEDR--DVVAWSSLISAYALHGDAESALKTFQEMELAKVTPD 282
Query: 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310
+F+ VL AC HAG D+AL F M D+GL+ ++H+ C+VD+L R GR +EA ++I
Sbjct: 283 DIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKDHYSCLVDVLSRVGRFEEAYKVI 342
Query: 311 RELPE-PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369
+ +PE PT + +LLGAC + +L E A +L +EPENP +V+L IY +GR E
Sbjct: 343 QAMPEKPTAKTWGALLGACRNYGEIELAEIAARELLMVEPENPANYVLLGKIYMSVGRQE 402
Query: 370 DVGRIRQMINDRQLTKLPGIS 390
+ R+R + + + PG S
Sbjct: 403 EAERLRLKMKESGVKVSPGSS 423
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+PN +T ++++SAC+++ + +++H + + + + LV+ Y +CG +
Sbjct: 179 KPNLITLLALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQL 238
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF ++ R+++ W+++I+ L+G +E A++ F+ + PD + +++ S G
Sbjct: 239 VFDSME-DRDVVAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAG 297
Query: 128 MRFEAFKLFEKMQ-STGMVPS---LKCVTSVLS 156
+ EA F++MQ G+ S C+ VLS
Sbjct: 298 LADEALVYFKRMQGDYGLRASKDHYSCLVDVLS 330
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 231 bits (588), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 226/416 (54%), Gaps = 40/416 (9%)
Query: 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQ- 70
VT +++SA A L+ G++V ++ +SD ++ + ++DMY KCG + A VF
Sbjct: 376 VTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDS 435
Query: 71 --------------------------------ELKG-SRNILTWNTMIAGMMLNGRSEKA 97
+L+G N++TWN +I ++ NG+ ++A
Sbjct: 436 TVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEA 495
Query: 98 MELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSA 157
++F + G P+ +W +M++G Q G EA KMQ +G+ P+ +T LSA
Sbjct: 496 KDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSA 555
Query: 158 CADLSALKLGKETHGHVIRADLNKDE--SMATALISMYMKCGQPSWARRFFDQFEIKPDD 215
CA L++L +G+ HG++IR +L S+ T+L+ MY KCG + A + F ++ +
Sbjct: 556 CAHLASLHIGRTIHGYIIR-NLQHSSLVSIETSLVDMYAKCGDINKAEKVFGS-KLYSEL 613
Query: 216 PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT 275
P NAMIS Y G + A+ ++ ++ +KP++ + VLSAC HAG +++A++IFT
Sbjct: 614 P-LSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFT 672
Query: 276 MMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNS 334
+ +KP EH+G MVDLL +G ++A LI E+P +P + SL+ +C +
Sbjct: 673 DIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKT 732
Query: 335 DLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
+L + ++ KL E EPEN +V +SN YA G W++V ++R+M+ + L K PG S
Sbjct: 733 ELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCS 788
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 167/369 (45%), Gaps = 60/369 (16%)
Query: 3 ECLSDE--PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
E L +E P++ +V AC +L + +FGR VHG +K + + ++L DMY KCG
Sbjct: 163 EMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCG 222
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD--PATWNS 118
L A VF E+ PD WN+
Sbjct: 223 VLDDASKVFDEI--------------------------------------PDRNAVAWNA 244
Query: 119 MISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRAD 178
++ G+ Q G EA +LF M+ G+ P+ V++ LSA A++ ++ GK++H I
Sbjct: 245 LMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNG 304
Query: 179 LNKDESMATALISMYMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVE 237
+ D + T+L++ Y K G +A FD+ FE D WN +ISGY + G E A+
Sbjct: 305 MELDNILGTSLLNFYCKVGLIEYAEMVFDRMFE---KDVVTWNLIISGYVQQGLVEDAIY 361
Query: 238 IFDLMQQEKVKPNSASFVAVLSACGHAGHVD--KALQIFTM---MDDDFGLKPKQEHFGC 292
+ LM+ EK+K + + ++SA ++ K +Q + + + D L
Sbjct: 362 MCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLAST------ 415
Query: 293 MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352
++D+ + G + +A+++ E + ++++LL A + S L E M+ E
Sbjct: 416 VMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAA---YAESGLSGEALRLFYGMQLEGV 472
Query: 353 TPFVILSNI 361
P VI N+
Sbjct: 473 PPNVITWNL 481
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 44/331 (13%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
EP VT + +SA A++ ++ G+Q H + + + D ++GT+L++ Y K G + A
Sbjct: 271 EPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEM 330
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF + F+ D TWN +ISG+ Q G
Sbjct: 331 VFDRM------------------------------------FEKDVVTWNLIISGYVQQG 354
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
+ +A + + M+ + + +++SA A LKLGKE + IR D +A+
Sbjct: 355 LVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLAS 414
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
++ MY KCG A++ FD K D WN +++ Y +G A+ +F MQ E V
Sbjct: 415 TVMDMYAKCGSIVDAKKVFDSTVEK--DLILWNTLLAAYAESGLSGEALRLFYGMQLEGV 472
Query: 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAR 307
PN ++ ++ + G VD+A +F M G+ P + M++ + ++G +EA
Sbjct: 473 PPNVITWNLIILSLLRNGQVDEAKDMFLQMQSS-GIIPNLISWTTMMNGMVQNGCSEEAI 531
Query: 308 ELIRELPE----PTVSVYHSLLGACWCHLNS 334
+R++ E P L AC HL S
Sbjct: 532 LFLRKMQESGLRPNAFSITVALSAC-AHLAS 561
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 124/288 (43%), Gaps = 45/288 (15%)
Query: 17 VISACASLLYLQFGRQVHGLTLKIEK--QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG 74
++ C L G+Q+H LK + I T LV Y KC L A +F +L+
Sbjct: 76 ILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLR- 134
Query: 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFK 134
RN+ +W +I G K ++G+ A
Sbjct: 135 VRNVFSWAAII----------------------GVK-------------CRIGLCEGALM 159
Query: 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194
F +M + P V +V AC L + G+ HG+V+++ L +A++L MY
Sbjct: 160 GFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYG 219
Query: 195 KCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254
KCG A + FD EI + WNA++ GY +NG+ E A+ +F M+++ V+P +
Sbjct: 220 KCGVLDDASKVFD--EIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTV 277
Query: 255 VAVLSACGHAGHVDK-----ALQIFTMMDDDFGLKPKQEHFGCMVDLL 297
LSA + G V++ A+ I M+ D L +F C V L+
Sbjct: 278 STCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLI 325
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 118/283 (41%), Gaps = 47/283 (16%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLK-IEKQSDTMIGTALVDMYLKCGCLPCAHN 67
PN+ + +SACA L L GR +HG ++ ++ S I T+LVDMY KCG + A
Sbjct: 544 PNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEK 603
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
VF S L+ N MI+ L G ++A+ L+ L G KPD T +++S + G
Sbjct: 604 VFGSKLYSELPLS-NAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAG 662
Query: 128 MRFEAFKLFEKMQST-GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMA 186
+A ++F + S M P L E +G
Sbjct: 663 DINQAIEIFTDIVSKRSMKPCL--------------------EHYG-------------- 688
Query: 187 TALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ-- 244
++ + G+ A R ++ KPD MI + + E+ D + +
Sbjct: 689 -LMVDLLASAGETEKALRLIEEMPFKPDA-----RMIQSLVASCNKQRKTELVDYLSRKL 742
Query: 245 -EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK 286
E NS ++V + +A G D+ +++ MM GLK K
Sbjct: 743 LESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAK-GLKKK 784
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 105/262 (40%), Gaps = 17/262 (6%)
Query: 107 EGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL 166
+ P ++ +S + G EA L +M + + +L C L
Sbjct: 29 QAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLST 88
Query: 167 GKETHGHVIRAD--LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMIS 224
GK+ H +++ ++E + T L+ Y KC A F + ++ + W A+I
Sbjct: 89 GKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVR--NVFSWAAIIG 146
Query: 225 GYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA--GHVDKALQIFTMMDDDFG 282
R G E A+ F M + ++ P++ V ACG + + + + G
Sbjct: 147 VKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKS---G 203
Query: 283 LKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMA- 341
L+ + D+ G+ G LD+A ++ E+P+ +++L+ ++ + EE
Sbjct: 204 LEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVG---YVQNGKNEEAIR 260
Query: 342 ----MKLQEMEPENPTPFVILS 359
M+ Q +EP T LS
Sbjct: 261 LFSDMRKQGVEPTRVTVSTCLS 282
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 214/388 (55%), Gaps = 45/388 (11%)
Query: 8 EPNSVTFISVISACA----SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLP 63
E + T+ V+ AC ++ +L G+++H + S I T LVDMY + GC+
Sbjct: 175 ESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVD 234
Query: 64 CAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123
A VF + RN+++W+ +MI+ +
Sbjct: 235 YASYVFGGMP-VRNVVSWS-----------------------------------AMIACY 258
Query: 124 SQLGMRFEAFKLFEKM--QSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK 181
++ G FEA + F +M ++ P+ + SVL ACA L+AL+ GK HG+++R L+
Sbjct: 259 AKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDS 318
Query: 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241
+ +AL++MY +CG+ +R FD+ + D WN++IS YG +G + A++IF+
Sbjct: 319 ILPVISALVTMYGRCGKLEVGQRVFDRMHDR--DVVSWNSLISSYGVHGYGKKAIQIFEE 376
Query: 242 MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301
M P +FV+VL AC H G V++ ++F M D G+KP+ EH+ CMVDLLGR+
Sbjct: 377 MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRAN 436
Query: 302 RLDEARELIREL-PEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
RLDEA ++++++ EP V+ SLLG+C H N +L E + +L +EP+N +V+L++
Sbjct: 437 RLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLAD 496
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPG 388
IYA W++V R+++++ R L KLPG
Sbjct: 497 IYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M+E PNSVT +SV+ ACASL L+ G+ +HG L+ S + +ALV MY +CG
Sbjct: 275 MRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCG 334
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
L VF + R++++WN++I+ ++G +KA+++FE + G P P T+ S++
Sbjct: 335 KLEVGQRVFDRMH-DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVL 393
Query: 121 SGFSQLGMRFEAFKLFEKM-QSTGMVPSLK 149
S G+ E +LFE M + G+ P ++
Sbjct: 394 GACSHEGLVEEGKRLFETMWRDHGIKPQIE 423
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 142/359 (39%), Gaps = 50/359 (13%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ T+ +I C L +VH L D + T L+ MY G + A V
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + + R I WN + + L G E+ + L+ + G + D T+
Sbjct: 135 FDKTR-KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTY------------ 181
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACA----DLSALKLGKETHGHVIRADLNKDES 184
T VL AC ++ L GKE H H+ R +
Sbjct: 182 -----------------------TYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVY 218
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
+ T L+ MY + G +A F ++ + W+AMI+ Y +NG+ A+ F M +
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFGGMPVR--NVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 245 EK--VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302
E PNS + V+VL AC +++ I + GL +V + GR G+
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMYGRCGK 335
Query: 303 LDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM--EPENPTPFVILS 359
L+ + + + + V ++SL+ + H G++ +EM +PTP +S
Sbjct: 336 LEVGQRVFDRMHDRDVVSWNSLISSYGVH---GYGKKAIQIFEEMLANGASPTPVTFVS 391
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 114/289 (39%), Gaps = 21/289 (7%)
Query: 117 NSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIR 176
N +I + G +A ++ + S PS + ++ C S+L H H++
Sbjct: 50 NQLIQSLCKEGKLKQAIRVLSQESS----PSQQTYELLILCCGHRSSLSDALRVHRHILD 105
Query: 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAV 236
++D +AT LI MY G +AR+ FD+ + WNA+ G E +
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDK--TRKRTIYVWNALFRALTLAGHGEEVL 163
Query: 237 EIFDLMQQEKVKPNSASFVAVLSACGHA----GHVDKALQIFTMMDDDFGLKPKQEHFGC 292
++ M + V+ + ++ VL AC + H+ K +I + G
Sbjct: 164 GLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR-GYSSHVYIMTT 222
Query: 293 MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE-- 350
+VD+ R G +D A + +P V + +++ C+ + E +EM E
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIA---CYAKNGKAFEALRTFREMMRETK 279
Query: 351 ----NPTPFVILSNIYAGLGRWEDVGRIRQMINDRQL-TKLPGISAGIT 394
N V + A L E I I R L + LP ISA +T
Sbjct: 280 DSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVT 328
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,039,107
Number of Sequences: 539616
Number of extensions: 5939488
Number of successful extensions: 20755
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 12878
Number of HSP's gapped (non-prelim): 2618
length of query: 394
length of database: 191,569,459
effective HSP length: 119
effective length of query: 275
effective length of database: 127,355,155
effective search space: 35022667625
effective search space used: 35022667625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)