Query 016128
Match_columns 394
No_of_seqs 615 out of 1732
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 04:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.7E-64 5.9E-69 472.4 40.8 385 6-393 118-569 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 7.9E-62 1.7E-66 466.1 40.0 388 1-393 279-732 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.4E-60 3.1E-65 450.6 44.7 379 8-387 434-847 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-60 2.3E-65 451.5 42.9 381 1-387 396-789 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 3.3E-58 7.2E-63 441.2 38.3 380 1-387 178-625 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-56 3.3E-61 420.2 37.9 375 7-388 83-463 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-28 9.8E-33 237.5 43.0 364 10-382 498-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-27 4.2E-32 233.1 43.3 364 8-380 462-831 (899)
9 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-22 2.3E-27 189.2 41.2 362 14-381 130-571 (615)
10 PRK11788 tetratricopeptide rep 99.9 2.1E-23 4.5E-28 184.5 33.3 290 53-346 42-346 (389)
11 PRK15174 Vi polysaccharide exp 99.9 8.4E-23 1.8E-27 189.3 38.6 332 14-352 45-386 (656)
12 PRK11788 tetratricopeptide rep 99.9 1.3E-23 2.9E-28 185.7 31.8 300 85-389 42-355 (389)
13 KOG4626 O-linked N-acetylgluco 99.9 3.8E-23 8.3E-28 176.6 26.5 360 10-379 115-483 (966)
14 PRK11447 cellulose synthase su 99.9 2E-21 4.3E-26 192.1 40.8 354 18-381 276-700 (1157)
15 PRK15174 Vi polysaccharide exp 99.9 2.9E-21 6.4E-26 179.1 36.8 328 48-382 44-382 (656)
16 PRK11447 cellulose synthase su 99.9 1.8E-20 3.8E-25 185.4 44.0 369 7-385 298-745 (1157)
17 KOG4626 O-linked N-acetylgluco 99.9 1.3E-21 2.9E-26 167.3 27.9 351 10-370 149-508 (966)
18 PRK10049 pgaA outer membrane p 99.9 8.2E-20 1.8E-24 173.1 41.6 367 11-381 15-456 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-19 3.1E-24 168.4 38.4 331 48-382 129-538 (615)
20 PRK09782 bacteriophage N4 rece 99.9 2E-18 4.3E-23 164.2 41.2 366 7-382 177-707 (987)
21 PRK10049 pgaA outer membrane p 99.9 1.9E-18 4E-23 163.9 39.9 341 10-356 48-465 (765)
22 PRK14574 hmsH outer membrane p 99.9 1.5E-17 3.3E-22 155.1 41.3 354 21-381 44-479 (822)
23 PRK14574 hmsH outer membrane p 99.8 1.4E-16 3E-21 148.8 39.2 370 7-381 63-513 (822)
24 PRK09782 bacteriophage N4 rece 99.8 1.5E-16 3.3E-21 151.6 38.3 351 24-384 355-743 (987)
25 KOG2076 RNA polymerase III tra 99.8 5.2E-16 1.1E-20 138.9 32.7 331 57-391 150-522 (895)
26 PF13429 TPR_15: Tetratricopep 99.8 2.8E-19 6.1E-24 150.1 10.3 259 118-380 13-276 (280)
27 KOG4422 Uncharacterized conser 99.8 2.6E-15 5.7E-20 123.7 32.4 173 22-200 126-329 (625)
28 KOG4422 Uncharacterized conser 99.8 1.8E-15 4E-20 124.6 30.9 339 43-386 204-595 (625)
29 PRK10747 putative protoheme IX 99.8 1.3E-14 2.7E-19 127.5 36.1 280 59-347 97-390 (398)
30 KOG0495 HAT repeat protein [RN 99.8 2.9E-14 6.4E-19 123.6 36.8 370 12-392 517-889 (913)
31 KOG2002 TPR-containing nuclear 99.8 2.3E-15 5E-20 135.8 31.3 364 14-381 310-745 (1018)
32 KOG1915 Cell cycle control pro 99.8 2.4E-14 5.3E-19 119.6 33.6 358 23-388 85-507 (677)
33 KOG2003 TPR repeat-containing 99.8 1.8E-15 3.8E-20 125.8 26.3 343 21-367 247-709 (840)
34 KOG2002 TPR-containing nuclear 99.8 7.1E-15 1.5E-19 132.7 30.5 355 6-365 335-763 (1018)
35 PRK10747 putative protoheme IX 99.8 1.4E-14 3E-19 127.3 32.1 281 24-314 97-388 (398)
36 PF13429 TPR_15: Tetratricopep 99.7 1.5E-17 3.2E-22 139.8 11.9 255 18-277 15-274 (280)
37 TIGR00540 hemY_coli hemY prote 99.7 7.5E-14 1.6E-18 123.3 35.2 285 57-346 95-398 (409)
38 KOG0495 HAT repeat protein [RN 99.7 4.6E-13 9.9E-18 116.4 37.9 367 18-393 413-792 (913)
39 KOG0547 Translocase of outer m 99.7 4.1E-15 9E-20 124.5 24.2 360 14-380 118-565 (606)
40 TIGR00540 hemY_coli hemY prote 99.7 3.2E-14 6.9E-19 125.7 31.5 286 23-314 96-397 (409)
41 KOG1155 Anaphase-promoting com 99.7 8.2E-14 1.8E-18 116.1 30.5 288 87-381 236-536 (559)
42 KOG2076 RNA polymerase III tra 99.7 2.8E-13 6E-18 121.8 35.0 368 9-380 137-554 (895)
43 KOG1155 Anaphase-promoting com 99.7 1.3E-13 2.9E-18 114.9 30.5 326 43-380 161-494 (559)
44 KOG1126 DNA-binding cell divis 99.7 1.3E-14 2.8E-19 126.1 22.8 194 182-379 420-618 (638)
45 KOG1173 Anaphase-promoting com 99.7 1.1E-12 2.4E-17 112.2 32.5 251 125-380 256-517 (611)
46 COG3071 HemY Uncharacterized e 99.7 1E-12 2.2E-17 107.9 30.8 282 59-347 97-390 (400)
47 COG2956 Predicted N-acetylgluc 99.7 4.1E-13 8.9E-18 107.0 27.5 284 59-346 48-346 (389)
48 KOG1126 DNA-binding cell divis 99.7 1.7E-14 3.6E-19 125.5 21.3 285 60-353 333-626 (638)
49 COG2956 Predicted N-acetylgluc 99.7 4.6E-13 1E-17 106.8 26.3 293 91-388 48-354 (389)
50 KOG2003 TPR repeat-containing 99.7 3.5E-13 7.6E-18 112.4 25.9 365 8-380 198-688 (840)
51 COG3071 HemY Uncharacterized e 99.6 2.2E-12 4.8E-17 106.0 28.9 288 91-387 97-396 (400)
52 TIGR02521 type_IV_pilW type IV 99.6 3.7E-13 8E-18 110.3 21.5 198 182-380 30-231 (234)
53 KOG1915 Cell cycle control pro 99.6 7.8E-11 1.7E-15 99.1 34.7 352 21-381 117-536 (677)
54 PRK12370 invasion protein regu 99.6 7.9E-12 1.7E-16 114.8 29.6 263 43-315 253-534 (553)
55 PF12569 NARP1: NMDA receptor- 99.6 1.3E-10 2.9E-15 103.4 35.0 290 17-314 10-332 (517)
56 KOG1129 TPR repeat-containing 99.6 2.2E-13 4.8E-18 108.7 15.1 226 151-381 226-458 (478)
57 PRK12370 invasion protein regu 99.6 4.4E-12 9.6E-17 116.4 25.8 263 112-382 255-536 (553)
58 KOG1174 Anaphase-promoting com 99.6 3.5E-11 7.6E-16 99.3 27.8 309 45-361 193-514 (564)
59 KOG4162 Predicted calmodulin-b 99.6 3.2E-10 6.8E-15 100.9 35.7 369 8-381 320-783 (799)
60 KOG4318 Bicoid mRNA stability 99.6 1.6E-12 3.5E-17 116.7 21.7 334 2-365 17-392 (1088)
61 KOG0547 Translocase of outer m 99.5 5.9E-11 1.3E-15 100.1 28.5 327 50-382 119-533 (606)
62 KOG1840 Kinesin light chain [C 99.5 2.4E-11 5.3E-16 106.8 26.1 96 113-208 199-308 (508)
63 TIGR02521 type_IV_pilW type IV 99.5 1.8E-11 3.9E-16 100.2 24.1 201 43-245 28-232 (234)
64 KOG1129 TPR repeat-containing 99.5 6.3E-12 1.4E-16 100.6 17.9 232 115-351 225-462 (478)
65 PF13041 PPR_2: PPR repeat fam 99.5 2.4E-13 5.3E-18 80.7 6.6 49 76-124 1-49 (50)
66 KOG1173 Anaphase-promoting com 99.4 3E-10 6.5E-15 97.6 26.4 280 41-327 239-531 (611)
67 PF13041 PPR_2: PPR repeat fam 99.4 4.6E-13 9.9E-18 79.5 6.8 50 111-160 1-50 (50)
68 KOG2376 Signal recognition par 99.4 2.3E-09 5E-14 92.8 31.5 353 13-378 14-517 (652)
69 KOG1156 N-terminal acetyltrans 99.4 3.1E-09 6.7E-14 93.0 32.5 100 284-383 366-470 (700)
70 KOG1840 Kinesin light chain [C 99.4 2.8E-11 6E-16 106.4 20.5 233 148-380 199-478 (508)
71 PRK11189 lipoprotein NlpI; Pro 99.4 5.3E-11 1.2E-15 100.3 20.7 233 123-363 36-282 (296)
72 KOG2047 mRNA splicing factor [ 99.4 1.6E-08 3.4E-13 88.7 35.0 194 184-379 388-613 (835)
73 PRK11189 lipoprotein NlpI; Pro 99.4 4.4E-10 9.6E-15 94.8 24.7 218 90-315 38-264 (296)
74 COG3063 PilF Tfp pilus assembl 99.4 1.7E-10 3.6E-15 88.2 19.0 195 185-380 37-235 (250)
75 KOG3785 Uncharacterized conser 99.4 3.8E-09 8.2E-14 86.0 27.7 122 18-142 64-214 (557)
76 PF12569 NARP1: NMDA receptor- 99.4 1.2E-09 2.6E-14 97.4 27.2 299 54-380 12-333 (517)
77 COG3063 PilF Tfp pilus assembl 99.4 5.8E-11 1.3E-15 90.6 15.6 162 219-383 38-204 (250)
78 KOG1174 Anaphase-promoting com 99.3 5.2E-09 1.1E-13 86.9 26.3 301 6-315 189-499 (564)
79 KOG0548 Molecular co-chaperone 99.3 4.7E-09 1E-13 90.0 26.7 348 19-382 10-456 (539)
80 KOG0624 dsRNA-activated protei 99.3 1.4E-08 3E-13 82.4 26.1 194 45-244 37-251 (504)
81 KOG1125 TPR repeat-containing 99.3 1.9E-10 4.1E-15 99.2 15.7 220 158-380 295-526 (579)
82 cd05804 StaR_like StaR_like; a 99.3 5.2E-08 1.1E-12 85.3 31.6 59 323-381 269-336 (355)
83 PF04733 Coatomer_E: Coatomer 99.3 2.7E-10 5.8E-15 94.6 15.8 151 192-351 111-269 (290)
84 KOG2047 mRNA splicing factor [ 99.3 1E-07 2.2E-12 83.7 31.5 250 127-380 361-686 (835)
85 KOG4318 Bicoid mRNA stability 99.2 6.9E-10 1.5E-14 100.2 17.8 259 99-389 11-273 (1088)
86 KOG4340 Uncharacterized conser 99.2 5.3E-08 1.1E-12 77.6 26.2 370 1-380 1-442 (459)
87 KOG1156 N-terminal acetyltrans 99.2 2.2E-07 4.8E-12 81.7 32.3 368 8-383 4-436 (700)
88 KOG3785 Uncharacterized conser 99.2 2.9E-08 6.3E-13 81.0 24.3 350 18-383 29-492 (557)
89 cd05804 StaR_like StaR_like; a 99.2 1.4E-07 3E-12 82.6 31.0 295 47-347 7-336 (355)
90 PF04733 Coatomer_E: Coatomer 99.2 1.5E-09 3.3E-14 90.2 17.3 247 21-279 11-264 (290)
91 KOG0624 dsRNA-activated protei 99.2 1.2E-07 2.6E-12 77.1 26.9 312 15-354 42-377 (504)
92 KOG0548 Molecular co-chaperone 99.2 1.2E-08 2.6E-13 87.6 22.3 322 54-381 10-421 (539)
93 PRK04841 transcriptional regul 99.2 2E-07 4.4E-12 92.0 34.4 328 55-382 383-761 (903)
94 KOG4340 Uncharacterized conser 99.2 3.2E-08 7E-13 78.8 21.6 192 48-248 12-210 (459)
95 KOG4162 Predicted calmodulin-b 99.2 4.2E-07 9.1E-12 81.6 30.5 343 40-383 317-751 (799)
96 KOG1070 rRNA processing protei 99.1 9.7E-08 2.1E-12 90.8 25.2 234 33-270 1446-1690(1710)
97 PRK04841 transcriptional regul 99.1 9.8E-07 2.1E-11 87.3 32.7 325 24-349 387-762 (903)
98 KOG1128 Uncharacterized conser 99.1 3.3E-08 7.1E-13 88.0 19.3 239 43-298 395-634 (777)
99 KOG1070 rRNA processing protei 99.1 2.6E-08 5.6E-13 94.5 19.4 233 147-380 1457-1699(1710)
100 KOG3617 WD40 and TPR repeat-co 99.1 3.7E-07 8E-12 82.6 25.5 226 21-278 738-994 (1416)
101 KOG1125 TPR repeat-containing 99.0 1.3E-07 2.8E-12 82.1 21.2 216 55-278 294-525 (579)
102 COG5010 TadD Flp pilus assembl 99.0 5.5E-08 1.2E-12 76.3 17.0 158 213-374 64-224 (257)
103 PRK10370 formate-dependent nit 99.0 2E-08 4.4E-13 78.9 14.7 120 229-351 52-177 (198)
104 TIGR03302 OM_YfiO outer membra 99.0 1.4E-07 3E-12 77.3 19.4 183 182-381 32-232 (235)
105 KOG1128 Uncharacterized conser 99.0 3.9E-08 8.5E-13 87.5 16.8 214 150-381 400-616 (777)
106 PLN02789 farnesyltranstransfer 99.0 2.4E-07 5.3E-12 78.2 21.0 178 199-379 88-300 (320)
107 KOG1127 TPR repeat-containing 99.0 2.5E-07 5.4E-12 85.3 21.4 160 12-176 493-658 (1238)
108 KOG2376 Signal recognition par 99.0 1.1E-05 2.4E-10 70.7 30.1 318 51-380 17-445 (652)
109 PRK14720 transcript cleavage f 98.9 8.5E-07 1.9E-11 83.5 24.9 237 77-363 30-268 (906)
110 KOG3616 Selective LIM binding 98.9 1.4E-06 2.9E-11 78.3 24.4 135 190-341 739-873 (1636)
111 PLN02789 farnesyltranstransfer 98.9 3.1E-06 6.8E-11 71.6 25.8 206 54-263 45-267 (320)
112 PRK15359 type III secretion sy 98.9 5.2E-08 1.1E-12 72.5 13.1 122 237-364 14-138 (144)
113 PF12854 PPR_1: PPR repeat 98.9 3.4E-09 7.3E-14 56.4 3.9 32 108-139 2-33 (34)
114 PF12854 PPR_1: PPR repeat 98.9 1.9E-09 4.1E-14 57.4 2.9 32 6-37 2-33 (34)
115 PRK15179 Vi polysaccharide bio 98.9 3.2E-07 6.9E-12 85.3 19.3 161 213-383 83-247 (694)
116 PRK15359 type III secretion sy 98.9 4.1E-08 8.9E-13 73.1 10.8 106 272-382 14-122 (144)
117 KOG1914 mRNA cleavage and poly 98.9 4.4E-05 9.6E-10 66.4 30.0 132 8-141 17-165 (656)
118 KOG3081 Vesicle coat complex C 98.8 2.4E-05 5.3E-10 61.8 26.1 259 6-279 5-270 (299)
119 TIGR03302 OM_YfiO outer membra 98.8 8.6E-07 1.9E-11 72.6 18.7 182 44-245 31-232 (235)
120 KOG3081 Vesicle coat complex C 98.8 7.3E-06 1.6E-10 64.7 22.2 250 88-352 18-276 (299)
121 KOG0985 Vesicle coat protein c 98.8 1.6E-05 3.4E-10 74.1 27.7 261 78-373 1104-1375(1666)
122 KOG3616 Selective LIM binding 98.8 1.8E-06 3.8E-11 77.5 21.2 105 159-274 743-847 (1636)
123 KOG1914 mRNA cleavage and poly 98.8 6.6E-05 1.4E-09 65.4 34.5 128 219-349 369-503 (656)
124 PRK10370 formate-dependent nit 98.8 1.1E-06 2.4E-11 69.2 17.9 117 264-382 52-174 (198)
125 KOG3617 WD40 and TPR repeat-co 98.8 6.6E-06 1.4E-10 74.9 24.2 79 116-209 915-993 (1416)
126 PRK15179 Vi polysaccharide bio 98.8 2E-06 4.3E-11 80.2 21.7 144 179-325 82-229 (694)
127 COG5010 TadD Flp pilus assembl 98.8 7.1E-06 1.5E-10 64.7 20.8 161 152-316 70-231 (257)
128 KOG0985 Vesicle coat protein c 98.8 5.9E-05 1.3E-09 70.5 29.4 293 45-378 983-1305(1666)
129 PRK14720 transcript cleavage f 98.8 1.1E-05 2.4E-10 76.3 25.2 236 43-329 28-268 (906)
130 COG4783 Putative Zn-dependent 98.7 3.1E-06 6.7E-11 72.5 19.2 116 261-378 316-434 (484)
131 KOG3060 Uncharacterized conser 98.7 6.6E-06 1.4E-10 64.4 18.2 151 126-278 25-181 (289)
132 COG4783 Putative Zn-dependent 98.7 1.3E-05 2.7E-10 68.9 21.2 142 192-351 315-458 (484)
133 TIGR02552 LcrH_SycD type III s 98.6 3.5E-07 7.6E-12 67.7 9.5 113 238-353 5-120 (135)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 6.9E-07 1.5E-11 77.0 11.8 121 254-379 172-295 (395)
135 TIGR02552 LcrH_SycD type III s 98.6 2E-06 4.3E-11 63.6 12.5 93 289-381 19-114 (135)
136 PRK15363 pathogenicity island 98.6 5E-07 1.1E-11 66.2 8.4 96 287-382 35-133 (157)
137 KOG3060 Uncharacterized conser 98.6 5.3E-06 1.1E-10 64.9 14.4 201 160-363 24-236 (289)
138 KOG1127 TPR repeat-containing 98.5 3.8E-05 8.2E-10 71.5 20.9 350 10-377 525-909 (1238)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 8.9E-06 1.9E-10 70.3 15.4 127 184-315 170-296 (395)
140 PF09976 TPR_21: Tetratricopep 98.4 1.6E-05 3.4E-10 59.5 13.9 86 156-241 56-143 (145)
141 TIGR00756 PPR pentatricopeptid 98.4 6.1E-07 1.3E-11 48.5 4.4 33 80-112 2-34 (35)
142 PF13812 PPR_3: Pentatricopept 98.4 7.3E-07 1.6E-11 47.8 4.4 33 79-111 2-34 (34)
143 PF10037 MRP-S27: Mitochondria 98.4 7.1E-06 1.5E-10 71.2 11.9 121 41-161 61-186 (429)
144 PF09976 TPR_21: Tetratricopep 98.4 4.1E-05 9E-10 57.2 14.7 86 224-312 56-143 (145)
145 cd00189 TPR Tetratricopeptide 98.3 3.5E-06 7.6E-11 57.8 8.1 92 290-381 3-97 (100)
146 KOG2053 Mitochondrial inherita 98.3 0.0028 6.1E-08 59.0 36.7 219 22-246 20-256 (932)
147 KOG2053 Mitochondrial inherita 98.3 0.0011 2.3E-08 61.6 24.8 109 87-201 18-128 (932)
148 TIGR02795 tol_pal_ybgF tol-pal 98.3 8.4E-06 1.8E-10 58.7 9.7 102 253-354 4-112 (119)
149 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.2E-11 47.0 4.3 33 115-147 2-34 (35)
150 PF13812 PPR_3: Pentatricopept 98.3 1.3E-06 2.7E-11 46.9 3.9 33 114-146 2-34 (34)
151 PLN03088 SGT1, suppressor of 98.3 2.2E-06 4.8E-11 74.2 7.2 107 256-364 7-116 (356)
152 KOG0553 TPR repeat-containing 98.3 8.5E-06 1.8E-10 65.6 9.7 103 262-366 92-197 (304)
153 PF12895 Apc3: Anaphase-promot 98.2 6.9E-07 1.5E-11 59.7 2.6 76 301-377 3-83 (84)
154 KOG1538 Uncharacterized conser 98.2 0.00023 5E-09 63.5 18.5 86 251-346 747-845 (1081)
155 PF05843 Suf: Suppressor of fo 98.2 9.1E-05 2E-09 62.0 15.5 140 12-156 2-148 (280)
156 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.7E-05 5.9E-10 56.0 11.0 93 289-381 4-105 (119)
157 KOG0550 Molecular chaperone (D 98.2 4.2E-05 9.1E-10 64.3 12.7 255 85-348 56-351 (486)
158 PF13432 TPR_16: Tetratricopep 98.2 5.3E-06 1.2E-10 52.3 5.7 56 325-380 4-59 (65)
159 PLN03088 SGT1, suppressor of 98.2 2.9E-05 6.2E-10 67.4 11.9 101 221-324 7-109 (356)
160 PF08579 RPM2: Mitochondrial r 98.2 3.9E-05 8.3E-10 52.3 9.6 77 83-159 30-115 (120)
161 COG4235 Cytochrome c biogenesi 98.1 2.6E-05 5.6E-10 63.3 10.0 107 284-390 153-265 (287)
162 PF13432 TPR_16: Tetratricopep 98.1 4.8E-06 1E-10 52.5 4.1 60 293-352 3-65 (65)
163 PF05843 Suf: Suppressor of fo 98.1 0.00014 3E-09 60.9 13.8 130 218-350 3-139 (280)
164 cd00189 TPR Tetratricopeptide 98.1 4.2E-05 9.1E-10 52.2 9.2 89 221-312 5-93 (100)
165 PF13414 TPR_11: TPR repeat; P 98.1 7E-06 1.5E-10 52.5 4.7 62 320-381 5-67 (69)
166 PF01535 PPR: PPR repeat; Int 98.1 5.7E-06 1.2E-10 43.2 3.5 29 80-108 2-30 (31)
167 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.0056 1.2E-07 52.7 27.9 129 219-350 400-534 (660)
168 PRK10153 DNA-binding transcrip 98.1 0.00022 4.7E-09 64.8 15.2 139 213-353 334-488 (517)
169 PF08579 RPM2: Mitochondrial r 98.0 0.00013 2.9E-09 49.7 10.3 79 117-195 29-116 (120)
170 PRK02603 photosystem I assembl 98.0 0.00013 2.9E-09 56.3 12.1 132 214-367 33-166 (172)
171 PF14938 SNAP: Soluble NSF att 98.0 0.0016 3.4E-08 54.8 19.4 57 154-210 120-182 (282)
172 PRK15363 pathogenicity island 98.0 0.00029 6.2E-09 51.9 12.7 98 184-282 36-134 (157)
173 PF14938 SNAP: Soluble NSF att 98.0 0.0008 1.7E-08 56.6 17.3 20 120-139 42-61 (282)
174 KOG0553 TPR repeat-containing 98.0 1.4E-05 3.1E-10 64.3 5.8 87 295-381 89-178 (304)
175 PF13414 TPR_11: TPR repeat; P 98.0 2.3E-05 5E-10 50.0 5.8 64 286-349 2-69 (69)
176 PF12895 Apc3: Anaphase-promot 98.0 1.9E-05 4.1E-10 52.7 5.5 47 127-173 3-50 (84)
177 CHL00033 ycf3 photosystem I as 98.0 5E-05 1.1E-09 58.4 8.6 93 286-378 34-139 (168)
178 PF01535 PPR: PPR repeat; Int 98.0 1E-05 2.2E-10 42.1 3.3 30 115-144 2-31 (31)
179 COG4700 Uncharacterized protei 98.0 0.0037 8.1E-08 47.1 17.6 132 144-277 85-219 (251)
180 PF07079 DUF1347: Protein of u 98.0 0.0092 2E-07 51.5 30.9 52 328-380 472-523 (549)
181 PF06239 ECSIT: Evolutionarily 98.0 0.00016 3.4E-09 55.9 10.7 95 66-161 34-151 (228)
182 PF10037 MRP-S27: Mitochondria 98.0 0.00021 4.5E-09 62.4 12.6 122 75-196 63-186 (429)
183 PRK10866 outer membrane biogen 97.9 0.0018 4E-08 52.8 17.4 181 183-379 32-239 (243)
184 PRK10866 outer membrane biogen 97.9 0.0064 1.4E-07 49.7 20.4 57 256-312 180-237 (243)
185 KOG0550 Molecular chaperone (D 97.9 0.0039 8.4E-08 53.0 19.0 334 21-380 59-422 (486)
186 PF12688 TPR_5: Tetratrico pep 97.9 0.00046 9.9E-09 49.0 11.7 107 221-327 6-115 (120)
187 PF14559 TPR_19: Tetratricopep 97.9 1.1E-05 2.4E-10 51.4 3.2 54 329-382 2-55 (68)
188 PRK02603 photosystem I assembl 97.9 0.00061 1.3E-08 52.6 13.5 89 182-271 34-126 (172)
189 KOG2041 WD40 repeat protein [G 97.9 0.0035 7.5E-08 56.9 19.3 30 75-104 689-718 (1189)
190 KOG2280 Vacuolar assembly/sort 97.9 0.02 4.3E-07 52.6 27.6 112 249-375 682-793 (829)
191 COG4700 Uncharacterized protei 97.9 0.0028 6.1E-08 47.7 15.4 124 248-373 86-214 (251)
192 PF13371 TPR_9: Tetratricopept 97.8 4.5E-05 9.7E-10 49.3 5.3 57 326-382 3-59 (73)
193 PRK10153 DNA-binding transcrip 97.8 0.0033 7.2E-08 57.3 18.3 63 113-177 420-482 (517)
194 CHL00033 ycf3 photosystem I as 97.8 0.0011 2.4E-08 50.9 13.3 64 79-142 36-101 (168)
195 PF14559 TPR_19: Tetratricopep 97.8 0.00015 3.3E-09 46.0 7.1 62 22-84 2-64 (68)
196 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.023 5.1E-07 49.1 27.2 127 252-380 398-530 (660)
197 PRK15331 chaperone protein Sic 97.7 0.0002 4.4E-09 53.0 7.7 85 296-380 46-133 (165)
198 PF13525 YfiO: Outer membrane 97.7 0.0019 4.2E-08 51.3 13.6 168 189-372 11-198 (203)
199 PF04840 Vps16_C: Vps16, C-ter 97.7 0.027 5.9E-07 47.9 26.8 107 219-342 180-286 (319)
200 PF06239 ECSIT: Evolutionarily 97.7 0.0029 6.3E-08 49.1 13.2 89 110-198 44-153 (228)
201 PRK10803 tol-pal system protei 97.6 0.00039 8.4E-09 57.2 8.8 100 253-352 145-251 (263)
202 PF13371 TPR_9: Tetratricopept 97.6 0.00018 3.8E-09 46.5 5.6 63 295-357 3-68 (73)
203 PF04840 Vps16_C: Vps16, C-ter 97.6 0.034 7.3E-07 47.3 25.9 110 251-376 177-286 (319)
204 PF12688 TPR_5: Tetratrico pep 97.6 0.00055 1.2E-08 48.6 8.1 88 257-345 7-102 (120)
205 PF13281 DUF4071: Domain of un 97.6 0.011 2.4E-07 50.7 16.6 165 184-351 142-338 (374)
206 COG3898 Uncharacterized membra 97.5 0.042 9E-07 46.7 28.6 287 25-322 98-399 (531)
207 PF13525 YfiO: Outer membrane 97.5 0.021 4.4E-07 45.4 17.3 50 257-306 147-197 (203)
208 PF03704 BTAD: Bacterial trans 97.5 0.00035 7.6E-09 52.3 6.8 126 251-389 3-138 (146)
209 COG3898 Uncharacterized membra 97.5 0.046 9.9E-07 46.5 26.0 288 80-381 84-392 (531)
210 COG4235 Cytochrome c biogenesi 97.5 0.0054 1.2E-07 50.1 13.6 101 249-351 154-260 (287)
211 KOG2796 Uncharacterized conser 97.5 0.01 2.3E-07 47.4 14.4 138 114-253 178-321 (366)
212 KOG1130 Predicted G-alpha GTPa 97.5 0.0006 1.3E-08 57.7 8.0 262 86-348 25-345 (639)
213 KOG2796 Uncharacterized conser 97.5 0.019 4.2E-07 45.9 15.6 229 47-294 70-326 (366)
214 KOG1130 Predicted G-alpha GTPa 97.5 0.0022 4.7E-08 54.4 11.1 269 10-279 14-343 (639)
215 PRK10803 tol-pal system protei 97.5 0.0015 3.4E-08 53.7 10.2 97 219-315 146-245 (263)
216 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00038 8.3E-09 60.3 6.9 98 285-385 73-178 (453)
217 PF03704 BTAD: Bacterial trans 97.4 0.0079 1.7E-07 45.0 13.1 71 80-151 64-139 (146)
218 PF13431 TPR_17: Tetratricopep 97.4 9.6E-05 2.1E-09 39.1 1.4 32 341-372 2-33 (34)
219 PF13428 TPR_14: Tetratricopep 97.4 0.00037 8E-09 39.6 3.8 41 320-360 3-43 (44)
220 PF13424 TPR_12: Tetratricopep 97.3 0.00043 9.3E-09 45.3 4.4 23 355-377 49-71 (78)
221 PF13424 TPR_12: Tetratricopep 97.3 0.00017 3.8E-09 47.2 2.0 61 287-347 5-75 (78)
222 PRK15331 chaperone protein Sic 97.2 0.032 7E-07 41.6 13.3 89 190-279 44-133 (165)
223 KOG0543 FKBP-type peptidyl-pro 97.1 0.0014 2.9E-08 55.7 6.6 126 256-381 213-355 (397)
224 PF12921 ATP13: Mitochondrial 97.1 0.0086 1.9E-07 43.0 9.7 52 246-297 47-98 (126)
225 KOG1585 Protein required for f 97.1 0.055 1.2E-06 42.9 14.5 51 290-341 193-250 (308)
226 PF09205 DUF1955: Domain of un 97.1 0.034 7.3E-07 39.5 11.9 141 226-384 12-152 (161)
227 PF10300 DUF3808: Protein of u 97.1 0.041 8.9E-07 49.9 15.6 162 217-381 189-376 (468)
228 KOG0543 FKBP-type peptidyl-pro 97.1 0.0053 1.2E-07 52.2 9.2 127 220-348 212-356 (397)
229 COG4105 ComL DNA uptake lipopr 97.0 0.13 2.7E-06 41.5 17.5 70 192-261 43-116 (254)
230 KOG2041 WD40 repeat protein [G 97.0 0.29 6.2E-06 45.2 25.1 31 43-73 689-719 (1189)
231 COG1729 Uncharacterized protei 97.0 0.0041 8.9E-08 50.2 7.7 100 253-353 144-250 (262)
232 PF13512 TPR_18: Tetratricopep 96.9 0.02 4.3E-07 41.6 9.8 60 295-354 18-83 (142)
233 PF12921 ATP13: Mitochondrial 96.9 0.027 5.8E-07 40.5 10.4 48 109-156 48-96 (126)
234 PF10300 DUF3808: Protein of u 96.9 0.071 1.5E-06 48.4 15.5 158 83-242 193-373 (468)
235 KOG4555 TPR repeat-containing 96.8 0.0089 1.9E-07 42.2 7.3 86 297-382 53-145 (175)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0076 1.7E-07 52.5 8.5 97 249-348 73-175 (453)
237 COG0457 NrfG FOG: TPR repeat [ 96.8 0.21 4.5E-06 40.4 25.1 223 126-350 36-268 (291)
238 PF02259 FAT: FAT domain; Int 96.8 0.33 7.2E-06 42.4 20.9 65 215-279 145-212 (352)
239 PF04184 ST7: ST7 protein; In 96.7 0.2 4.3E-06 44.4 16.3 95 255-349 263-377 (539)
240 PF07079 DUF1347: Protein of u 96.7 0.4 8.7E-06 41.9 29.5 333 15-357 132-530 (549)
241 KOG1538 Uncharacterized conser 96.7 0.37 7.9E-06 44.1 17.6 217 15-245 602-846 (1081)
242 KOG3941 Intermediate in Toll s 96.6 0.025 5.3E-07 45.8 9.5 98 66-163 54-173 (406)
243 COG3118 Thioredoxin domain-con 96.6 0.24 5.3E-06 40.7 15.1 47 196-242 147-194 (304)
244 PF04053 Coatomer_WDAD: Coatom 96.6 0.12 2.7E-06 46.2 14.8 158 86-277 269-428 (443)
245 COG1729 Uncharacterized protei 96.6 0.037 8E-07 44.8 10.2 96 219-315 145-243 (262)
246 PF13512 TPR_18: Tetratricopep 96.5 0.095 2.1E-06 38.2 11.1 19 334-352 115-133 (142)
247 KOG1941 Acetylcholine receptor 96.5 0.077 1.7E-06 44.7 11.9 224 125-348 18-276 (518)
248 PF08631 SPO22: Meiosis protei 96.5 0.4 8.7E-06 40.3 24.6 101 150-251 86-192 (278)
249 PRK11906 transcriptional regul 96.5 0.21 4.6E-06 44.0 15.0 157 217-376 252-431 (458)
250 PF09205 DUF1955: Domain of un 96.5 0.19 4.1E-06 35.9 12.1 46 59-104 15-60 (161)
251 PF13170 DUF4003: Protein of u 96.4 0.38 8.2E-06 40.6 15.8 125 27-153 78-222 (297)
252 COG3118 Thioredoxin domain-con 96.4 0.44 9.6E-06 39.3 17.3 142 123-265 144-286 (304)
253 COG4785 NlpI Lipoprotein NlpI, 96.4 0.17 3.7E-06 39.5 12.1 164 213-382 96-267 (297)
254 KOG2114 Vacuolar assembly/sort 96.4 0.55 1.2E-05 44.3 17.3 176 81-277 337-516 (933)
255 smart00299 CLH Clathrin heavy 96.3 0.27 5.9E-06 36.3 14.1 86 81-174 10-95 (140)
256 PF04097 Nic96: Nup93/Nic96; 96.3 1 2.2E-05 42.7 20.4 87 292-378 419-531 (613)
257 PF04053 Coatomer_WDAD: Coatom 96.3 0.12 2.5E-06 46.3 12.5 129 81-240 298-426 (443)
258 PRK11906 transcriptional regul 96.2 0.078 1.7E-06 46.6 10.9 116 266-381 273-401 (458)
259 COG0457 NrfG FOG: TPR repeat [ 96.2 0.51 1.1E-05 38.1 26.5 220 92-315 37-264 (291)
260 smart00299 CLH Clathrin heavy 96.2 0.34 7.3E-06 35.8 14.4 127 13-159 9-136 (140)
261 PF13281 DUF4071: Domain of un 96.1 0.8 1.7E-05 39.7 20.8 78 116-193 144-227 (374)
262 KOG2610 Uncharacterized conser 96.1 0.17 3.8E-06 42.2 11.4 155 195-352 115-283 (491)
263 KOG2280 Vacuolar assembly/sort 96.1 1.3 2.8E-05 41.5 24.5 104 271-379 668-771 (829)
264 PF08631 SPO22: Meiosis protei 96.0 0.75 1.6E-05 38.7 22.3 20 22-41 4-23 (278)
265 KOG1585 Protein required for f 96.0 0.59 1.3E-05 37.4 16.2 204 46-274 31-250 (308)
266 KOG1920 IkappaB kinase complex 95.9 2 4.4E-05 42.5 26.2 112 248-376 932-1050(1265)
267 KOG1258 mRNA processing protei 95.9 1.3 2.9E-05 40.2 34.3 179 184-367 298-490 (577)
268 KOG1258 mRNA processing protei 95.9 1.4 3E-05 40.2 23.2 122 250-373 296-421 (577)
269 COG1747 Uncharacterized N-term 95.8 1.3 2.9E-05 39.5 23.2 179 145-329 63-250 (711)
270 PF07035 Mic1: Colon cancer-as 95.8 0.59 1.3E-05 35.4 15.1 134 98-243 14-147 (167)
271 KOG3941 Intermediate in Toll s 95.8 0.098 2.1E-06 42.5 8.7 98 204-302 55-173 (406)
272 KOG4234 TPR repeat-containing 95.7 0.024 5.3E-07 43.4 5.0 100 259-360 103-210 (271)
273 COG4105 ComL DNA uptake lipopr 95.7 0.85 1.8E-05 36.9 20.4 55 123-177 44-100 (254)
274 PF00515 TPR_1: Tetratricopept 95.7 0.021 4.5E-07 30.1 3.4 31 320-350 3-33 (34)
275 PF04184 ST7: ST7 protein; In 95.7 0.22 4.8E-06 44.1 11.1 66 287-352 259-330 (539)
276 PF07719 TPR_2: Tetratricopept 95.7 0.03 6.6E-07 29.3 4.0 32 320-351 3-34 (34)
277 KOG1941 Acetylcholine receptor 95.7 0.9 2E-05 38.7 14.1 164 115-278 85-273 (518)
278 KOG4570 Uncharacterized conser 95.6 0.27 5.9E-06 40.7 10.7 102 40-142 58-164 (418)
279 KOG2114 Vacuolar assembly/sort 95.6 2.2 4.9E-05 40.6 24.0 55 292-346 710-764 (933)
280 PF02259 FAT: FAT domain; Int 95.6 1.5 3.2E-05 38.4 16.6 61 320-380 148-212 (352)
281 PRK11619 lytic murein transgly 95.5 2.3 5E-05 40.4 28.5 112 230-344 255-372 (644)
282 COG3629 DnrI DNA-binding trans 95.4 0.058 1.3E-06 44.4 6.6 59 320-378 155-213 (280)
283 PF13428 TPR_14: Tetratricopep 95.4 0.042 9E-07 31.0 4.1 25 220-244 5-29 (44)
284 COG3629 DnrI DNA-binding trans 95.4 0.32 6.9E-06 40.2 10.6 76 81-157 156-236 (280)
285 PRK15180 Vi polysaccharide bio 95.4 1.9 4E-05 38.3 22.7 126 15-142 293-420 (831)
286 COG3947 Response regulator con 95.4 0.52 1.1E-05 38.7 11.4 61 320-380 281-341 (361)
287 KOG0890 Protein kinase of the 95.3 5.1 0.00011 43.1 22.8 318 51-383 1388-1733(2382)
288 KOG4555 TPR repeat-containing 95.3 0.51 1.1E-05 33.6 9.8 88 55-143 52-145 (175)
289 COG2976 Uncharacterized protei 95.2 1.1 2.4E-05 34.6 13.6 125 219-349 57-190 (207)
290 COG4649 Uncharacterized protei 95.0 1.2 2.5E-05 33.8 14.5 137 75-212 56-196 (221)
291 PF13170 DUF4003: Protein of u 94.9 1.3 2.8E-05 37.4 13.3 53 232-284 198-254 (297)
292 PF13181 TPR_8: Tetratricopept 94.8 0.06 1.3E-06 28.2 3.6 31 320-350 3-33 (34)
293 KOG2610 Uncharacterized conser 94.6 2.4 5.2E-05 35.8 17.1 151 89-241 114-272 (491)
294 PF13176 TPR_7: Tetratricopept 94.6 0.071 1.5E-06 28.5 3.5 24 321-344 2-25 (36)
295 COG4649 Uncharacterized protei 94.5 1.6 3.4E-05 33.1 13.5 133 47-181 60-200 (221)
296 PF10602 RPN7: 26S proteasome 94.5 0.56 1.2E-05 36.2 9.4 94 47-140 37-140 (177)
297 PF10602 RPN7: 26S proteasome 94.2 2.1 4.5E-05 33.1 12.0 60 185-244 38-101 (177)
298 PF09613 HrpB1_HrpK: Bacterial 94.1 1.8 3.9E-05 32.4 12.0 18 123-140 54-71 (160)
299 cd00923 Cyt_c_Oxidase_Va Cytoc 94.1 0.44 9.5E-06 31.9 6.7 63 231-295 22-84 (103)
300 PF00637 Clathrin: Region in C 94.0 0.058 1.3E-06 40.1 3.2 129 16-163 12-140 (143)
301 KOG1920 IkappaB kinase complex 94.0 7.4 0.00016 38.9 19.9 31 145-176 788-820 (1265)
302 KOG4648 Uncharacterized conser 94.0 0.27 6E-06 41.2 7.0 91 260-353 106-200 (536)
303 PF13176 TPR_7: Tetratricopept 93.9 0.16 3.4E-06 27.1 3.9 24 116-139 2-25 (36)
304 PRK15180 Vi polysaccharide bio 93.9 0.8 1.7E-05 40.5 9.9 88 262-351 334-424 (831)
305 PF02284 COX5A: Cytochrome c o 93.6 0.4 8.7E-06 32.4 6.0 62 232-295 26-87 (108)
306 PF13431 TPR_17: Tetratricopep 93.4 0.15 3.2E-06 26.8 3.2 30 36-66 4-33 (34)
307 KOG1586 Protein required for f 93.2 1.4 3.1E-05 35.1 9.4 32 321-352 157-188 (288)
308 PF07035 Mic1: Colon cancer-as 93.1 3 6.6E-05 31.7 15.4 136 30-176 13-148 (167)
309 KOG4234 TPR repeat-containing 92.9 1.1 2.5E-05 34.7 8.3 89 223-315 102-196 (271)
310 TIGR02561 HrpB1_HrpK type III 92.5 0.49 1.1E-05 34.7 5.7 68 299-368 22-94 (153)
311 PRK12798 chemotaxis protein; R 92.5 7 0.00015 34.4 19.0 187 196-383 125-326 (421)
312 PF13374 TPR_10: Tetratricopep 92.5 0.25 5.4E-06 27.2 3.5 27 320-346 4-30 (42)
313 PF00637 Clathrin: Region in C 92.2 0.26 5.6E-06 36.6 4.3 129 221-367 12-140 (143)
314 COG1747 Uncharacterized N-term 92.0 9.2 0.0002 34.6 20.7 176 181-363 64-250 (711)
315 PRK09687 putative lyase; Provi 92.0 6.7 0.00014 33.0 27.7 218 43-278 34-261 (280)
316 KOG0890 Protein kinase of the 92.0 22 0.00047 38.8 25.4 313 16-348 1388-1732(2382)
317 PF13174 TPR_6: Tetratricopept 91.9 0.32 7E-06 25.0 3.4 27 324-350 6-32 (33)
318 PF07721 TPR_4: Tetratricopept 91.8 0.15 3.3E-06 24.8 1.8 23 354-376 3-25 (26)
319 TIGR02561 HrpB1_HrpK type III 91.7 4.1 8.9E-05 30.1 10.8 20 88-107 54-73 (153)
320 KOG1550 Extracellular protein 91.6 12 0.00026 35.2 22.4 275 94-381 228-538 (552)
321 PF09613 HrpB1_HrpK: Bacterial 91.6 4.6 0.0001 30.3 13.4 20 193-212 54-73 (160)
322 COG2909 MalT ATP-dependent tra 91.5 14 0.00031 35.8 25.2 216 159-377 426-684 (894)
323 PF13929 mRNA_stabil: mRNA sta 91.3 7.7 0.00017 32.3 14.9 64 109-172 198-262 (292)
324 KOG4648 Uncharacterized conser 91.2 0.36 7.7E-06 40.6 4.3 87 294-380 104-193 (536)
325 KOG1308 Hsp70-interacting prot 91.1 0.16 3.5E-06 42.6 2.3 84 300-383 127-213 (377)
326 KOG4570 Uncharacterized conser 91.1 2.9 6.2E-05 35.0 9.2 101 178-280 59-164 (418)
327 PF00515 TPR_1: Tetratricopept 91.0 0.68 1.5E-05 24.0 4.0 27 115-141 3-29 (34)
328 PF07719 TPR_2: Tetratricopept 90.8 0.21 4.4E-06 26.0 1.8 29 353-381 2-30 (34)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 90.7 2.7 5.8E-05 28.3 7.1 45 96-140 25-69 (103)
330 PF02284 COX5A: Cytochrome c o 90.6 3.8 8.2E-05 27.9 7.8 37 174-210 36-72 (108)
331 PF13374 TPR_10: Tetratricopep 90.4 0.83 1.8E-05 25.0 4.3 28 114-141 3-30 (42)
332 PF11207 DUF2989: Protein of u 90.3 3.5 7.5E-05 32.3 8.6 74 233-307 123-198 (203)
333 PF11207 DUF2989: Protein of u 90.1 4.1 8.9E-05 31.9 8.8 79 123-203 117-198 (203)
334 KOG4642 Chaperone-dependent E3 89.9 0.88 1.9E-05 36.3 5.2 83 261-346 20-106 (284)
335 KOG2471 TPR repeat-containing 89.9 4.4 9.6E-05 36.2 9.8 44 21-64 27-70 (696)
336 KOG0686 COP9 signalosome, subu 89.8 13 0.00029 32.5 15.0 161 47-211 151-332 (466)
337 PF06552 TOM20_plant: Plant sp 89.7 3.6 7.9E-05 31.5 8.1 60 316-382 66-137 (186)
338 COG4455 ImpE Protein of avirul 89.7 2.2 4.8E-05 33.7 7.1 57 15-72 5-61 (273)
339 PF14853 Fis1_TPR_C: Fis1 C-te 89.6 0.52 1.1E-05 27.8 3.0 34 323-356 6-39 (53)
340 KOG0276 Vesicle coat complex C 89.2 18 0.0004 33.5 14.7 131 49-209 617-747 (794)
341 PRK09687 putative lyase; Provi 89.1 13 0.00027 31.4 27.6 80 75-160 34-117 (280)
342 KOG4077 Cytochrome c oxidase, 88.8 3.1 6.8E-05 29.5 6.7 61 233-295 66-126 (149)
343 TIGR03504 FimV_Cterm FimV C-te 88.8 0.52 1.1E-05 26.5 2.5 27 356-382 3-29 (44)
344 PF13929 mRNA_stabil: mRNA sta 88.8 13 0.00028 31.1 12.1 150 6-155 107-285 (292)
345 smart00028 TPR Tetratricopepti 88.5 0.95 2.1E-05 22.4 3.5 29 321-349 4-32 (34)
346 PF13174 TPR_6: Tetratricopept 88.4 0.43 9.4E-06 24.5 2.0 28 354-381 2-29 (33)
347 KOG2396 HAT (Half-A-TPR) repea 88.3 19 0.00042 32.5 31.6 96 285-380 457-558 (568)
348 KOG1550 Extracellular protein 88.1 23 0.00051 33.3 24.1 147 27-178 228-394 (552)
349 COG2909 MalT ATP-dependent tra 88.1 27 0.00059 34.0 21.8 196 192-391 424-657 (894)
350 PF13181 TPR_8: Tetratricopept 88.0 0.77 1.7E-05 23.8 2.8 29 353-381 2-30 (34)
351 COG2976 Uncharacterized protei 87.9 11 0.00024 29.3 13.9 57 190-246 133-189 (207)
352 COG4785 NlpI Lipoprotein NlpI, 87.5 13 0.00028 29.6 14.6 160 113-280 99-266 (297)
353 KOG0276 Vesicle coat complex C 87.3 10 0.00022 35.1 10.5 131 13-173 616-746 (794)
354 KOG0545 Aryl-hydrocarbon recep 87.2 3 6.5E-05 33.6 6.6 98 253-350 180-296 (329)
355 PRK10941 hypothetical protein; 86.7 2.8 6E-05 34.9 6.6 57 323-379 186-242 (269)
356 KOG2063 Vacuolar assembly/sort 86.2 37 0.00081 33.6 18.2 339 14-375 310-707 (877)
357 PF06552 TOM20_plant: Plant sp 86.0 11 0.00024 28.9 8.7 107 27-142 7-136 (186)
358 TIGR03504 FimV_Cterm FimV C-te 85.9 2.3 5E-05 23.9 4.0 22 120-141 6-27 (44)
359 KOG2034 Vacuolar sorting prote 85.8 37 0.0008 33.2 22.5 170 53-241 365-555 (911)
360 PF07163 Pex26: Pex26 protein; 85.4 12 0.00026 31.0 9.2 14 121-134 91-104 (309)
361 PF04910 Tcf25: Transcriptiona 85.4 25 0.00055 30.9 12.7 56 324-379 109-166 (360)
362 PF08424 NRDE-2: NRDE-2, neces 85.1 24 0.00052 30.5 17.4 113 233-348 48-184 (321)
363 KOG1464 COP9 signalosome, subu 84.9 21 0.00044 29.5 20.4 277 6-291 21-341 (440)
364 COG5159 RPN6 26S proteasome re 84.6 22 0.00048 29.6 19.8 125 84-208 9-150 (421)
365 COG4455 ImpE Protein of avirul 84.5 3 6.5E-05 33.0 5.3 64 289-352 3-69 (273)
366 PF07163 Pex26: Pex26 protein; 83.9 14 0.00029 30.7 8.9 87 153-239 88-181 (309)
367 TIGR02508 type_III_yscG type I 83.6 12 0.00025 25.6 8.4 51 87-143 48-98 (115)
368 PF14561 TPR_20: Tetratricopep 83.4 2.6 5.6E-05 28.2 4.2 54 316-369 19-75 (90)
369 KOG1586 Protein required for f 83.2 23 0.00049 28.7 17.6 18 56-73 24-41 (288)
370 PRK11619 lytic murein transgly 83.1 45 0.00098 32.1 32.0 173 199-372 295-496 (644)
371 PRK10941 hypothetical protein; 82.8 6.4 0.00014 32.8 7.0 68 290-357 184-254 (269)
372 TIGR02508 type_III_yscG type I 82.8 13 0.00027 25.4 7.2 79 266-348 20-98 (115)
373 COG5159 RPN6 26S proteasome re 82.7 27 0.00058 29.2 18.6 194 16-209 8-232 (421)
374 KOG2168 Cullins [Cell cycle co 82.4 51 0.0011 32.2 17.0 89 291-379 626-734 (835)
375 PF10579 Rapsyn_N: Rapsyn N-te 82.2 5.6 0.00012 25.7 5.0 17 291-307 47-63 (80)
376 KOG0376 Serine-threonine phosp 81.5 1.1 2.5E-05 39.5 2.4 99 257-358 10-112 (476)
377 PF13762 MNE1: Mitochondrial s 81.5 19 0.00041 26.6 10.2 50 112-161 78-128 (145)
378 PF09454 Vps23_core: Vps23 cor 81.4 10 0.00023 23.5 5.9 52 7-59 4-55 (65)
379 KOG2066 Vacuolar assembly/sort 81.1 55 0.0012 31.6 25.0 73 18-93 363-438 (846)
380 KOG3364 Membrane protein invol 80.9 9.5 0.00021 27.7 6.2 70 285-354 30-107 (149)
381 KOG2297 Predicted translation 80.9 33 0.00071 29.0 14.9 15 7-21 107-121 (412)
382 PF04190 DUF410: Protein of un 80.8 32 0.00068 28.7 14.0 84 284-381 87-170 (260)
383 smart00386 HAT HAT (Half-A-TPR 80.5 3.6 7.8E-05 20.6 3.4 30 332-361 1-30 (33)
384 PF10366 Vps39_1: Vacuolar sor 80.4 16 0.00035 25.5 7.3 26 219-244 42-67 (108)
385 PF08424 NRDE-2: NRDE-2, neces 80.3 38 0.00082 29.3 14.5 116 267-384 47-186 (321)
386 KOG4642 Chaperone-dependent E3 80.2 23 0.00051 28.7 8.8 85 225-314 19-105 (284)
387 PF00244 14-3-3: 14-3-3 protei 80.2 17 0.00038 29.7 8.6 48 335-382 143-199 (236)
388 KOG4507 Uncharacterized conser 79.6 8.6 0.00019 35.4 7.0 133 248-382 568-706 (886)
389 cd00280 TRFH Telomeric Repeat 78.5 20 0.00044 27.7 7.6 22 85-106 118-139 (200)
390 PF08311 Mad3_BUB1_I: Mad3/BUB 78.1 14 0.00031 26.6 6.7 42 336-377 81-124 (126)
391 KOG4279 Serine/threonine prote 77.9 69 0.0015 30.9 15.6 173 168-352 183-400 (1226)
392 KOG4507 Uncharacterized conser 77.5 8 0.00017 35.6 6.2 99 262-361 618-719 (886)
393 COG3947 Response regulator con 77.1 43 0.00094 28.1 14.7 71 219-290 282-356 (361)
394 PF10345 Cohesin_load: Cohesin 76.6 73 0.0016 30.6 29.6 180 29-209 39-251 (608)
395 PF10579 Rapsyn_N: Rapsyn N-te 76.6 8.7 0.00019 24.8 4.5 45 228-272 18-64 (80)
396 PF11846 DUF3366: Domain of un 76.2 10 0.00022 29.8 6.1 30 284-313 141-170 (193)
397 KOG0551 Hsp90 co-chaperone CNS 76.1 10 0.00023 32.2 6.1 78 295-372 89-173 (390)
398 PRK12798 chemotaxis protein; R 76.0 57 0.0012 29.0 19.3 185 126-315 125-323 (421)
399 PF14689 SPOB_a: Sensor_kinase 75.8 7.4 0.00016 23.9 4.1 22 84-105 29-50 (62)
400 PF14689 SPOB_a: Sensor_kinase 75.7 4.1 8.9E-05 25.0 2.9 24 220-243 27-50 (62)
401 KOG4814 Uncharacterized conser 75.7 27 0.00058 32.8 8.9 84 297-380 364-456 (872)
402 PF04097 Nic96: Nup93/Nic96; 75.3 80 0.0017 30.3 19.7 43 83-126 116-158 (613)
403 KOG4077 Cytochrome c oxidase, 75.2 28 0.0006 25.0 7.2 46 97-142 68-113 (149)
404 PF11838 ERAP1_C: ERAP1-like C 75.0 54 0.0012 28.2 15.8 30 112-141 200-229 (324)
405 KOG0376 Serine-threonine phosp 75.0 4.6 9.9E-05 36.0 4.1 103 222-329 10-116 (476)
406 PF11848 DUF3368: Domain of un 74.8 14 0.0003 21.3 5.1 32 89-120 13-44 (48)
407 KOG2066 Vacuolar assembly/sort 74.2 88 0.0019 30.3 24.6 150 53-211 363-533 (846)
408 COG4976 Predicted methyltransf 73.7 10 0.00023 30.4 5.3 58 296-353 4-64 (287)
409 PF10345 Cohesin_load: Cohesin 73.7 87 0.0019 30.1 34.0 363 16-380 105-605 (608)
410 COG5191 Uncharacterized conser 73.6 8.6 0.00019 32.3 5.0 80 282-361 102-185 (435)
411 KOG2908 26S proteasome regulat 72.9 61 0.0013 27.9 9.8 65 85-149 82-156 (380)
412 PF12862 Apc5: Anaphase-promot 71.7 11 0.00024 25.4 4.7 52 329-380 9-69 (94)
413 PF10366 Vps39_1: Vacuolar sor 71.3 32 0.0007 24.0 7.3 27 320-346 41-67 (108)
414 PRK10564 maltose regulon perip 70.5 11 0.00023 31.7 5.0 37 80-116 259-295 (303)
415 PF15469 Sec5: Exocyst complex 70.0 33 0.00072 26.6 7.6 29 366-394 153-181 (182)
416 COG5108 RPO41 Mitochondrial DN 69.2 58 0.0013 30.9 9.6 87 51-140 33-130 (1117)
417 PF11846 DUF3366: Domain of un 69.2 31 0.00067 27.1 7.4 53 90-142 120-173 (193)
418 KOG0687 26S proteasome regulat 68.7 75 0.0016 27.3 9.8 95 252-348 105-211 (393)
419 PRK10564 maltose regulon perip 68.7 11 0.00025 31.5 4.8 41 217-257 258-298 (303)
420 PF06957 COPI_C: Coatomer (COP 68.0 93 0.002 28.0 13.2 22 84-105 124-145 (422)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 67.4 44 0.00096 24.1 8.7 43 96-138 81-124 (126)
422 KOG1464 COP9 signalosome, subu 67.3 72 0.0016 26.5 18.2 58 219-277 194-257 (440)
423 cd08819 CARD_MDA5_2 Caspase ac 66.9 35 0.00075 22.7 6.7 65 30-97 21-85 (88)
424 cd08819 CARD_MDA5_2 Caspase ac 66.7 35 0.00076 22.6 6.5 38 195-235 48-85 (88)
425 KOG2908 26S proteasome regulat 66.6 85 0.0018 27.1 9.6 86 117-202 79-176 (380)
426 PRK13800 putative oxidoreducta 66.5 1.6E+02 0.0034 30.1 28.0 122 215-343 755-877 (897)
427 PF09670 Cas_Cas02710: CRISPR- 66.5 96 0.0021 27.6 11.6 56 121-177 139-198 (379)
428 PF13762 MNE1: Mitochondrial s 66.3 51 0.0011 24.5 11.0 93 104-196 28-128 (145)
429 KOG0686 COP9 signalosome, subu 66.3 96 0.0021 27.6 14.5 157 114-279 151-332 (466)
430 KOG3824 Huntingtin interacting 65.8 6.5 0.00014 32.9 2.8 55 299-353 128-185 (472)
431 PF12968 DUF3856: Domain of Un 64.9 31 0.00068 24.5 5.5 58 289-346 57-128 (144)
432 COG4976 Predicted methyltransf 64.8 10 0.00022 30.4 3.6 56 327-382 4-59 (287)
433 PF09986 DUF2225: Uncharacteri 64.7 42 0.00091 27.0 7.2 30 353-382 166-195 (214)
434 PRK13184 pknD serine/threonine 64.4 1.7E+02 0.0037 29.8 26.5 316 19-346 483-868 (932)
435 PF10255 Paf67: RNA polymerase 63.7 36 0.00078 30.3 7.1 55 292-346 127-192 (404)
436 PF04190 DUF410: Protein of un 62.7 90 0.002 26.0 16.7 27 182-208 89-115 (260)
437 KOG2659 LisH motif-containing 62.1 83 0.0018 25.4 9.4 21 223-243 71-91 (228)
438 PF09670 Cas_Cas02710: CRISPR- 61.7 1.2E+02 0.0026 27.1 11.6 54 192-245 140-198 (379)
439 COG0735 Fur Fe2+/Zn2+ uptake r 61.5 65 0.0014 24.0 7.5 61 137-198 10-70 (145)
440 COG0735 Fur Fe2+/Zn2+ uptake r 61.3 43 0.00094 24.9 6.3 63 99-162 7-69 (145)
441 KOG0687 26S proteasome regulat 61.3 1.1E+02 0.0023 26.4 12.9 21 83-103 109-129 (393)
442 PF11817 Foie-gras_1: Foie gra 59.8 69 0.0015 26.4 8.0 58 117-174 182-244 (247)
443 PF11817 Foie-gras_1: Foie gra 59.0 33 0.00072 28.3 6.0 22 257-278 184-205 (247)
444 PF14561 TPR_20: Tetratricopep 58.8 52 0.0011 22.0 8.3 36 210-245 16-51 (90)
445 KOG0991 Replication factor C, 58.4 1E+02 0.0022 25.2 10.2 37 110-147 236-272 (333)
446 PF11848 DUF3368: Domain of un 58.0 34 0.00074 19.6 5.0 31 125-155 14-44 (48)
447 COG5108 RPO41 Mitochondrial DN 56.9 80 0.0017 30.1 8.2 74 16-89 33-114 (1117)
448 COG5187 RPN7 26S proteasome re 56.7 1.2E+02 0.0026 25.6 12.9 26 113-138 115-140 (412)
449 PF07575 Nucleopor_Nup85: Nup8 56.1 28 0.00061 32.9 5.7 23 162-184 509-531 (566)
450 PF12862 Apc5: Anaphase-promot 55.9 60 0.0013 21.8 7.0 53 89-141 9-69 (94)
451 PF04910 Tcf25: Transcriptiona 55.5 1.5E+02 0.0032 26.2 19.4 100 112-211 39-167 (360)
452 KOG2297 Predicted translation 54.6 1.4E+02 0.003 25.5 10.7 17 150-166 323-339 (412)
453 PF11838 ERAP1_C: ERAP1-like C 54.3 1.4E+02 0.0031 25.6 21.2 82 164-246 146-231 (324)
454 PF11123 DNA_Packaging_2: DNA 54.2 54 0.0012 20.8 5.8 36 23-59 9-44 (82)
455 PF11663 Toxin_YhaV: Toxin wit 53.8 17 0.00036 26.4 2.9 36 123-160 105-140 (140)
456 COG2912 Uncharacterized conser 53.3 37 0.0008 28.2 5.1 53 326-378 189-241 (269)
457 PF12968 DUF3856: Domain of Un 52.6 80 0.0017 22.6 5.9 60 320-379 57-127 (144)
458 PHA02875 ankyrin repeat protei 52.4 1.8E+02 0.0038 26.2 10.2 203 121-342 7-223 (413)
459 PF09477 Type_III_YscG: Bacter 51.4 81 0.0018 22.0 8.8 79 163-246 21-99 (116)
460 PF10255 Paf67: RNA polymerase 51.2 1.6E+02 0.0035 26.4 9.0 61 80-140 124-191 (404)
461 PRK14962 DNA polymerase III su 50.9 2.1E+02 0.0045 26.5 15.0 33 125-157 255-287 (472)
462 PF07720 TPR_3: Tetratricopept 50.2 39 0.00084 18.0 3.8 16 325-340 8-23 (36)
463 KOG1308 Hsp70-interacting prot 50.0 19 0.00041 30.8 3.1 84 263-348 126-212 (377)
464 TIGR02710 CRISPR-associated pr 49.9 1.9E+02 0.0041 25.8 11.8 54 20-73 139-198 (380)
465 cd07153 Fur_like Ferric uptake 49.0 62 0.0013 22.7 5.4 46 222-267 6-51 (116)
466 cd00280 TRFH Telomeric Repeat 48.8 1.3E+02 0.0028 23.5 9.2 35 294-328 118-153 (200)
467 KOG2659 LisH motif-containing 48.7 1.4E+02 0.0031 24.1 9.0 96 43-138 23-128 (228)
468 PHA02537 M terminase endonucle 48.7 1.5E+02 0.0032 24.2 9.0 110 219-350 86-210 (230)
469 COG0790 FOG: TPR repeat, SEL1 48.3 1.7E+02 0.0036 24.7 23.4 148 59-212 54-220 (292)
470 KOG3807 Predicted membrane pro 48.2 1.8E+02 0.0039 25.1 12.0 166 186-365 188-359 (556)
471 PRK09462 fur ferric uptake reg 48.1 1.1E+02 0.0025 22.7 7.0 64 99-162 3-66 (148)
472 PF06957 COPI_C: Coatomer (COP 47.8 1.6E+02 0.0035 26.6 8.6 31 150-180 302-332 (422)
473 KOG2300 Uncharacterized conser 47.3 2.3E+02 0.005 26.1 26.6 357 19-380 15-473 (629)
474 PF14853 Fis1_TPR_C: Fis1 C-te 46.8 60 0.0013 19.1 4.5 19 88-106 11-29 (53)
475 PRK11639 zinc uptake transcrip 46.8 1.2E+02 0.0026 23.3 6.8 45 221-265 30-74 (169)
476 PF09454 Vps23_core: Vps23 cor 46.5 70 0.0015 19.9 4.8 48 146-194 6-53 (65)
477 PF07678 A2M_comp: A-macroglob 46.3 1.3E+02 0.0029 24.7 7.6 21 260-280 201-221 (246)
478 PF07064 RIC1: RIC1; InterPro 46.2 1.8E+02 0.0038 24.3 16.2 153 187-351 86-253 (258)
479 PF02847 MA3: MA3 domain; Int 46.0 1E+02 0.0022 21.5 7.3 23 51-73 7-29 (113)
480 KOG4567 GTPase-activating prot 45.7 1.9E+02 0.0042 24.7 8.9 87 168-261 263-359 (370)
481 PF12926 MOZART2: Mitotic-spin 45.6 88 0.0019 20.8 8.0 43 99-141 29-71 (88)
482 PF07575 Nucleopor_Nup85: Nup8 45.6 80 0.0017 30.0 6.9 23 230-252 509-531 (566)
483 PHA02875 ankyrin repeat protei 45.6 2.3E+02 0.0049 25.5 11.5 208 159-386 10-229 (413)
484 PRK11639 zinc uptake transcrip 45.6 1.1E+02 0.0023 23.5 6.4 38 162-199 39-76 (169)
485 PF10963 DUF2765: Protein of u 45.3 83 0.0018 20.7 4.8 62 282-348 11-73 (83)
486 PF01475 FUR: Ferric uptake re 44.8 59 0.0013 23.1 4.7 46 220-265 11-56 (120)
487 smart00777 Mad3_BUB1_I Mad3/BU 44.3 1.2E+02 0.0026 21.9 8.9 42 96-137 81-123 (125)
488 KOG3824 Huntingtin interacting 43.4 29 0.00063 29.3 3.2 51 262-315 127-178 (472)
489 PRK06645 DNA polymerase III su 43.3 1.4E+02 0.003 27.9 7.8 71 39-112 202-291 (507)
490 COG2256 MGS1 ATPase related to 43.1 2.5E+02 0.0054 25.2 14.4 44 114-157 247-293 (436)
491 PF09868 DUF2095: Uncharacteri 42.9 88 0.0019 22.0 4.8 19 23-41 73-91 (128)
492 PF04090 RNA_pol_I_TF: RNA pol 42.4 1.1E+02 0.0025 24.2 6.1 61 320-380 43-104 (199)
493 KOG4814 Uncharacterized conser 42.1 2E+02 0.0044 27.5 8.3 83 262-346 365-456 (872)
494 PF10475 DUF2450: Protein of u 41.8 2.2E+02 0.0048 24.2 13.6 110 83-203 103-217 (291)
495 KOG2422 Uncharacterized conser 41.5 3.1E+02 0.0068 25.9 14.3 156 193-349 248-450 (665)
496 KOG1839 Uncharacterized protei 41.3 4.5E+02 0.0098 27.7 11.2 155 19-173 940-1124(1236)
497 PF07064 RIC1: RIC1; InterPro 41.2 2.1E+02 0.0046 23.9 13.4 154 218-381 84-249 (258)
498 KOG4567 GTPase-activating prot 41.0 2.3E+02 0.005 24.3 10.0 44 236-279 263-306 (370)
499 PRK13800 putative oxidoreducta 40.9 4.1E+02 0.009 27.2 30.1 247 43-314 632-879 (897)
500 KOG0530 Protein farnesyltransf 40.9 2.2E+02 0.0047 23.9 11.3 130 226-361 53-190 (318)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-64 Score=472.40 Aligned_cols=385 Identities=32% Similarity=0.545 Sum_probs=366.7
Q ss_pred CCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHH
Q 016128 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMI 85 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll 85 (394)
++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+||+++
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li 196 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTII 196 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999998 78999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC------------------------------------------------------
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKP------------------------------------------------------ 111 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p------------------------------------------------------ 111 (394)
.+|++.|++++|+++|++|.+.|+.|
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999998777655
Q ss_pred ------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCC
Q 016128 112 ------------DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADL 179 (394)
Q Consensus 112 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 179 (394)
|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 56678888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHH
Q 016128 180 NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (394)
.|+..+++.|+.+|++.|++++|.++|++|.. +|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCchHHH
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-PTVSVYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~ 338 (394)
+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++.+|++.|++++|.++++++.. |+..+|+.++.+|..+|+.+.|.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999988779999999999999999999999999999999976 77779999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCCC
Q 016128 339 EMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAGI 393 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 393 (394)
.+++++.+++|.+..+|..++++|.+.|++++|.+++++|.+.|+.+.|++||++
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE
Confidence 9999999999999999999999999999999999999999999999999999975
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.9e-62 Score=466.14 Aligned_cols=388 Identities=31% Similarity=0.601 Sum_probs=351.8
Q ss_pred CccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhH
Q 016128 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILT 80 (394)
Q Consensus 1 M~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 80 (394)
|++. |+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+
T Consensus 279 M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s 356 (857)
T PLN03077 279 MREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVS 356 (857)
T ss_pred HHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeee
Confidence 5667 99999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
||+++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888888888888887777777777777777777
Q ss_pred cchhhHHHHHHHHHHHc------------------------------CCCCCHH--------------------------
Q 016128 161 LSALKLGKETHGHVIRA------------------------------DLNKDES-------------------------- 184 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~------------------------------~~~~~~~-------------------------- 184 (394)
.|++++|.++|++|.+. ++.||..
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 77777666666655321 2334443
Q ss_pred ---------HHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH
Q 016128 185 ---------MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255 (394)
Q Consensus 185 ---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (394)
++++|+.+|++.|++++|.++|+.+ .+|..+||.++.+|++.|+.++|+++|++|.+.|+.||..||+
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 4445556777777888888888777 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC-CCChhhHHHHHHHHHhcCCc
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNS 334 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 334 (394)
.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++.+|.+.|++++|.+++++|. +|+..+|++|+.+|..+|+.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999666999999999999999999999999999999996 58888999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCCC
Q 016128 335 DLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAGI 393 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 393 (394)
+.+....+++.+++|+++..|..+.+.|.+.|+|++|.++.+.|.+.|++++||+|||+
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999985
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-60 Score=450.62 Aligned_cols=379 Identities=21% Similarity=0.307 Sum_probs=333.7
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CCChhHHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SRNILTWNTM 84 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l 84 (394)
.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3888999999999999999999999999999999999999999999999999999999999999876 5889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHhhccc
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS--TGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~~ 162 (394)
|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999976 578899999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHH
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|... .||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876 6778889999999999999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----C
Q 016128 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----P 316 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~ 316 (394)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. ++.||..+|+.||.+|++.|++++|.++|++|.. |
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999876 8899999999999999999999999999998864 8
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHHhhC-CCCCchHHHHHHHHhh----cC-------------------CcccHH
Q 016128 317 TVSVYHSLLGACWCHLNSDLGEEMAMKLQEME-PENPTPFVILSNIYAG----LG-------------------RWEDVG 372 (394)
Q Consensus 317 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~g-------------------~~~~a~ 372 (394)
|..+|+.++.+|.+.|+.++|.++++++.+.+ .++..+|..++..|.+ ++ ..+.|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 88899999999999999999999999998877 5577788888765432 11 235688
Q ss_pred HHHHHhhhccccccC
Q 016128 373 RIRQMINDRQLTKLP 387 (394)
Q Consensus 373 ~~~~~m~~~~~~~~~ 387 (394)
.+|++|.+.|+.|+.
T Consensus 833 ~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 833 MVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHCCCCCCH
Confidence 899999999988874
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-60 Score=451.51 Aligned_cols=381 Identities=17% Similarity=0.272 Sum_probs=352.1
Q ss_pred CccccCC-CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CC
Q 016128 1 MKECLSD-EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SR 76 (394)
Q Consensus 1 M~~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 76 (394)
|.+. |+ .|+..+++.++..|.+.|.++.|.++++.|.. |+..+|+.++.+|++.|+++.|.++|++|.. .|
T Consensus 396 M~~~-gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p 470 (1060)
T PLN03218 396 MEKR-GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA 470 (1060)
T ss_pred HHhC-CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 3444 53 45666667777777777777777777776653 8999999999999999999999999999986 68
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCCh
Q 016128 157 ACADLSALKLGKETHGHVIR--ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEY 232 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 232 (394)
+|++.|++++|.+++++|.+ .|+.||..+|+.++.+|++.|++++|.++|+.|... +++..+|+.++.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 99999999999999999976 678999999999999999999999999999999876 67888999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHh
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRE 312 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (394)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+. |+.|+..+|+.|+.+|++.|++++|.++|++
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CC----CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhC-CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccC
Q 016128 313 LP----EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME-PENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLP 387 (394)
Q Consensus 313 ~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 387 (394)
|. .|+..+|+.++.+|.+.|++++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.+++++|.+.|+.|+.
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 95 3888899999999999999999999999999876 668899999999999999999999999999999999875
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-58 Score=441.15 Aligned_cols=380 Identities=27% Similarity=0.407 Sum_probs=348.7
Q ss_pred CccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhH
Q 016128 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILT 80 (394)
Q Consensus 1 M~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 80 (394)
|++. |+.||..||+.++++|++.+++..+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|+ .+|..+
T Consensus 178 M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s 255 (857)
T PLN03077 178 MLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCIS 255 (857)
T ss_pred HHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcch
Confidence 5566 88899999999999988888888888888888888888999999999999999999999999999999 889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------------------------------------------------
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD------------------------------------------------ 112 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~------------------------------------------------ 112 (394)
||++|.+|++.|++++|+++|++|...|+.||
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999988888774
Q ss_pred ------------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHH
Q 016128 113 ------------------PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHV 174 (394)
Q Consensus 113 ------------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 174 (394)
..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 44455556666677777888888888888888999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhH
Q 016128 175 IRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254 (394)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (394)
.+.|+.|+..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 9999999999999999999999999999999999987 7889999999999999999999999999986 589999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCc
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNS 334 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 334 (394)
+.++.+|++.|+++.+.+++..+.+. |+.++..+++.|+.+|.++|++++|.++|+++ .||..+|+.++.+|.+.|+.
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCH
Confidence 99999999999999999999999988 99999999999999999999999999999999 78888999999999999999
Q ss_pred hHHHHHHHHHHhhC-CCCCchHHHHHHHHhhcCCcccHHHHHHHhh-hccccccC
Q 016128 335 DLGEEMAMKLQEME-PENPTPFVILSNIYAGLGRWEDVGRIRQMIN-DRQLTKLP 387 (394)
Q Consensus 335 ~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~ 387 (394)
++|+++|++|.+.+ .||..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999877 6688999999999999999999999999999 68998875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-56 Score=420.19 Aligned_cols=375 Identities=21% Similarity=0.283 Sum_probs=359.6
Q ss_pred CCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CCChhHHH
Q 016128 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIE-KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SRNILTWN 82 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 82 (394)
..++..+|+.+|..+.+.|++++|.++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..+.. .||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566799999999999999999999999999765 689999999999999999999999999999876 68999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
.++..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999974 7999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
+.+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.. +|..+||.++.+|++.|+.++|.++|++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 79999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHH
Q 016128 243 QQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYH 322 (394)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 322 (394)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+++.|+.+|++.|++++|.++|++|.+||..+|+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n 395 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHH
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-CCCCchHHHHHHHHhhcCCcccHHHHHHHhhh-ccccccCC
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEME-PENPTPFVILSNIYAGLGRWEDVGRIRQMIND-RQLTKLPG 388 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~ 388 (394)
.++.+|.+.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+..
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999999877 66889999999999999999999999999986 68888753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=4.5e-28 Score=237.52 Aligned_cols=364 Identities=13% Similarity=0.098 Sum_probs=256.4
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAG 87 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~ 87 (394)
+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.. +.+...+..++..
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 44566677777778888888888888887665 55677777788888888888888888877653 3455667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG 167 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 167 (394)
+.+.|++++|..+++.+.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 778888888888888777653 3366777777778888888888888887777653 33556677777777777888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
...++++.+.. +.+...+..++..+...|++++|.++++.+... +.++..+..+...+...|++++|...|+++...+
T Consensus 655 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 655 ITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 88777777654 335666777777777777777777777776654 4455566777777777777777777777776653
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHH
Q 016128 247 VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHS 323 (394)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ 323 (394)
|+..++..++..+...|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|...|+++.+ |+.. +++.
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445666667777777777777777777665 3345566667777777777777777777777654 4444 6666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
++..+...|+ .+|+..++++.+..|.++..+..++.++.+.|++++|..+++++.+.+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666 667777777766666666666666667777777777777777766654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.9e-27 Score=233.09 Aligned_cols=364 Identities=13% Similarity=0.043 Sum_probs=219.1
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMI 85 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll 85 (394)
+++..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.. +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3445566666666666666666666666666544 44455555666666666666666666666543 33455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
..+.+.|++++|...++++...+. .+...+..++..|...|++++|..+++++.+.. +.+...|..+..++...|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 666666666666666666655432 244555566666666666666666666665442 345556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
+|...++.+.+.. +.+...+..+..++...|++++|...|+++... |.+...+..++..+...|++++|..+++.+.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 224455556666666666666666666665443 44455566666666666666666666666655
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hH
Q 016128 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VY 321 (394)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~ 321 (394)
.+ +++...+..+...+...|++++|.+.++.+... .|+..++..++..+.+.|++++|.+.++++.+ |+.. .+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 53 234555555666666666666666666666543 33445555566666666666666666666554 4444 56
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 322 HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 322 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
..+...+...|+.++|.+.|+++.+..|+++.++..++.++.+.|+ .+|+..++++.+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666 556666666554
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=1.1e-22 Score=189.18 Aligned_cols=362 Identities=12% Similarity=0.017 Sum_probs=288.3
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLN 91 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~ 91 (394)
+......+.+.|+++.|+..|+..++. .|+...|..+..+|.+.|++++|+..+++... +.+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445666788889999999999998875 46788899999999999999999999999875 44667899999999999
Q ss_pred CCHHHHHHHHHHHHhcCC----------------------------CC-CHHHHHHH-----------------------
Q 016128 92 GRSEKAMELFEGLAHEGF----------------------------KP-DPATWNSM----------------------- 119 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~----------------------------~p-~~~~~~~l----------------------- 119 (394)
|++++|+.-|......+. .| +...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876654432210 00 00000000
Q ss_pred -------HHHH------HccCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH
Q 016128 120 -------ISGF------SQLGMRFEAFKLFEKMQSTG-MVP-SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184 (394)
Q Consensus 120 -------~~~~------~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 184 (394)
+... ...+++++|++.|++..+.+ ..| ....+..+...+...|++++|...+++.++... ....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence 0000 12357889999999998764 233 445677888888999999999999999988753 3466
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.|..+...+...|++++|...|++.... |.++..|..+...+...|++++|+..|++..+... .+...+..+...+.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHH
Confidence 7888999999999999999999987655 67788899999999999999999999999988742 356778888899999
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-h-------HHHHHHHHHhcCC
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-V-------YHSLLGACWCHLN 333 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~-------~~~l~~~~~~~g~ 333 (394)
.|++++|+..++...+ ..+.++..++.+...+...|++++|...|++... |+.. . ++.....+...|+
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999986 3455678899999999999999999999999775 3321 1 1222223344699
Q ss_pred chHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 334 SDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+++|.++++++.+++|.+...+..++.++.+.|++++|++.+++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999889999999999999999999999998764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.1e-23 Score=184.54 Aligned_cols=290 Identities=13% Similarity=0.107 Sum_probs=184.4
Q ss_pred HHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccC
Q 016128 53 VDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD---PATWNSMISGFSQLG 127 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~ 127 (394)
...+...|++++|+..|+++.. +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3345667888888888888765 33455677777788888888888888887776532222 245677777788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCchHHH
Q 016128 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDE----SMATALISMYMKCGQPSWAR 203 (394)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~ 203 (394)
++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888877652 345667777777777788888888877777765433221 23344555666667777777
Q ss_pred HHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCC
Q 016128 204 RFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFG 282 (394)
Q Consensus 204 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 282 (394)
..|+++... |.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 777665543 33444566666666677777777777777665432222345566666666666666666666666543
Q ss_pred CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 016128 283 LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWC---HLNSDLGEEMAMKLQE 346 (394)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 346 (394)
.|+...+..++..+.+.|++++|..+++++.+ |+...++.++..+.. .|+.+++...++++.+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 34444555666666666666666666665554 555555555544442 3456666666665554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=8.4e-23 Score=189.32 Aligned_cols=332 Identities=11% Similarity=-0.009 Sum_probs=268.3
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLN 91 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~ 91 (394)
...++..+.+.|+++.|..+++..+... +.+...+..++.+....|++++|+..|+++.. +.+...+..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4566778888999999999999999876 44556666666777889999999999999876 45667788888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETH 171 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 171 (394)
|++++|...+++..+... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999999999988632 25778888999999999999999999988765322 23333333 3477889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhh----HHHHHHHHHHcC
Q 016128 172 GHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYES----AVEIFDLMQQEK 246 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~ 246 (394)
+.+.+....++......+..++...|++++|...+++.... |.++..+..+...+...|++++ |+..|++..+..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 99887754445555566678888999999999999987665 6677778889999999999986 899999998864
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHH
Q 016128 247 VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHS 323 (394)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ 323 (394)
. .+...+..+...+...|++++|...++..... -+.+...+..+...+.+.|++++|...|+++.. |+.. .+..
T Consensus 281 P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 S-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3 36678889999999999999999999998863 234456777888999999999999999998875 6655 4445
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+..++...|+.++|...|+++.+..|.+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 67788899999999999999999988754
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.3e-23 Score=185.75 Aligned_cols=300 Identities=13% Similarity=0.123 Sum_probs=249.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhcc
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS---LKCVTSVLSACADL 161 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~ 161 (394)
...+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4456678999999999999998743 2567899999999999999999999999987543222 25678889999999
Q ss_pred chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCCh------hhHHHHHHHHhhcCChhhH
Q 016128 162 SALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDP------AFWNAMISGYGRNGEYESA 235 (394)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a 235 (394)
|+++.|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+....++. ..+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998764 3467889999999999999999999999987653221 2356777888999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 236 VEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
...|+++.+.. +.+...+..+...+...|++++|.++++++... +......++..++.+|.+.|++++|...++++.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998864 234667888889999999999999999999864 2222245678899999999999999999999876
Q ss_pred --CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh---cCCcccHHHHHHHhhhccccccCCC
Q 016128 316 --PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG---LGRWEDVGRIRQMINDRQLTKLPGI 389 (394)
Q Consensus 316 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 389 (394)
|+...+..++..+.+.|++++|...++++.+..|+++ .+..++..+.. .|+.++++.++++|.+.++.|+|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 7766778899999999999999999999999988775 55555555443 5689999999999999999998874
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.8e-23 Score=176.59 Aligned_cols=360 Identities=13% Similarity=0.139 Sum_probs=187.0
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHH-HHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNT-MIAG 87 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-ll~~ 87 (394)
-..+|..+...+-..|+++.|+++++.+++.. +.....|..+..++...|+.+.|.+.|.+... .|+.....+ +...
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 35788899999999999999999999999876 66788899999999999999999888887663 343332222 2223
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhh
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALK 165 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~ 165 (394)
+-..|+.++|..-|.+..+. .|. ..+|+.|...+-.+|+...|+..|++.... .|+ ...|-.|...|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 33345555555555554443 221 334455555555555555555555554442 222 234444444444444445
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.|...+.+..... +....++..+...|-..|+.+-|+..+++.... |.-+..|+.|..++-..|+..+|...|++...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 4444444443332 112333444444444444444454444443333 23334444444444444445455444444444
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-h
Q 016128 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-V 320 (394)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~ 320 (394)
.. .....+.+.|...+...|.++.|..+|....+ +.|. ...++.|...|...|++++|+..+++... |.-. .
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 31 11233444444444444444444444444432 1222 23344444444444444444444444443 3333 4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
|+.+...|-..|+...|++.+.+++..+|.-..++..|+..|...|+..+|+.-++...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2e-21 Score=192.09 Aligned_cols=354 Identities=12% Similarity=0.048 Sum_probs=220.2
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCh---hHHH-----------
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNI---LTWN----------- 82 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~----------- 82 (394)
...+...|++++|...|+..++.. +.+..++..+..++.+.|++++|+..|++... .|+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667789999999999999876 56788999999999999999999999998764 3322 1121
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh---
Q 016128 83 -TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC--- 158 (394)
Q Consensus 83 -~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--- 158 (394)
.....+.+.|++++|+..|++..+... .+...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 223466788999999999999998743 366778888999999999999999999988753 22333443333333
Q ss_pred ---------------------------------------hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 159 ---------------------------------------ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 159 ---------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
...|++++|.+.+++..+... .+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 344556666666666555432 2444555556666666666
Q ss_pred hHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh---------hHHHHHHHHHccCCHHH
Q 016128 200 SWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA---------SFVAVLSACGHAGHVDK 269 (394)
Q Consensus 200 ~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~ 269 (394)
++|...++++... |.++..+..+...+...++.++|+..++.+......++.. .+..+...+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 6666666665432 3344444333334444555555555544432211111100 01122333444455555
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
|.++++. .+.++..+..+...+.+.|++++|+..|++..+ |+.. .+..++..+...|++++|++.++.+.+
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5554441 123344455566666666666666666666654 5544 666666666666666666666666666
Q ss_pred hCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 347 MEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..|.++..+..++.++.+.|++++|.++++++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66666666666666666666666666666666553
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.9e-21 Score=179.10 Aligned_cols=328 Identities=8% Similarity=-0.048 Sum_probs=272.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 125 (394)
-...++..+.+.|++++|..+++.... +.+...+..++.+....|++++|...++++...... +...+..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 345567778889999999999998865 345566677778888899999999999999987433 67788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRF 205 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (394)
.|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998753 345677888999999999999999999988776543 33344333 347889999999999
Q ss_pred HHHhhcC-C-CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH----HHHHHHHchh
Q 016128 206 FDQFEIK-P-DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDK----ALQIFTMMDD 279 (394)
Q Consensus 206 ~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 279 (394)
++.+... + .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...++...+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9997664 2 233344556778899999999999999999875 3367788889999999999986 8999999886
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
. .+.+...+..+...+.+.|++++|...+++... |+.. .+..+..++...|++++|+..++++.+..|.++..+.
T Consensus 279 l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 F--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3 344577889999999999999999999999887 7766 8888999999999999999999999999998877777
Q ss_pred HHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 357 ILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 357 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.++.++...|++++|+..+++..+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77889999999999999999987653
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.8e-20 Score=185.44 Aligned_cols=369 Identities=10% Similarity=-0.006 Sum_probs=286.8
Q ss_pred CCC-ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCc-hHHH------------HHHHHHHHhcCChhHHHHHHHHh
Q 016128 7 DEP-NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSD-TMIG------------TALVDMYLKCGCLPCAHNVFQEL 72 (394)
Q Consensus 7 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~A~~~~~~~ 72 (394)
..| +...+..+...+.+.|++++|++.|++.++...... ...+ ......+.+.|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345 677888888999999999999999999887653221 1112 12345677889999999999988
Q ss_pred cc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--------------------------------
Q 016128 73 KG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS-------------------------------- 118 (394)
Q Consensus 73 ~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------------------------------- 118 (394)
.. +.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 76 445667888889999999999999999998876322 2333322
Q ss_pred ----------HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHH
Q 016128 119 ----------MISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188 (394)
Q Consensus 119 ----------l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 188 (394)
+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++++.+... .+...+..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a 534 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYA 534 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 2334556799999999999998763 33566778889999999999999999999987653 35555555
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcCCCChh-----------hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIKPDDPA-----------FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
+...+...++.++|...++.+.....+.. .+..+...+...|+.++|+.+++. .+.+...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 66677889999999999998765322211 123456778899999999999872 24466677888
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS 334 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~ 334 (394)
...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++.++...+ |+.. .+..+..++...|++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 99999999999999999999873 345678889999999999999999999998876 5665 778888999999999
Q ss_pred hHHHHHHHHHHhhCCCCCc------hHHHHHHHHhhcCCcccHHHHHHHhhh-ccccc
Q 016128 335 DLGEEMAMKLQEMEPENPT------PFVILSNIYAGLGRWEDVGRIRQMIND-RQLTK 385 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~ 385 (394)
++|.++++++....|+++. .+..++..+...|++++|+..+++... .|+.|
T Consensus 688 ~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 9999999999988765543 556678899999999999999999864 34543
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-21 Score=167.29 Aligned_cols=351 Identities=14% Similarity=0.124 Sum_probs=301.9
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAG 87 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~ 87 (394)
.+..|..+..++...|+.+.|.+.|...++.+ |...-..+.+...+-..|++++|...+.+..+ .|. ...|+.|...
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~ 227 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCV 227 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchH
Confidence 45788899999999999999999999988765 32333445566666678999999999988765 443 4679999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL 166 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (394)
+-..|+...|+..|++..+. .|+ ..+|-.|...|...+.+++|+..|.+..... +.....+..+...|...|.++.
T Consensus 228 f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred HhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHH
Confidence 99999999999999999886 454 6689999999999999999999999887652 3345678888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 167 GKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
|...+++.++.... -+..|+.|..++-..|++.+|.+.+.+.... |...++.+.|...+...|.++.|..+|....+-
T Consensus 305 AI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 305 AIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99999999987533 4678999999999999999999999987665 666788999999999999999999999998875
Q ss_pred CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-h
Q 016128 246 KVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-V 320 (394)
Q Consensus 246 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~ 320 (394)
.| -....+.|...|-++|++++|+..+++.. .+.|+. ..|+.+...|...|+.+.|.+.+.+.+. |.-. .
T Consensus 384 --~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 384 --FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred --ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 34 35678899999999999999999999998 567774 6889999999999999999999999987 5555 9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCccc
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWED 370 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (394)
++.|...|...|+..+|++.|+.++++.|+.|.+|..++.++--..+|.+
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999988776666665
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=8.2e-20 Score=173.06 Aligned_cols=367 Identities=11% Similarity=0.007 Sum_probs=233.8
Q ss_pred hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 11 SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 11 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
..-..-.+......|+.++|++++....... +.+...+..+..++.+.|++++|..+|++... +.+...+..+...+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3333444444555555555555555554322 33344455555555555555555555555432 22344444555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-----
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA----- 163 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----- 163 (394)
...|++++|+..+++..+... .+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 555555555555555554411 1333 5555555555555555555555555432 1122222223333322222
Q ss_pred --------------------------------------h---hHHHHHHHHHHHc-CCCCCHH-HH-H---HHHHHHHHc
Q 016128 164 --------------------------------------L---KLGKETHGHVIRA-DLNKDES-MA-T---ALISMYMKC 196 (394)
Q Consensus 164 --------------------------------------~---~~a~~~~~~~~~~-~~~~~~~-~~-~---~l~~~~~~~ 196 (394)
+ ++|.+.++.+.+. ...|+.. .+ . ..+..+...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 2 4555566666543 1222221 11 1 112344577
Q ss_pred CCchHHHHHHHHhhcCCCC-hh-hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHhhHHHHHHHHHccCCHHHHH
Q 016128 197 GQPSWARRFFDQFEIKPDD-PA-FWNAMISGYGRNGEYESAVEIFDLMQQEKVKP---NSASFVAVLSACGHAGHVDKAL 271 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 271 (394)
|++++|+..|+++...+++ +. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 9999999999998876322 22 22335778999999999999999987653221 1344666777889999999999
Q ss_pred HHHHHchhcCC----------CCCC---HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCch
Q 016128 272 QIFTMMDDDFG----------LKPK---QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSD 335 (394)
Q Consensus 272 ~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~ 335 (394)
.+++.+..... -.|+ ...+..+...+...|++++|+++++++.. |+.. .+..++..+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999876410 0122 23455677889999999999999999876 7777 8999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 336 LGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+|++.++++.+..|+++..+..++..+.+.|++++|+.+++.+.+.
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999864
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.4e-19 Score=168.41 Aligned_cols=331 Identities=11% Similarity=-0.022 Sum_probs=258.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL 126 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 126 (394)
.+......+.+.|++++|+..|++... .|+...|..+..+|.+.|++++|++.++...+.... +..+|..+..+|...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 345667788899999999999999776 678888999999999999999999999999987432 677899999999999
Q ss_pred CCHHHHHHHHHHHHhCCC--------------------------------CCCHHHHHHHHHH-----------------
Q 016128 127 GMRFEAFKLFEKMQSTGM--------------------------------VPSLKCVTSVLSA----------------- 157 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~--------------------------------~~~~~~~~~l~~~----------------- 157 (394)
|++++|+..|......+. .|...........
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876654432110 0110111010000
Q ss_pred ----------------hhccchhhHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhh
Q 016128 158 ----------------CADLSALKLGKETHGHVIRAD-L-NKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAF 218 (394)
Q Consensus 158 ----------------~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 218 (394)
....+++++|.+.|+...+.+ . +.....+..+...+...|++++|...|++.... |.....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 367 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS 367 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 011246788899999988765 2 234567788888899999999999999997665 555778
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+...+.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 8899999999999999999999998864 336788889999999999999999999999863 3445677788889999
Q ss_pred hcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH-------HHHHhhcCCc
Q 016128 299 RSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL-------SNIYAGLGRW 368 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~ 368 (394)
+.|++++|+..|++... |+.. .++.+..++...|++++|+..|+++.++.|.+...+..+ ...+...|++
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 99999999999998876 7666 899999999999999999999999999988654433221 1223346999
Q ss_pred ccHHHHHHHhhhcc
Q 016128 369 EDVGRIRQMINDRQ 382 (394)
Q Consensus 369 ~~a~~~~~~m~~~~ 382 (394)
++|.+++++.....
T Consensus 525 ~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 525 IEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=2e-18 Score=164.22 Aligned_cols=366 Identities=11% Similarity=0.021 Sum_probs=259.5
Q ss_pred CCCChHHHHHH-HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh-cCChhHHHHHHHHhccCCChhHHHHH
Q 016128 7 DEPNSVTFISV-ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK-CGCLPCAHNVFQELKGSRNILTWNTM 84 (394)
Q Consensus 7 ~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l 84 (394)
..|+..+.... .+.|.+.|++++|++++..+.+.+ +.+......|..+|.. .++ +++..+++... +.+...+..+
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l-k~d~~l~~al 253 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI-FTDPQSRITY 253 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc-ccCHHHHHHH
Confidence 34446555555 888999999999999999999887 5555556666667776 366 77777765433 4567777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-C----------------------------------------------------
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFK-P---------------------------------------------------- 111 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~-p---------------------------------------------------- 111 (394)
...|.+.|+.++|.++++++...-.. |
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 88888888888888877776543211 1
Q ss_pred -----------------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--------
Q 016128 112 -----------------------------------------DPATWNSMISGFSQLGMRFEAFKLFEKMQST-------- 142 (394)
Q Consensus 112 -----------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------- 142 (394)
+......+.-...+.|+.++|.++|+.....
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 1111111111223344444444444443220
Q ss_pred -------------------------------------------------------CC-CC--CHHHHHHHHHHhhccchh
Q 016128 143 -------------------------------------------------------GM-VP--SLKCVTSVLSACADLSAL 164 (394)
Q Consensus 143 -------------------------------------------------------~~-~~--~~~~~~~l~~~~~~~~~~ 164 (394)
+. ++ +...|..+..++.. +++
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 00 11 33344444444444 556
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
++|...+.+..... |+......+...+...|++++|...|+++...+++...+..+...+.+.|+.++|...+++..+
T Consensus 493 ~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 493 GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66777666665543 4443333445555688899999999988777666666677777888889999999999998887
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hH
Q 016128 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VY 321 (394)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~ 321 (394)
.. +++...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|...+++... |+.. .+
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~ 646 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ 646 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 64 223333334444445669999999999999853 56788899999999999999999999999987 7777 88
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 322 HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 322 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.+..++...|+.++|+..++++.+..|.++..+..++.++...|++++|+..+++..+..
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999988653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.9e-18 Score=163.91 Aligned_cols=341 Identities=11% Similarity=0.016 Sum_probs=262.8
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAG 87 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~ 87 (394)
+...+..+...+.+.|++++|.++++..++.. |.+...+..+..++...|++++|+..++++.. +.+.. +..+...
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 44568889999999999999999999998876 66677888899999999999999999999875 34556 8888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHH--------------------------------
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKL-------------------------------- 135 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~-------------------------------- 135 (394)
+...|+.++|+..++++.+.... +...+..+..++...|..++|+..
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 99999999999999999987443 555556666666666665544433
Q ss_pred --------------HHHHHhC-CCCCCHH-HHH----HHHHHhhccchhhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 016128 136 --------------FEKMQST-GMVPSLK-CVT----SVLSACADLSALKLGKETHGHVIRADLN-KDESMATALISMYM 194 (394)
Q Consensus 136 --------------~~~m~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 194 (394)
++.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.. |+ .....+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence 3344322 1122211 111 1133455678999999999999887643 32 22333577899
Q ss_pred HcCCchHHHHHHHHhhcCCCC-----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-----------CCC---HhhHH
Q 016128 195 KCGQPSWARRFFDQFEIKPDD-----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-----------KPN---SASFV 255 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~ 255 (394)
..|++++|+..|+++...++. ......+..++...|++++|..+++.+..... .|+ ...+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 999999999999998665332 23456677788999999999999999987531 123 23456
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.+...+...|+.++|++.++++.. ..+.+...+..+...+...|++++|++.+++... |+.. .+...+..+...|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 677888999999999999999986 4456678889999999999999999999999987 8777 7778888899999
Q ss_pred CchHHHHHHHHHHhhCCCCCchHH
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
++++|+..++++.+..|+++.+..
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999875543
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.5e-17 Score=155.12 Aligned_cols=354 Identities=13% Similarity=0.049 Sum_probs=256.5
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHHhcCChhHHHHHHHHhccCC-ChhHHHHH--HHHHHhcCCHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSD-TMIGTALVDMYLKCGCLPCAHNVFQELKGSR-NILTWNTM--IAGMMLNGRSEK 96 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l--l~~~~~~~~~~~ 96 (394)
..+.|+++.|++.|++.++.. +.+ ..++ .++..+...|+.++|+..+++.. .| +...+..+ ...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 458899999999999999876 333 2344 88888999999999999999998 44 33344444 567888899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 016128 97 AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIR 176 (394)
Q Consensus 97 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (394)
|+++|+++.+.... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999998544 5677778888999999999999999999875 45656665555555556666669999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhh----------------------------------------------
Q 016128 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFE---------------------------------------------- 210 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------------------------------------- 210 (394)
.. +.+...+..+..++.+.|-...|.++..+-+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 75 3356666667777777666555555444211
Q ss_pred --cC-CCCh---hhH-H---HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 211 --IK-PDDP---AFW-N---AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 211 --~~-~~~~---~~~-~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
.. +.++ ..| . -.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 10 1111 111 1 123456677888888888888888776555567778888888888888888888887654
Q ss_pred CC----CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C-------------Chh---hHHHHHHHHHhcCCchHHH
Q 016128 281 FG----LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P-------------TVS---VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 281 ~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-------------~~~---~~~~l~~~~~~~g~~~~a~ 338 (394)
.+ .+++......|.-+|...+++++|..+++++.+ | +.. .+..++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 21 122333456778888888888888888887765 2 111 3344566677788888888
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 339 EMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+.++++....|.|+.....++.++...|.+.+|++.++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 8888888888888888888888888888888888888766543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.4e-16 Score=148.80 Aligned_cols=370 Identities=11% Similarity=0.022 Sum_probs=264.9
Q ss_pred CCCCh--HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHH
Q 016128 7 DEPNS--VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWN 82 (394)
Q Consensus 7 ~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 82 (394)
..|+. ..+ .++..+...|+.++|+..+++..... +........+...+...|++++|+++|+++.. +.+...+.
T Consensus 63 ~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~ 140 (822)
T PRK14574 63 AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLIS 140 (822)
T ss_pred hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45554 233 77777778888888888888877211 22333334446677788888888888888776 34556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
.++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|
T Consensus 141 gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 141 GMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 7778888888888888888888776 5555555444444545566666888888887763 224444444454444433
Q ss_pred hhhHH------------------------------------------------HHHHHHHHHc-CCCCCH-HHH----HH
Q 016128 163 ALKLG------------------------------------------------KETHGHVIRA-DLNKDE-SMA----TA 188 (394)
Q Consensus 163 ~~~~a------------------------------------------------~~~~~~~~~~-~~~~~~-~~~----~~ 188 (394)
-...| +.-++.+... +..|.. ..| .-
T Consensus 218 ~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 218 IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence 33222 2222332221 111221 111 22
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcCCC--ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-----CCCHhhHHHHHHHH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIKPD--DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-----KPNSASFVAVLSAC 261 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 261 (394)
-+-++...|++.++++.|+.+...+. ...+-..+.++|...+++++|+.+|+++..... .++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 34567788999999999999987643 334457788999999999999999999976531 22334457889999
Q ss_pred HccCCHHHHHHHHHHchhcCCC----------CCCH---hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGL----------KPKQ---EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLL 325 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~ 325 (394)
...+++++|..+++.+.+.... .|++ ..+..++..+...|+..+|++.++++.. |... ....+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999873110 1221 2344567788999999999999999987 8777 999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..+...|.+.+|++.++.+...+|.+..+....+.++...|+|++|..+.+.+...
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998777553
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.5e-16 Score=151.55 Aligned_cols=351 Identities=11% Similarity=0.023 Sum_probs=267.7
Q ss_pred hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC----ChhHHHHHHHHHHhcCC---HH
Q 016128 24 LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SR----NILTWNTMIAGMMLNGR---SE 95 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~---~~ 95 (394)
.+...++.+.+..|.+.. +-+....-.+.-...+.|+.++|.++|+.... ++ +....+.++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 355666666666666553 44555555666667788999999999998765 22 22344466777776655 33
Q ss_pred HHHHH----------------------HHHHHhc-CC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 016128 96 KAMEL----------------------FEGLAHE-GF-KP--DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149 (394)
Q Consensus 96 ~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 149 (394)
++..+ .+..... +. ++ +...|..+..++.. ++.++|+..+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 2222221 11 33 57788888888877 8899999988887765 36655
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhh
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGR 228 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~ 228 (394)
....+...+...|++++|...++++... .|+...+..+..++.+.|+.++|...+++.... |.....+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 5445556667899999999999998665 334445567788899999999999999998765 3333333444444556
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 016128 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308 (394)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (394)
.|++++|...+++..+. .|+...+..+...+.+.|+.++|+..++..... -+.+...+..+..++...|++++|+.
T Consensus 589 ~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 589 PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999999886 467888999999999999999999999999863 34456778888889999999999999
Q ss_pred HHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 309 LIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 309 ~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
.+++..+ |+.. .+..+..++...|++++|+..++++.+..|++..+....+....+..+++.|.+-+++....++.
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999886 7777 99999999999999999999999999999999999999999999999999999988887665443
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=5.2e-16 Score=138.90 Aligned_cols=331 Identities=16% Similarity=0.140 Sum_probs=230.7
Q ss_pred HhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 016128 57 LKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFK 134 (394)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 134 (394)
...|++++|.+++.++.. +.+...|.+|...|-+.|+.+++...+-..-..... |...|..+.....+.|++++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHH
Confidence 334777777777777654 445666777777777777777777665444443322 56677777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCchHHHHHHHHhh
Q 016128 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA----LISMYMKCGQPSWARRFFDQFE 210 (394)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~ 210 (394)
.|.+.++.. +++...+---+..|-+.|+...|...+.++.....+.|..-+.. .++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777653 44555555566667777777777777777776654333333322 3445556666677777777654
Q ss_pred cC---CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC---------------------------CCCCHhhHHHHHHH
Q 016128 211 IK---PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK---------------------------VKPNSASFVAVLSA 260 (394)
Q Consensus 211 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~ 260 (394)
.. ..+...++.++..+.+..+++.+......+.... ..++... ..+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 43 2334446777778888888888877777766511 2222222 122233
Q ss_pred HHccCCHHHHHHHHHHchhcCC--CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----CChhhHHHHHHHHHhcCCc
Q 016128 261 CGHAGHVDKALQIFTMMDDDFG--LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----PTVSVYHSLLGACWCHLNS 334 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 334 (394)
+...+..+....+....... . ..-+...|.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44455555555555555554 4 344577899999999999999999999999987 2333899999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCC
Q 016128 335 DLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISA 391 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 391 (394)
++|++.|++++...|.+..+...|...+.+.|+.++|.+.++.+..-+-..-+++.|
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999987433333355555
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=2.8e-19 Score=150.14 Aligned_cols=259 Identities=18% Similarity=0.223 Sum_probs=112.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016128 118 SMISGFSQLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196 (394)
Q Consensus 118 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (394)
.+...+.+.|++++|++++++......+|+ ...|..+...+...++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 457778888999999998866544432333 344445556667788899999999988877643 56667777777 688
Q ss_pred CCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 016128 197 GQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
+++++|.++++..-...+++..+..++..+...++++++.++++.+.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988765555777778888999999999999999999987543 34577788888899999999999999999
Q ss_pred HchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 276 MMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTV-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+..+. .+.|......++..+...|+.+++.++++.... |+. ..+..+..++...|++++|+..++++.+..|.|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99863 233577888999999999999998888777655 333 4888999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.....++.++...|+.++|.++.+++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887654
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.6e-15 Score=123.75 Aligned_cols=173 Identities=18% Similarity=0.122 Sum_probs=97.0
Q ss_pred hhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhc--CC-------------------------hhHHHHHHHHhcc
Q 016128 22 ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC--GC-------------------------LPCAHNVFQELKG 74 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-------------------------~~~A~~~~~~~~~ 74 (394)
..+|.++.+--+|+.|.+.|.+.+..+-..|++..+-. .+ -+-|. ++-+..
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~- 203 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETL- 203 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhc-
Confidence 34566677777777777766665555544444432211 10 01111 222222
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV 154 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 154 (394)
+.+..+|.++|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-. .-.++..+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 3445566666666666666666666666666655555666666666543321 125556666666666666666666
Q ss_pred HHHhhccchhhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 155 LSACADLSALKL----GKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 155 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 666666665543 3455556666666666666666666666555553
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.8e-15 Score=124.64 Aligned_cols=339 Identities=12% Similarity=0.131 Sum_probs=248.7
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSM 119 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 119 (394)
|.+..++..+|.++++....+.|.+++++... +.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 56778999999999999999999999998875 4677889988866543322 7899999999999999999999
Q ss_pred HHHHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH-HHHHHHHHHH----cCCC----CCHHHH
Q 016128 120 ISGFSQLGMRFE----AFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL-GKETHGHVIR----ADLN----KDESMA 186 (394)
Q Consensus 120 ~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~ 186 (394)
+.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..+. .+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998865 56778889999999999999999999999888754 4444444432 2222 245666
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhcC------CCCh---hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 187 TALISMYMKCGQPSWARRFFDQFEIK------PDDP---AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
...+..|.+..+.+-|.++-.-+... +++. ..|..+....++....+.....|+.|.-.-+.|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 77788888888988888887765443 3332 23677888889999999999999999988888999999999
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC-c--------HHH-----HHHHH-------HhCCC-
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG-R--------LDE-----ARELI-------RELPE- 315 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--------~~~-----a~~~~-------~~~~~- 315 (394)
+++....|.++-.-++|..+..- |..........+...+++.. . +.. |..++ .++..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99999999999888888887654 54333333333444443322 0 000 11111 11222
Q ss_pred -CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhC---CCCC--chHHHHHHHHhhcCCcccHHHHHHHhhhcccccc
Q 016128 316 -PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME---PENP--TPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKL 386 (394)
Q Consensus 316 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 386 (394)
-.....+.++..+.+.|..++|.+++..+...+ |..| .+...+.+.-.+.++...|..+++-|...+...-
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 222266677777889999999999999886644 4333 2344566667778889999999999977666443
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=1.3e-14 Score=127.54 Aligned_cols=280 Identities=11% Similarity=0.012 Sum_probs=193.1
Q ss_pred cCChhHHHHHHHHhccC-CChhH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHccCCHHHHHH
Q 016128 59 CGCLPCAHNVFQELKGS-RNILT-WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWN--SMISGFSQLGMRFEAFK 134 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~~-~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~ 134 (394)
.|+++.|++.+...... +++.. |........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58999999888876642 22333 333344457889999999999988875 44543322 33667888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCchHHHHHHH
Q 016128 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES-------MATALISMYMKCGQPSWARRFFD 207 (394)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~ 207 (394)
.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999888764 3356777888888888999999999999888876543221 22233333334444556666666
Q ss_pred HhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC
Q 016128 208 QFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK 286 (394)
Q Consensus 208 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (394)
.+... +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~ 327 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDT 327 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCC
Confidence 66443 556777777888888888888888888877763 4444322 22333445778888888777765 34455
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
+..+..+.+.+.+.|++++|.+.|+...+ |+...+..+..++.+.|+.++|.+++++...+
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677777888888888888888887776 66667777778888888888888888777654
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=2.9e-14 Score=123.58 Aligned_cols=370 Identities=12% Similarity=0.083 Sum_probs=298.0
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHH
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMM 89 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~ 89 (394)
.||..-.+.|.+.+.++-|+.+|...++.. +-+..+|......--..|..+.-..+|++... +.....|-...+.+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 567777778888888888888888888654 66777888877777778888888888888775 345566777777788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHH
Q 016128 90 LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKE 169 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 169 (394)
..|+...|..++....+.... +...|-.-+.....+.++++|..+|.+.... .|+...|.--+...--.+..++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 889999999999888887444 6778888888888899999999999888764 5677777766666667788899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 016128 170 THGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
++++.++.- +.-...|..+...+-+.++.+.|...|..=... |..+..|-.|...--+.|+.-.|..++++..-.+..
T Consensus 673 llEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 673 LLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 998887763 334567777888888888999998888775554 666777888888888888999999999998877644
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGAC 328 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 328 (394)
+...|...|+.-.+.|..+.|..+..+..+ .++.+...|..-|....+.++--.....+++.. .|..+.-.+...+
T Consensus 752 -~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dphVllaia~lf 827 (913)
T KOG0495|consen 752 -NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDPHVLLAIAKLF 827 (913)
T ss_pred -cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc-CCchhHHHHHHHH
Confidence 778888889988999999999999888877 666777788887877777777667777776665 4555777778888
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCC
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAG 392 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 392 (394)
....++++|.+.|.++++.+|++..+|..+...+.+.|.-++-.+++++.... .|..|..|.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~ 889 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHH
Confidence 88999999999999999999999999999999999999999999999888754 566676664
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.3e-15 Score=135.80 Aligned_cols=364 Identities=15% Similarity=0.139 Sum_probs=205.3
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLN 91 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~ 91 (394)
|-.+.+++-..|+++.|...|-+..+.........+--+..++.+.|+++.+...|+++.. +.+..+...|...|+..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 4445555556666666666665555444221233444555666666666666666666543 23334444444555444
Q ss_pred C----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHhhccch
Q 016128 92 G----RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKM----QSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 92 ~----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+ ..+.|..++.+..+.- +.|...|-.+...+....-+. ++.+|... ...+-.+.+...|.+...+...|+
T Consensus 390 ~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 390 AKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 3 3344444444444332 124555555555444433222 24444432 233334555666666666666777
Q ss_pred hhHHHHHHHHHHHc---CCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHhhcC----------------------
Q 016128 164 LKLGKETHGHVIRA---DLNKD------ESMATALISMYMKCGQPSWARRFFDQFEIK---------------------- 212 (394)
Q Consensus 164 ~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------- 212 (394)
++.|...|...... ...++ .++-..+..++-..++.+.|.+.|..+...
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcH
Confidence 77777666666543 11111 112222444444455555555555554432
Q ss_pred -------------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHhhHHHHHHHHHc------------cCC
Q 016128 213 -------------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-KVKPNSASFVAVLSACGH------------AGH 266 (394)
Q Consensus 213 -------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~ 266 (394)
..++..++.+...+.+...+..|.+-|....+. ...+|..+...|.+.|.. .+.
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 223333444444444444444444444333322 112455555555554432 234
Q ss_pred HHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 267 VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P-TVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
.++|+++|.++.+ .-+.+...-|.+.-.++..|++.+|..+|.++.+ . ...+|-.+..+|...|++-.|++.|+.
T Consensus 628 ~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777775 3445666777777778888888888888888877 2 223888888888888888888888888
Q ss_pred HHhhC--CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 344 LQEME--PENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 344 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..+.. .+++.+...|+.++.+.|++.+|.+.+......
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 87744 456677888888888888888888877766654
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2.4e-14 Score=119.60 Aligned_cols=358 Identities=15% Similarity=0.141 Sum_probs=218.5
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~ 100 (394)
.++++..|+.+|+..+..+ ..+...|-..+.+-.++..+..|..++++... -|- ...|--.+..--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3456666777777766554 44555555555555555555555555555432 111 12222222222334455555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh----------------
Q 016128 101 FEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL---------------- 164 (394)
Q Consensus 101 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---------------- 164 (394)
|++-.+- .|+..+|++.++.-.+.+..+.|..+|++.+- +.|+..+|--....-.+.|..
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 5544443 44555555555555555555555555554443 234444444444444444444
Q ss_pred ---------------------hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCchHHHHHH--------H-HhhcCC
Q 016128 165 ---------------------KLGKETHGHVIRADLNK-DESMATALISMYMKCGQPSWARRFF--------D-QFEIKP 213 (394)
Q Consensus 165 ---------------------~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~--------~-~~~~~~ 213 (394)
+.|.-+|+-.++.-... ....|..+...--+.|+.....+.. + .+..+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 44444444444331111 1233333333333334433332221 1 233447
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh--hHHHH----HH-HH---HccCCHHHHHHHHHHchhcCCC
Q 016128 214 DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA--SFVAV----LS-AC---GHAGHVDKALQIFTMMDDDFGL 283 (394)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l----~~-~~---~~~~~~~~a~~~~~~~~~~~~~ 283 (394)
.|-++|--.+..-...|+.+...++|++.... ++|-.. .|... |+ +| ....+.+.+.++++...+ -+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hc
Confidence 78888888888888899999999999999875 455321 11111 11 11 356788999999998886 44
Q ss_pred CCCHhhHHHHHH----HHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 284 KPKQEHFGCMVD----LLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 284 ~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
+....||..+-- .-.++.+...|.+++...+. |...+|...|..-.+.++++.+..+|++.++.+|.+..+|..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 445556655433 33578899999999998887 888899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcccHHHHHHHhhhccccccCC
Q 016128 358 LSNIYAGLGRWEDVGRIRQMINDRQLTKLPG 388 (394)
Q Consensus 358 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 388 (394)
.+..-...|+++.|..+|+.+.+...-.-|.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 9999999999999999999988765433333
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.8e-15 Score=125.82 Aligned_cols=343 Identities=13% Similarity=0.078 Sum_probs=242.0
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCc----hHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHHHHhcCCHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSD----TMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~ 95 (394)
+.+.+++..|+++|+..+..-...+ ..+.+.+.-.+.+.|.+++|+..|+...+ .|+..+--.|+-++..-|+-+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHH
Confidence 4456677777777776665432222 23445555567778999999999988654 677766444555555678888
Q ss_pred HHHHHHHHHHhcCCCC------------C---------------------------------------------------
Q 016128 96 KAMELFEGLAHEGFKP------------D--------------------------------------------------- 112 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p------------~--------------------------------------------------- 112 (394)
+..+.|.+|..-...| +
T Consensus 327 kmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 8888888887642222 0
Q ss_pred ----HHHHHH--------HHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---------------------HHHHHH----
Q 016128 113 ----PATWNS--------MISGFSQLGMRFEAFKLFEKMQSTGMVPSLK---------------------CVTSVL---- 155 (394)
Q Consensus 113 ----~~~~~~--------l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---------------------~~~~l~---- 155 (394)
...+.- -..-|.++|+++.|++++.-+.+..-..-.. .|....
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 000000 0123567788888888877665432111111 111000
Q ss_pred -----------HHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHH
Q 016128 156 -----------SACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMI 223 (394)
Q Consensus 156 -----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~ 223 (394)
+.....|++++|.+.+++.+..+.......|+ +.-.+-..|+.++|+.+|-++... ..+......+.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qia 565 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIA 565 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 01112577888888888887765444444444 334566778899999988776433 34666677788
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcH
Q 016128 224 SGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRL 303 (394)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (394)
..|-...+...|++++-+.... ++.|+..++.|...|-+.|+-.+|.+.+-.--+ -++.+..+..-|...|....-+
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHH
Confidence 8888899999999999877654 556888999999999999999999887766544 5667888889999999999999
Q ss_pred HHHHHHHHhCC--CCChhhHHHHHHHH-HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 304 DEARELIRELP--EPTVSVYHSLLGAC-WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 304 ~~a~~~~~~~~--~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
++++.+|++.. .|+..-|..++..| .+.|++++|.++|+......|.+..++..|++.+...|-
T Consensus 643 ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999765 49999998888655 568999999999999999999999999999999887764
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.1e-15 Score=132.73 Aligned_cols=355 Identities=14% Similarity=0.117 Sum_probs=243.0
Q ss_pred CCCCChHHH--HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC----ChhHHHHHHHHhcc--CCC
Q 016128 6 SDEPNSVTF--ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG----CLPCAHNVFQELKG--SRN 77 (394)
Q Consensus 6 g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~--~~~ 77 (394)
+..|+.+++ --|.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+... +.|
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 445555333 346677888999999999999988876 667778888888887775 56677777776654 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCC-----
Q 016128 78 ILTWNTMIAGMMLNGRSEKAMELFEGLA----HEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST---GMV----- 145 (394)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~----- 145 (394)
...|-.+...+-...-+. ++..|.... ..+-.+.+...|.+...+...|++++|...|.+.... ...
T Consensus 414 ~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 666666666655443333 355554433 3444566777777777777778888777777776543 111
Q ss_pred -CCHHHHHHHHHHhhccchhhHHHHHHHHHHHcC---------------------------------CCCCHHHHHHHHH
Q 016128 146 -PSLKCVTSVLSACADLSALKLGKETHGHVIRAD---------------------------------LNKDESMATALIS 191 (394)
Q Consensus 146 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~ 191 (394)
++..+--.+..+.-..++.+.|.+.|..+.+.. ...++..+..+..
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 121122223333334445555555555444321 1234455555566
Q ss_pred HHHHcCCchHHHHHHHHhhcCC---CChhhHHHHHHHHhh------------cCChhhHHHHHHHHHHcCCCCCHhhHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIKP---DDPAFWNAMISGYGR------------NGEYESAVEIFDLMQQEKVKPNSASFVA 256 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (394)
.+.+..++..|.+-|+.+...+ +|+.+.-.|.+.|.+ .+..++|+.+|.+.++.... |...-+-
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 6666667777777666654441 233333444554432 34578899999999887533 7788888
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----CChh-hHHHHHHHHHhc
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~l~~~~~~~ 331 (394)
+...++..|++..|..+|.+..+. ......+|-.+..+|..+|++..|+++|+...+ .+.. +...|.+++.+.
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 888999999999999999999874 334556888899999999999999999998765 3444 999999999999
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
|++.+|.+.+..+....|.++.....++.+..+.
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999999999999999999998877777766554
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.4e-14 Score=127.27 Aligned_cols=281 Identities=10% Similarity=0.040 Sum_probs=215.8
Q ss_pred hHhHHHHHHHHHHHHhhhcCCchHHHHHH-HHHHHhcCChhHHHHHHHHhcc-CCChhHHH--HHHHHHHhcCCHHHHHH
Q 016128 24 LLYLQFGRQVHGLTLKIEKQSDTMIGTAL-VDMYLKCGCLPCAHNVFQELKG-SRNILTWN--TMIAGMMLNGRSEKAME 99 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~--~ll~~~~~~~~~~~a~~ 99 (394)
.|+++.|.+......+.. +++..+..+ .....+.|+++.|...+.++.+ .|+...+. .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 478888887777654432 233333333 4445789999999999999876 45554333 33678889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHhhccchhhHHHHHHH
Q 016128 100 LFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK-------CVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 100 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
.++++.+.... ++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999988644 78889999999999999999999999999876543221 22333333334445555666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh
Q 016128 173 HVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252 (394)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (394)
.+-+. .+.++.....+...+...|+.++|.+.+++..+.++++.. .++.+....++.+++++..+...+... -|..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~ 329 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPL 329 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHH
Confidence 65333 2457888889999999999999999999998876666533 234444566999999999999988743 3667
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
.+..+...|...+++++|.+.|+...+ ..|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999999999999999985 47999999999999999999999999998764
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.5e-17 Score=139.76 Aligned_cols=255 Identities=20% Similarity=0.217 Sum_probs=64.1
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCH
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIE-KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRS 94 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~ 94 (394)
...+.+.|+++.|.++++...... .+.+...|..+.......++++.|+..++++.. +.+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444555555555555554333222 233444444444455555555555555555543 1223334444444 455555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccchhhHHHHHHHH
Q 016128 95 EKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG-MVPSLKCVTSVLSACADLSALKLGKETHGH 173 (394)
Q Consensus 95 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 173 (394)
++|.++++...+. .+++..+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544433 2344444455555555555555555555544321 223444444555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh
Q 016128 174 VIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252 (394)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (394)
..+..+ .+..+...++..+...|+.+++..+++..... +.++..|..+..++...|+.++|+..|++..+.. +.|+.
T Consensus 172 al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 555431 13444444555555555555544444444333 3444444555555555555555555555554432 22444
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
....+..++...|+.++|..+.+++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4445555555555555555544443
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=7.5e-14 Score=123.34 Aligned_cols=285 Identities=11% Similarity=-0.015 Sum_probs=199.9
Q ss_pred HhcCChhHHHHHHHHhcc-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 016128 57 LKCGCLPCAHNVFQELKG-SRNI-LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFK 134 (394)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 134 (394)
...|+++.|.+.+.+... .|+. ..+-....++.+.|+++.|.+.+++..+....+...........+...|++++|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456999999999988765 3443 33444467778889999999999998776323222344445788889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCch----HHHHHHH
Q 016128 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY---MKCGQPS----WARRFFD 207 (394)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~----~a~~~~~ 207 (394)
.++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..+ ...+.++
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999875 3366778889999999999999999999999887543332211111221 2222222 3333333
Q ss_pred HhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh--H-HHHHHHHHccCCHHHHHHHHHHchhcCCC
Q 016128 208 QFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS--F-VAVLSACGHAGHVDKALQIFTMMDDDFGL 283 (394)
Q Consensus 208 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (394)
..... +.++..+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+. .
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 33321 3477888888999999999999999999998863 34332 1 11112223457788888888877763 2
Q ss_pred CCCH--hhHHHHHHHHHhcCcHHHHHHHHH--hCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 284 KPKQ--EHFGCMVDLLGRSGRLDEARELIR--ELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 284 ~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
+-|+ ....++...+.+.|++++|.+.|+ ...+ |+...+..+...+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334 566788888889999999999998 3432 7777777888888999999999999888755
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=4.6e-13 Score=116.35 Aligned_cols=367 Identities=12% Similarity=0.032 Sum_probs=276.5
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-------CCChhHHHHHHHHHHh
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-------SRNILTWNTMIAGMML 90 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~ll~~~~~ 90 (394)
.-++++..-++.|..++....+. ++-+..+|.+-...--..|+.+...+++++-.. .-+...|-.=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 33455556666666666665543 355666666666666666666666666665332 1234445555555556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 91 NGRSEKAMELFEGLAHEGFKPD--PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
.|..-.+..+......-|+.-. ..||..-...|.+.+.++-|..+|....+. ++-+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 6666666666666666655432 446777777777778888888888777765 3345556666666666777788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 016128 169 ETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 247 (394)
.+++++...- +.....+......+-..|+...|..++.+.-.. |.+...|-.-+.......+++.|..+|.+....
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 8888887764 335566666777778889999999999886554 667778999999999999999999999998774
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHH
Q 016128 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSL 324 (394)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l 324 (394)
.|+...|..-+..-.-.+..++|.+++++..+ .++.-...|-.+...+.+.++.+.|.+.|..-.. |+.. .|-.|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 67788887777777778999999999999987 4444567888889999999999999999988877 7777 88888
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCCC
Q 016128 325 LGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAGI 393 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 393 (394)
...--+.|+.-+|..++++..-.+|.+...|...+.+-.+.|..+.|..++.+.... -|+.|.-|.+
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaE 792 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAE 792 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHH
Confidence 888888999999999999999999999999999999999999999999998887764 3666766653
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.1e-15 Score=124.50 Aligned_cols=360 Identities=12% Similarity=0.078 Sum_probs=253.9
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHHHHh
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSD-TMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAGMML 90 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~~~~ 90 (394)
+-..-..|.++|.+++|++.|.+.++. .|+ +.-|.....+|...|+|+++.+.-.+..+ .|+ +..+..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 344455688899999999999999976 455 88889999999999999999888777664 333 2334444455555
Q ss_pred cCCHHHHH----------------------HHHHHH---------Hhc--CCCCCHHHHHHHHHHHHc------------
Q 016128 91 NGRSEKAM----------------------ELFEGL---------AHE--GFKPDPATWNSMISGFSQ------------ 125 (394)
Q Consensus 91 ~~~~~~a~----------------------~~~~~m---------~~~--g~~p~~~~~~~l~~~~~~------------ 125 (394)
.|++++|+ ++++.. .+. .+-|+.....+....+..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 55555443 222211 111 122333333333222211
Q ss_pred -------------cC---CHHHHHHHHHHHHh-CCCCCC-----------HHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 126 -------------LG---MRFEAFKLFEKMQS-TGMVPS-----------LKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 126 -------------~~---~~~~a~~~~~~m~~-~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
.+ .+..|.+.+.+-.. ....++ ..+.......+.-.|+.-.+.+-|+..++.
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 12222222222110 001111 112222222344568888999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHH
Q 016128 178 DLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (394)
...++. .|-.+..+|....+.++-.+.|...... |.++++|..-...+.-.+++++|..=|++...... -+...|..
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQ 433 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQ 433 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHH
Confidence 755433 3667778899999999999999987765 78899999999999999999999999999988642 25667777
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh---------hHHHHH
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS---------VYHSLL 325 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~---------~~~~l~ 325 (394)
+..+..+.+++++++..|++.++ .++..+.+|+.....+...++++.|.+.|+..++ |+.. +.-.++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 77777889999999999999987 6777889999999999999999999999998876 4411 122222
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
..- -.+++..|+.+++++.+++|....+|..|+....+.|+.++|+++|++-..
T Consensus 512 ~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 512 VLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 248999999999999999999999999999999999999999999987543
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=3.2e-14 Score=125.69 Aligned_cols=286 Identities=9% Similarity=-0.005 Sum_probs=211.2
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCch-HHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChh--HHHHHHHHHHhcCCHHHHH
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDT-MIGTALVDMYLKCGCLPCAHNVFQELKG-SRNIL--TWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~~ll~~~~~~~~~~~a~ 98 (394)
..|+++.|.+.+....+.. |++ ..+-....+..+.|+.+.|.+.+.+..+ .|+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4689999999998776653 443 3344556778888999999999999754 35543 3444588889999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHh---hccchhhHHHHHHHHH
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVT-SVLSAC---ADLSALKLGKETHGHV 174 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 174 (394)
..++.+.+..+. +..++..+...+...|++++|.+++..+.+.++. +...+. .-..++ ...+..+...+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998643 6788899999999999999999999999988654 333332 222222 2223333334455555
Q ss_pred HHcCC---CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChh-h--HHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 016128 175 IRADL---NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPA-F--WNAMISGYGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 175 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
.+... +.+...+..+...+...|+.++|.+.+++..+..++.. . ...........++.+.+.+.+++..+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 54432 13788899999999999999999999999877533333 1 1222222344578888999998887763 2
Q ss_pred CCH--hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 249 PNS--ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 249 ~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
-|+ ....++...+.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 244 55668899999999999999999953332 557899889999999999999999999998753
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.2e-14 Score=116.13 Aligned_cols=288 Identities=13% Similarity=0.067 Sum_probs=207.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHhhccchh
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM--VPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~ 164 (394)
++-...+.++++.=.+.....|+.-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-.....+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444455666666666666667665555555555666677788888888888876621 12455666555443222221
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
. .+.+-...--+--+.|...+.+-|.-.++.++|..+|++..+. |.....|+.+..-|...++...|++-++...
T Consensus 316 s----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 316 S----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred H----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1 1111111111224556677778888889999999999987665 5556669999999999999999999999998
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-CCh--hh
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-PTV--SV 320 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~--~~ 320 (394)
+-. +.|-..|-.|.++|...+-..=|.-+|++... --+.|+..|.+|..+|.+.++.++|++.|.+... .|. ..
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 875 34888999999999999999999999999875 3455788999999999999999999999999887 333 38
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhh-------CCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEM-------EPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+..|...+-+.++.++|...|++.++. +|....+..-|+.-+.+.+++++|..........
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999999999999999999999988872 2333344455677778888888887766555443
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.8e-13 Score=121.78 Aligned_cols=368 Identities=11% Similarity=0.051 Sum_probs=279.0
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHH
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIA 86 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~ 86 (394)
|.....-.....+...|+++.|.+++.++++.. +.....|..|...|-+.|+.+++...+-.... +.|...|..+..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 334444444444555699999999999999988 77889999999999999999999988876543 567788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHhhccc
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVT----SVLSACADLS 162 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~ 162 (394)
...+.|.+++|.-.|.+.++... ++...+-.-+..|-+.|+...|...|.++.....+.|..-+. ..+..+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999743 355555666788999999999999999998864322333233 3455566677
Q ss_pred hhhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-----------------C-----------
Q 016128 163 ALKLGKETHGHVIRA-DLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-----------------P----------- 213 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------~----------- 213 (394)
+-+.|.+.++..... +-..+...++.++..+.+..+++.|.......... +
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 778888888887662 22345667788899999999999988877665441 0
Q ss_pred -CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhH
Q 016128 214 -DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV--KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHF 290 (394)
Q Consensus 214 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (394)
.+... -.+.-++...+..+....+.....+..+ .-+...|.-+..++...|.+.+|+.+|..+... ..-.+..+|
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw 452 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVW 452 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhh
Confidence 01111 1233445566666666666777777663 335567889999999999999999999999876 334457789
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC---------CCCCchHHHH
Q 016128 291 GCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME---------PENPTPFVIL 358 (394)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~l 358 (394)
..+.++|...|.+++|.+.|+.... |+.. .--.|...+.+.|+.++|.+.++.+..-+ +++.......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 9999999999999999999999887 7777 77788888999999999999998865322 2233445566
Q ss_pred HHHHhhcCCcccHHHHHHHhhh
Q 016128 359 SNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 359 ~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...+.+.|+.++-+.....|.+
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 6778888998886666665554
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.3e-13 Score=114.87 Aligned_cols=326 Identities=14% Similarity=0.083 Sum_probs=242.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATW--NSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~l~ 120 (394)
..|...+-.....+-+.|..+.|+..|..... .-+..|.+.+...--..+.+.+..+ .. |...|.... -.+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-RYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHh-cCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHHHHH
Confidence 44555555555666778899999999988773 2233344333333222333332222 21 122121111 2244
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCC
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN--KDESMATALISMYMKCGQ 198 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 198 (394)
.++....+.++++.-.+.....|++-+...-+....+.....|+++|+.+|+++.+.++- .|..+|..++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 566666788888888888888888766666666667778889999999999999987421 266777766543222111
Q ss_pred chH-HHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 199 PSW-ARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 199 ~~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
..- |..++ .+. .-.+.|...+.+-|.-.++.++|+..|++..+.+.. ....|+.+.+-|....+...|+.-++..
T Consensus 315 Ls~LA~~v~-~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVS-NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHH-Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111 11111 122 356677788888899999999999999999987533 5677888899999999999999999999
Q ss_pred hhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 278 DDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
.+ -.+.|-..|-.|.++|.-.+.+.-|+-+|++... |++. .|.+|..+|.+.++.++|+..|.++...+..+...
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 86 4466788999999999999999999999999987 7777 99999999999999999999999999999888899
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 355 FVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 355 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+..|+.+|.+.++.++|...+++..+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.3e-14 Score=126.13 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (394)
.+.+|.++.++|.-.++.+.|++.|++..+. |....+|+.+..-+.....+|.|...|+..+....+ +-..|.-+...
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~v 498 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTV 498 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhh
Confidence 3444555555555555555555555544433 223334444444444455555555555444332111 12233334444
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDL 336 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~ 336 (394)
|.+.++++.|+-.|+.+.+ +.| +......+...+.+.|+.++|++++++... |... .--..+..+...+++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 4555555555555554442 222 233334444444455555555555554443 2222 22223333444455555
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 337 GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
|+..++++++.-|.+...+..++..|.+.|+.+.|+.-|--|.
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 5555555555555555555555555555555555554444443
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-12 Score=112.16 Aligned_cols=251 Identities=13% Similarity=0.028 Sum_probs=167.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARR 204 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (394)
..+++.+..++++...+. .++....+..-|.++...|+..+-..+-.++++.- +..+.+|-++.-.|...|+.++|++
T Consensus 256 ~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHH
Confidence 334444444444444433 12333333333444444444444444444444432 2244555555656666677777777
Q ss_pred HHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCC
Q 016128 205 FFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGL 283 (394)
Q Consensus 205 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (394)
+|.+...- +.-...|-.+...|+-.|..++|+..+...-+.- +-....+--+.--|.+.++.+.|.++|.+... -.
T Consensus 334 y~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~ 410 (611)
T KOG1173|consen 334 YFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IA 410 (611)
T ss_pred HHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cC
Confidence 77665443 2223446677777777777777777766665531 11112222334456677888888888888874 34
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 284 KPKQEHFGCMVDLLGRSGRLDEARELIRELPE---------P-TVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
+.|+.+.+.+.-.....+.+.+|..+|+.... + -.++++.|..++.+.+.+++|+..+++++.+.|.++.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 55677888888777788999999999987763 2 2237999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 354 PFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
++.+++-.|...|+++.|+..|.+...
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1e-12 Score=107.86 Aligned_cols=282 Identities=13% Similarity=0.054 Sum_probs=204.0
Q ss_pred cCChhHHHHHHHHhccCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 016128 59 CGCLPCAHNVFQELKGSR--NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF 136 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 136 (394)
.|++.+|+++..+-.+.. ....|..-..+.-+.|+.+.+-.++.+..+....++....-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 588899988888766532 233455555666778888999888888888755556677777778888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 137 EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES-------MATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 137 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
.++.+.+ +-+........++|.+.|++.....++..+.+.+.-.+.. ++..++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888765 3356677888888889999999999999888888665543 3444555444444555555566666
Q ss_pred hcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh
Q 016128 210 EIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE 288 (394)
Q Consensus 210 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (394)
+.. ..++..-..++.-+.+.|+.++|.++..+..+.+..|. ... .-.+.+.++.+.-++..+.-.+. .+.++.
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ--HPEDPL 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh--CCCChh
Confidence 555 44566677778888888888888888888887766555 222 22445667777777777666653 333446
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
.+.+|...|.+.+.|.+|...|+...+ |+..+|+.+..++.+.|++.+|.+..++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 778888888888888888888887766 66668888888888888888888888877653
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4.1e-13 Score=107.03 Aligned_cols=284 Identities=11% Similarity=0.101 Sum_probs=163.6
Q ss_pred cCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCHHHHH
Q 016128 59 CGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD---PATWNSMISGFSQLGMRFEAF 133 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~ 133 (394)
+++.++|.++|-+|.. +.+..+--+|.+.|-+.|..|.|+++-+.+.+..--+. ..+...|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4666677777766663 12223344566666667777777777666665411111 223344556666677777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 134 KLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKD----ESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 134 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
.+|..+.+.+ .--......|+..|-...+|++|.++-+++.+.+..+. ...|.-|...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777766643 22344556666777777777777777776666554332 234555666666667777777777765
Q ss_pred hcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh
Q 016128 210 EIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE 288 (394)
Q Consensus 210 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (394)
.+. |..+..--.+.+.+...|+++.|++.++...+++..--+.+...|..+|...|+.++...++..+.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 543 33333333455666777777777777777777655545566667777777777777777777776654 23333
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHH-hCCC-CChhhHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 016128 289 HFGCMVDLLGRSGRLDEARELIR-ELPE-PTVSVYHSLLGACWC---HLNSDLGEEMAMKLQE 346 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~-~~~~-~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 346 (394)
.-..+.+.-....-.+.|...+. ++.. |+...+..++..-.. .|...+....++.+..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33334343333334444444443 3333 555566666655443 2334444455555544
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.7e-14 Score=125.48 Aligned_cols=285 Identities=16% Similarity=0.041 Sum_probs=205.7
Q ss_pred CChhHHHHHHHHhcc-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 016128 60 GCLPCAHNVFQELKG-SRNI-LTWNTMIAGMMLNGRSEKAMELFEGLAHEGF--KPDPATWNSMISGFSQLGMRFEAFKL 135 (394)
Q Consensus 60 g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~ 135 (394)
-+..+|..+|.+++. .+|. .....+..+|...+++++|.++|+.+.+... .-+...|.+.+-.+-+. -++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 356788888888664 2333 4445567888888888888888888877521 11677777776554321 12222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-C
Q 016128 136 F-EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-P 213 (394)
Q Consensus 136 ~-~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~ 213 (394)
+ +.+.+. -+-.+.+|.++.++|.-+++.+.|.+.|++.+..+. ....+|+.+.+-+.....+|.|...|+..... |
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233332 244567888888888888899999988888887652 26778888888888888888888888886653 4
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHH
Q 016128 214 DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCM 293 (394)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (394)
++-..|--+.-.|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.|+|+.+++++..- -+.|+-.--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 44555666777888888899998888888876533 5666777777888888888998888888743 12233333444
Q ss_pred HHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 294 VDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
+..+...+++++|+..++++.+ |+.. ++..+...|.+.|+.+.|+.-|.-+.+++|....
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5667778888899888888887 7777 8888888888888888888888888888876544
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=4.6e-13 Score=106.75 Aligned_cols=293 Identities=12% Similarity=0.103 Sum_probs=221.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHhhccchhhHH
Q 016128 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG-MVPSL--KCVTSVLSACADLSALKLG 167 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a 167 (394)
+++.++|.++|-+|.+.... +..+.-+|.+.|.+.|..++|+++.+.+.++. .+-+. .....|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57889999999999986322 45556678899999999999999999998752 21111 2344566778899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCCh------hhHHHHHHHHhhcCChhhHHHHHHH
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDP------AFWNAMISGYGRNGEYESAVEIFDL 241 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (394)
+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+..+.. ..|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988652 345667789999999999999999999887653322 2366677777788999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh
Q 016128 242 MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS 319 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~ 319 (394)
..+.+.+ ....-..+.+.....|+++.|.+.++.+.++ +...-+.+...|..+|...|+.++....+.++.+ ++..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 9887533 3444456778889999999999999999987 5555567888999999999999999999998887 4444
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh---cCCcccHHHHHHHhhhccccccCC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG---LGRWEDVGRIRQMINDRQLTKLPG 388 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 388 (394)
.-..+...-....-.+.|...+.+-+...| +...+..++..... .|.+.+.+..++.|....++.+|.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 555555554555556777777777666667 55667777776553 355777788888888766655553
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=3.5e-13 Score=112.36 Aligned_cols=365 Identities=12% Similarity=0.091 Sum_probs=220.7
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHH-HHHHHHHHhcCChhHHHHHHHHhcc-CCC------hh
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIG-TALVDMYLKCGCLPCAHNVFQELKG-SRN------IL 79 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~ 79 (394)
..+-.++..|.+.|.......+|+..|+-+++...-|+.... ..+...+.+...+.+|++.++.... -|+ ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 344555666677777788889999999999887766766544 3456678888999999999987654 232 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC------------CCC
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM------------VPS 147 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------------~~~ 147 (394)
..+.+.-.+++.|.++.|+.-|+...+. .|+..+--.|+-++..-|+-++..+.|.+|+.... .|+
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4556666788999999999999998886 67877766667777778899999999999865321 233
Q ss_pred HHHHHHHHH---------------------------------------------------------------Hhhccchh
Q 016128 148 LKCVTSVLS---------------------------------------------------------------ACADLSAL 164 (394)
Q Consensus 148 ~~~~~~l~~---------------------------------------------------------------~~~~~~~~ 164 (394)
....+..+. -+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 332222221 11223444
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH------------------------------------HHcCCchHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMY------------------------------------MKCGQPSWARRFFDQ 208 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~g~~~~a~~~~~~ 208 (394)
+.|.++++-+.+.+...-...-+.|-..+ ...|++++|..++++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 44444444333322111111111110000 011333333333333
Q ss_pred hhcCCCChhhHHHH---HHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC
Q 016128 209 FEIKPDDPAFWNAM---ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP 285 (394)
Q Consensus 209 ~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (394)
... .+...-.+| .-.+-..|+.++|++.|-++..- +..+...+..+...|-...+..+|++++-+... -++.
T Consensus 516 al~--ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 516 ALN--NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHc--CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 332 111111111 11233344455555444443322 122444455555556566666666666665543 4566
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH-HHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL-SNI 361 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~ 361 (394)
|+.+...|...|-+.|+-..|.+.+-+--. |... +...|..-|....-+++++.+|+++.-+.|.. .-|..+ +.+
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc 669 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASC 669 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHH
Confidence 777778888888888888777776555444 5444 77777777777777888999999888787754 555555 455
Q ss_pred HhhcCCcccHHHHHHHhhh
Q 016128 362 YAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~ 380 (394)
+.+.|++++|..+++....
T Consensus 670 ~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 5688999999999988754
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=2.2e-12 Score=105.96 Aligned_cols=288 Identities=11% Similarity=0.078 Sum_probs=229.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHH
Q 016128 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKET 170 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 170 (394)
.|+|.+|+++..+-.+.+-. ....|..-+.+--..|+.+.+-.++.+..+..-.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999998887665 34566677788889999999999999998764355666677778888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCC--CC-------hhhHHHHHHHHhhcCChhhHHHHHHH
Q 016128 171 HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKP--DD-------PAFWNAMISGYGRNGEYESAVEIFDL 241 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (394)
+.++.+.+.. ++.+......+|.+.|++.....++..+.+.+ .+ ..+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9999988744 67788889999999999999999999998762 22 23367777766666666666667776
Q ss_pred HHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh
Q 016128 242 MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS 319 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~ 319 (394)
.... .+.++..-.+++.-+.+.|+.++|.++..+..++ +..|+. .. .-.+.+.++...-++..+.... |+..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6544 4556777788888999999999999999999887 666651 11 2235566777766666665554 6666
Q ss_pred -hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccC
Q 016128 320 -VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLP 387 (394)
Q Consensus 320 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 387 (394)
.+.+|...|.+++.+.+|...|+.+.+..| +...|..++.++.+.|+..+|.++.++....-.+|+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 899999999999999999999998888887 6689999999999999999999999988765544443
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=3.7e-13 Score=110.31 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (394)
....+..+...+...|++++|...+++.... |.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4566677788888888888888888876554 55667788888888889999999999988887643 355677778888
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
+...|++++|...++..............+..+...+...|++++|...+++... |+.. .+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 8888999999999988876422233455677778888999999999999988876 5544 788888999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888888999999999999998887764
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=7.8e-11 Score=99.05 Aligned_cols=352 Identities=12% Similarity=0.104 Sum_probs=221.6
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHHHHhcCCHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAGMMLNGRSEKAME 99 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~ 99 (394)
=.+...+..|+.+++..+..- |.-...|-..+.+--..|++..|.++|++-.+ +|+...|++.++.-.+-+.++.|..
T Consensus 117 Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 117 EMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 334455555555555555432 22222344444444445555555555555433 5555555555555555555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH-------------------------------------HhC
Q 016128 100 LFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKM-------------------------------------QST 142 (394)
Q Consensus 100 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m-------------------------------------~~~ 142 (394)
++++..-. .|++.+|-.....-.+.|+...|..+|+.. .+.
T Consensus 196 IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 196 IYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555443 355555555555555555555444444443 332
Q ss_pred CCCCC--HHHHHHHHHHhhccchhhHHHHH--------HHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 143 GMVPS--LKCVTSVLSACADLSALKLGKET--------HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 143 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
++-+ ...|......--+-|+.....+. ++..++.+ +.|-.++--.+..-...|+.+...++|++...+
T Consensus 274 -~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 274 -IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred -cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 1111 12233333332333443333322 23333333 335566666777777889999999999997765
Q ss_pred -CCChh--hHHHHHHH--------HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH----HHHHHccCCHHHHHHHHHHc
Q 016128 213 -PDDPA--FWNAMISG--------YGRNGEYESAVEIFDLMQQEKVKPNSASFVAV----LSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 213 -~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~ 277 (394)
||-.. .|...|-. -....+.+.+.++|+...+. ++-...||..+ ...-.++.++..|.+++...
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33211 13333222 23568899999999999884 33344555543 34445778999999999998
Q ss_pred hhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC--C
Q 016128 278 DDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN--P 352 (394)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~ 352 (394)
. |.-|...+|...|..-.+.+.++.+..++++..+ |..- +|......-...|+.+.|..+|+-++....-+ .
T Consensus 431 I---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 431 I---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred h---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 7 8889999999999999999999999999999988 5555 89888888888999999999999887754211 2
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..|...+..-...|.++.|..+++++.+.
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 34666777777899999999999998875
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=7.9e-12 Score=114.75 Aligned_cols=263 Identities=10% Similarity=-0.012 Sum_probs=177.2
Q ss_pred CCchHHHHHHHHHHHh-----cCChhHHHHHHHHhcc-CC-ChhHHHHHHHHHH---------hcCCHHHHHHHHHHHHh
Q 016128 43 QSDTMIGTALVDMYLK-----CGCLPCAHNVFQELKG-SR-NILTWNTMIAGMM---------LNGRSEKAMELFEGLAH 106 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~~ 106 (394)
+.+...|...+.+... .+++++|+.+|++... .| +...|..+..++. ..+++++|...+++..+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 4555555555554322 2356788888888775 34 4455665555443 22457889999998888
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHH
Q 016128 107 EGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMA 186 (394)
Q Consensus 107 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 186 (394)
.+.. +..++..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7543 67788888888888899999999999988764 334567777888888899999999999998887644 23333
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHc
Q 016128 187 TALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGH 263 (394)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 263 (394)
..++..+...|++++|...+++.... |.++..+..+..++...|+.++|...+.++... .|+ ....+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 33444566678889999998887543 345566777888888899999999998887654 333 3344455556666
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.| +++...++.+.+.....+....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 66 47777777766543333332223 33445556777776666 66665
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=1.3e-10 Score=103.38 Aligned_cols=290 Identities=12% Similarity=0.070 Sum_probs=190.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhH-HHHHHHHHHh----
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILT-WNTMIAGMML---- 90 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~ll~~~~~---- 90 (394)
....+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+.. .|+... |..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345667889999999999774433 455667788889999999999999999999886 455544 4555555422
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 91 -NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF-EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 91 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
..+.+...++|+++... .|...+...+.-.+..-..+. .+...+..+...|+++ +|+.+-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 23577888899988776 344444333333333322333 3445556666777664 5666666666555555555
Q ss_pred HHHHHHHHc----C----------CCCCH--HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCC
Q 016128 169 ETHGHVIRA----D----------LNKDE--SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGE 231 (394)
Q Consensus 169 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 231 (394)
+++...... + -.|+. .++..+...|-..|++++|..++++.... |..+..|..-...+-+.|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 555554322 1 12333 23455566777888888888888876555 5556678888888888888
Q ss_pred hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhH--------HHHHHHHHhcCcH
Q 016128 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHF--------GCMVDLLGRSGRL 303 (394)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~ 303 (394)
+.+|.+.++..+..... |...-+..+..+.+.|+.++|.+++..+.+. +..|....+ .....+|.+.|++
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888888888776543 6666677777778888888888888887765 433322221 3345677788888
Q ss_pred HHHHHHHHhCC
Q 016128 304 DEARELIRELP 314 (394)
Q Consensus 304 ~~a~~~~~~~~ 314 (394)
..|++.|..+.
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 77776655443
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=2.2e-13 Score=108.73 Aligned_cols=226 Identities=11% Similarity=0.025 Sum_probs=199.6
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhc
Q 016128 151 VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRN 229 (394)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 229 (394)
-+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|-+.|.+..+++.|+.++.+-.+. |.++....-..+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 357889999999999999999998887 456778888999999999999999999987666 66777778888999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
++.++|.++|+...+.. ..+.....++...|.-.++.+-|..+++.+..- |+ .++..|+.+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998874 346777778888888999999999999999886 65 5678899999999999999999988
Q ss_pred HHhCCC----CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 310 IRELPE----PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 310 ~~~~~~----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
|++... |+.. +|-.+.......|++..|.+.|+-+...+|++...++.|+-.-.+.|++++|..+++...+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887765 6665 89999999999999999999999999999999999999999999999999999999987654
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=4.4e-12 Score=116.42 Aligned_cols=263 Identities=13% Similarity=0.044 Sum_probs=187.9
Q ss_pred CHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhh---------ccchhhHHHHHHHHHHH
Q 016128 112 DPATWNSMISGFSQ-----LGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACA---------DLSALKLGKETHGHVIR 176 (394)
Q Consensus 112 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 176 (394)
+...|...+.+... .+++++|+.+|++..+. .|+ ...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55566666555321 23467899999998875 343 445555554433 33558899999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH
Q 016128 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (394)
.+. .+...+..+...+...|++++|...|++.... |.++..+..+...+...|++++|+..+++..+.... +...+.
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 863 47788888888999999999999999997665 666778899999999999999999999999887533 222333
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.++..+...|++++|...+++.... ..+.++..+..+..++...|++++|...++++.. |+.. ..+.+...+...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 4444566689999999999998763 2222455677788889999999999999998765 4444 5666666777777
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
++|...++++.+.....+.........+.-.|+.+.+..+ +++.+.|
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4788877777764422222222255566667777777666 7777654
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.5e-11 Score=99.35 Aligned_cols=309 Identities=11% Similarity=0.038 Sum_probs=230.0
Q ss_pred chHHHHHHHHHHHh--cCChhHHHHHHHHhcc----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHH
Q 016128 45 DTMIGTALVDMYLK--CGCLPCAHNVFQELKG----SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWN 117 (394)
Q Consensus 45 ~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~ 117 (394)
........+.+++. .++...|..++-.+.. +.|+.....+.+.+...|+.++|+..|+..... .|+ .....
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD 270 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMD 270 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHH
Confidence 33333444555544 3555555555544332 467788889999999999999999999988765 332 22333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016128 118 SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCG 197 (394)
Q Consensus 118 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (394)
.-.-.+.+.|+.++...+...+.... .-+...|-.-.......++++.|..+-++.+..+. .+...+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhcc
Confidence 33445677899999888888876542 23444455555556677899999999998887763 35566666677888899
Q ss_pred CchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH-HHH-HccCCHHHHHHHH
Q 016128 198 QPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL-SAC-GHAGHVDKALQIF 274 (394)
Q Consensus 198 ~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~ 274 (394)
++++|.-.|+..... |.+..+|..|+.+|...|.+.+|.-+-+...+. +..+..+.+.+. ..| ....--++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 999999999987665 678899999999999999999998887766554 344666666653 333 2334468899999
Q ss_pred HHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 275 TMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 275 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
+...+ +.|+ ....+.+...+...|..+.+..++++... ||....+.|.+.+...+.+++|++.|..+..++|.+
T Consensus 428 ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88774 4565 45667788889999999999999998876 888899999999999999999999999999999999
Q ss_pred CchHHHHHHH
Q 016128 352 PTPFVILSNI 361 (394)
Q Consensus 352 ~~~~~~l~~~ 361 (394)
..+...|-..
T Consensus 505 ~~sl~Gl~~l 514 (564)
T KOG1174|consen 505 KRTLRGLRLL 514 (564)
T ss_pred hHHHHHHHHH
Confidence 7777666443
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.55 E-value=3.2e-10 Score=100.93 Aligned_cols=369 Identities=12% Similarity=0.039 Sum_probs=255.4
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-C--CC-hhHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-S--RN-ILTWNT 83 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~-~~~~~~ 83 (394)
.=|...|..|.-++...|+++.+.+.|++....- -.....|+.+...|...|.-..|+.+++.... . |+ ...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3477888899999999999999999999887543 45677889999999999999999999987653 2 33 333333
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhc--CC--CCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCC-CCC
Q 016128 84 MIAGMM-LNGRSEKAMELFEGLAHE--GF--KPDPATWNSMISGFSQL-----------GMRFEAFKLFEKMQSTG-MVP 146 (394)
Q Consensus 84 ll~~~~-~~~~~~~a~~~~~~m~~~--g~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~-~~~ 146 (394)
.-+.|. +.+..+++++.-.+.... |. ...+..|..+.-+|..+ ....++++.+++..+.+ ..|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334444 346777777766666552 11 11344555555455422 22356778888887654 234
Q ss_pred CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC----------
Q 016128 147 SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDD---------- 215 (394)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---------- 215 (394)
+...| +.--|+..++++.|.+..++..+.+...+...+..|.-.+.-.+++.+|+.+.+..... +.|
T Consensus 479 ~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333 34446677899999999999999877778888988888888889999999888764332 211
Q ss_pred ----------hhhHHHHHHHHh-----------------------hcCChhhHHHHHHHHH--------HcC--------
Q 016128 216 ----------PAFWNAMISGYG-----------------------RNGEYESAVEIFDLMQ--------QEK-------- 246 (394)
Q Consensus 216 ----------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~-------- 246 (394)
.++...++..+- ..++..++.+..+.+. ..|
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 111111111111 0112222222222210 001
Q ss_pred -CC--CCH------hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--
Q 016128 247 -VK--PNS------ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-- 315 (394)
Q Consensus 247 -~~--~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 315 (394)
+. |+. ..|......+.+.+..++|.-.+.+..+ ..+.....|......+...|..++|.+.|.....
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 01 111 1233455566777788888777777764 4455667788888888999999999999988775
Q ss_pred CChh-hHHHHHHHHHhcCCchHHHH--HHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 316 PTVS-VYHSLLGACWCHLNSDLGEE--MAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
|+.+ +...+...+.+.|+..-|.. ++..+.+.+|.++..|..++.++.+.|+.++|...|......
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8888 99999999999999988888 999999999999999999999999999999999999988764
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=1.6e-12 Score=116.69 Aligned_cols=334 Identities=13% Similarity=0.088 Sum_probs=212.2
Q ss_pred ccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHH
Q 016128 2 KECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTW 81 (394)
Q Consensus 2 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 81 (394)
+.. |+.|+.+||..+|..|+..|+++.|- +|..|.-...+.+...++.++......++.+.+. .|...+|
T Consensus 17 e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep~aDty 86 (1088)
T KOG4318|consen 17 EIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EPLADTY 86 (1088)
T ss_pred HHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CCchhHH
Confidence 456 99999999999999999999999999 9999998888999999999999999999887665 6888999
Q ss_pred HHHHHHHHhcCCHHH---HHHHHHHHH----hcCCCCCHHHH--------------HHHHHHHHccCCHHHHHHHHHHHH
Q 016128 82 NTMIAGMMLNGRSEK---AMELFEGLA----HEGFKPDPATW--------------NSMISGFSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 82 ~~ll~~~~~~~~~~~---a~~~~~~m~----~~g~~p~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~m~ 140 (394)
..|+.+|...||... +.+.++... ..|+.....-+ ...+......|-++.+++++..+.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999998654 333222222 22332211111 112233334455566666655554
Q ss_pred hCC-CCCCHHHHHHHHHHhhcc-chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCCh
Q 016128 141 STG-MVPSLKCVTSVLSACADL-SALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK--PDDP 216 (394)
Q Consensus 141 ~~~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~ 216 (394)
... ..|... .++-+... ..+++-..+.+...+ .|+..++..++++-...|+.+.|..++.+|... |-++
T Consensus 167 vsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 167 VSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred cccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 321 111111 23333322 233333333333333 588999999999999999999999999999887 5556
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHH
Q 016128 217 AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGC 292 (394)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 292 (394)
..|-.|+-+ .++...++.+++-|...|+.|+..|+...+..+.+.|....+.. +...+ ...+..
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---------~sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---------GSQLAHGFTAAVRSA 307 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc---------ccchhhhhhHHHHHH
Confidence 656666555 88888999999999999999999999988888877554211111 22222 222333
Q ss_pred HHHHHHhcCcHHH--HHHHHHhCCC-----CC--hhhHHHHHHHHHhcCCchHHHHHHHHHHh----hCCCCCchHHHHH
Q 016128 293 MVDLLGRSGRLDE--ARELIRELPE-----PT--VSVYHSLLGACWCHLNSDLGEEMAMKLQE----MEPENPTPFVILS 359 (394)
Q Consensus 293 l~~~~~~~g~~~~--a~~~~~~~~~-----~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~ 359 (394)
++++.....+.+. +.-+.....+ -+ ..+|....+ ...+|+.++.+++-..+.. +.+.+...+..++
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 3322111122211 1112222222 11 124443333 2347888888888776654 3466777777777
Q ss_pred HHHhhc
Q 016128 360 NIYAGL 365 (394)
Q Consensus 360 ~~~~~~ 365 (394)
.-|.+.
T Consensus 387 rqyFrr 392 (1088)
T KOG4318|consen 387 RQYFRR 392 (1088)
T ss_pred HHHHHH
Confidence 777654
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=5.9e-11 Score=100.10 Aligned_cols=327 Identities=16% Similarity=0.112 Sum_probs=225.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcc
Q 016128 50 TALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQL 126 (394)
Q Consensus 50 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 126 (394)
....+-|.+.|++++|++.+.+..+ .|+ +..|.....+|...|+|+++.+.-....+. .|+ +.++..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 3455667889999999999999876 677 788999999999999999998887777765 554 44566666677777
Q ss_pred CCHHHHHH----------------------HHHH---------HHhC--CCCCCHHHHHHHHHHhhc--------cc---
Q 016128 127 GMRFEAFK----------------------LFEK---------MQST--GMVPSLKCVTSVLSACAD--------LS--- 162 (394)
Q Consensus 127 ~~~~~a~~----------------------~~~~---------m~~~--~~~~~~~~~~~l~~~~~~--------~~--- 162 (394)
|++++|+. ++.. +.+. .+.|+.....+....+.. .+
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 77776642 1111 1111 134555444444443321 00
Q ss_pred --hhhHHHHHHH------------HHHHc------CCCC---C------HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-
Q 016128 163 --ALKLGKETHG------------HVIRA------DLNK---D------ESMATALISMYMKCGQPSWARRFFDQFEIK- 212 (394)
Q Consensus 163 --~~~~a~~~~~------------~~~~~------~~~~---~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 212 (394)
....+.+.+. .+.+. .... | ..+...-...+.-.|+.-.|..-|+.....
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0111111111 11110 0011 1 111122222344567888888888887665
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC-CHhhHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP-KQEHFG 291 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 291 (394)
+.++..|--+...|....+.++....|++..+.+.. ++.+|..-.+...-.+++++|..-|++... +.| +...|-
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L~pe~~~~~i 432 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS---LDPENAYAYI 432 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh---cChhhhHHHH
Confidence 444444777888899999999999999999887643 777888888888888999999999998874 344 455677
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC------CCchHHHHHHHH
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE------NPTPFVILSNIY 362 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~ 362 (394)
.+..+..+.++++++...|++..+ |+.+ +|+.....+...++++.|.+.|+.++++.|. ++.++..-+.+.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 777777889999999999999987 8888 9999999999999999999999999999987 555554433332
Q ss_pred h-hcCCcccHHHHHHHhhhcc
Q 016128 363 A-GLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 363 ~-~~g~~~~a~~~~~~m~~~~ 382 (394)
. =.+++..|+.++++..+.+
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELD 533 (606)
T ss_pred hchhhhHHHHHHHHHHHHccC
Confidence 2 2378888999988887654
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=2.4e-11 Score=106.77 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCCHHH-HHHHHHHhhccchhhHHHHHHHHHHHc-----CC-
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQST-----G-MVPSLKC-VTSVLSACADLSALKLGKETHGHVIRA-----DL- 179 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 179 (394)
..+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555667777777777777777665543 1 1222222 222444455555555555555554321 10
Q ss_pred CC-CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016128 180 NK-DESMATALISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 180 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (394)
.| -..+++.|..+|.+.|++++|...+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 01 123334444455555555555444443
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=1.8e-11 Score=100.23 Aligned_cols=201 Identities=15% Similarity=0.105 Sum_probs=161.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
......+..+...+...|++++|...+++... +.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 44466788888899999999999999998764 345677888888999999999999999998886433 567788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGM-VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
..+...|++++|...+++..+... ......+..+..++...|++++|...+.+..+... .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 899999999999999999886432 22345667778888899999999999999887653 3566778888999999999
Q ss_pred hHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 200 SWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 200 ~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
++|...+++.... +.++..+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999987654 456666777888888899999999988877653
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=6.3e-12 Score=100.61 Aligned_cols=232 Identities=13% Similarity=0.048 Sum_probs=196.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (394)
--+.+.++|.+.|-+.+|.+.|+.-.+. .|-+.||..|.++|.+..++..|+.++.+-.+.- +.++....-....+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3367889999999999999999988775 5677899999999999999999999999988763 335555566778888
Q ss_pred HcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQI 273 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 273 (394)
..++.++|.++++...+. +.++.....+...|.-.++++-|+..|+++.+.|+. ++..|+.+.-+|.-.+++|-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999997665 666777777778888999999999999999999976 888999999999999999999999
Q ss_pred HHHchhcCCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 274 FTMMDDDFGLKPK--QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 274 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
|+..... --.|+ ..+|..+....+..||+.-|.+.|+-... ++.. .++.|...-.+.|+.+.|..++..+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9887754 22233 45788888888899999999999998876 5555 99999999999999999999999999888
Q ss_pred CCC
Q 016128 349 PEN 351 (394)
Q Consensus 349 ~~~ 351 (394)
|.-
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 753
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2.4e-13 Score=80.71 Aligned_cols=49 Identities=37% Similarity=0.741 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016128 76 RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124 (394)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 124 (394)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3e-10 Score=97.64 Aligned_cols=280 Identities=15% Similarity=0.068 Sum_probs=183.4
Q ss_pred hcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 016128 41 EKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS 118 (394)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 118 (394)
+...+......-.+-+...+++.+..++++.+.+ ++....+..-|..+...|+..+-.-+=.++...- +..+.+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 3455666666667777777777777777777664 4555556666667777777777666666666652 225667777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHc
Q 016128 119 MISGFSQLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNK-DESMATALISMYMKC 196 (394)
Q Consensus 119 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 196 (394)
+...|...|+.++|.+.|.+..... |+ ...|-....+++-.|..++|...+..+-+.-... -+..| +.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHh
Confidence 7777777777778877777755431 21 2356667777777777777777777665532111 12222 34456667
Q ss_pred CCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC------CCCCHhhHHHHHHHHHccCCHHH
Q 016128 197 GQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK------VKPNSASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~ 269 (394)
+..+.|.++|.+.... |.|+...+-+....-..+.+.+|..+|+..+..- ...-..+++.|.++|.+.+.+++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 7777787777775444 6677777777777777777777777777665210 11134457777777888888888
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHH
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGA 327 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~ 327 (394)
|+..+++... -.+.+..++.++.-.|...|+++.|.+.|.+... |+..+-..++..
T Consensus 474 AI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 474 AIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 8888777765 4455667777777777778888888888777654 666544444443
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=4.6e-13 Score=79.55 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 111 PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 111 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.3e-09 Score=92.76 Aligned_cols=353 Identities=13% Similarity=0.114 Sum_probs=207.5
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHH--HHHHH--
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNT--MIAGM-- 88 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--ll~~~-- 88 (394)
..-+=++.+...|++++|.+....++..+ +.+...+.+-+-++.+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHH
Confidence 33444566778889999999999999877 66777778777788899999999977665431 112222 23333
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---------------------
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP--------------------- 146 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--------------------- 146 (394)
.+.+..++|+..++ |..+ +..+...-...+.+.|++++|+++|+.+.+.+.+.
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 36677777777776 2222 23355555666777777777777777764433210
Q ss_pred ------CHHHHHHHH---HHhhccchhhHHHHHHHHHHHcC-------CCCCH-------HHHHHHHHHHHHcCCchHHH
Q 016128 147 ------SLKCVTSVL---SACADLSALKLGKETHGHVIRAD-------LNKDE-------SMATALISMYMKCGQPSWAR 203 (394)
Q Consensus 147 ------~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~g~~~~a~ 203 (394)
...+|..+. ..+...|++.+|+++++...+.+ -.-+. .+-..|...+-..|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 011232222 23455677777777777763211 00001 11122344555667777777
Q ss_pred HHHHHhhcC-CCChhh----------------------------------------------------------------
Q 016128 204 RFFDQFEIK-PDDPAF---------------------------------------------------------------- 218 (394)
Q Consensus 204 ~~~~~~~~~-~~~~~~---------------------------------------------------------------- 218 (394)
+++..+... +.|...
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 777654432 221110
Q ss_pred -----------------HHHHHHHH--hhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH----
Q 016128 219 -----------------WNAMISGY--GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT---- 275 (394)
Q Consensus 219 -----------------~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---- 275 (394)
+.+++... ++...+..+.+++....+....-.....-..++.....|+++.|..++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 11111110 0111233344444433332211122344455566677788888888887
Q ss_pred ----HchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHH
Q 016128 276 ----MMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 276 ----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
.+. .+.-.+.+...++..+.+.++.+.|..++.+... +... ++..++..-.+.|+-++|...+
T Consensus 405 ~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 333 2233445566667777777776666666655543 1111 4444445556789999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 342 MKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
+++.+..|++..+...++.+|.+. +.+.|..+-+.+
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999999999986 677777665543
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=3.1e-09 Score=92.98 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=82.9
Q ss_pred CCCHhh--HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 284 KPKQEH--FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 284 ~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
+|+... +-.++..|-+.|+++.|..+++.... |..+ .|..-.+.+...|+.++|..+++++.+++..|...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 455444 44577888999999999999999998 6666 777777889999999999999999999997776666677
Q ss_pred HHHHhhcCCcccHHHHHHHhhhccc
Q 016128 359 SNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 359 ~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
+.-..+++..++|..+....-+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7888899999999999888877664
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=2.8e-11 Score=106.41 Aligned_cols=233 Identities=15% Similarity=0.210 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHHcCCchHHHHHHHHhhcC--------
Q 016128 148 LKCVTSVLSACADLSALKLGKETHGHVIRA-----D-LNKDE-SMATALISMYMKCGQPSWARRFFDQFEIK-------- 212 (394)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------- 212 (394)
..+...+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++.+|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677899999999999999999988664 2 12222 23345778899999999999999986432
Q ss_pred -CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHccCCHHHHHHHHHHchhcCC--
Q 016128 213 -PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-----KV-KPNS-ASFVAVLSACGHAGHVDKALQIFTMMDDDFG-- 282 (394)
Q Consensus 213 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 282 (394)
|.-..+++.|..+|.+.|++++|...+++..+- |. .|.. ..++.++..|...+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222344888888999999999999888876431 21 1222 3466777888999999999999987765432
Q ss_pred CCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC----------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 283 LKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE----------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 283 ~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
..++ ..+++.|...|.+.|++++|.++++++.. +... .++.+...|.+.+++.+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 35788999999999999999999998874 2222 7888999999999999999999887763
Q ss_pred ----CCCCC---chHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 348 ----EPENP---TPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 348 ----~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+|.++ .+|..|+.+|.+.|+++.|+++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45444 5688899999999999999999988763
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=5.3e-11 Score=100.29 Aligned_cols=233 Identities=12% Similarity=-0.000 Sum_probs=162.6
Q ss_pred HHccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 123 FSQLGMRFEAFKLFEKMQSTG-MVPS--LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
....+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+... .+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCH
Confidence 344567788888888888542 2222 34577778888999999999999999988763 4688899999999999999
Q ss_pred hHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 200 SWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 200 ~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
++|...|++.... |.+...|..+..++...|++++|++.+++..+.. |+..........+...++.++|...+....
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999987665 6667788889999999999999999999998864 433222222223445678999999997765
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCcH--HHHHHHHHhCCC------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 279 DDFGLKPKQEHFGCMVDLLGRSGRL--DEARELIRELPE------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
. ...++... ..+... ..|+. +++.+.+.+..+ |+.. .|..+...+...|++++|+..|+++.+.+|
T Consensus 193 ~--~~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4 33333322 223333 34444 333333332222 3333 788999999999999999999999999996
Q ss_pred CC-CchHHHHHHHHh
Q 016128 350 EN-PTPFVILSNIYA 363 (394)
Q Consensus 350 ~~-~~~~~~l~~~~~ 363 (394)
++ +..-..++....
T Consensus 268 ~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 268 YNFVEHRYALLELAL 282 (296)
T ss_pred chHHHHHHHHHHHHH
Confidence 44 333344444433
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=1.6e-08 Score=88.65 Aligned_cols=194 Identities=11% Similarity=0.146 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC-----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC----------
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIKPDD-----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK---------- 248 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 248 (394)
..+..+...|-..|+.+.|..+|++..+.+-. ..+|-.-...-.+..+++.|+++++.....--.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 44566667777777777777777776654221 122444444455566777777777665432111
Q ss_pred C-------CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----CC
Q 016128 249 P-------NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----PT 317 (394)
Q Consensus 249 ~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~ 317 (394)
| +...|..+++.--..|-++....+++.+.+- .+ -++.+.......+....-++++.+++++-+. |+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 0 1223444444444556677777777777654 22 2233333333344556678888888888876 66
Q ss_pred hh-hHHHHHHHHHh---cCCchHHHHHHHHHHhhCCCCCch--HHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 318 VS-VYHSLLGACWC---HLNSDLGEEMAMKLQEMEPENPTP--FVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 318 ~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
.. .|+..+.-+.+ ....+.|..+|+++++.-|+...- |...+..-.+.|....|..+++++.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66 88887766654 246789999999999966644322 3333333445677777888887754
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=4.4e-10 Score=94.75 Aligned_cols=218 Identities=11% Similarity=0.034 Sum_probs=136.3
Q ss_pred hcCCHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH
Q 016128 90 LNGRSEKAMELFEGLAHEG-FKPD--PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL 166 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (394)
..+..+.++.-+.++.... ..|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777777542 2222 3457777777888888888888888877753 3356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 167 GKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
|.+.++...+.... +..++..+..++...|++++|.+.|++.... |.++ ........+...++.++|...+.+....
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888888776532 4566677777788888888888888876654 3333 2222222334566788888888665433
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCC-----CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 246 KVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK-----PKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
. .|+... ..+.. ...|+...+ ..+..+.+..... .....|..+...+.+.|++++|...|++..+
T Consensus 195 ~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 L-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred C-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 222221 12222 233444333 2334433211111 1234677778888888888888888887765
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=1.7e-10 Score=88.20 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
+...|.-.|...|+...|..-+++.... |.+..+|..+...|.+.|+.+.|.+.|++....... +....|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3445666788888888888888776554 556667788888888888888888888888776422 55677777777888
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEM 340 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~ 340 (394)
.|++++|...|+..........-..+|..+.-+..+.|+++.|.+.|++..+ |+.. +.-.+.....+.|++..|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 8888888888888877644444556777777777788888888888888776 5555 777777778888888888888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 341 AMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+++.....+.+...+...+..-.+.|+.+.+-++-.++..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888777777777777777777778887777766555543
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.8e-09 Score=85.96 Aligned_cols=122 Identities=9% Similarity=0.075 Sum_probs=73.7
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCC--------------ChhH---
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR--------------NILT--- 80 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~--- 80 (394)
..++...|++++|..+|..+.... .++...+..|.-++.-.|.+.+|.++-.+.+..| |..-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 344557788888888888877755 5666667777777777788888888777665322 1110
Q ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHhC
Q 016128 81 -----------WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS-MISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 81 -----------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
--+|.......-.+.+|++++.+.... .|+-...|. +.-+|.+..-++-+.+++.-..+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 112222222334567777777777765 344444443 334566666666666666655543
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=1.2e-09 Score=97.38 Aligned_cols=299 Identities=13% Similarity=0.132 Sum_probs=138.0
Q ss_pred HHHHhcCChhHHHHHHHHhcc-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-----
Q 016128 54 DMYLKCGCLPCAHNVFQELKG-SRNI-LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL----- 126 (394)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----- 126 (394)
..+...|++++|++.++.-.. -.|. .........+.+.|+.++|..++..+.+.++. |..-|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 344556666666666655442 1232 33444556666666666666666666666321 233333344443211
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 016128 127 GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK-LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRF 205 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (394)
.+.+....+|+++...- |.......+.-.+.....+. .+...+..+...|++ .+|+.|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455555666555432 33333322222222222222 233444444455532 2344444444333222222222
Q ss_pred HHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHchhcCCC
Q 016128 206 FDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFVAVLSACGHAGHVDKALQIFTMMDDDFGL 283 (394)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (394)
+..+... +...+.+.... ....-.|.. .++..+.+.|...|++++|..+++....+
T Consensus 166 ~~~~~~~-------------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--- 223 (517)
T PF12569_consen 166 VEEYVNS-------------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--- 223 (517)
T ss_pred HHHHHHh-------------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Confidence 2222110 00000000000 000011222 23344455566666666666666666543
Q ss_pred CCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcCCchHHHHHHHHHHhhCC-CCCc-----
Q 016128 284 KPK-QEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHLNSDLGEEMAMKLQEMEP-ENPT----- 353 (394)
Q Consensus 284 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----- 353 (394)
.|+ +..|..-.+.|.+.|++.+|.+.++...+-|.. +-+..+..+.+.|+.++|.+.+..+...+. +...
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 333 455555666666666666666666666552222 444555556666666666666666654431 1111
Q ss_pred -hH--HHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 354 -PF--VILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 354 -~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+| ...+.+|.+.|++..|++.|..+.+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 2345566677777777766655543
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=5.8e-11 Score=90.65 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=144.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
...|.-.|.+.|+...|..-+++.++... -+..++..+...|.+.|..+.|.+.|+..... -+-+-.+.|...-.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 56677889999999999999999999753 36678999999999999999999999999852 2345678899999999
Q ss_pred hcCcHHHHHHHHHhCCC----CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHH
Q 016128 299 RSGRLDEARELIRELPE----PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 373 (394)
..|++++|...|++... +... +|..+.-+..+.|+.+.|...|++..+.+|..+.+...+.....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999999987 3344 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccc
Q 016128 374 IRQMINDRQL 383 (394)
Q Consensus 374 ~~~~m~~~~~ 383 (394)
+++.....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9998877654
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.2e-09 Score=86.87 Aligned_cols=301 Identities=10% Similarity=-0.016 Sum_probs=219.2
Q ss_pred CCCCChHHHHHHHHHhhhhHhHH--HHHHHHHHHHh-hhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChh---
Q 016128 6 SDEPNSVTFISVISACASLLYLQ--FGRQVHGLTLK-IEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNIL--- 79 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 79 (394)
.+.|+..+...-+.+++..-..+ .+.+.+-.+.. .-++.+......+.+++...|+.++|+..|++.. ..|+.
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-~~dpy~i~ 267 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-CANPDNVE 267 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-hCChhhhh
Confidence 45666666666777766554333 33333333332 2357789999999999999999999999999987 33333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 159 (394)
......-.+.+.|+++....+...+....- -....|..-.......++++.|+.+-++.++.. +.+...+-.-..++.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 233344556788999998888888776521 133444444555666788999999999888753 234455666667788
Q ss_pred ccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHH-HHHh-hcCChhhHH
Q 016128 160 DLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMI-SGYG-RNGEYESAV 236 (394)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~-~~~~-~~~~~~~a~ 236 (394)
..++.++|.-.|+...... +-+...|.-|+++|...|++.+|.-+-+..... +.+..+.+.+. ..+. ...--++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 9999999999999988764 347899999999999999999998877664333 44555544442 2222 223357888
Q ss_pred HHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 237 EIFDLMQQEKVKPN-SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
+++++-... .|+ ....+.+...|...|..+.++.+++.... .-||....+.|...+...+.+++|.+.|.....
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888887765 454 35667788889999999999999999885 478999999999999999999999999987654
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.7e-09 Score=90.01 Aligned_cols=348 Identities=11% Similarity=0.079 Sum_probs=222.4
Q ss_pred HHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-ChhHHHHHHHHHHhcCCHHH
Q 016128 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SR-NILTWNTMIAGMMLNGRSEK 96 (394)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~ll~~~~~~~~~~~ 96 (394)
.+....|+++.|...|...+... +++...|..-..+|++.|++++|++=-.+-.. .| -...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34567899999999999998887 66889999999999999999999877666554 34 45679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcc------------------------------------------------CC
Q 016128 97 AMELFEGLAHEGFKPDPATWNSMISGFSQL------------------------------------------------GM 128 (394)
Q Consensus 97 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------------------------------------------------~~ 128 (394)
|+..|.+-.+.... +...++.+..++... .+
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999987776322 344445554444111 00
Q ss_pred HHHHHHHHHHHH--------hCC-------CCC------------C----------HHHHHHHHHHhhccchhhHHHHHH
Q 016128 129 RFEAFKLFEKMQ--------STG-------MVP------------S----------LKCVTSVLSACADLSALKLGKETH 171 (394)
Q Consensus 129 ~~~a~~~~~~m~--------~~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~ 171 (394)
.+......-.+. ..| ..| | ..-...+.++..+..++..+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 011111111100 001 111 0 123677888889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh-HHH-------HHHHHhhcCChhhHHHHHHHHH
Q 016128 172 GHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF-WNA-------MISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~-------l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
....... .+..-++....+|...|.+..+...-+...+.+..... |+. +..+|.+.++++.++..|++..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 9998876 46777788888899999888777766654443222222 333 3446677788999999999876
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS- 319 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~- 319 (394)
.....|+.. .+....+++.+...... -+.|.. .-...-...+.+.|++..|...|.+++. |++.
T Consensus 326 te~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 654443322 12233344444333322 122221 1111224556666777777766666665 5555
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.|....-+|.+.|.+..|++-.+...+++|+....|..-+.++....+|++|.+.|.+..+.+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666667777777777776666666666666666666666666667777766666655543
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.30 E-value=1.4e-08 Score=82.41 Aligned_cols=194 Identities=16% Similarity=0.085 Sum_probs=119.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTM---IAGMMLNGRSEKAMELFEGLAHEGFKPDPATW-NSMI 120 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~ 120 (394)
++.-.--+...+...|++.+|+.-|.... ..|+..|.++ ...|...|+-.-|+.=+++..+. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44455567778888999999999999988 5555556555 45788889888888888888876 6774432 2344
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHH--------------HH--HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLK--------------CV--TSVLSACADLSALKLGKETHGHVIRADLNKDES 184 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--------------~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 184 (394)
..+.++|.+++|..=|+...+.. |+.. .+ ...+..+...|+...|.+....+++.. +-+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 56889999999999999988763 2211 11 112223344455555555555555543 23555
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.+..-..+|...|++..|+.=++...+. ..+...+--+...+-..|+.+.++...++.++
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555566666665555555444332 23334444444555555555555555555554
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.9e-10 Score=99.16 Aligned_cols=220 Identities=13% Similarity=0.056 Sum_probs=177.7
Q ss_pred hhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHH
Q 016128 158 CADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAV 236 (394)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 236 (394)
+.+.|++.+|.-.|+..++.++ -+...|..|.......++-..|+..+++..+. |.+....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 4567889999999999888763 47888999999999999999999999887665 677777888888999999999999
Q ss_pred HHHHHHHHcCCC-----C---CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 016128 237 EIFDLMQQEKVK-----P---NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308 (394)
Q Consensus 237 ~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (394)
+.++.-....++ + +...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999987654311 0 0000000 12222334455666666665554666888899999999999999999999
Q ss_pred HHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 309 LIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 309 ~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.|+.... |++. .||.|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.+++|...|=.++.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999886 8888 9999999999999999999999999999999999999999999999999999998877654
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=5.2e-08 Score=85.29 Aligned_cols=59 Identities=8% Similarity=-0.073 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCC---------CCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPE---------NPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
....++...|+.+.|...++.+...... ........+.++...|++++|.+.+......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556666777777777666552211 2233344455566778888888887776653
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=2.7e-10 Score=94.64 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=85.0
Q ss_pred HHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCCH
Q 016128 192 MYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH----AGHV 267 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 267 (394)
.+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...++.++.. .+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhH
Confidence 344455566555554432 344445555666666666666666666666532 22333344444322 2346
Q ss_pred HHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc-hHHHHHHHH
Q 016128 268 DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS-DLGEEMAMK 343 (394)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~-~~a~~~~~~ 343 (394)
.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++..+ |+.. +...++.+....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 677777777655 3455666666667777777777777777766655 4444 555566666666665 556667777
Q ss_pred HHhhCCCC
Q 016128 344 LQEMEPEN 351 (394)
Q Consensus 344 ~~~~~~~~ 351 (394)
+....|.+
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 66666654
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=1e-07 Score=83.74 Aligned_cols=250 Identities=12% Similarity=0.133 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcC
Q 016128 127 GMRFEAFKLFEKMQSTGMVPS------LKCVTSVLSACADLSALKLGKETHGHVIRADLNKD---ESMATALISMYMKCG 197 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 197 (394)
|+..+....|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+.+.+.- ..+|..-...-.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4445555555555443 2221 23567778888899999999999999988765432 345555556666778
Q ss_pred CchHHHHHHHHhhcCCCC-------------------hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 198 QPSWARRFFDQFEIKPDD-------------------PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
+++.|.++.+.....|.+ ...|...++..-..|-++....+|+++.+..+. ++.......
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyA 518 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYA 518 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 889999988876544332 223666666666777888888888887665432 222222222
Q ss_pred HHHHccC---------------------------------------CHHHHHHHHHHchhcCCCCCCHhh--HHHHHHHH
Q 016128 259 SACGHAG---------------------------------------HVDKALQIFTMMDDDFGLKPKQEH--FGCMVDLL 297 (394)
Q Consensus 259 ~~~~~~~---------------------------------------~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 297 (394)
..+-... .++.|..+|++..+ +++|...- |-.....-
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 2222333 34555555555544 44333211 11111111
Q ss_pred HhcCcHHHHHHHHHhCCC---CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc--hHHHHHHHHhhcCCccc
Q 016128 298 GRSGRLDEARELIRELPE---PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT--PFVILSNIYAGLGRWED 370 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~---~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 370 (394)
.+.|-...|+.++++... +... .||..|.-....=.+.....+|+++++.-|++.. +....+..-.+.|..+.
T Consensus 597 Ee~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidR 676 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDR 676 (835)
T ss_pred HHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHH
Confidence 223444455555555443 1111 4555443333333334445556666665554322 23334555667788888
Q ss_pred HHHHHHHhhh
Q 016128 371 VGRIRQMIND 380 (394)
Q Consensus 371 a~~~~~~m~~ 380 (394)
|..++.--.+
T Consensus 677 ARaIya~~sq 686 (835)
T KOG2047|consen 677 ARAIYAHGSQ 686 (835)
T ss_pred HHHHHHhhhh
Confidence 8888765444
No 85
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=6.9e-10 Score=100.25 Aligned_cols=259 Identities=13% Similarity=0.114 Sum_probs=170.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcC
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRAD 178 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 178 (394)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556666777777777777777777777777776 7777766656666677777777777777666554
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCCHhhHHHH
Q 016128 179 LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ-EKVKPNSASFVAV 257 (394)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 257 (394)
.|.+.+|..|..+|...|+... |+...+ -...+...+...|.-.....++..+.- .+..||..+.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~--- 145 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA--- 145 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---
Confidence 4667777777777777777654 222222 123333445555555555555554332 2234454432
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc-CcHHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCch
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS-GRLDEARELIRELPE-PTVSVYHSLLGACWCHLNSD 335 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 335 (394)
+......|.++.+.+++..+-......|... +++-.... ..+++-..+.+...+ |+..+|..++.+-...|+.+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 3334455777777777765533211122221 24444333 345666666666666 88889999999999999999
Q ss_pred HHHHHHHHHHhhC-CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCC
Q 016128 336 LGEEMAMKLQEME-PENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGI 389 (394)
Q Consensus 336 ~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 389 (394)
.|..++.+|.+.+ |-++..|..|+.. .|+..-++.+++.|.+.|+.|+...
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 9999999999988 7777777777655 7888889999999999999988754
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=5.3e-08 Score=77.62 Aligned_cols=370 Identities=12% Similarity=0.027 Sum_probs=196.3
Q ss_pred CccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChh
Q 016128 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNIL 79 (394)
Q Consensus 1 M~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 79 (394)
|... |+..-...+.+++..+.+..++..|++++..-.+.. +.+....+.|..+|....++..|-.+++++.. .|...
T Consensus 1 M~~~-g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 1 MAGS-GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 78 (459)
T ss_pred CCcc-cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 4455 677777778899999999999999999988777665 55777888899999999999999999998875 34444
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHhc------------------CC-------------CCCHHHHHHHHHHHHccC
Q 016128 80 TWNT-MIAGMMLNGRSEKAMELFEGLAHE------------------GF-------------KPDPATWNSMISGFSQLG 127 (394)
Q Consensus 80 ~~~~-ll~~~~~~~~~~~a~~~~~~m~~~------------------g~-------------~p~~~~~~~l~~~~~~~~ 127 (394)
-|.. -..++.+.+.+..|+++...|... +- .-+..+.+.......+.|
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence 4432 234555666666666666655432 00 002233333333445667
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC-------------CH----------
Q 016128 128 MRFEAFKLFEKMQST-GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK-------------DE---------- 183 (394)
Q Consensus 128 ~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------- 183 (394)
+++.|.+-|+...+- |..| ...|+..+ ++.+.++++.|.+...+++++|++. |.
T Consensus 159 qyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 777777777666553 3333 33444333 4445666777777777666655321 10
Q ss_pred -----HHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH
Q 016128 184 -----SMATALISMYMKCGQPSWARRFFDQFEIK---PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255 (394)
Q Consensus 184 -----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (394)
..+|.-...+.+.|+++.|.+.+-.|+.+ ..||.+...+.-. -..+++.+..+-+.-+.+.+. -...||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHH
Confidence 01111122234556666666666666543 3345443333221 123344444555555555433 2445666
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g 332 (394)
.++-.||+..-++.|-.++.+-....-.-.+...|+.|=......-..++|.+-+..+...-.. ...+-++- .+..
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe-~r~~ 393 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQE-ARHN 393 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 6666777766666666666543322000122333332222222233445554444333210000 00000111 1111
Q ss_pred CchH----HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 333 NSDL----GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 333 ~~~~----a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+-+. +++-|++..++. ..+...-++.|.+..++..++++|..-.+
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1111 222233333322 11334445667788899999999876554
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=2.2e-07 Score=81.73 Aligned_cols=368 Identities=10% Similarity=0.054 Sum_probs=214.4
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMI 85 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll 85 (394)
+|-..++-.-+--|-..+++...++..+.+++ +.+-...+.....-.+...|+-++|......-.. ..+.+.|..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 33333333333344566777777777777776 3344445555555555666778888777776553 34556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
-.+-...++++|++.|......+.. |...|.-+.-.-++.|+++.....-.++.+.. +-....|..+..+..-.|+..
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888877776433 56666666666667777777666666665541 223345566666666777777
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHHcCCchHHHHHHHHhhcCCCCh-hhHHHHHHHHhhcCChhhHHH
Q 016128 166 LGKETHGHVIRAD-LNKDESMATALI------SMYMKCGQPSWARRFFDQFEIKPDDP-AFWNAMISGYGRNGEYESAVE 237 (394)
Q Consensus 166 ~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 237 (394)
.|..+++...+.. ..|+...+.-.. ......|..++|.+.+......-.|- ..-..-...+.+.+++++|..
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 7777777776554 244554443222 22344555666665555443321111 112334455666777777777
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHH--ccCCHHHHHHHHHHchhcC---------------------------------C
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACG--HAGHVDKALQIFTMMDDDF---------------------------------G 282 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------------------------------~ 282 (394)
++..+... .||...|......+. -.+..+....+|....+.+ |
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 77777665 345544443333222 1222222223333332211 3
Q ss_pred CCCCHhhHHHHHHHHHhcCcHH---H-HHHHHHhCC-------------CCChh---hHHHHHHHHHhcCCchHHHHHHH
Q 016128 283 LKPKQEHFGCMVDLLGRSGRLD---E-ARELIRELP-------------EPTVS---VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~---~-a~~~~~~~~-------------~~~~~---~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
+++- +..+...|-.....+ + +..+...+. +|... ++-.++..+-..|+++.|..+.+
T Consensus 319 ~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3322 222222221111111 0 111111111 13333 44456678888999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 343 KLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
.+.+.-|.-+..|..-++.+.+.|++++|..++++..+.+.
T Consensus 396 ~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 396 LAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99998898888899999999999999999999999877543
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.9e-08 Score=80.97 Aligned_cols=350 Identities=13% Similarity=0.122 Sum_probs=187.7
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHH
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~ 95 (394)
+.-+...+|+..|+.+++.-...+-.-...+---+..++...|++++|...+.-+.. .++...+..|...+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 444566788999999998777555333333444456778889999999999998765 456666777777777778888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHc------------------------------cCCHHHHHHHHHHHHhCCCC
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQ------------------------------LGMRFEAFKLFEKMQSTGMV 145 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~------------------------------~~~~~~a~~~~~~m~~~~~~ 145 (394)
+|..+-....+. +-.-..|++...+ .-.+++|+++|.+.... .
T Consensus 109 eA~~~~~ka~k~-----pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-----PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHHhhCCCC-----hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 888776654321 1112222222222 23456666666666543 2
Q ss_pred CCHHHHHHHH-HHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCchH----------------HHHHH
Q 016128 146 PSLKCVTSVL-SACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC--GQPSW----------------ARRFF 206 (394)
Q Consensus 146 ~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~----------------a~~~~ 206 (394)
|+-...|.-+ -+|.+..-++-+.+++.-....- +.++...|....-..+. |+..+ +..+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 3444444333 33455666666666666555442 22233333222222211 21111 11111
Q ss_pred H-----------------HhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHH-----Hcc
Q 016128 207 D-----------------QFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC-----GHA 264 (394)
Q Consensus 207 ~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~ 264 (394)
+ .+.+ .-|..--.|+--|.+.++..+|..+.+++.. ..|.......+..+- ...
T Consensus 261 rHNLVvFrngEgALqVLP~L~~--~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMK--HIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHh--hChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcH
Confidence 1 1100 1122233445556778888888887766532 122222222222111 111
Q ss_pred CCHHHHHHHHHHchhcCCC-----------------------------------CCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 265 GHVDKALQIFTMMDDDFGL-----------------------------------KPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
....-|.+.|+..-.. +. ..|...--.+..+++..|.+.+|.++
T Consensus 337 eHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHH
Confidence 1223333333332211 11 11111122356677778888888888
Q ss_pred HHhCCCCC---hhhHHH-HHHHHHhcCCchHHHHHHHHHHhhC-CCCC-chHHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 310 IRELPEPT---VSVYHS-LLGACWCHLNSDLGEEMAMKLQEME-PENP-TPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 310 ~~~~~~~~---~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
|-++..|+ ..+|.. |.++|.+.++++.|..++ .+.+ |.+. ..+...++.|.+.+.+--|-+.|+.+...+.
T Consensus 416 f~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 416 FIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 88887754 335544 457778888888776654 3334 3222 2344456677788888888888887776543
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.4e-07 Score=82.59 Aligned_cols=295 Identities=15% Similarity=0.069 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILT---WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMIS 121 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 121 (394)
..|..+...+...|+.+.+...+..... +++... .......+...|++++|.+++++..+.... +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3444444555555555555444444332 112111 111223344566777777777666655221 3333332 11
Q ss_pred HHH----ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016128 122 GFS----QLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196 (394)
Q Consensus 122 ~~~----~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (394)
.+. ..+....+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 222 23333444444433 1112222 2333345556666777777777777776654 23455566666777777
Q ss_pred CCchHHHHHHHHhhcC-CCCh----hhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CCCHhhH-H--HHHHHHHccCCH
Q 016128 197 GQPSWARRFFDQFEIK-PDDP----AFWNAMISGYGRNGEYESAVEIFDLMQQEKV-KPNSASF-V--AVLSACGHAGHV 267 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~ 267 (394)
|++++|..++++.... +.++ ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 7777777777765443 1111 1244566667777777777777777643321 1111111 1 222222233322
Q ss_pred HHHHHH---HHHchhc-CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---C---Chh------hHHHHHHHHHhc
Q 016128 268 DKALQI---FTMMDDD-FGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---P---TVS------VYHSLLGACWCH 331 (394)
Q Consensus 268 ~~a~~~---~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~---~~~------~~~~l~~~~~~~ 331 (394)
+.+..+ ....... .+ ............++...|+.+.|...++.+.. . ... ......-++...
T Consensus 242 ~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 222222 1111110 01 11111112455566777778777777776643 1 101 112222344567
Q ss_pred CCchHHHHHHHHHHhh
Q 016128 332 LNSDLGEEMAMKLQEM 347 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~ 347 (394)
|+.++|.+.+..+...
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888777654
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.21 E-value=1.5e-09 Score=90.17 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=129.9
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 100 (394)
..-.|++..++.-.+ ........+......+.+++...|+.+.++.-...-. +|.......+...+...++-+.++.-
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 334566666665444 1111112233344556666666777665554443333 45555554444444333444445444
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCC
Q 016128 101 FEGLAHEGFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADL 179 (394)
Q Consensus 101 ~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 179 (394)
+++....+..+ +..........+...|++++|++++..- .+.......+.++.+.++++.|.+.++.|.+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 44433332222 2222233334555667777777666432 245556666777777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhH
Q 016128 180 NKDESMATALISMYMK----CGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (394)
.|.. ...+..++.. ...+.+|..+|+++... ++++.+.+.+..++...|++++|.+++.+....+.. ++.+.
T Consensus 162 -eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~L 238 (290)
T PF04733_consen 162 -EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTL 238 (290)
T ss_dssp -CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHH
T ss_pred -CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHH
Confidence 2332 2334444332 23577777777777666 456666677777777777777777777776654422 55566
Q ss_pred HHHHHHHHccCCH-HHHHHHHHHchh
Q 016128 255 VAVLSACGHAGHV-DKALQIFTMMDD 279 (394)
Q Consensus 255 ~~l~~~~~~~~~~-~~a~~~~~~~~~ 279 (394)
..++......|+. +.+.+++.++..
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6666666666665 556666666654
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=1.2e-07 Score=77.14 Aligned_cols=312 Identities=10% Similarity=0.014 Sum_probs=194.0
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHH-HHHHHHHhcC
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWN-TMIAGMMLNG 92 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~ll~~~~~~~ 92 (394)
--+-+.+...|++..|+.-|...++-+ +.+-.++-.-...|...|+-..|+.-+.++.+ +||...-. --...+.+.|
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 344555666677777777777776543 22333344445678888999889888888775 56653322 2235678999
Q ss_pred CHHHHHHHHHHHHhcCCCC--CHHH------------HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 016128 93 RSEKAMELFEGLAHEGFKP--DPAT------------WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
.+++|..=|+...+..... .... ....+..+...|+...|+.....+.+.. +-|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 9999999999998873321 1111 2233455677899999999999999863 44777888889999
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
...|++..|..=++...+.... +...+-.+-..+...|+.+.++...++..+..|+-... |..-+...+..+.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C------f~~YKklkKv~K~ 272 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC------FPFYKKLKKVVKS 272 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH------HHHHHHHHHHHHH
Confidence 9999999999888888776543 55555567788889999999999999987753432221 1111111222222
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-----HhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-----QEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
+..|.+ ....++|.++..-.+...+. .|. ...+..+..++...|++.+|++...++
T Consensus 273 les~e~----------------~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 273 LESAEQ----------------AIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHH----------------HHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 222222 12233444444444444332 122 122334445555566666666666665
Q ss_pred CC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 314 PE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 314 ~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
.+ |+++ ++.--..+|.-...++.|+.-|+++.+.+++|..+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 54 4444 66666666666666666666666666666655443
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-08 Score=87.56 Aligned_cols=322 Identities=10% Similarity=0.064 Sum_probs=196.6
Q ss_pred HHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHH
Q 016128 54 DMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRF 130 (394)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~ 130 (394)
.+.+..|+++.|+.+|.+... ++|...|..=..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 456678999999999998655 678888999999999999999998877666664 666 568899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH---HHHHHHHHHcC---CCCCHHHHHHHHHHHH----------
Q 016128 131 EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG---KETHGHVIRAD---LNKDESMATALISMYM---------- 194 (394)
Q Consensus 131 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~~~~~---------- 194 (394)
+|+.-|.+=.+.. +-|...++.+..++......... -.++..+.... .......|..++..+-
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999877653 33555666666665111000000 00111110000 0000011111111110
Q ss_pred HcCCchHHHHHHHH-----------hhcC----C--------C-------------ChhhHHHHHHHHhhcCChhhHHHH
Q 016128 195 KCGQPSWARRFFDQ-----------FEIK----P--------D-------------DPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 195 ~~g~~~~a~~~~~~-----------~~~~----~--------~-------------~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
...+...+...+.. +... | + ...-...+.++.-+..+++.|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 00001111111110 0000 0 0 001145566777777778888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCC--CC----HhhHHHHHHHHHhcCcHHHHHHHHHh
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK--PK----QEHFGCMVDLLGRSGRLDEARELIRE 312 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (394)
+....... -+..-++....+|...|.+.+....-....+. |.. .+ ...+..+..+|.+.++++.|+..|++
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 87777654 34455555666676666665555444433332 111 11 11222344577777777777777776
Q ss_pred CCC----------------------------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 313 LPE----------------------------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 313 ~~~----------------------------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
... |... -...-...+.+.|++..|+..|.+++..+|+++..|...+-+|.
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 543 2221 11222455678999999999999999999999999999999999
Q ss_pred hcCCcccHHHHHHHhhhc
Q 016128 364 GLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (394)
+.|.+..|++-.+...+.
T Consensus 404 kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 999999999877766654
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=2e-07 Score=92.03 Aligned_cols=328 Identities=11% Similarity=-0.034 Sum_probs=213.0
Q ss_pred HHHhcCChhHHHHHHHHhcc---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C----CCC--HHHHHHHHHHH
Q 016128 55 MYLKCGCLPCAHNVFQELKG---SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEG--F----KPD--PATWNSMISGF 123 (394)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~----~p~--~~~~~~l~~~~ 123 (394)
.....|+++.+...++.++. ..+..........+...|+++++...++.....- . .|. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456788887777777642 1222233344555667899999999998775431 1 111 11222334556
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccchhhHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHH
Q 016128 124 SQLGMRFEAFKLFEKMQSTGMVPSL----KCVTSVLSACADLSALKLGKETHGHVIRADL---NK--DESMATALISMYM 194 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 194 (394)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++...... .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999987653111121 2345566667789999999999888764321 11 1234455677788
Q ss_pred HcCCchHHHHHHHHhhcC----C-C----ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCC--CHhhHHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIK----P-D----DPAFWNAMISGYGRNGEYESAVEIFDLMQQEK--VKP--NSASFVAVLSAC 261 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~----~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 261 (394)
..|+++.|...+++.... . + ....+..+...+...|++++|...+.+..... ..+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998875332 1 1 11224455666777899999999998875531 112 233445566677
Q ss_pred HccCCHHHHHHHHHHchhcC-CCCCCHh--h--HHHHHHHHHhcCcHHHHHHHHHhCCCCChh-------hHHHHHHHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDF-GLKPKQE--H--FGCMVDLLGRSGRLDEARELIRELPEPTVS-------VYHSLLGACW 329 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~ 329 (394)
...|+.+.|...+....... ....... . ....+..+...|+.+.|..++.....+... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999888875321 1111111 0 011224455689999999998877653211 1346677888
Q ss_pred hcCCchHHHHHHHHHHhhCC------CCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 330 CHLNSDLGEEMAMKLQEMEP------ENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..|++++|...++++..... ....+...++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999887531 122356777888999999999999999987754
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=3.2e-08 Score=78.80 Aligned_cols=192 Identities=14% Similarity=0.061 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHH
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS-MISGFS 124 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~ 124 (394)
-+++.+..+.+..++.+|++++....+ +.+....+.|..+|....++..|.+.++++... .|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 355556666677777777777766554 235555666677777777777777777777665 444444432 234455
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL--SACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
+.+.+.+|+++...|.+. |+...-..-+ ......+++..+..+.++.-..| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 667777777777766542 2221111111 12244566666666665543322 333344444445566667776
Q ss_pred HHHHHHhhcC-CCChhh-HHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 016128 203 RRFFDQFEIK-PDDPAF-WNAMISGYGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 203 ~~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
.+-|+...+. +-++-. ||. .-++.+.|+++.|++...++.+.|++
T Consensus 164 vqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 6666665443 233322 333 33344556666677766666666543
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=4.2e-07 Score=81.63 Aligned_cols=343 Identities=15% Similarity=0.091 Sum_probs=228.3
Q ss_pred hhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH
Q 016128 40 IEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATW 116 (394)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~ 116 (394)
..+..|+.+|..+.-+...+|+++.+.+.|++... -.....|+.+...|...|.-..|..+++.-......|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567899999999999999999999999999773 23456799999999999999999999988776543343 3344
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHhhcc-----------chhhHHHHHHHHHHHcCCC
Q 016128 117 NSMISGFS-QLGMRFEAFKLFEKMQST--GM--VPSLKCVTSVLSACADL-----------SALKLGKETHGHVIRADLN 180 (394)
Q Consensus 117 ~~l~~~~~-~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 180 (394)
-.....|. +.+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 457777777777766551 11 12233444444444321 2345677888888776643
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc-CCC---------
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-KVK--------- 248 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--------- 248 (394)
|+.+.-.+.--|+..++.+.|.+..++.... ..++..|..|.-.+...+++.+|+.+.+..... |..
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 3333333555677889999999999887654 467778999999999999999999999876543 110
Q ss_pred ---------CCHhhHHHHHHHHHc------cC-----------------CHHHHHHHHHHc----h---hcC--------
Q 016128 249 ---------PNSASFVAVLSACGH------AG-----------------HVDKALQIFTMM----D---DDF-------- 281 (394)
Q Consensus 249 ---------~~~~~~~~l~~~~~~------~~-----------------~~~~a~~~~~~~----~---~~~-------- 281 (394)
-...|...++..+-. .+ +..++....+.+ . +..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222222210 00 000010000000 0 000
Q ss_pred -CCCCCH--------hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 282 -GLKPKQ--------EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 282 -~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
...|++ ..|......+.+.+..++|...+.+... |-.. .|......+...|+.++|.+.|..+..++|
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 111111 1334455677788888888888887776 4444 777777788889999999999999999999
Q ss_pred CCCchHHHHHHHHhhcCCcccHHH--HHHHhhhccc
Q 016128 350 ENPTPFVILSNIYAGLGRWEDVGR--IRQMINDRQL 383 (394)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~ 383 (394)
+++.....++.++.+.|+..-|.. ++..+.+.+.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 999999999999999998888887 8888776553
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.10 E-value=9.7e-08 Score=90.78 Aligned_cols=234 Identities=11% Similarity=0.126 Sum_probs=183.8
Q ss_pred HHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccC-------CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016128 33 VHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGS-------RNILTWNTMIAGMMLNGRSEKAMELFEGLA 105 (394)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 105 (394)
=|++.+... |.+...|-..|......++.+.|++++++.... .-...|-++++.-...|.-+...++|++..
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 344444444 667889999999999999999999999998741 123568888888888888899999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC-CCHH
Q 016128 106 HEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN-KDES 184 (394)
Q Consensus 106 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 184 (394)
+. --.-..|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-.. -...
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 85 223457888999999999999999999999876 3356788999999999999999999999998775322 2345
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHHHHHHHH
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFVAVLSAC 261 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 261 (394)
.....+..-.+.|+.++++.+|+..... |...+.|+..++.-.+.|+.+.+..+|++....++.|.. ..|...+..-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 5566677778899999999999987665 778889999999999999999999999999998876643 3455555444
Q ss_pred HccCCHHHH
Q 016128 262 GHAGHVDKA 270 (394)
Q Consensus 262 ~~~~~~~~a 270 (394)
-+.|+-+.+
T Consensus 1682 k~~Gde~~v 1690 (1710)
T KOG1070|consen 1682 KSHGDEKNV 1690 (1710)
T ss_pred HhcCchhhH
Confidence 444554433
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=9.8e-07 Score=87.28 Aligned_cols=325 Identities=10% Similarity=-0.015 Sum_probs=206.7
Q ss_pred hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CC------Ch--hHHHHHHHHHHhcC
Q 016128 24 LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SR------NI--LTWNTMIAGMMLNG 92 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~------~~--~~~~~ll~~~~~~~ 92 (394)
.|++..+.++++.+.......+..........+...|++++|...+..... .. .. .....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 345555555544432221122333334455566778999999998887642 11 11 11222334556789
Q ss_pred CHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHhhccch
Q 016128 93 RSEKAMELFEGLAHEGFKPD----PATWNSMISGFSQLGMRFEAFKLFEKMQST----GM-VPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~ 163 (394)
++++|...+++....-...+ ..+.+.+...+...|++++|...+++.... |. .+...++..+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999998876311112 134456667788899999999999887642 11 1112344566677888999
Q ss_pred hhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC----CC--ChhhHHHHHHHHhhcC
Q 016128 164 LKLGKETHGHVIRA----DLN--K-DESMATALISMYMKCGQPSWARRFFDQFEIK----PD--DPAFWNAMISGYGRNG 230 (394)
Q Consensus 164 ~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~ 230 (394)
++.|...+++.... +.. + ....+..+...+...|++++|...+++.... .+ ....+..+...+...|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 99999988876542 211 1 2233445666777789999999998875432 11 1233555667788899
Q ss_pred ChhhHHHHHHHHHHcCCCC-CHhhH-----HHHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHHHHHHhcC
Q 016128 231 EYESAVEIFDLMQQEKVKP-NSASF-----VAVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMVDLLGRSG 301 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 301 (394)
+++.|...+.+........ ....+ ...+..+...|+.+.|..++...... ..... ...+..+..++...|
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcC
Confidence 9999999998875431111 11111 11223445578999999998776542 11111 111345677888999
Q ss_pred cHHHHHHHHHhCCC--------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 302 RLDEARELIRELPE--------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 302 ~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
++++|...+++... ++.. +...+..++...|+.++|...+.++.+...
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 99999999888764 1222 566677888999999999999999999774
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=3.3e-08 Score=88.01 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=188.5
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+|-...-..+...+.+.|-...|..+|+++. .|.-++..|...|+..+|..+..+-.++ +||+..|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 4444555678888999999999999999977 6777888999999999999998888875 7899999999988
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
....--+++|.++.+..-.. .-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 88887889999888775432 11222223345789999999999887765 34677888888899999999999
Q ss_pred HHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 203 RRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
.+.|...... |.+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++....
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999887665 6677889999999999999999999999999987 3356667777777889999999999998886543
Q ss_pred CCCCCHhhHHHHHHHHH
Q 016128 282 GLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 282 ~~~~~~~~~~~l~~~~~ 298 (394)
....|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 33345555555555444
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.05 E-value=2.6e-08 Score=94.48 Aligned_cols=233 Identities=11% Similarity=0.127 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHhhccchhhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHH
Q 016128 147 SLKCVTSVLSACADLSALKLGKETHGHVIRA-DLNK---DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM 222 (394)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 222 (394)
+...|-..|......++.++|.++.++++.. ++.- -..+|.++++.-...|.-+...++|++..+.......|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445666677777777777777777776543 1111 23455666666666666677777777776654444557777
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc
Q 016128 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302 (394)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (394)
...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+...-..........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777665 23455667777777777777777777777776531111234445555566667777
Q ss_pred HHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC--CCCC-chHHHHHHHHhhcCCcccHHHHHH
Q 016128 303 LDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME--PENP-TPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 303 ~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
.+++..+|+.... |... .|+.+++.-.++|+.+.+..+|+++..+. |... ..|..++..--+.|+-+.++.+=.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 7777777777665 4444 77777777777777777777777777765 3222 234445555555566665555544
Q ss_pred Hhhh
Q 016128 377 MIND 380 (394)
Q Consensus 377 ~m~~ 380 (394)
++.+
T Consensus 1696 rA~E 1699 (1710)
T KOG1070|consen 1696 RAKE 1699 (1710)
T ss_pred HHHH
Confidence 4443
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=3.7e-07 Score=82.63 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=152.8
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc------------CCChhHHHHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG------------SRNILTWNTMIAGM 88 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~ll~~~ 88 (394)
|...|+.+.|.+-...++ +..+|..+.++|.+..++|-|.-.+-.|.. .++ .+-....-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 556788888877766555 456899999999999999999888877764 122 2222334445
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
...|.+++|+.+|.+.+. |..|=+.|...|.|++|+++-+.=.+..+ ..||.....-+-..+|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 678999999999998876 44566788889999999988765443333 245555566666677888888
Q ss_pred HHHHHHH----------HcC---------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhc
Q 016128 169 ETHGHVI----------RAD---------LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229 (394)
Q Consensus 169 ~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (394)
+.|++.- +.. -..|...|..-...+-..|+.+.|+.+|..... |-.+++..|-.
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVRIKCIQ 951 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhheeeEeec
Confidence 7776432 111 112444455455555566777777777766655 56677777777
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
|+.++|-.+-++- -|......|.+.|-..|++.+|..+|.+..
T Consensus 952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7777777665442 255555567777878888888887776654
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.3e-07 Score=82.10 Aligned_cols=216 Identities=15% Similarity=0.169 Sum_probs=148.1
Q ss_pred HHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 016128 55 MYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEA 132 (394)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 132 (394)
-+.+.|++.+|.-.|+.... +.+...|.-|.......++-..|+..+.+..+.... |..+.-.|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 35567888888888887654 346677888888888888888888888888876433 566777777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-----------HHhhccchhhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 133 FKLFEKMQSTGMVPSLKCVTSVL-----------SACADLSALKLGKETHGHV-IRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 133 ~~~~~~m~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
++.++.-+....+ |..+. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888776543211 00000 1122223344444444444 44444577778888888888888888
Q ss_pred HHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 201 WARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 201 ~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
+|...|+..... |.|...||.|...++...+..+|+.-|++.++. .|+ ......|.-+|...|.+++|.+.|-..+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888888876554 667777888888888888888888888888775 444 2344456667788888888877765543
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=5.5e-08 Score=76.26 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
|.+... ..+-..+...|+-+....+........ .-|.......+......|++..|...+++... .-++|...|+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~ 139 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNL 139 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhH
Confidence 333333 334444444455554444444433221 11333333344445555555555555555543 33444555555
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (394)
+.-+|.+.|++++|..-|.+..+ |+.. ..+.+...+.-.|+.+.|..++.......+.++.+-..+..+....|+++
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 55555555555555555555444 3333 55555555555555555555555555555555555555555555555555
Q ss_pred cHHHH
Q 016128 370 DVGRI 374 (394)
Q Consensus 370 ~a~~~ 374 (394)
+|..+
T Consensus 220 ~A~~i 224 (257)
T COG5010 220 EAEDI 224 (257)
T ss_pred HHHhh
Confidence 55443
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.01 E-value=2e-08 Score=78.91 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=54.0
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH-HhcCc--HHH
Q 016128 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL-GRSGR--LDE 305 (394)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 305 (394)
.++.++++..+++..+.. +.|...|..+...|...|++++|...++...+. .+.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 344444444444444432 224444555555555555555555555544431 122333444444432 33343 245
Q ss_pred HHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 306 ARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 306 a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
|.+++++..+ |+.. .+..+...+...|++++|+..|+++.+..|++
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5555554443 3333 44444444445555555555555555544443
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=1.4e-07 Score=77.31 Aligned_cols=183 Identities=12% Similarity=0.078 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCCh---hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDP---AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFV 255 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 255 (394)
....+..+...+...|+++.|...|+++... |.++ ..+..+..++.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556666777777888888888888876554 3333 34566777788888888888888888765322111 1344
Q ss_pred HHHHHHHcc--------CCHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHH
Q 016128 256 AVLSACGHA--------GHVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLG 326 (394)
Q Consensus 256 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 326 (394)
.+..++... |+.++|.+.++.+.+. .|+. .....+... +...... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH----------HHHHHHHHH
Confidence 444444443 6788888888888753 3332 222222111 0011100 001224566
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENP---TPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.+...|++++|+..++++.+..|.++ ..+..++.++.+.|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78899999999999999999876654 67899999999999999999999887754
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=3.9e-08 Score=87.53 Aligned_cols=214 Identities=12% Similarity=-0.011 Sum_probs=170.2
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhc
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (394)
.-..+...+...|-...|..++++.. .+..++.+|...|+..+|..+..+..++++++..|..+.+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33455666777788888888887653 456688889999999999998888777788888888888888777
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+. -+....+|-.+.-+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHH
Confidence 7788888888765332 1112222233468899999998887753 234556788888888899999999999
Q ss_pred HHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 310 IRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 310 ~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
|..... |+.. .||++-.+|.+.|+..+|...+.++.+.+-.+..+|....-.....|.+++|.+.+.++.+.
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 988876 8888 99999999999999999999999999988888888888888899999999999999988764
No 106
>PLN02789 farnesyltranstransferase
Probab=98.98 E-value=2.4e-07 Score=78.18 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=90.0
Q ss_pred chHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCCh--hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 016128 199 PSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEY--ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 199 ~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
+++++.+++++... |.+..+|+.....+.+.|+. ++++.+++++.+...+ +..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444443322 33333444333333333331 3444445444444322 44444444444444555555555555
Q ss_pred HchhcCCCCCCHhhHHHHHHHHHhc---Cc----HHHHHHHHHhCCC--CChh-hHHHHHHHHHhc----CCchHHHHHH
Q 016128 276 MMDDDFGLKPKQEHFGCMVDLLGRS---GR----LDEARELIRELPE--PTVS-VYHSLLGACWCH----LNSDLGEEMA 341 (394)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~----g~~~~a~~~~ 341 (394)
++.+. + +.+...|+.....+.+. |. .+++..+..+++. |+.. .|+.+...+... ++..+|.+.+
T Consensus 167 ~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 55442 1 22233333333222222 11 2345555544443 5555 777777666652 3445677777
Q ss_pred HHHHhhCCCCCchHHHHHHHHhhcC------------------CcccHHHHHHHhh
Q 016128 342 MKLQEMEPENPTPFVILSNIYAGLG------------------RWEDVGRIRQMIN 379 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 379 (394)
.++...+|.++.++..|+..|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 7777777878888888888887532 2356777777773
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.96 E-value=2.5e-07 Score=85.32 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCC----ChhHHHHHHHH
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR----NILTWNTMIAG 87 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ll~~ 87 (394)
..|..|-..|+...+...|.+.|+...+.+ +.+...+....+.|+...+++.|..+.-...+.. -...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 456666666666666667777777766655 5566666777777777777777777644333211 11123233444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHhhccchhh
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTS--VLSACADLSALK 165 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--l~~~~~~~~~~~ 165 (394)
|.+.++...|..-|+......++ |...|..++.+|...|++..|+++|.+.... .|+. +|.. ....-+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence 55666777777777766665443 6777777777888888888888877776553 3332 2222 222345667777
Q ss_pred HHHHHHHHHHH
Q 016128 166 LGKETHGHVIR 176 (394)
Q Consensus 166 ~a~~~~~~~~~ 176 (394)
++...+..+..
T Consensus 648 eald~l~~ii~ 658 (1238)
T KOG1127|consen 648 EALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 108
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.1e-05 Score=70.66 Aligned_cols=318 Identities=12% Similarity=0.078 Sum_probs=188.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016128 51 ALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128 (394)
Q Consensus 51 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 128 (394)
+=++.+.+.|++++|.+...++.. +.+...+..-+-+.++.++|++|+.+.+.-... ..+..-+..=+.+..+.+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 345567788999999999999876 456677888888899999999999666542211 1111111122344557899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC---------------------------
Q 016128 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK--------------------------- 181 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------- 181 (394)
.++|+..++-+. ..+..+...-...+.+.|++++|..+|+.+.+.+...
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 999999888322 1233466667788999999999999999986543211
Q ss_pred CHHHHHH---HHHHHHHcCCchHHHHHHHHh--------hcCCCC---hh-----hHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 182 DESMATA---LISMYMKCGQPSWARRFFDQF--------EIKPDD---PA-----FWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 182 ~~~~~~~---l~~~~~~~g~~~~a~~~~~~~--------~~~~~~---~~-----~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
...+|.. ....+...|++.+|+++++.. .....+ .. .-..|.-.+...|+..+|..++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1112222 233456778999999998876 111111 11 1234555677789999999999888
Q ss_pred HHcCCCCCHhhH----HHHHHHHHcc---------------------------------------------CCHHHHHHH
Q 016128 243 QQEKVKPNSASF----VAVLSACGHA---------------------------------------------GHVDKALQI 273 (394)
Q Consensus 243 ~~~~~~~~~~~~----~~l~~~~~~~---------------------------------------------~~~~~a~~~ 273 (394)
.+... +|.... |.|+..-... +..+.+.++
T Consensus 251 i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77653 333221 1111110000 000111111
Q ss_pred HHHchhcCCCCCCHhhHHHHHHHHH--hcCcHHHHHHHHHhCCC--CChh--hHHHHHHHHHhcCCchHHHHHHHHH---
Q 016128 274 FTMMDDDFGLKPKQEHFGCMVDLLG--RSGRLDEARELIRELPE--PTVS--VYHSLLGACWCHLNSDLGEEMAMKL--- 344 (394)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~--- 344 (394)
-. ...+..|. ..+..++.... +...+.++.+++....+ |... +.-..++.....|+++.|++++...
T Consensus 330 ~a---~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 330 SA---SLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HH---hCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 00 01011222 22333333322 22235666676666655 4332 5555666677888888888888833
Q ss_pred -----HhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 345 -----QEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 345 -----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.+.. ..|.+...+...+.+.++.+.|..++.+...
T Consensus 406 ~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 406 WKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred hhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 2222 3556777777778888888888888877654
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.95 E-value=8.5e-07 Score=83.49 Aligned_cols=237 Identities=10% Similarity=0.050 Sum_probs=116.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL 155 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 155 (394)
+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++..++..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4455666666666666666666666655544 333 22333333345555554443333 1 22
Q ss_pred HHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhh
Q 016128 156 SACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYES 234 (394)
Q Consensus 156 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 234 (394)
.......++..+..+...+...+ -+...+..+..+|-+.|+.++|...++++... |.++.+.|.+...|... +.++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22222333333333333333322 23335555666666666666666666665444 55666666666666666 6666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 235 AVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
|.+++.+.... +...+++..+..+|.++... .+.+...+-.+.+.....-....+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~-------- 222 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRL-------- 222 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchh--------
Confidence 66666665543 33344555555555555542 222222222222221111001111
Q ss_pred CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 315 EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 315 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
..++-.+...|...++++++..+++.+.+.+|.|..+...++..|.
T Consensus 223 ---~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 ---VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ---HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1133334444555555555555555555555555555555555554
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=1.4e-06 Score=78.26 Aligned_cols=135 Identities=18% Similarity=0.258 Sum_probs=78.9
Q ss_pred HHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (394)
+.+.....+|.+|+.+++.+.........|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 444555667777777777766644444446667777777777777777765431 23445666777777777
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
|.++-.+.. |.......|..-..-+-+.|++.+|.+++-.+.+|+.. +..|-++|..+..+++.
T Consensus 810 a~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 810 AFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHH
Confidence 777665554 33444555555555566666666666666555555332 23344444444444443
No 111
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=3.1e-06 Score=71.56 Aligned_cols=206 Identities=11% Similarity=0.109 Sum_probs=125.9
Q ss_pred HHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH-
Q 016128 54 DMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNG-RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR- 129 (394)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~- 129 (394)
.++...++.++|+.+.+++.. +.+..+|+.--..+...| ++++++..++++.+...+ +..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 334445667777777777654 223344555445555555 567777777777776444 555666555455555542
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCc----hH
Q 016128 130 -FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC---GQP----SW 201 (394)
Q Consensus 130 -~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 201 (394)
++++.+++++.+.. +-|..+|+....++...|+++++++.++++++.++. +...|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56677777777654 236667777777777777777788777777776643 455555554444443 222 34
Q ss_pred HHHHH-HHhhcCCCChhhHHHHHHHHhhc----CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 202 ARRFF-DQFEIKPDDPAFWNAMISGYGRN----GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 202 a~~~~-~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
...+. +.+...|.+...|+-+...+... ++..+|.+.+.+..+.+ ..+...+..|+..|+.
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 55555 33455577888888887777763 34456777777766543 2356667777777764
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=5.2e-08 Score=72.49 Aligned_cols=122 Identities=11% Similarity=-0.072 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
.++++..+. .|+ .+..+...+...|++++|...|+.... --+.+...+..+..++.+.|++++|...|++...
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555443 233 344566677778888888888888764 2344567777788888888888888888888776
Q ss_pred -CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 316 -PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 316 -~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
|+.. .+..+..++...|++++|+..|+++.+..|.++..+.....+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5555 788888888888888888888888888888888877776665543
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3.4e-09 Score=56.42 Aligned_cols=32 Identities=44% Similarity=0.840 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 016128 108 GFKPDPATWNSMISGFSQLGMRFEAFKLFEKM 139 (394)
Q Consensus 108 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 139 (394)
|+.||..||+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=1.9e-09 Score=57.39 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHhhhhHhHHHHHHHHHHH
Q 016128 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLT 37 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 37 (394)
|+.||..||++||.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666655
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.87 E-value=3.2e-07 Score=85.32 Aligned_cols=161 Identities=8% Similarity=0.025 Sum_probs=123.6
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG 291 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (394)
+.++..+-.|.....+.|.+++|..+++...+. .| +......++..+.+.+++++|...++.... .-+.+.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 567888888999999999999999999998886 44 456677788888999999999999998886 3344566777
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCc
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (394)
.+..++.+.|++++|..+|+++.. |+.. ++..+..++...|+.++|...|+++.+...+....|+.++. +.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 788888999999999999999885 5555 88888899999999999999999998877555555544432 33
Q ss_pred ccHHHHHHHhhhccc
Q 016128 369 EDVGRIRQMINDRQL 383 (394)
Q Consensus 369 ~~a~~~~~~m~~~~~ 383 (394)
..-..+++.+.-.+.
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 233 NADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHcCcccc
Confidence 333455555544433
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=4.1e-08 Score=73.05 Aligned_cols=106 Identities=11% Similarity=-0.031 Sum_probs=91.8
Q ss_pred HHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 272 QIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.+++...+ +.|+ .+..+...+...|++++|...|+.... |+.. .|..+..++...|++++|+..|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555543 2344 455678889999999999999999876 6666 99999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 349 PENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
|.++.++..++.++.+.|++++|+..++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988754
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=4.4e-05 Score=66.39 Aligned_cols=132 Identities=8% Similarity=0.087 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIA 86 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~ 86 (394)
+-|+.+|..||+-+..+ .++++++.++++...- +.++..|..-+..-....+++..+++|.+... .-+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45889999999998777 9999999999998654 66788999999999999999999999999764 456777777776
Q ss_pred HHHhc-CCHHH----HHHHHHHHHh-cCCCCC-HHHHHHHHHHH---------HccCCHHHHHHHHHHHHh
Q 016128 87 GMMLN-GRSEK----AMELFEGLAH-EGFKPD-PATWNSMISGF---------SQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 87 ~~~~~-~~~~~----a~~~~~~m~~-~g~~p~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~m~~ 141 (394)
.--+. |+... ..+.|+-... .|+.+- ...|+..+..+ ..+.+.+...++|+++..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 54432 33222 3334444333 354442 23445444332 333455667777777764
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.4e-05 Score=61.83 Aligned_cols=259 Identities=15% Similarity=0.127 Sum_probs=163.9
Q ss_pred CCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHH
Q 016128 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMI 85 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll 85 (394)
+..|+...|+ ++.+.-.|++..++..-....... .+...-..+.++|...|.+....+-...-. .+.......+.
T Consensus 5 ~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a 79 (299)
T KOG3081|consen 5 EAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLA 79 (299)
T ss_pred ccCcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHH
Confidence 3444433333 344555677777776555433321 334444455566767777665544443333 33444444444
Q ss_pred HHHHhcCCHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh
Q 016128 86 AGMMLNGRSEK-AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 86 ~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (394)
......++.++ ..++.+.+.......+......-...|...|++++|++...... +......=...+.+..++
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 44444444433 33455555555444344444445567889999999998876621 333444445667788889
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIF 239 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (394)
+.|.+.+++|.+.. +..+.+.|..++.+ .+++.+|.-+|+++..+ +|++.+.+....++...|++++|..++
T Consensus 154 d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 154 DLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 99999999998764 55666667776655 35688999999999884 888888888999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHchh
Q 016128 240 DLMQQEKVKPNSASFVAVLSACGHAGHV-DKALQIFTMMDD 279 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 279 (394)
+........ ++.+...++..-...|.. +-..+.+.+++.
T Consensus 231 ~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 231 EEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 998887544 677776666655555554 444556666654
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=8.6e-07 Score=72.60 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=121.0
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-h---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHH
Q 016128 44 SDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-I---LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDP--ATW 116 (394)
Q Consensus 44 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 116 (394)
.....+..+...+.+.|++++|...|+++.. .|+ . .++..+..++.+.|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455677777788888999999888888764 232 2 35667778888889999999999888876332111 245
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHH
Q 016128 117 NSMISGFSQL--------GMRFEAFKLFEKMQSTGMVPSL-KCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187 (394)
Q Consensus 117 ~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 187 (394)
..+..++... |++++|.+.|+++.+.. |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 5555555544 67788888888887652 332 22222111100 000 00 01112
Q ss_pred HHHHHHHHcCCchHHHHHHHHhhcCCC----ChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 188 ALISMYMKCGQPSWARRFFDQFEIKPD----DPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
.+...|.+.|++++|...++......+ .+..+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466778899999999999998766522 3467889999999999999999999888765
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=7.3e-06 Score=64.67 Aligned_cols=250 Identities=15% Similarity=0.078 Sum_probs=150.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG 167 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 167 (394)
+.-.|.+..++..-+...... -++..-.-+.++|...|++...+. +..... .|....+..+.......++.+..
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 334566665555544433321 233333444556666665544322 222221 33333333333333334443333
Q ss_pred -HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 168 -KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
.++.+.+.......+......-...|+..|++++|.+..... .+......=+..+.+..+.+-|...+++|.+-
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 234444444443334344444456678888888888887762 34444444455667778888888888888874
Q ss_pred CCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-
Q 016128 247 VKPNSASFVAVLSACGH----AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS- 319 (394)
Q Consensus 247 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~- 319 (394)
.+..|.+.|..++.+ .+.+..|.-+|+++.+ +.+|++.+.+....++...|++++|..++++... ++..
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 266777777777654 3567888889999876 5778888888888888888999999998888876 3444
Q ss_pred hHHHHHHHHHhcCCchH-HHHHHHHHHhhCCCCC
Q 016128 320 VYHSLLGACWCHLNSDL-GEEMAMKLQEMEPENP 352 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~ 352 (394)
+...++.+-...|...+ ..+.+..+....|..+
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666655555665544 4566677776667554
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.6e-05 Score=74.09 Aligned_cols=261 Identities=13% Similarity=0.132 Sum_probs=172.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 016128 78 ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSA 157 (394)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 157 (394)
+..|..+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.|++-.+.+....+..-.|... ..|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345777777777777777776655321 266677777777777777777777766665554444433 456777
Q ss_pred hhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHH
Q 016128 158 CADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVE 237 (394)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (394)
|++.+++.+.++++ ..|+......+..-|...|.++.|.-+|..+ ..|..|...+...|++..|.+
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHH
Confidence 77777766655544 2355555566666677777777776666443 348888888888899888887
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCC
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPT 317 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (394)
.-++. .+..||..+-.+|...+.+.-| +|..- ++-....-...++..|-..|-+++.+.+++....-.
T Consensus 1242 ~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1242 AARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred Hhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 65543 3667888888888776665443 23211 333445567788999999999999999998877622
Q ss_pred hh---hHHHHHHHHHhcCCchHHHHHHHHHHhh-C-C------CCCchHHHHHHHHhhcCCcccHHH
Q 016128 318 VS---VYHSLLGACWCHLNSDLGEEMAMKLQEM-E-P------ENPTPFVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 318 ~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~------~~~~~~~~l~~~~~~~g~~~~a~~ 373 (394)
.. .|+.|.-.|++- ++++..+.++-.... + | .....|..+...|.+-..|+.|.-
T Consensus 1310 RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 22 777777777664 456665555544431 1 1 244567888888888777777643
No 122
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.82 E-value=1.8e-06 Score=77.54 Aligned_cols=105 Identities=14% Similarity=0.257 Sum_probs=45.2
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
.....|.+|..+++.+..... -...|..+...|...|+++.|+++|-+... ++-.|..|.+.|+++.|.++
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhccccHHHHHHH
Confidence 334445555555544443321 122334444455555555555555533222 34444455555555555554
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (394)
-.+.. |.......|..-..-+-..|++.+|++++
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 43322 22222333333333344444444444443
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=6.6e-05 Score=65.37 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=80.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
|-.+++.-.+..-...|..+|.++.+.+..+ +....++++..+|. ++.+.|.++|+.-.+. ...++.-....+..+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFL 445 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHH
Confidence 5566666666666777777777777766555 55566666666654 6677777777766653 223344445566666
Q ss_pred HhcCcHHHHHHHHHhCCC----CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 298 GRSGRLDEARELIRELPE----PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
...|+-..+..+|++... ++.. .|..++.--..-|+...+.++-++....-|
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 667777777777776654 2222 677777766777777777666665555443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=1.1e-06 Score=69.18 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHH-HhcCC--chHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGAC-WCHLN--SDLG 337 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~-~~~g~--~~~a 337 (394)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++... |+.. .+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666554 3345666777777777777777777777777765 5555 666666653 45555 4777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.++++++.+.+|.++.++..++..+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777777777777777777777777777777777777776644
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=6.6e-06 Score=74.87 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK 195 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (394)
|.-....+-..|+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++ .-|......|.+.|-.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhh
Confidence 33333333444555555555544432 33444444555555555554433 1244444556666666
Q ss_pred cCCchHHHHHHHHh
Q 016128 196 CGQPSWARRFFDQF 209 (394)
Q Consensus 196 ~g~~~~a~~~~~~~ 209 (394)
.|++.+|..+|.+.
T Consensus 980 ~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRA 993 (1416)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666666553
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=2e-06 Score=80.21 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=121.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 179 LNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
...+...+..|.....+.|.+++|..+++.+... |.+...+..++..+.+.+++++|...+++..+.... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3456888999999999999999999999998776 667777899999999999999999999999987532 56677788
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHH
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLL 325 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 325 (394)
..++.+.|++++|..+|+++.. ..+-+...+..+...+...|+.++|...|++..+ +....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8899999999999999999986 3334578889999999999999999999999876 4444555554
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=7.1e-06 Score=64.69 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=93.9
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcC
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNG 230 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 230 (394)
..+-..+...|+-+....+........ ..+......++....+.|++..|...|++.... |+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 334444555555555555544433221 224445555666666667777777666665444 666666677777777777
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 310 (394)
+.+.|..-|.+..+... -+...++.+.-.+.-.|+++.|..++...... -.-|..+-..+.......|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777776666666532 24455566666666667777777766666542 2234555566666666667777766665
Q ss_pred HhCCCC
Q 016128 311 RELPEP 316 (394)
Q Consensus 311 ~~~~~~ 316 (394)
..-..+
T Consensus 226 ~~e~~~ 231 (257)
T COG5010 226 VQELLS 231 (257)
T ss_pred cccccc
Confidence 554443
No 128
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=5.9e-05 Score=70.47 Aligned_cols=293 Identities=14% Similarity=0.174 Sum_probs=168.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhH-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILT-----WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSM 119 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 119 (394)
|+...+.-+.++...+-..+-+++++++.-.+++.+ -|.|+-...+ -+...+.+..+++-.-+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------H
Confidence 455566667777777777777777777654443322 2333333333 234445555555443311 11 2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
.......+-+++|..+|++.. .+....+.|+. ..+.++.|.++-++. ..+.+|..+..+..+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCch
Confidence 233445556677777776542 23344444443 234455555544432 2456777788888888888
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 200 SWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
.+|.+.|-+. .|+..|..+++...+.|.+++-.+.+...++..-.|...+ .|+-+|++.++..+.++++
T Consensus 1121 ~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi----- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI----- 1189 (1666)
T ss_pred HHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-----
Confidence 7777766433 5677788888888888888888888777776655555443 5677777777776655442
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHh-------------
Q 016128 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQE------------- 346 (394)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------- 346 (394)
..|+......+..-|...|.++.|.-+|.... -|..|...+...|+++.|....+++-.
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS-----N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS-----NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 13555555556666666666666665554332 445555555555555555544444321
Q ss_pred -----------hC-CCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 347 -----------ME-PENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 347 -----------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
++ -....-+..|+..|...|-+++.+.+++..
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 11 112334556677777777777777776653
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=1.1e-05 Score=76.31 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=139.7
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNI-LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
+.+...+..|+..+...+++++|.++.+.... .|+. ..|-.+...+.+.++.+++..+ .++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 34566788888888888999999888886654 3433 3333344466666665554443 233
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
.......++.-+..++..|... .-+...+..+..+|.+.|+.+++..+++++++.+ +-++.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3334444554444445555543 2344566777777888888888888888887777 44777777788777777 778
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 201 WARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
+|.+++.+... .+...+++..+.++|.++....+. +...+. .+.+.+...
T Consensus 167 KA~~m~~KAV~-------------~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~ 216 (906)
T PRK14720 167 KAITYLKKAIY-------------RFIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGH 216 (906)
T ss_pred HHHHHHHHHHH-------------HHHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhh
Confidence 88777665544 255566777777777777665321 222221 222222221
Q ss_pred CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHH
Q 016128 281 FGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACW 329 (394)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~ 329 (394)
.+..--..++..+...|...++++++..+++.+.+ |+.. ....++.+|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 12222334455555566666666666666666665 3333 5555555554
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=3.1e-06 Score=72.50 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=85.9
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
+...|++++|+..++.+.. ..+-|+.........+.+.|+.++|.+.++.+.. |+.. .+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3456788888888888775 4445556666667778888888888888888776 6655 677777888888888888
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
+.+++.....+|.++..|..|+.+|...|+..++.....+.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88888888888888888888888887777666665554444
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=6.6e-06 Score=64.42 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 126 LGMRFEAFKLFEKMQS---TG-MVPSLKC-VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
..+.++..+++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3455666666666542 22 3333322 2233334444455555555555544332 222222222222233344555
Q ss_pred HHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 201 WARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 201 ~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
+|.++++.+... |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 555555544333 333333444444444444444454444444443 23344555555555555555555555554444
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.3e-05 Score=68.91 Aligned_cols=142 Identities=13% Similarity=0.056 Sum_probs=111.0
Q ss_pred HHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 269 (394)
.+...|++++|+..++.+... |.|+..+......+...++..+|.+.++++... .|+ ......+.+++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 445678888888888887665 667777777888888889999999999888876 455 4556677888888899988
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
|+.+++.... ..+.|+..|..|.++|...|+..++.....+ .+...|+++.|...+..+.+...
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE--------------~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE--------------GYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH--------------HHHhCCCHHHHHHHHHHHHHhcc
Confidence 8888888876 5667788888889999988888887755544 56778888888888888887664
Q ss_pred CC
Q 016128 350 EN 351 (394)
Q Consensus 350 ~~ 351 (394)
.+
T Consensus 457 ~~ 458 (484)
T COG4783 457 LG 458 (484)
T ss_pred CC
Confidence 33
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=3.5e-07 Score=67.70 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=69.5
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-- 315 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 315 (394)
.+++....... +......+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|..++++...
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444443211 3344555556666677777777777776542 234556666666777777777777777766654
Q ss_pred CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 316 PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
|+.. .+..+..++...|++++|...++++.+..|.+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4443 6666666777777777777777777777765544
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=6.9e-07 Score=77.02 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=91.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC 330 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~ 330 (394)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++... |... .+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345556666677888888888888764 244 344567777777777788888777765 4444 66666777888
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 331 HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888888888775
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=2e-06 Score=63.63 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
....+...+...|++++|.+.|+.+.. |+.. .+..+..++...|++++|...++++.+.+|.++..+..++.++...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 344445555556666666666655543 3333 5555555555566666666666666566665666666666666666
Q ss_pred CCcccHHHHHHHhhhc
Q 016128 366 GRWEDVGRIRQMINDR 381 (394)
Q Consensus 366 g~~~~a~~~~~~m~~~ 381 (394)
|++++|...++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666555543
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=5e-07 Score=66.17 Aligned_cols=96 Identities=8% Similarity=-0.063 Sum_probs=83.2
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
....-.+...+...|++++|..+|+-+.. |... -|-.|..++...|++++|+..|.++..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455566677889999999999998765 6666 88889999999999999999999999999999999999999999
Q ss_pred hcCCcccHHHHHHHhhhcc
Q 016128 364 GLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~ 382 (394)
..|+.+.|++.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=5.3e-06 Score=64.95 Aligned_cols=201 Identities=13% Similarity=0.177 Sum_probs=149.2
Q ss_pred ccchhhHHHHHHHHHHH---cC-CCCCH-HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChh
Q 016128 160 DLSALKLGKETHGHVIR---AD-LNKDE-SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYE 233 (394)
Q Consensus 160 ~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 233 (394)
...+.++..+++.+++. .| ..++. .+|..++-+....|+.+.|...++++... |.+...-..-.-.+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 34577888888888754 23 34443 45566777778889999999999998776 334333222233455689999
Q ss_pred hHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 234 SAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
+|+++|+.+.+.+ +.|..++..=+...-..|+--+|++-+....+ .+..|...|..+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999886 34666776666666667887788888888877 67889999999999999999999999999988
Q ss_pred CC--CChh-hHHHHHHHHHhcC---CchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 314 PE--PTVS-VYHSLLGACWCHL---NSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 314 ~~--~~~~-~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.- |-.. .+..+...+...| +.+.+.++|.+++++.|.+...+..+-..+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 75 6666 6667776655444 6778899999999999866666555544433
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.52 E-value=3.8e-05 Score=71.55 Aligned_cols=350 Identities=13% Similarity=0.002 Sum_probs=194.1
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIE-KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIA 86 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~ 86 (394)
+..........+++..+++.|..+.-..-+.. ...-...|....-.|...++...|+.-|+.... +.|...|..+..
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGe 604 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGE 604 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34556677788888889998888722222111 111222344455567788999999999998764 557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHh
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNS--MISGFSQLGMRFEAFKLFEKMQST------GMVPSLKCVTSVLSAC 158 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~l~~~~ 158 (394)
+|.+.|++..|++.|.+.... .|+. +|.. ..-.-+..|.+.+|+..+...... +..--..++-.+...+
T Consensus 605 AY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~ 681 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDS 681 (1238)
T ss_pred HHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999988875 4432 2222 233456789999999998887542 1111122333333334
Q ss_pred hccchhhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCC
Q 016128 159 ADLSALKLGKETHGHVIRA-------DLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGE 231 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (394)
.-.|-...+..+++..++. ....+...+-.+ ..|..+|-+....-++......+..-.-..+.
T Consensus 682 ~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 682 AITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 4444444444444443321 111111111111 22333343333111222222222221222222
Q ss_pred h---h---hHHHHHHHHHHcCCCCCHhhHHHHHHHHHc--------cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 232 Y---E---SAVEIFDLMQQEKVKPNSASFVAVLSACGH--------AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 232 ~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
. + -+.+.+-.-.. ...+..+|..++..|.+ ..+...|+..+....+ -...+..+|+.|.-.
T Consensus 752 l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl- 826 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL- 826 (1238)
T ss_pred CcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-
Confidence 1 1 11111111111 12234444444443332 1122355555555543 223344555555443
Q ss_pred HhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHH
Q 016128 298 GRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRI 374 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 374 (394)
...|++.-|...|-+-.. |... +|..+...+.+..+++.|...|.++..++|.|...|......-...|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 555677777666654443 5555 8888888888888888888888888888888888887777777777766666666
Q ss_pred HHH
Q 016128 375 RQM 377 (394)
Q Consensus 375 ~~~ 377 (394)
|.-
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 544
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.48 E-value=8.9e-06 Score=70.28 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.....|+..+...++++.|..+|+++... ++.....++..+...++-.+|++++++..+.. +-+...+..-...|.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 34455666677778888999999988874 45556667888888888888999988888653 3366666667777888
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.++++.|..+.+++.. -.+.+..+|..|..+|.+.|+++.|+..++.++-
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8999999999988875 3333456888899999999999999988888864
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=1.6e-05 Score=59.46 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=41.6
Q ss_pred HHhhccchhhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChh
Q 016128 156 SACADLSALKLGKETHGHVIRADLNKD--ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYE 233 (394)
Q Consensus 156 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (394)
..+...|++++|...|+.+......++ ......|...+...|++++|...++.....+..+..+......|.+.|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 344445555555555555544432111 112233445555555555555555554433334444455555555555555
Q ss_pred hHHHHHHH
Q 016128 234 SAVEIFDL 241 (394)
Q Consensus 234 ~a~~~~~~ 241 (394)
+|...|+.
T Consensus 136 ~A~~~y~~ 143 (145)
T PF09976_consen 136 EARAAYQK 143 (145)
T ss_pred HHHHHHHH
Confidence 55555544
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.41 E-value=6.1e-07 Score=48.53 Aligned_cols=33 Identities=45% Similarity=0.851 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD 112 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 112 (394)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.39 E-value=7.3e-07 Score=47.84 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKP 111 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 111 (394)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.36 E-value=7.1e-06 Score=71.21 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=103.6
Q ss_pred hcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 016128 41 EKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRN-----ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPAT 115 (394)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 115 (394)
+.+.+......+++.+....+++.+..++.+....|+ ..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3466777788888888888899999999998886432 34567999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998777777778887777777655
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=4.1e-05 Score=57.20 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=37.6
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC
Q 016128 224 SGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301 (394)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (394)
..+...|++++|...|+........|.. .....+...+...|++++|...++.... -...+..+......|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCC
Confidence 4444455555555555555544311111 1222334444455555555555544321 1222333444444555555
Q ss_pred cHHHHHHHHHh
Q 016128 302 RLDEARELIRE 312 (394)
Q Consensus 302 ~~~~a~~~~~~ 312 (394)
++++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555555443
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.34 E-value=3.5e-06 Score=57.79 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
+..+...+...|++++|...+++..+ |+.. .+..+...+...|++++|.+.++.+....|.++..+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44556667777788888877777654 4443 66677777777888888888888888888877778888888888888
Q ss_pred CcccHHHHHHHhhhc
Q 016128 367 RWEDVGRIRQMINDR 381 (394)
Q Consensus 367 ~~~~a~~~~~~m~~~ 381 (394)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776643
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.32 E-value=0.0028 Score=58.99 Aligned_cols=219 Identities=12% Similarity=0.074 Sum_probs=130.2
Q ss_pred hhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHH--HHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHH
Q 016128 22 ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDM--YLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKA 97 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a 97 (394)
...+++..|.+..+.+.+.. |+.. |...+.+ ..+.|+.++|..+++.... ..|..|...+-..|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35678888888888877653 3332 2233333 4577999999988887664 34777888888889999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc----------hhhHH
Q 016128 98 MELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS----------ALKLG 167 (394)
Q Consensus 98 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a 167 (394)
..+|++..+. .|+..-...+..+|.+.+.+.+-.+.--+|-+. .+-+...|.++++...+.- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988876 567777777778888887776544444444332 3334555556665553321 12345
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHH-hhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 168 KETHGHVIRAD-LNKDESMATALISMYMKCGQPSWARRFFDQ-FEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
...++.+.+.+ ..-+..=...-...+...|++++|..++.. .... +.+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666665544 111111111223334556778888888733 2221 1222223344455555555555555555555
Q ss_pred HcC
Q 016128 244 QEK 246 (394)
Q Consensus 244 ~~~ 246 (394)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 543
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.31 E-value=0.0011 Score=61.62 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=66.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG--FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (394)
.....+++.+|++....+.++ .|+.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 344566777777777776665 33332 2222222 45667777777766666554433 666777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW 201 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (394)
++|..+|+...... |+......+..+|.+.+.+.+
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 77777777776653 445555556666666665543
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.30 E-value=8.4e-06 Score=58.72 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=53.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh---h-hHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGL-KPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTV---S-VYHSLL 325 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~-~~~~l~ 325 (394)
++..++..+...|++++|...+..+.....- ......+..+..++.+.|++++|...|+.+.. |+. . ++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555666666666666666543111 11123444455566666666666666665543 331 1 455555
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
.++...|+.++|...++++.+..|+++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 55555666666666666666666555443
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.5e-06 Score=46.98 Aligned_cols=33 Identities=36% Similarity=0.685 Sum_probs=29.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS 147 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 147 (394)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999888887
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.3e-06 Score=46.87 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 016128 114 ATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 146 (394)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=2.2e-06 Score=74.21 Aligned_cols=107 Identities=13% Similarity=0.050 Sum_probs=89.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.-...+...|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..++++.. |+.. .|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3455667889999999999999863 344567888888999999999999999999977 6666 8999999999999
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
++++|+..|+++.+++|.++.....+..+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998877776555443
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=8.5e-06 Score=65.61 Aligned_cols=103 Identities=16% Similarity=0.046 Sum_probs=57.5
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~ 338 (394)
.+.+++++|...|.+.++ -.+-|...|..-..+|.+.|.++.|.+-.+..+. |... +|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 445566666666666553 1223344445555566666666666666655555 3333 6666666666666666666
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 339 EMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
+.|+++++++|.+......|-.+-.+.+
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 6666666666666544444444444433
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.25 E-value=6.9e-07 Score=59.71 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHhCCC--CC--h-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHH
Q 016128 301 GRLDEARELIRELPE--PT--V-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIR 375 (394)
Q Consensus 301 g~~~~a~~~~~~~~~--~~--~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 375 (394)
|+++.|+.+++++.+ |+ . ..+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444555555554443 31 1 1333345555555555555555555 3444444444444455555555555555555
Q ss_pred HH
Q 016128 376 QM 377 (394)
Q Consensus 376 ~~ 377 (394)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.24 E-value=0.00023 Score=63.47 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=51.0
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHH---
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSL--- 324 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l--- 324 (394)
..+...+...+.+...+..|.++|..|-+ ...++......+++.+|..+-++.++ |++. .|...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 34444444445555556666666666542 13455566666777777766666665 3333 22222
Q ss_pred -------HHHHHhcCCchHHHHHHHHHHh
Q 016128 325 -------LGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 325 -------~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
-.+|.+.|+..+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 2567778888888888887755
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.23 E-value=9.1e-05 Score=61.96 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh-cCChhHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK-CGCLPCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
.+|..+++.+.+.+.++.|+.+|.+..+.+ ..+..+|.....+-.. .++.+.|..+|+.... +.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 578899999999999999999999998654 3345556555555344 5677779999999776 67788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDP----ATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
...|+.+.|..+|++.... .|.. ..|...+..=.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 9999999999999999876 3333 48888998888999999999999888774 344333333433
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=2.7e-05 Score=56.00 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh----hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHH
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTV----SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN---PTPFVILS 359 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 359 (394)
++..++..+.+.|++++|.+.|+.+.. |+. ..+..+..++...|+++.|...++.+....|.+ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666666666666666654 332 144455666666666666666666666655543 33455666
Q ss_pred HHHhhcCCcccHHHHHHHhhhc
Q 016128 360 NIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=4.2e-05 Score=64.31 Aligned_cols=255 Identities=15% Similarity=0.012 Sum_probs=117.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccch
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSA 163 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~ 163 (394)
...+.+..++.+|+..+...++.++. +..-|..-+..+...|++++|+--.++-.+. .|. .....-.-+++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 34455667777788888777776443 4555666666677777777776655554432 111 1122233333333444
Q ss_pred hhHHHHHHH---------------HHHHcCC-CCCHHHHHHH-HHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHH-
Q 016128 164 LKLGKETHG---------------HVIRADL-NKDESMATAL-ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISG- 225 (394)
Q Consensus 164 ~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~- 225 (394)
..+|.+.++ ....... +|.-..+..| ..++...|+.++|.+.--.+.+. .....+..++++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl-d~~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL-DATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc-ccchhHHHHhccc
Confidence 444433333 1111111 1111222211 23445556666666555444432 111112333332
Q ss_pred -HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH---HHH----------HHccCCHHHHHHHHHHchhcCCCCC-----C
Q 016128 226 -YGRNGEYESAVEIFDLMQQEKVKPNSASFVAV---LSA----------CGHAGHVDKALQIFTMMDDDFGLKP-----K 286 (394)
Q Consensus 226 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~-----~ 286 (394)
+-..++.+.++..|++.+.. .|+...-... ... ..+.|.+..|.+.+.+.+ ++.| +
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~n 286 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTN 286 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchh
Confidence 23355666666666665553 2333222111 111 124455555555555554 2222 2
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
...|........+.|+..+|+.--++..+.|.. .+..-..++...+++++|++-++++.+..
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 233333344444555555555555555553333 22222334444555555555555555544
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.19 E-value=5.3e-06 Score=52.28 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=35.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 325 LGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...+...|++++|++.|+++++..|.++..+..++.++.+.|++++|...++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666654
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.18 E-value=2.9e-05 Score=67.36 Aligned_cols=101 Identities=10% Similarity=0.014 Sum_probs=82.7
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (394)
.....+...|+++.|++.|+++.+... -+...|..+..+|...|++++|+..++.+... -+.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345567788999999999999998753 36778888899999999999999999999863 234567888899999999
Q ss_pred CcHHHHHHHHHhCCC--CChhhHHHH
Q 016128 301 GRLDEARELIRELPE--PTVSVYHSL 324 (394)
Q Consensus 301 g~~~~a~~~~~~~~~--~~~~~~~~l 324 (394)
|++++|...|++... |+.......
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999886 666643333
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.17 E-value=3.9e-05 Score=52.30 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGF-KPDPATWNSMISGFSQLG--------MRFEAFKLFEKMQSTGMVPSLKCVTS 153 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~ 153 (394)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555566778888888888888887 778888888777766542 23345666677776667777777776
Q ss_pred HHHHhh
Q 016128 154 VLSACA 159 (394)
Q Consensus 154 l~~~~~ 159 (394)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 666554
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.6e-05 Score=63.26 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=80.7
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc---CCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 284 KPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH---LNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
+-|...|-.|...|...|+++.|..-|.+... |+.. .+..+..++... ....++..+++++...+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 55677888888888888888888888887765 4444 666666555432 34567788888888888888888888
Q ss_pred HHHHHhhcCCcccHHHHHHHhhhccccccCCCC
Q 016128 358 LSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390 (394)
Q Consensus 358 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 390 (394)
|+..+...|++.+|...|+.|.+.....+|..+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 888888888888888888888887665555443
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.10 E-value=4.8e-06 Score=52.49 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=53.4
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+...+.+.|++++|...|+++.+ |+.. .+..+..++...|++++|...|+++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 56778999999999999999988 7777 999999999999999999999999999999874
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=0.00014 Score=60.92 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=70.3
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH-HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA-CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (394)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...+.. +...++.+.|.++|+...+ .++.+...+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 35555555555555666666666665432 1123333333333 2223555556666666665 344455556666666
Q ss_pred HHhcCcHHHHHHHHHhCCC--CChh----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 297 LGRSGRLDEARELIRELPE--PTVS----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
+.+.|+.+.|..+|++... +... .|...+..-.+.|+.+.+..+.+++.+.-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6666666666666666655 2221 6666666666666666666666666665554
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=4.2e-05 Score=52.24 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (394)
.+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++..... .+.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHH
Confidence 34444444555555555555544432 112233444444444445555555544444331 122223334444444444
Q ss_pred CcHHHHHHHHHh
Q 016128 301 GRLDEARELIRE 312 (394)
Q Consensus 301 g~~~~a~~~~~~ 312 (394)
|++++|...+..
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 444444444433
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.08 E-value=7e-06 Score=52.47 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC-CcccHHHHHHHhhhc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG-RWEDVGRIRQMINDR 381 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 381 (394)
+|..+...+...|++++|+..|+++++.+|.++.++..++.++.+.| ++++|++.+++..+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67788888888888999999999988888888888888888888888 788888888887653
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.08 E-value=5.7e-06 Score=43.16 Aligned_cols=29 Identities=34% Similarity=0.692 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEG 108 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 108 (394)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 167
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.07 E-value=0.0056 Score=52.69 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=95.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
|..+++.-.+..-.+.|..+|-++.+.| +.++...+++++..++. |+...|..+|+.-... ++.++.-.+..+..+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 5556666667777888999999998888 66778888888887765 8888888888876653 333344445667777
Q ss_pred HhcCcHHHHHHHHHhCCC---CCh-h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 298 GRSGRLDEARELIRELPE---PTV-S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~---~~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
.+.++-..|..+|+...+ .+. . .|..++.--...|+...+..+-+++.+.-|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 888888899999986554 221 2 7888888888888888888777777776654
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=0.00022 Score=64.78 Aligned_cols=139 Identities=12% Similarity=0.019 Sum_probs=94.7
Q ss_pred CCChhhHHHHHHHHhhc-----CChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHcc--------CCHHHHHHHHHHch
Q 016128 213 PDDPAFWNAMISGYGRN-----GEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGHA--------GHVDKALQIFTMMD 278 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 278 (394)
+.++..|...+++.... ++...|..+|++..+. .|+ ...+..+..++... .+...+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 56778888888875432 2367899999999886 344 34444443333221 12334444444433
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
.......++..|..+.......|++++|...+++... |+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2212344556777776667778999999999998887 65448888889999999999999999999999987774
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.05 E-value=0.00013 Score=49.73 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=67.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccc--------hhhHHHHHHHHHHHcCCCCCHHHHH
Q 016128 117 NSMISGFSQLGMRFEAFKLFEKMQSTGM-VPSLKCVTSVLSACADLS--------ALKLGKETHGHVIRADLNKDESMAT 187 (394)
Q Consensus 117 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 187 (394)
...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677999999999999999999 999999999999887643 3456778999999999999999999
Q ss_pred HHHHHHHH
Q 016128 188 ALISMYMK 195 (394)
Q Consensus 188 ~l~~~~~~ 195 (394)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=0.00013 Score=56.28 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=86.2
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHH
Q 016128 214 DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN--SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG 291 (394)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (394)
.....+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+++.... .+.+...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 3444577777788888888888888888876543332 356777778888888888888888887753 223455566
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 292 CMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
.+...+...|+...+..-++... ..+++|.++++++.+.+|++ +..++.-+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66667777776655543332211 12567788888888888766 4445554444443
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.05 E-value=0.0016 Score=54.85 Aligned_cols=57 Identities=7% Similarity=0.050 Sum_probs=26.6
Q ss_pred HHHHhhcc-chhhHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCCchHHHHHHHHhh
Q 016128 154 VLSACADL-SALKLGKETHGHVIRADL---NK--DESMATALISMYMKCGQPSWARRFFDQFE 210 (394)
Q Consensus 154 l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 210 (394)
+...|... |+++.|.+.|++..+.-- .+ -...+..+...+.+.|++++|.++|+++.
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33445555 677777777666543210 00 12233444555555556666665555543
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.04 E-value=0.00029 Score=51.94 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
.....+...+...|++++|.++|+.+..- |.+...|-.|..++...|++++|+..|.......+ -|+..+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33444566677788899999888887654 66677788888888888999999999988887764 47777888888888
Q ss_pred ccCCHHHHHHHHHHchhcCC
Q 016128 263 HAGHVDKALQIFTMMDDDFG 282 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~ 282 (394)
..|+.+.|.+.|+......+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc
Confidence 88999999888888776533
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.0008 Score=56.59 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=10.9
Q ss_pred HHHHHccCCHHHHHHHHHHH
Q 016128 120 ISGFSQLGMRFEAFKLFEKM 139 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m 139 (394)
...|...|++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 34455566666666666554
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=64.34 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=79.5
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccH
Q 016128 295 DLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDV 371 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 371 (394)
.-+.+.+++++|+..|.+.++ |... .|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 346678999999999999998 6665 8888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 016128 372 GRIRQMINDR 381 (394)
Q Consensus 372 ~~~~~~m~~~ 381 (394)
++.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999887754
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.99 E-value=2.3e-05 Score=50.04 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=54.0
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC-CchHHHHHHHHHHhhCC
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL-NSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 349 (394)
+...|..+...+...|++++|+..|++..+ |+.. .|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456778888888889999999999988887 7666 8888888999988 78999999999888876
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=1.9e-05 Score=52.68 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhccchhhHHHHHHHH
Q 016128 127 GMRFEAFKLFEKMQSTGMV-PSLKCVTSVLSACADLSALKLGKETHGH 173 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 173 (394)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444555555554443211 1222233344444444444444444444
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.98 E-value=5e-05 Score=58.44 Aligned_cols=93 Identities=13% Similarity=-0.077 Sum_probs=69.8
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC---hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PT---VS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (394)
....+..+...+...|++++|...|++... |+ .. ++..+...+...|++++|+..++++....|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 345566667777778888888888877753 22 22 7788888888889999999999998888888888888887
Q ss_pred HHHh-------hcCCcccHHHHHHHh
Q 016128 360 NIYA-------GLGRWEDVGRIRQMI 378 (394)
Q Consensus 360 ~~~~-------~~g~~~~a~~~~~~m 378 (394)
.++. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7777 777877666665544
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.98 E-value=1e-05 Score=42.15 Aligned_cols=30 Identities=40% Similarity=0.811 Sum_probs=22.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGM 144 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 144 (394)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888887777653
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.97 E-value=0.0037 Score=47.06 Aligned_cols=132 Identities=12% Similarity=0.146 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCC---CChhhHH
Q 016128 144 MVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKP---DDPAFWN 220 (394)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 220 (394)
+.|+...--.|..+....|+..+|...|++....-+..|..+...+.++....+++..|...++.+.+.+ .+++..-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4566666667777777788888888888777776666677777777777777788888888777765542 3445556
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
.+.+.+...|.+.+|..-|+..... -|+...-......+.++|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6677777788888888888777765 344444444445556667666655544443
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.97 E-value=0.0092 Score=51.49 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=44.8
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+..+|++.++.-.-.-+.+..| ++.+|..++.++....++++|..++..+..
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3457888888887777888888 999999999999999999999999987754
No 181
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.96 E-value=0.00016 Score=55.91 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=59.8
Q ss_pred HHHHHHhcc-CCChhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH----------
Q 016128 66 HNVFQELKG-SRNILTWNTMIAGMML-----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR---------- 129 (394)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~---------- 129 (394)
...|++... ..+-.+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHh
Confidence 345555422 5677777777777764 36777777888888888888899999988888765 222
Q ss_pred -------HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 130 -------FEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 130 -------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
+-|++++++|...|+.||..++..+++.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 33444444444444444444444444444433
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=0.00021 Score=62.37 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=102.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE--GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVT 152 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 152 (394)
+.+......++..+....+++.+..++-+.... ....-..|.+++++.|.+.|..++++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345566777888888888899999999988875 333345566799999999999999999999999999999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016128 153 SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196 (394)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (394)
.+|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998877777777776666665555
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.94 E-value=0.0018 Score=52.83 Aligned_cols=181 Identities=13% Similarity=0.073 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhh---HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAF---WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
....-.....+...|++++|.+.|+.+... |.++.. .-.++.++.+.+++++|...+++..+..+.-....+...+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 333333455566678888888888887665 333222 2345667778888888888888887764332223333333
Q ss_pred HHHHc--cC---------------C---HHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCCh
Q 016128 259 SACGH--AG---------------H---VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTV 318 (394)
Q Consensus 259 ~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 318 (394)
.+.+. .+ + ..+|...|+.+.+. |=.+.-..+|...+..+...-.
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHH
Confidence 33321 10 1 12344444444442 2222223344333333321000
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 319 SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP---TPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 319 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
..--.+.+-|.+.|.+..|+.-++.+++.-|..+ .++..++.+|.+.|..++|..+...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1112455668888999999999999998776554 456777888999999999988776654
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.94 E-value=0.0064 Score=49.66 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=36.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHh
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLK-PKQEHFGCMVDLLGRSGRLDEARELIRE 312 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (394)
.+...|.+.|.+..|..-++.+.+++.-. ........++.+|.+.|..++|..+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44556677777777777777777654322 2344555666777777777777665543
No 185
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0039 Score=52.99 Aligned_cols=334 Identities=10% Similarity=-0.041 Sum_probs=172.9
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~ 98 (394)
+.+..++..|+..+...++.. +.+..-|..-...+...|++++|.--.+.-.. +.....+...-..+...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 444556666666666666555 33455555555555556666666555444332 111222222333333333333443
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHhhccchhhHHHHHHHHHHH
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM-VPSLKCVTSV-LSACADLSALKLGKETHGHVIR 176 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~ 176 (394)
+.++ +...| ....++..++....... +|...++..+ ..++...|+.++|.++--.+.+
T Consensus 138 ~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 138 EKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred HHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 3333 11111 11223333333332221 2333444433 3445667778877777666666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh-------------HHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF-------------WNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
.+.. +......=..++--.++.+.|...|++.....|+-.. |..=.+-..+.|++..|.+.|.+.+
T Consensus 198 ld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 198 LDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred cccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 5421 2222111122333456677777777776553222111 2222344568899999999999987
Q ss_pred HcC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC
Q 016128 244 QEK---VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE--PT 317 (394)
Q Consensus 244 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 317 (394)
... ..|+...|........+.|+.++|+.--+...+ +.+. ...+..-..++...++|++|.+-|+...+ .+
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 643 455666777777788899999999998877763 2222 12233334466678899999999988775 22
Q ss_pred --hh-hHHHHHHHHHhcCCchHHHHHHHHHHh-hCCCCCchHHHHHHHHh---hcCCcccHHHHHHHhhh
Q 016128 318 --VS-VYHSLLGACWCHLNSDLGEEMAMKLQE-MEPENPTPFVILSNIYA---GLGRWEDVGRIRQMIND 380 (394)
Q Consensus 318 --~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~ 380 (394)
+. ++.....++-+..+.+. ..++.-... ...+...+|..+.-++- ..|.-.+|+..|++.-.
T Consensus 354 ~e~r~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 354 CEIRRTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred cchHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHH
Confidence 22 44444444433322211 111111111 11223345555544433 34555677777776543
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.92 E-value=0.00046 Score=48.99 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=66.4
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCC-CCCHhhHHHHHHHH
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPN--SASFVAVLSACGHAGHVDKALQIFTMMDDDFGL-KPKQEHFGCMVDLL 297 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 297 (394)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....+.- +.+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888888775543 245666777788888888888888877764111 01222233344566
Q ss_pred HhcCcHHHHHHHHHhCCCCChhhHHHHHHH
Q 016128 298 GRSGRLDEARELIRELPEPTVSVYHSLLGA 327 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 327 (394)
...|+.++|...+-....++...|..-+..
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888877655443333334333333
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=1.1e-05 Score=51.38 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=38.6
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
...|++++|++.|+++.+..|.++..+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356777777777777777777777777777777777777777777777766543
No 188
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.91 E-value=0.00061 Score=52.60 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
....+..+...+...|++++|...|++.....++ ...+..+...+.+.|++++|...+++..+... -+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 3456777888899999999999999987654222 35688899999999999999999999988632 256667777
Q ss_pred HHHHHccCCHHHHH
Q 016128 258 LSACGHAGHVDKAL 271 (394)
Q Consensus 258 ~~~~~~~~~~~~a~ 271 (394)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77888777754433
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.0035 Score=56.87 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=15.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGL 104 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 104 (394)
.|.+..|..+.......-.++.|+..|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 445555555555555555555555555443
No 190
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.02 Score=52.59 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=80.8
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGAC 328 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 328 (394)
...-+.+--+.-+...|+-.+|.++-.+++ -||-..|-.=+.+++..+++++-+++-+.... ..-|.-.+.+|
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c 754 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEAC 754 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHH
Confidence 344455555666677788888888777664 37777888788888888888888887777664 34677788888
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHH
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIR 375 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 375 (394)
.+.|+.++|..++.+.-. +.....+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 888888888887655411 125677788888888777654
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.87 E-value=0.0028 Score=47.70 Aligned_cols=124 Identities=11% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC---hhhHH
Q 016128 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT---VSVYH 322 (394)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~ 322 (394)
.|+...-..|..+....|+..+|...|++...- -+.-|..+.-.+.++....+++..|...++.+-+ |. ....-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 344444445555566666666666666665542 2344555555556666666666666666655544 11 11333
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHH
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 373 (394)
.+.+.+...|++..|+..|+.+....| ++..-......+.+.|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 344555556666666666666655554 33444444455555555544433
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.84 E-value=4.5e-05 Score=49.32 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=41.7
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..+.+.+++++|.+.++++...+|.++..+...+.++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456667777777777777777777777777777777777777777777777776544
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.81 E-value=0.0033 Score=57.26 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555555555555555432 34455555555555555555555555555444
No 194
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.80 E-value=0.0011 Score=50.94 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKP--DPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..+++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555556666666666666666665542222 1235666666666677777777766666553
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.79 E-value=0.00015 Score=46.01 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=42.6
Q ss_pred hhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHH
Q 016128 22 ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTM 84 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 84 (394)
.+.|++++|.+.|+.+.+.. |.+..+...+..+|.+.|++++|..+++++.. .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35677888888888877765 55777777788888888888888888887765 4553444333
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.74 E-value=0.023 Score=49.09 Aligned_cols=127 Identities=9% Similarity=0.067 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCC-CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFG-LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA 327 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~ 327 (394)
..|...+....+...++.|.++|-++.+. + ..+++.++++++..++ .|+..-|..+|+--.. ||+. --+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45666777777788889999999999887 5 6788888899888665 5888899999987665 7777 34456667
Q ss_pred HHhcCCchHHHHHHHHHHhhCC--CCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEP--ENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+...++-+.|..+|+..++.-. .-...|..++.--..-|+...+..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7788899999999996665332 2256788888888888888777766666643
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.73 E-value=0.0002 Score=52.96 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=59.8
Q ss_pred HHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHH
Q 016128 296 LLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
-+...|++++|..+|+-+.. |... -|..|..++...+++++|+..|..+..++++||.+....+.++...|+.+.|.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 34566777777777765543 3333 55666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHhhh
Q 016128 373 RIRQMIND 380 (394)
Q Consensus 373 ~~~~~m~~ 380 (394)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77777665
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.0019 Score=51.27 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=86.2
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC-CC---ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK-PD---DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH- 263 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 263 (394)
....+...|++++|...|+.+... |. .+...-.++.++.+.|+++.|...+++..+.-..-....+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 444556677777777777776554 22 2233555666777777777777777776665322111222222222211
Q ss_pred ------------cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 016128 264 ------------AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCH 331 (394)
Q Consensus 264 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (394)
.+...+|...|+.+. .-|=.+.-..+|...+..+.+.=...--.+...|.+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li----------------~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI----------------KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH----------------HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH----------------HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111223333343333 3333333444444433333210000112345667888
Q ss_pred CCchHHHHHHHHHHhhCCCCCc---hHHHHHHHHhhcCCcccHH
Q 016128 332 LNSDLGEEMAMKLQEMEPENPT---PFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~ 372 (394)
|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888888888776553 3566777788888776443
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.027 Score=47.88 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=73.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
.+.-+.-+...|+...|.++-++.. .|+..-|..-+.+++..++|++-.++... +-++.-|..++.+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 4455666677777777776655542 46777788888888888888877665432 123466777888888
Q ss_pred hcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 016128 299 RSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+..-
T Consensus 249 ~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888887743 2556666777777777766543
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.66 E-value=0.0029 Score=49.13 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc----------------chhhHHH
Q 016128 110 KPDPATWNSMISGFSQ-----LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL----------------SALKLGK 168 (394)
Q Consensus 110 ~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 168 (394)
..+-.+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3477888888888764 477888888999999999999999999999987542 2456788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016128 169 ETHGHVIRADLNKDESMATALISMYMKCGQ 198 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (394)
+++++|...|+.||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999866554
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.63 E-value=0.00039 Score=57.19 Aligned_cols=100 Identities=10% Similarity=0.076 Sum_probs=64.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh----hHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS----VYHSLL 325 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~ 325 (394)
.|...+..+.+.|++++|...|+.+.+.+.-.+ .+..+..+...|...|++++|...|+.+.+ |+.. .+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556778888888887776421111 134566677777777888888777777764 4322 444455
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
.++...|+.+.|...|+++.+..|.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 666677777777777777777777654
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.63 E-value=0.00018 Score=46.48 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 295 DLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
..|.+.+++++|.++++++.. |+.. .|.....++...|++++|.+.++++.+..|.++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 567888999999999998887 6666 88888888999999999999999999999877655443
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.034 Score=47.34 Aligned_cols=110 Identities=14% Similarity=0.187 Sum_probs=86.5
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWC 330 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 330 (394)
..+.+..+.-|...|+...|.++-.+. ++ |+...|..-+.+++..++|++..++... +..+.-|..++.+|.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLK 249 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHH
Confidence 345666677778889988888876665 33 7888999999999999999999987665 3344699999999999
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHH
Q 016128 331 HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888762 22566777888888888876643
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.00055 Score=48.58 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=55.4
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC---hh-hHHHHHHHH
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPK--QEHFGCMVDLLGRSGRLDEARELIRELPE--PT---VS-VYHSLLGAC 328 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~-~~~~l~~~~ 328 (394)
+..++-..|+.++|+.+|+..... |.... ...+-.+...+...|++++|..+|++... |+ .. ....+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 445566777778888887777765 55443 23455566677777777777777776654 44 22 333334456
Q ss_pred HhcCCchHHHHHHHHHH
Q 016128 329 WCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~ 345 (394)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66777777777665544
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.56 E-value=0.011 Score=50.73 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcCCC-----ChhhHHHHHHHHhh---cCChhhHHHHHHHHHHcCCCCCHhhHH
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIKPD-----DPAFWNAMISGYGR---NGEYESAVEIFDLMQQEKVKPNSASFV 255 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (394)
.+...++-+|....+++.-.++++.+...|. .+..-....-++.+ .|+.++|++++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3334455567777777777777777766421 11122233444555 778888888887765555667777777
Q ss_pred HHHHHHHc---------cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc-HH---HHHHHH---Hh------C
Q 016128 256 AVLSACGH---------AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR-LD---EARELI---RE------L 313 (394)
Q Consensus 256 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~a~~~~---~~------~ 313 (394)
.+...|-. ....++|+..|.+.-+ +.|+...--.++-.+...|. .+ +..++- .. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77766532 1236677777766543 34444332222222333332 11 222222 11 1
Q ss_pred CC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 314 PE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 314 ~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.+ .+-..+.+++.++.-.|++++|.+.++++.+..|+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 11 223377788899999999999999999999887654
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.042 Score=46.72 Aligned_cols=287 Identities=15% Similarity=0.126 Sum_probs=153.7
Q ss_pred HhHHHHHHHHHHHHhhhcCCchHHHHHHHHHH--HhcCChhHHHHHHHHhccCCChhH--HHHHHHHHHhcCCHHHHHHH
Q 016128 25 LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMY--LKCGCLPCAHNVFQELKGSRNILT--WNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~ 100 (394)
||-..|+++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|...|.... ...|.-..-+.|+.+.|...
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4444555444332211 233444444444332 235788888888888775443322 22233333456777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHhh---ccchhhHHHHHHHHH
Q 016128 101 FEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG-MVPSLK--CVTSVLSACA---DLSALKLGKETHGHV 174 (394)
Q Consensus 101 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~ 174 (394)
-++....-.. -...+...+...+..|+|+.|+++.+.-.... +.++.. .-..|+.+-. -..+...|...-.+.
T Consensus 177 Ae~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 177 AERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 7666554222 35567777777888888888888877655432 333332 1222332211 112445555554444
Q ss_pred HHcCCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCC-CH
Q 016128 175 IRADLNKDES-MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-KVKP-NS 251 (394)
Q Consensus 175 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~ 251 (394)
.+.. |+.. .-..-..++.+.|+..++-.+++.+=+..|.+..+...+ +.+.| +.+..-+++..+. .++| +.
T Consensus 256 ~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~g--dta~dRlkRa~~L~slk~nna 329 (531)
T COG3898 256 NKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSG--DTALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred hhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCC--CcHHHHHHHHHHHHhcCccch
Confidence 4432 2221 112234567777788888888777766555555543322 22333 3444444443321 1233 34
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH-hcCcHHHHHHHHHhCCC-CChhhHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG-RSGRLDEARELIRELPE-PTVSVYH 322 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-~~~~~~~ 322 (394)
.+...+..+-...|++..|..--+... ...|....|..|.+.-. ..||-.++...+.+... |.+..|.
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 555566667777777777766655554 34666667766666544 34777777777776665 4444443
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.54 E-value=0.021 Score=45.44 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=29.0
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHH
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 306 (394)
+...|.+.|.+..|..-++.+.+++.-.+. ......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 556677777777777777777765322221 23445566677777776644
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.53 E-value=0.00035 Score=52.32 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=77.0
Q ss_pred HhhHHHHHH---HHHccCCHHHHHHHHHHchhcCCCC--CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHH
Q 016128 251 SASFVAVLS---ACGHAGHVDKALQIFTMMDDDFGLK--PKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325 (394)
Q Consensus 251 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 325 (394)
...|..++. .....++.+.+...++.+...+.-+ ++... ..-.......+++.. ..+...++
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~---~~~~~~l~ 69 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY---LDALERLA 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344444433 3345677888888887777644211 11111 011111111222110 12556677
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh-----ccccccCCC
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND-----RQLTKLPGI 389 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 389 (394)
..+...|++++|++.++.+...+|.+...+..++.+|...|+..+|.++++++.. .|+.|++.+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 7888999999999999999999999999999999999999999999999988743 588887653
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.52 E-value=0.046 Score=46.49 Aligned_cols=288 Identities=15% Similarity=0.114 Sum_probs=181.8
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHH
Q 016128 80 TWNTMIAGMM--LNGRSEKAMELFEGLAHEGFKPDPATWNSMIS--GFSQLGMRFEAFKLFEKMQSTGMVPSLKC--VTS 153 (394)
Q Consensus 80 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ 153 (394)
-|..|-.+++ -.|+-..|.++-.+-.+. +..|......++. +-.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3555555554 356777777776655432 2234444444443 334569999999999999752 22221 222
Q ss_pred HHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCChhh--HHHHHHHHh-
Q 016128 154 VLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK---PDDPAF--WNAMISGYG- 227 (394)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~--~~~l~~~~~- 227 (394)
|.-...+.|+.+.|..+-+..-..-.. -.......+...+..|+++.|+++++.-... .++..- -..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333335678888888887777655422 3456677888899999999999999864432 222211 122222211
Q ss_pred --hcCChhhHHHHHHHHHHcCCCCCHhh-HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHH
Q 016128 228 --RNGEYESAVEIFDLMQQEKVKPNSAS-FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLD 304 (394)
Q Consensus 228 --~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (394)
-.-+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+. .|.+.+....+ +.+.|+..
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcH
Confidence 12345555555555444 4555432 233456788999999999999999854 66666655443 44566532
Q ss_pred HH--H--HHHHhCCCCChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc-CCcccHHHHHHHh
Q 016128 305 EA--R--ELIRELPEPTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL-GRWEDVGRIRQMI 378 (394)
Q Consensus 305 ~a--~--~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m 378 (394)
.. . +-++.|. |+.. +.-.+..+....|++..|..-.+.+....| ....|..|.+.-... ||-.++...+-+.
T Consensus 312 ~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 22 1 2234444 4444 788888888899999999888888888888 447888888876654 9999999998887
Q ss_pred hhc
Q 016128 379 NDR 381 (394)
Q Consensus 379 ~~~ 381 (394)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 764
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0054 Score=50.15 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=72.4
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC---cHHHHHHHHHhCCC--CChh-hHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG---RLDEARELIRELPE--PTVS-VYH 322 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~--~~~~-~~~ 322 (394)
-|...|..|...|...|+++.|..-|....+- ..+++..+..+..++.... +..++..+|+++.. |++. +..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 37778888888888888888888888877652 3345556666666554432 34577788888776 5555 666
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.|...+...|++.+|...|+.+.+..|++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 77777888888888888888888877765
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.01 Score=47.37 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHH-----
Q 016128 114 ATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA----- 188 (394)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 188 (394)
...+.++.++.-.|.+.-.+..+.+.++...+.++.....+.+.-.+.||.+.|...++...+..-..+..+.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455677777888888888888888888876666777888888888889999999988887766544444433333
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (394)
....|.-.+++..|...+.++... +.++..-|.-.-+..-.|+..+|++.++.|.+. .|...+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 334456667888888888887665 566666666666666778999999999999886 344433
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.0006 Score=57.69 Aligned_cols=262 Identities=11% Similarity=0.042 Sum_probs=121.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPDP----ATWNSMISGFSQLGMRFEAFKLFEKM--QST--GMV-PSLKCVTSVLS 156 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m--~~~--~~~-~~~~~~~~l~~ 156 (394)
.-+++.|+...-..+|+...+.|-. |. ..|..|..+|.-.+++++|+++...= ... |-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478889999999999998887654 43 34566667777778888888765331 111 100 01122334444
Q ss_pred HhhccchhhHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHHcCCc--------------------hHHHHHHHH---
Q 016128 157 ACADLSALKLGKETHGH----VIRADLN-KDESMATALISMYMKCGQP--------------------SWARRFFDQ--- 208 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~--- 208 (394)
.+--.|.+++|.-...+ ..+.|-. .....+..+...|...|+- +.|.++|.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44555666666543322 2222211 1233344466666555431 122222221
Q ss_pred hhcC----CCChhhHHHHHHHHhhcCChhhHHHHHHHH----HHcCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 209 FEIK----PDDPAFWNAMISGYGRNGEYESAVEIFDLM----QQEKVK-PNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 209 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
+... ......|..|.+.|--.|+++.|+..-+.- .+.|-+ .-...+..+..++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 0000 011122444444444455555555443321 122211 1123445555555555555555555554321
Q ss_pred c---CC-CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--------CCh-hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 280 D---FG-LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--------PTV-SVYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 280 ~---~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
- .| -.....+..+|...|.-..++++|+.++++-.. ... ..+.+|..++...|..++|+.+.+..++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0 01 111223334445555555555555555443321 111 1444555555555555555555555444
Q ss_pred hC
Q 016128 347 ME 348 (394)
Q Consensus 347 ~~ 348 (394)
..
T Consensus 344 ~s 345 (639)
T KOG1130|consen 344 SS 345 (639)
T ss_pred HH
Confidence 44
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.019 Score=45.91 Aligned_cols=229 Identities=12% Similarity=0.140 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCC----------------hhHHH-HHHHH--HHhcCCHHHHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRN----------------ILTWN-TMIAG--MMLNGRSEKAMELFEGLA 105 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----------------~~~~~-~ll~~--~~~~~~~~~a~~~~~~m~ 105 (394)
..|+.-+.++.+....++|..-++...+ .|+ ...|. .++.+ .-..|...+.+.-+..+.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3566777888888888888776665543 121 11222 12222 334566666655555444
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHH
Q 016128 106 HEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESM 185 (394)
Q Consensus 106 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 185 (394)
.. -...+.-+......+..++++++-.. ...+.++.++.-.+.+.-....+.++++...+.++..
T Consensus 150 ~~--------V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 150 TV--------VSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HH--------HHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 31 11233333333344666777765432 3456777888888899999999999999887888999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHH-----HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWN-----AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
...|++.-.+.|+.+.|...|++..+. ..+...++ .....|.-.+++..|...+.+....+.. |+...|.-.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKA 293 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKA 293 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHH
Confidence 999999999999999999999976544 12222223 3334566778899999999888776422 444444433
Q ss_pred HHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHH
Q 016128 259 SACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294 (394)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (394)
-+..-.|+...|.+.++.+... .|.+.+-++++
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~---~P~~~l~es~~ 326 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQ---DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCccchhhhHH
Confidence 3444568999999999999854 66666555443
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.47 E-value=0.0022 Score=54.43 Aligned_cols=269 Identities=10% Similarity=0.015 Sum_probs=164.6
Q ss_pred ChHHHHHHHHH--hhhhHhHHHHHHHHHHHHhhhcCCc----hHHHHHHHHHHHhcCChhHHHHHHHH-------hcc-C
Q 016128 10 NSVTFISVISA--CASLLYLQFGRQVHGLTLKIEKQSD----TMIGTALVDMYLKCGCLPCAHNVFQE-------LKG-S 75 (394)
Q Consensus 10 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~-~ 75 (394)
+...|...+.+ +++.|+......+|+..++.| .-| ..+|..|..+|.-.+++++|++.-.. +.. .
T Consensus 14 ~~SCleLalEGERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred hhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 34455554443 889999999999999999988 333 44677778888888999999887532 111 1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHH----HHHhcCCC-CCHHHHHHHHHHHHccCC--------------------HH
Q 016128 76 RNILTWNTMIAGMMLNGRSEKAMELFE----GLAHEGFK-PDPATWNSMISGFSQLGM--------------------RF 130 (394)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~a~~~~~----~m~~~g~~-p~~~~~~~l~~~~~~~~~--------------------~~ 130 (394)
....+-..|...+--.|.+++|+-.-. -..+.|-+ ....++..+...|...|+ ++
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 122333344455555677777654322 22222211 133455556666654432 23
Q ss_pred HHHHHHHHHHh----CCC-CCCHHHHHHHHHHhhccchhhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHHcCCch
Q 016128 131 EAFKLFEKMQS----TGM-VPSLKCVTSVLSACADLSALKLGKETHGHVI----RADLN-KDESMATALISMYMKCGQPS 200 (394)
Q Consensus 131 ~a~~~~~~m~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~ 200 (394)
.|.++|.+-.+ .|- -.--..|..|.+.|.-.|+++.|....+.-. +.|-. .....+..+.+++.-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 45555544221 110 0112356667777777889998887655432 22211 12355677888899999999
Q ss_pred HHHHHHHHh-------hcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH----cC-CCCCHhhHHHHHHHHHccCCHH
Q 016128 201 WARRFFDQF-------EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ----EK-VKPNSASFVAVLSACGHAGHVD 268 (394)
Q Consensus 201 ~a~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~ 268 (394)
.|.+.|+.. ........+.-+|.+.|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 999888753 22223344466778888888888899888775432 11 1224567888899999999999
Q ss_pred HHHHHHHHchh
Q 016128 269 KALQIFTMMDD 279 (394)
Q Consensus 269 ~a~~~~~~~~~ 279 (394)
+|..+.+...+
T Consensus 333 kAl~fae~hl~ 343 (639)
T KOG1130|consen 333 KALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHH
Confidence 98887765543
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.47 E-value=0.0015 Score=53.70 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCC-CCHhhHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPN--SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK-PKQEHFGCMVD 295 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~ 295 (394)
|...+..+.+.|++++|+..|+.+.+...... ...+..+...|...|++++|...|+.+.+.+... .....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444445666666666666655421110 1344455555666666666666666665432111 12233334445
Q ss_pred HHHhcCcHHHHHHHHHhCCC
Q 016128 296 LLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~ 315 (394)
.+...|+.++|..+|+++.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55556666666666655543
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.46 E-value=0.00038 Score=60.27 Aligned_cols=98 Identities=11% Similarity=-0.015 Sum_probs=68.5
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 285 PKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
.+...++.+..+|.+.|++++|+..|++..+ |+.. +|..+..+|...|+.++|++.++++++..+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 4566788888899999999999999988776 6654 4888889999999999999999998887421 22211
Q ss_pred HH--HHhhcCCcccHHHHHHHhhhccccc
Q 016128 359 SN--IYAGLGRWEDVGRIRQMINDRQLTK 385 (394)
Q Consensus 359 ~~--~~~~~g~~~~a~~~~~~m~~~~~~~ 385 (394)
.. .+....+..+..++++.+...|...
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 11 1112234446777777777766543
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0079 Score=44.96 Aligned_cols=71 Identities=18% Similarity=0.347 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS-----TGMVPSLKCV 151 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 151 (394)
....++..+...|++++|.++.+.+....+. |...|..+|.+|...|+...|++.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4555667777888888888888888877433 777888888888888888888888887643 3777776654
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.37 E-value=9.6e-05 Score=39.15 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=30.1
Q ss_pred HHHHHhhCCCCCchHHHHHHHHhhcCCcccHH
Q 016128 341 AMKLQEMEPENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
|+++++.+|+++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.35 E-value=0.00037 Score=39.62 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
++..+..+|...|++++|++.|+++++..|+++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56778899999999999999999999999999988887764
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.31 E-value=0.00043 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=9.2
Q ss_pred HHHHHHHHhhcCCcccHHHHHHH
Q 016128 355 FVILSNIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 355 ~~~l~~~~~~~g~~~~a~~~~~~ 377 (394)
+..++.++...|++++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333344444444444444433
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.26 E-value=0.00017 Score=47.22 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=51.3
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
..+++.+...|...|++++|+..|++..+ |+.. ++..+..++...|++++|++.++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35788899999999999999999988764 3333 8899999999999999999999998764
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.032 Score=41.60 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=65.2
Q ss_pred HHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVD 268 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (394)
..-+...|++++|..+|.-+... +.++..|..|..++...+++++|+..|......+. -|+..+-....++...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33445678888888888876554 56777788888888888888888888887665543 25555556677788888888
Q ss_pred HHHHHHHHchh
Q 016128 269 KALQIFTMMDD 279 (394)
Q Consensus 269 ~a~~~~~~~~~ 279 (394)
.|...|.....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887775
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0014 Score=55.67 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=97.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCC----CCC---------CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFG----LKP---------KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS- 319 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~- 319 (394)
.-...+.+.|++..|..-|+....-.. .++ -..++..|.-++.+.+++.+|++..+...+ |+..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 345788899999999999988654211 111 133566778889999999999999888876 5444
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCccc-HHHHHHHhhhc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWED-VGRIRQMINDR 381 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 381 (394)
..-.-.+++...|+++.|+..|+++++..|.|..+-..++.+-.+...+.+ ..++|..|-..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777778999999999999999999999999998888888887776655554 47788888653
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.13 E-value=0.0086 Score=43.04 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=44.9
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 246 KVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
...|+..+..+++.+|+..+++..|.++++.+.+.|+++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3678889999999999999999999999999999989888888888888743
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.055 Score=42.94 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC------CChh-hHHHHHHHHHhcCCchHHHHHH
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE------PTVS-VYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~-~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
|-..|-.+.-..|+..|...++.-.. ++.. +...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33444445555667777777766322 3333 666666665 445555555443
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.11 E-value=0.034 Score=39.47 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=88.6
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (394)
+.-.|..++..++..+..... +..-++-+|.-....-+-+-..+.++.+-+.+.+.+- .-...++..|.+.|...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~s- 86 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLS- 86 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchH-
Confidence 345677888888888877652 5555666666666666666677777777554333221 12234455555444322
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 306 ARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 306 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
...+..+..+...|+-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++.++++++.+.|++
T Consensus 87 -------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 -------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 234555677888999999999999988777778999999999999999999999999999999875
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.06 E-value=0.041 Score=49.87 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=113.5
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCH-----hhHHHHHHHHHc----cCCHHHHHHHHHHchhcCCCCCC
Q 016128 217 AFWNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNS-----ASFVAVLSACGH----AGHVDKALQIFTMMDDDFGLKPK 286 (394)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 286 (394)
.....++....-.||-+.+++.+.+..+.+ +.-.. -.|..++..++. ....+.|.+++..+.++ -|+
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~ 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPN 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCC
Confidence 345677777778899999999888876643 22111 123334443332 45788899999999864 455
Q ss_pred HhhHH-HHHHHHHhcCcHHHHHHHHHhCCC-----CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 287 QEHFG-CMVDLLGRSGRLDEARELIRELPE-----PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 287 ~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
...|. .-.+.+...|+.++|.+.|++... +... .+--+.-.+.-..++++|...+.++.+...-+...|..+
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 54443 345667788999999999997664 2222 555566677888999999999999999887777777666
Q ss_pred HHH-HhhcCCc-------ccHHHHHHHhhhc
Q 016128 359 SNI-YAGLGRW-------EDVGRIRQMINDR 381 (394)
Q Consensus 359 ~~~-~~~~g~~-------~~a~~~~~~m~~~ 381 (394)
.-+ +...|+. ++|.+++.++...
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 544 5577888 8888888887664
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0053 Score=52.22 Aligned_cols=127 Identities=9% Similarity=-0.013 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHc-----CCCCC---------HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQE-----KVKPN---------SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP 285 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (394)
..-.+.|.+.|++..|...|++.... +..+. ..++..+..++.+.+++..|+..-...+. --++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCC
Confidence 34456788889999999998887553 11111 13466677778888999999988888875 2345
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc-hHHHHHHHHHHhhC
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS-DLGEEMAMKLQEME 348 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~ 348 (394)
++.....=..++...|+++.|+..|+++.+ |+.. +-+.++..-.+.... +...++|..|...-
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 566666667788889999999999998887 7776 555555444443333 33355666665533
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.02 E-value=0.13 Score=41.50 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHcCCchHHHHHHHHhhcC-CCC---hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK-PDD---PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
.-.+.|++++|.+.|+.+... |.+ ..+--.++-++-+.++++.|+..+++..+.-..-....|...+.++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 344567777777777776654 222 2234445555666777777777777766543322223343344433
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.29 Score=45.19 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 73 (394)
.|.+..|..+.......-.++.|+..|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 5666777777666666666666666665544
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0041 Score=50.16 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=52.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CChh-hHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGL-KPKQEHFGCMVDLLGRSGRLDEARELIRELPE-----PTVS-VYHSLL 325 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~~l~ 325 (394)
.|+.-+..+ +.|++..|...|....+.|.- .-.+..+--|..++...|++++|..+|..+.+ |... .+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444443 345566666666666653211 11123344456666666666666666655544 2222 444455
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
.+..+.|+.++|...|+++.+..|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5555666666666666666666665543
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.90 E-value=0.02 Score=41.63 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--CCh---h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 295 DLLGRSGRLDEARELIRELPE--PTV---S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--~~~---~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
....+.|++++|.+.|+.+.. |-. . .--.++.++.+.+++++|...+++.+++.|.++.+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 334455666666666666654 211 1 45556667777777777777777777777666544
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.88 E-value=0.027 Score=40.52 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 016128 109 FKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST-GMVPSLKCVTSVLS 156 (394)
Q Consensus 109 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~ 156 (394)
..|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445555555555555555555555555554432 34444444444443
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.87 E-value=0.071 Score=48.35 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHE-GFKPD-----PATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCVT 152 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 152 (394)
.++....=.||-+..++.+.+..+. |+.-. .-+|+..+..+.. ....+.|.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444455555555555554432 22211 1123333332222 23445566666665553 34444443
Q ss_pred HH-HHHhhccchhhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC-hhhHHHHH-HHH
Q 016128 153 SV-LSACADLSALKLGKETHGHVIRAD---LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDD-PAFWNAMI-SGY 226 (394)
Q Consensus 153 ~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~-~~~ 226 (394)
.. .+.+...|++++|.+.++...... .......+--+.-.+.-.+++++|...|..+.+...- ..+|.-+. .++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 22 334455566666666666443211 0112222333455566666666666666666553222 22222222 223
Q ss_pred hhcCCh-------hhHHHHHHHH
Q 016128 227 GRNGEY-------ESAVEIFDLM 242 (394)
Q Consensus 227 ~~~~~~-------~~a~~~~~~~ 242 (394)
...|+. ++|.++|.+.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHH
Confidence 345555 6666666654
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.84 E-value=0.0089 Score=42.17 Aligned_cols=86 Identities=21% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC-CCCCc---hHHHHHHHHhhcCCcc
Q 016128 297 LGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME-PENPT---PFVILSNIYAGLGRWE 369 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~~ 369 (394)
+...|+.+.|++.|.+... |... .||.-.+++.-.|+.++|++-+++++++. |.... .|..-+..|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 4445555555555555544 3333 55555555555555555555555555543 22211 2333344455555555
Q ss_pred cHHHHHHHhhhcc
Q 016128 370 DVGRIRQMINDRQ 382 (394)
Q Consensus 370 ~a~~~~~~m~~~~ 382 (394)
.|..-|+.....|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555544433
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.82 E-value=0.0076 Score=52.53 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=66.8
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH----hhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ----EHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSL 324 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 324 (394)
.+...++.+..+|...|++++|+..|+...+ +.|+. ..|..+..+|...|+.++|+..+++..+-....|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHH
Confidence 3567889999999999999999999999884 35664 3588899999999999999999999876322233211
Q ss_pred HH--HHHhcCCchHHHHHHHHHHhhC
Q 016128 325 LG--ACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 325 ~~--~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.. .+....+.++..++++.+.+-+
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhC
Confidence 11 0111223345555555555554
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.79 E-value=0.21 Score=40.42 Aligned_cols=223 Identities=17% Similarity=0.089 Sum_probs=134.7
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhccchhhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCchHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMV-PSLKCVTSVLSACADLSALKLGKETHGHVIRA-DLNKDESMATALISMYMKCGQPSWAR 203 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (394)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555666666665554222 12456666677777777777777777776652 22344555666666677777777777
Q ss_pred HHHHHhhcCCCCh-hhHHHHHH-HHhhcCChhhHHHHHHHHHHcCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 204 RFFDQFEIKPDDP-AFWNAMIS-GYGRNGEYESAVEIFDLMQQEKV--KPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
..+.......++. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777766542222 22233333 67777888888888887754221 11233344444445666777777777777765
Q ss_pred cCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC-hhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 280 DFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PT-VSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 280 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
. .+. ....+..+...+...++++.|...+..... |+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2 222 355666667777777777777777777766 33 124444444444556677777777777777665
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.76 E-value=0.33 Score=42.41 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=37.2
Q ss_pred ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 215 DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP---NSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
...+|..++..+.+.|+++.|...+.++.+.+... ++.....-+...-..|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666777777777777776666543111 223333344455556666777766666654
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.75 E-value=0.2 Score=44.38 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=68.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChh--hHHHHHHHHH
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVS--VYHSLLGACW 329 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~--~~~~l~~~~~ 329 (394)
..+..++.+.|+.++|++.++++.+.+.......+...|+.++...+.+.++..++.+-.+ |... +|+..+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4566777889999999999999987533323455778899999999999999999888764 4555 6776554433
Q ss_pred hcCCc---------------hHHHHHHHHHHhhCC
Q 016128 330 CHLNS---------------DLGEEMAMKLQEMEP 349 (394)
Q Consensus 330 ~~g~~---------------~~a~~~~~~~~~~~~ 349 (394)
..++. ..|.+.+.++.+.+|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 33331 245677888887665
No 240
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.66 E-value=0.4 Score=41.95 Aligned_cols=333 Identities=13% Similarity=0.069 Sum_probs=157.3
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcC----CchHHHHHHHHHHHhcCChh--------HHHHHH-------HHhcc-
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQ----SDTMIGTALVDMYLKCGCLP--------CAHNVF-------QELKG- 74 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~--------~A~~~~-------~~~~~- 74 (394)
+..+..+...|++.+++.+++++...-.+ -+..+|+.++-+++++--++ -+...+ .++..
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~ 211 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAF 211 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 56667778889999999888887765444 78888888777776542111 111111 11110
Q ss_pred --------CCChhHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 016128 75 --------SRNILTWNTMIAGMMLN--GRSEKAMELFEGLAHEGFKPDPA-TWNSMISGFSQLGMRFEAFKLFEKMQSTG 143 (394)
Q Consensus 75 --------~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 143 (394)
-|.......++....-. .+..--.++++.-...-+.|+.. ....+...+.+ +.+++..+.+.+....
T Consensus 212 d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~ 289 (549)
T PF07079_consen 212 DQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK 289 (549)
T ss_pred hhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh
Confidence 01111111122111111 11111223333333333444422 22333333333 5566666555554332
Q ss_pred CCC----CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHH----cCCchHHHHHHHH
Q 016128 144 MVP----SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL-------ISMYMK----CGQPSWARRFFDQ 208 (394)
Q Consensus 144 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~----~g~~~~a~~~~~~ 208 (394)
+.+ =..+|..++....+.++...|.+.+.-+.-.. |+..+-..+ -+..+. .-+...=..+++.
T Consensus 290 i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 290 IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 211 23467777777788888888877777665443 222211111 111110 0112222334444
Q ss_pred hhcCCCChhh-HHHHH---HHHhhcCC-hhhHHHHHHHHHHcCCCCCHhhHHH----HHHHHHc---cCCHHHHHHHHHH
Q 016128 209 FEIKPDDPAF-WNAMI---SGYGRNGE-YESAVEIFDLMQQEKVKPNSASFVA----VLSACGH---AGHVDKALQIFTM 276 (394)
Q Consensus 209 ~~~~~~~~~~-~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~---~~~~~~a~~~~~~ 276 (394)
+.....|..- -..|+ .-+-+.|. -++|+++++...+-. .-|...-+. +=.+|.+ ...+.+-..+-+-
T Consensus 368 ~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4332111111 11122 22344454 677888888776642 123322222 2223332 2334444444333
Q ss_pred chhcCCCCCC----HhhHHHHHH--HHHhcCcHHHHHHHHHhC--CCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 277 MDDDFGLKPK----QEHFGCMVD--LLGRSGRLDEARELIREL--PEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 277 ~~~~~~~~~~----~~~~~~l~~--~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
+.+. |++|- ...-|.|.+ .+...|++.++.-.-.=+ ..|...+|..+.-++....++++|..++..+
T Consensus 447 i~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L---- 521 (549)
T PF07079_consen 447 ITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL---- 521 (549)
T ss_pred HHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----
Confidence 3333 66653 233444443 345677877775432222 2365558888877777777888887776653
Q ss_pred CCCCchHHH
Q 016128 349 PENPTPFVI 357 (394)
Q Consensus 349 ~~~~~~~~~ 357 (394)
|+|..++..
T Consensus 522 P~n~~~~ds 530 (549)
T PF07079_consen 522 PPNERMRDS 530 (549)
T ss_pred CCchhhHHH
Confidence 445555443
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.65 E-value=0.37 Score=44.11 Aligned_cols=217 Identities=11% Similarity=0.083 Sum_probs=122.9
Q ss_pred HHHHHHhhhhHhHH--HHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccC-CChhHHHH-----HHH
Q 016128 15 ISVISACASLLYLQ--FGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGS-RNILTWNT-----MIA 86 (394)
Q Consensus 15 ~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~-----ll~ 86 (394)
+..-.+|.+-++.. +..--++++++.|-.|+... +...++-.|++.+|-++|.+-..+ +-...|+- +..
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQ 678 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHH
Confidence 34444555444432 33334556666775576643 445566789999999999886531 11222221 123
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH------HHhCCCC---CCHHHHHHHHHH
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEK------MQSTGMV---PSLKCVTSVLSA 157 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~~---~~~~~~~~l~~~ 157 (394)
-+...|..++-..+..+-.+. .-|..--.+....+...|+.++|..+.-+ +.+.+-+ .+..+...+..-
T Consensus 679 E~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATY 756 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 344455554444443332211 00111112345566777888877765422 1222212 233445555555
Q ss_pred hhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh-----------HHHHHHHH
Q 016128 158 CADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF-----------WNAMISGY 226 (394)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~l~~~~ 226 (394)
+.+...+..|-++|..+-.. ..++......++|.+|..+-++.++-.+++.. |...-.+|
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 56677778888888876432 34677788889999999999888775444322 33344567
Q ss_pred hhcCChhhHHHHHHHHHHc
Q 016128 227 GRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~ 245 (394)
.+.|+..+|..+++++...
T Consensus 828 hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhcchHHHHHHHHHhhhh
Confidence 7888888888888887554
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.65 E-value=0.025 Score=45.83 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHHHHHhcc-CCChhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC------------
Q 016128 66 HNVFQELKG-SRNILTWNTMIAGMML-----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG------------ 127 (394)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~------------ 127 (394)
...|..... +.|-.+|-..+..+.. .+.++-.-..++.|.+-|+.-|..+|+.|+..+-+-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 344444442 4566777777766653 3567777778888999999999999999998775432
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 128 ----MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 128 ----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+-+-+++++++|...|+.||..+-..+++++.+.+.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224467788888888888888888888888877664
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.24 Score=40.72 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=18.8
Q ss_pred cCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 196 CGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 196 ~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
.|++.+|...|...... +.+...--.++.+|...|+.+.|..++..+
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34444444444433222 223333334444444444444444444443
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.62 E-value=0.12 Score=46.21 Aligned_cols=158 Identities=13% Similarity=0.168 Sum_probs=88.8
Q ss_pred HHHHhcCCHHHHHHHHH--HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 86 AGMMLNGRSEKAMELFE--GLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
....-.++++++.++.+ ++.. .+ +..-.+.+++.+.+.|..+.|+++-..- . .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCC
Confidence 34445677777666554 1111 11 2444667777777777777777654321 1 11223345567
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 164 LKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
++.|.++.++ ..+...|..|.....+.|+++-|+..|.+... |..|+-.|...|+.+...++.+...
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 7766665433 23566777888888888888888888877766 6777777777787777777776666
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
..|- ++....++...|+.++..+++...
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5542 344445555567777777766554
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.037 Score=44.84 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVK--PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVD 295 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 295 (394)
|+.-+.. .+.|++..|...|....+.... -....+-.|..++...|+++.|..+|..+.+.++-.|. +..+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444433 3445566666666666654311 11223444666666666666666666666654433332 355556666
Q ss_pred HHHhcCcHHHHHHHHHhCCC
Q 016128 296 LLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~ 315 (394)
...+.|+.++|..+|+++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66666666666666666655
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.54 E-value=0.095 Score=38.19 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHhhCCCCC
Q 016128 334 SDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~ 352 (394)
...|...|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777777777777654
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.54 E-value=0.077 Score=44.73 Aligned_cols=224 Identities=13% Similarity=0.022 Sum_probs=114.7
Q ss_pred ccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhhccchhhHHHHHHHH----HHHcC-CCCCHHHHHHHHHHHHHcC
Q 016128 125 QLGMRFEAFKLFEKMQST--GMVPSLKCVTSVLSACADLSALKLGKETHGH----VIRAD-LNKDESMATALISMYMKCG 197 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~g 197 (394)
...+.++|+..+.+-... ...-.-.++..+..+.++.|.++++...--. ..+.. -..--..|..+..++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444322 1111223555666666677766665533221 11110 0011233444555555555
Q ss_pred CchHHHHHHHHhhcCCC------ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC-----CCCCHhhHHHHHHHHHccCC
Q 016128 198 QPSWARRFFDQFEIKPD------DPAFWNAMISGYGRNGEYESAVEIFDLMQQEK-----VKPNSASFVAVLSACGHAGH 266 (394)
Q Consensus 198 ~~~~a~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 266 (394)
++.+++.+-..-...|. .....-++..++...+.++++++.|+...+.- ....-..+..|...|....+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 55555555444322211 11223446667777778888888888765421 11123567777778888888
Q ss_pred HHHHHHHHHHchh---cCCCCCCHhhHH-----HHHHHHHhcCcHHHHHHHHHhCCC-----CChh----hHHHHHHHHH
Q 016128 267 VDKALQIFTMMDD---DFGLKPKQEHFG-----CMVDLLGRSGRLDEARELIRELPE-----PTVS----VYHSLLGACW 329 (394)
Q Consensus 267 ~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~ 329 (394)
+++|.-+..+..+ .+++..-..-|. .+.-++...|+.-.|.+.-++..+ -|.. ....+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 8887766554432 223222222222 233355566666666666555543 2222 3445556677
Q ss_pred hcCCchHHHHHHHHHHhhC
Q 016128 330 CHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~ 348 (394)
..|+.+.|..-|+.+....
T Consensus 258 ~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hcccHhHHHHHHHHHHHHH
Confidence 7777777777776655443
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.52 E-value=0.4 Score=40.28 Aligned_cols=101 Identities=7% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHHHHHhhccchhh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC-ChhhHHHHHHH
Q 016128 150 CVTSVLSACADLSALK---LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD-DPAFWNAMISG 225 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 225 (394)
++..++.++...+..+ +|..+++.+.+... -.+.++..-+..+.+.++.+.+.+.+.+|..... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4455555555554433 34444444433321 1234444445555556666666666666655422 23334444444
Q ss_pred Hhh--cCChhhHHHHHHHHHHcCCCCCH
Q 016128 226 YGR--NGEYESAVEIFDLMQQEKVKPNS 251 (394)
Q Consensus 226 ~~~--~~~~~~a~~~~~~~~~~~~~~~~ 251 (394)
+.. ......+...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 311 12233455555554444344433
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=96.50 E-value=0.21 Score=43.99 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=101.1
Q ss_pred hhH--HHHHHHHhhc-----CChhhHHHHHHHHHH-cCCCCC-HhhHHHHHHHHHc---------cCCHHHHHHHHHHch
Q 016128 217 AFW--NAMISGYGRN-----GEYESAVEIFDLMQQ-EKVKPN-SASFVAVLSACGH---------AGHVDKALQIFTMMD 278 (394)
Q Consensus 217 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 278 (394)
..| ..++.+.... ...+.|..+|.+... +...|+ ...|..+..++.. ..+..+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 6666655442 235677888888872 223444 3444444433321 223445666666665
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch-
Q 016128 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP- 354 (394)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 354 (394)
+ --+.|+.....+..+..-.|+++.|..+|++... |+.. +|......+.-.|+.++|.+.++++.+++|....+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 2345677777777777888889999999998876 7777 77777777777899999999999999999865543
Q ss_pred -HHHHHHHHhhcCCcccHHHHHH
Q 016128 355 -FVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 355 -~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
....+..|... ..++|++++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 33334345553 5666776653
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.47 E-value=0.19 Score=35.86 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=21.1
Q ss_pred cCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016128 59 CGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGL 104 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 104 (394)
.|.+++..++..+...+.+..-||-+|--....-+-+-..+.++..
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsI 60 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSI 60 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHH
Confidence 4555666666655554444444555554444444444444444443
No 251
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.43 E-value=0.38 Score=40.60 Aligned_cols=125 Identities=11% Similarity=0.127 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh--c----CChhHHHHHHHHhcc------CCChhHHHHHHHHHHhcCC-
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK--C----GCLPCAHNVFQELKG------SRNILTWNTMIAGMMLNGR- 93 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~------~~~~~~~~~ll~~~~~~~~- 93 (394)
++....+++.+.+.|+..+..+|-+..-.... . ....+|.++++.|+. .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55566666667766666666555443333222 1 134455566666654 1233344444333 2222
Q ss_pred ---HHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHHHHHH
Q 016128 94 ---SEKAMELFEGLAHEGFKPDPA--TWNSMISGFSQLGM--RFEAFKLFEKMQSTGMVPSLKCVTS 153 (394)
Q Consensus 94 ---~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ 153 (394)
.+.++..|+.+.+.|+..+.. ....++........ ..++..+++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 234445555555555444322 22222221111111 2345555555555555555444443
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.44 Score=39.29 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=67.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
....|++.+|..+|....... +-+...-..+..++...|+.+.|..++..+-...-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 334455555555555544332 1123334444555555555555555555442221111111122234444455555555
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CCCHhhHHHHHHHHHccC
Q 016128 203 RRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-KPNSASFVAVLSACGHAG 265 (394)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 265 (394)
..+-.++...|.|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555555555666666666666666666666666555544321 113333444444444444
No 253
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.37 E-value=0.17 Score=39.54 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=82.5
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
|.-+..||-|.--+...|+++.|.+.|+...+.+..-+-...|.-|.. .--|+++.|.+-+...-..-.-.|-...|-.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 555666777777777777777777777777765433332333332322 2346777776655554432122222222322
Q ss_pred HHHHHHhcCcHHHHH-HHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC-------CchHHHHHHHHhh
Q 016128 293 MVDLLGRSGRLDEAR-ELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN-------PTPFVILSNIYAG 364 (394)
Q Consensus 293 l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~ 364 (394)
++. ..-++.+|. .+.++....+..-|...+..+.- |+.. ...+++++.+...++ ..+|..|+.-+..
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 221 223444554 33444444444444433333221 1111 122333333322222 2467777777777
Q ss_pred cCCcccHHHHHHHhhhcc
Q 016128 365 LGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~ 382 (394)
.|+.++|..+|+..+..+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 888888888777766543
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.55 Score=44.33 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI----SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
...-+..+.+...++-|+.+-+. .+. +..+...++ ..+.+.|++++|...|-+.... +.|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 34456666777777777666543 222 333333333 3455778888888877666543 3332 3455
Q ss_pred HhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHH
Q 016128 157 ACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAV 236 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (394)
-+.....+..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..... .-..-....+..+.+.+-.+.|.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g-~~~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKG-EWFFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCc-ceeeeHHHHHHHHHHhChHHHHH
Confidence 566667777777788888888765 4445567888888888888877777665521 11111345556666666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
.+-.+... +......++ -..+++++|.+++..+
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 55544332 333333333 3457788888777665
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.34 E-value=0.27 Score=36.33 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
...++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666677777777777766653 46666677777776543 3333344332 1122223345555555
Q ss_pred cchhhHHHHHHHHH
Q 016128 161 LSALKLGKETHGHV 174 (394)
Q Consensus 161 ~~~~~~a~~~~~~~ 174 (394)
.+-++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
No 256
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=96.32 E-value=1 Score=42.68 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=47.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHHHHHHh-cCC-----------chHHHHHHHHHHh-------hCCC
Q 016128 292 CMVDLLGRSGRLDEARELIRELPEPTVS--VYHSLLGACWC-HLN-----------SDLGEEMAMKLQE-------MEPE 350 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~-~g~-----------~~~a~~~~~~~~~-------~~~~ 350 (394)
....-+...|++++|..+|.-..+.+.+ ..|.++.-... ... ...|..+.+.... ..+.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 3445567889999999999999885555 55555543333 222 2233333333322 1122
Q ss_pred CCchHHHHHHH-----HhhcCCcccHHHHHHHh
Q 016128 351 NPTPFVILSNI-----YAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 351 ~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 378 (394)
+..++..|... +.+.|+|++|++.++++
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 23344444443 45789999998877765
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.25 E-value=0.12 Score=46.34 Aligned_cols=129 Identities=14% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
.+.++..+-+.|..+.|+.+.++-. .-.....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555555555555555433211 1123334455555554433221 244455555555555
Q ss_pred cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHH
Q 016128 161 LSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
.|+++-|++.+.+... +..|+-.|.-.|+.+.-.++.+.....+. ++....++...|+.++..+++.
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC----HHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555554322 23344445555555444444444333211 2333334444455555544443
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=96.24 E-value=0.078 Score=46.59 Aligned_cols=116 Identities=7% Similarity=0.006 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHh---------cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGR---------SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
..+.|..+|.+......+.|+. ..|..+..++.. ..+..+|.+..++..+ |++. ....+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888898887433556653 344444333321 2345567777777776 5555 7777777778888
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+.+.|...|+++..++|+...+|...+..+.-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999986553
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.20 E-value=0.51 Score=38.05 Aligned_cols=220 Identities=17% Similarity=0.117 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccchhhHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQST-GMVPSLKCVTSVLSACADLSALKLGKE 169 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 169 (394)
+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555442221 2455566666666666677666666665542 123344455555555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHHcCCchHHHHHHHHhhcCCC----ChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 170 THGHVIRADLNKDESMATALIS-MYMKCGQPSWARRFFDQFEIKPD----DPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.+.........+. ........ .+...|+++.|...+.+.....+ ....+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 6666665443321 11122222 56666777777777766533211 112233333334556667777777776665
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421113455556666666666667777666666542 222 23333333333355556666666665554
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.17 E-value=0.34 Score=35.79 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNG 92 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~ 92 (394)
....++..+.+.+.+.....+++.+.+.+ +.+...++.++..|++.+ ..+..+.++. ..+......++..|.+.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcC
Confidence 34567777777778888888888888777 467778888888888764 3344444442 223334445667777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL-GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 159 (394)
.++++.-++.++.. |...+..+... ++.+.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777665532 12223333333 5666666665541 14445555555443
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.13 E-value=0.8 Score=39.74 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=44.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhhc---cchhhHHHHHHHHHHHcCCCCCHHHHHHH
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKMQSTG---MVPSLKCVTSVLSACAD---LSALKLGKETHGHVIRADLNKDESMATAL 189 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 189 (394)
...++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|.+++..+......+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555777777777777777776531 11122222233344445 67777777777775555556666666666
Q ss_pred HHHH
Q 016128 190 ISMY 193 (394)
Q Consensus 190 ~~~~ 193 (394)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6554
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.17 Score=42.24 Aligned_cols=155 Identities=12% Similarity=-0.006 Sum_probs=97.8
Q ss_pred HcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH----HHHHHHHccCCHHH
Q 016128 195 KCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV----AVLSACGHAGHVDK 269 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~ 269 (394)
..|+..+|-..++++.+. |.|...++-.=.+|...|+.+.-...++++... -.||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456777777777776655 667777777777888888888888888777654 233332222 23334456788888
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C--Ch---hhHHHHHHHHHhcCCchHHHHHHH
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P--TV---SVYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~---~~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
|++.-++..+ --+.|.....++...+...|+..++.++..+-.. . .. .-|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888777764 2234555666677777778888888888776654 1 11 123333444556678888888886
Q ss_pred HHH--hhCCCCC
Q 016128 343 KLQ--EMEPENP 352 (394)
Q Consensus 343 ~~~--~~~~~~~ 352 (394)
.-+ +...++.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 433 2334444
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=1.3 Score=41.45 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=81.4
Q ss_pred HHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 271 LQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
.++.+.+..+++.....-+.+--+..+...|+..+|.++-.+..-||-..|..-+.+++..+++++-+++.+. ..
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAks---kk-- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKS---KK-- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhc---cC--
Confidence 3444555555565555556677777888899999999999999999999888889999999998876665432 22
Q ss_pred CCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 351 NPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
+|.-|.-...+|.+.|+.++|.+++.+..
T Consensus 743 sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 743 SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 36778888999999999999999887654
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.04 E-value=0.75 Score=38.66 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=13.3
Q ss_pred hhhHhHHHHHHHHHHHHhhh
Q 016128 22 ASLLYLQFGRQVHGLTLKIE 41 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~ 41 (394)
.+.|+++.|..++.+.....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~ 23 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL 23 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH
Confidence 45677777777777766533
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.59 Score=37.39 Aligned_cols=204 Identities=12% Similarity=0.066 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
...|.....+|-...++++|...+.+... +.|...| -....++.|.-+.+++.+. .--+..|+.....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34556666677778888888888777653 2222222 1223345555555555543 11233455566667
Q ss_pred HccCCHHHHHHHHHHHHhC--CCCCCHH--HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 124 SQLGMRFEAFKLFEKMQST--GMVPSLK--CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~--~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
...|..+.|-..+++.-+. ++.|+.. .|..-+...-..++...|. ..+......+.+..++
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------------el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------------ELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------------HHHHHhhhHhhhhHHh
Confidence 7777777766666654321 2333321 1222222222222222222 2233344455555666
Q ss_pred hHHHHHHHHhhcC-------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC---CCCCHhhHHHHHHHHHccCCHHH
Q 016128 200 SWARRFFDQFEIK-------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK---VKPNSASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 200 ~~a~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 269 (394)
++|-..|.+-... +.....|-..|-.+....++..|...++.--+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6555444432110 1111224445555556667777777776643332 122445666666666 3466666
Q ss_pred HHHHH
Q 016128 270 ALQIF 274 (394)
Q Consensus 270 a~~~~ 274 (394)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55543
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.91 E-value=2 Score=42.50 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCHhhHH----HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---h
Q 016128 248 KPNSASFV----AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---V 320 (394)
Q Consensus 248 ~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~ 320 (394)
.|+...+. +....+.....+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++..+.+. +
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHH
Confidence 45554443 444455566777777777666542 234567788888888888888888764444 2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHH
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
-..|+.-+...+++-+|-++..+.... ....+..+++...|++|+++..
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHHHHHHHH
Confidence 366777777777777777766554221 1222333444455555555543
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.88 E-value=1.3 Score=40.24 Aligned_cols=179 Identities=16% Similarity=0.161 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC--CCHhhHHHHHHH
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK--PNSASFVAVLSA 260 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 260 (394)
.+|..-+..-.+.|+.+.+.-+|++.... ..=...|-..+.-....|+.+-|..++....+--++ |....+.+. .
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR--F 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--H
Confidence 44444555555566666666666665442 111222444444444457777666666655443322 222222222 2
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHh-hHHHHHHHHHhcCcHHHHH---HHHHhCCC--CChhhHHHHHHH-----HH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQE-HFGCMVDLLGRSGRLDEAR---ELIRELPE--PTVSVYHSLLGA-----CW 329 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~~~~~~~~--~~~~~~~~l~~~-----~~ 329 (394)
+-..|+++.|..+++.+... . |+.. .-..-+....+.|..+.+. +++....+ .+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 33467899999999998874 3 4432 2222344456677777777 44444443 111122222221 23
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 330 CHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
-.++.+.|..++.++.+..|++...|..++......+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 36788999999999999999999999999888776653
No 268
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.87 E-value=1.4 Score=40.20 Aligned_cols=122 Identities=13% Similarity=0.032 Sum_probs=82.5
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHH
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLG 326 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 326 (394)
+..+|...+..-...|+.+.+.-+|+...- .+..-...|-..++-....|+.+-|..++.+..+ |.......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 345677777777788888888888887764 3333445566666666667888888888777665 33332222222
Q ss_pred -HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHH
Q 016128 327 -ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 327 -~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 373 (394)
..-..|+...|..+++.+.+--|.....-..-+....+.|..+.+..
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 23346788888888888887667666666666777777888887773
No 269
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.80 E-value=1.3 Score=39.53 Aligned_cols=179 Identities=9% Similarity=0.079 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHH
Q 016128 145 VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMIS 224 (394)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~ 224 (394)
..|.....+++..+.....+.-++.+..+|...| -+...+..++.+|... ..+.-..+++++....-+......-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3455566667777777777777777777777665 3556666777777776 556666666665544333333333333
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCC------HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPN------SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
.+...++.+.+...|.++...- .|. ...|..+.... ..+.+....+...+....|...-...+..+-..|.
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333366777777777665542 221 12344443321 34666777777777665555555666666667777
Q ss_pred hcCcHHHHHHHHHhCCCC---ChhhHHHHHHHHH
Q 016128 299 RSGRLDEARELIRELPEP---TVSVYHSLLGACW 329 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 329 (394)
...++.+|++++..+.+. |...-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 788888888888877663 3334444554443
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.78 E-value=0.59 Score=35.37 Aligned_cols=134 Identities=11% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 98 MELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 98 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
.+.+..+.+.|+.|+...+..++..+.+.|++... ..+...++-+|.......+-.+.. ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34555566677778888888888888888776543 444555566666555544433222 222333333333222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 178 DLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
= ...+..+++.+...|++-+|.++.+.... .+......++.+..+.+|...-..+++-..
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~--~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHK--VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCC--cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 01234455566666777777766665432 111122444555555555444444444433
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.77 E-value=0.098 Score=42.53 Aligned_cols=98 Identities=16% Similarity=0.248 Sum_probs=62.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHhh-----cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc--------------
Q 016128 204 RFFDQFEIKPDDPAFWNAMISGYGR-----NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA-------------- 264 (394)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 264 (394)
..|.......++-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3344444333555566666655543 244555566667777777777777777777665432
Q ss_pred --CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc
Q 016128 265 --GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302 (394)
Q Consensus 265 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (394)
.+-+-+++++++|... |+.||..+-..|+.++.+.+-
T Consensus 135 YP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred CchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 2234567778888766 888888888888888877664
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.75 E-value=0.024 Score=43.39 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=66.4
Q ss_pred HHHHccCCHHHHHHHHHHchhcCCCCCCH-----hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh
Q 016128 259 SACGHAGHVDKALQIFTMMDDDFGLKPKQ-----EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC 330 (394)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~ 330 (394)
.-+...|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.-....++ |... ....-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4467788888888888888763 33322 2333334567778888888877777766 3322 44455567777
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 331 HLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
...+++|++-|+++.+.+|....+-...++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 788888888888888888876555444443
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.74 E-value=0.85 Score=36.91 Aligned_cols=55 Identities=24% Similarity=0.082 Sum_probs=29.1
Q ss_pred HHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGM--VPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.++++.|....++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455666666666666664321 112334444455555566666666666555444
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.66 E-value=0.021 Score=30.07 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
+|..+..++...|++++|+..|+++++++|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5677788888888888888888888888875
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.65 E-value=0.22 Score=44.09 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=49.0
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC-CCCC
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PT--VS-VYHSLLGACWCHLNSDLGEEMAMKLQEME-PENP 352 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 352 (394)
..+-..+..+..+.|+.++|.+.++++.+ |. .. +...|+.++...+.+.++..++.+..+.. |.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 44445567777788999999999888864 33 22 77788889999999999998888876554 4443
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.65 E-value=0.03 Score=29.32 Aligned_cols=32 Identities=25% Similarity=0.174 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.|..+..++...|++++|++.++++.++.|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45667777888888888888888888888754
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.65 E-value=0.9 Score=38.66 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHhhccchhhHHHHHHHHHHHcC-----CCCCHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQST-GMVP---SLKCVTSVLSACADLSALKLGKETHGHVIRAD-----LNKDESM 185 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 185 (394)
+|..+.+++.+..++.+++.+-..-... |..| --....++..++...+.++++.+.|+...+.- ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444444554444555555444333221 2111 01222345555666666666666666654321 1123456
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcC----C-CChhh-H-----HHHHHHHhhcCChhhHHHHHHHHHH----cCCCC-
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIK----P-DDPAF-W-----NAMISGYGRNGEYESAVEIFDLMQQ----EKVKP- 249 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~-~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~- 249 (394)
+..|...|.+..++++|.-+....... . .|... | -.+..++...|....|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666777777777777666554432111 1 12211 2 2233455566666666666655433 33221
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
.......+.+.|...|+.|.|..-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12334456666777777777766665543
No 278
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.27 Score=40.71 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=78.5
Q ss_pred hhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 016128 40 IEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNIL-----TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPA 114 (394)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 114 (394)
.|.+.+..+...++..-.+..++++++..+-+++.+|+.. +-.+++..+. .-+.++++.++..=++-|+.||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4556666677777777777899999999999888654432 1122233332 346779999999889999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887654
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=2.2 Score=40.55 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=40.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 292 CMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
-++..+.+..+++.+..+.+...+-+...|..++..+++.+..+...+...++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 4566777778888888888877766666888899988888877666665555544
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.56 E-value=1.5 Score=38.39 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCC----CCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEP----ENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+|..++..+.+.|.++.|...+.++....+ ..+.....-+..+...|+..+|+..++....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677777777777777777777777766441 2455566666777777777777777777665
No 281
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.52 E-value=2.3 Score=40.43 Aligned_cols=112 Identities=10% Similarity=-0.056 Sum_probs=51.9
Q ss_pred CChhhHHHHHHHHHHcC-CCCCH--hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 016128 230 GEYESAVEIFDLMQQEK-VKPNS--ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (394)
.+.+.|..++....... ..+.. .....+.......+..+++...+...... ..+......-++.-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 44566666666553332 21111 12222322222222244445555443321 12333344444444466666666
Q ss_pred HHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHH
Q 016128 307 RELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKL 344 (394)
Q Consensus 307 ~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 344 (394)
...+..|.. .+.. -.--+.+++...|+.++|...|+.+
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666654 1111 2333445555566777776666665
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.44 E-value=0.058 Score=44.43 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|++.++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 33444444444455555555555555555555555555555555555555555554444
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.38 E-value=0.042 Score=31.04 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=10.4
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
..+...|...|++++|+++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.37 E-value=0.32 Score=40.22 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS-----TGMVPSLKCVTSVL 155 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~ 155 (394)
+..++..+...|+++.+...++++...... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 444556666667777777777777766433 666777777777777777777777776654 35666555554444
Q ss_pred HH
Q 016128 156 SA 157 (394)
Q Consensus 156 ~~ 157 (394)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 285
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.36 E-value=1.9 Score=38.31 Aligned_cols=126 Identities=10% Similarity=0.025 Sum_probs=82.7
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcC
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNG 92 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~ 92 (394)
..-|..-...|++-.|-+-+...+..- +.++.........+...|+++.+...+..... .....+-..++....+.|
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence 334444445677666655444444322 33333333333446678999999998876654 345667888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
++++|..+-+-|....+. ++..........-..|-++++...++++...
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 999999999999887666 5554444444445556788888888887654
No 286
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.35 E-value=0.52 Score=38.74 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+++.....|...|.+.+|.++.+++...+|-+...+..++..+...||--+|...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4566668899999999999999999999999999999999999999998888888877743
No 287
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.31 E-value=5.1 Score=43.05 Aligned_cols=318 Identities=9% Similarity=0.039 Sum_probs=174.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc----C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016128 51 ALVDMYLKCGCLPCAHNVFQELKG----S-RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125 (394)
Q Consensus 51 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 125 (394)
.+..+=.+++.+.+|...+++-.. + .....|..+...|...+++|....+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344456678999999999998422 1 1223355555599999999998887764221 22222 34445677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRF 205 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (394)
.|++..|...|+.+.+.+ ++...+++.++......+.++...-..+........-....++.-+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999999874 3346778888888777888877776555544332221223333344555677888777776
Q ss_pred HHHhhcCCCChhhHHHH--HHHHhhcC--ChhhHHHHHHHHHHcCCCC---------CHhhHHHHHHHHHccCCHHHHHH
Q 016128 206 FDQFEIKPDDPAFWNAM--ISGYGRNG--EYESAVEIFDLMQQEKVKP---------NSASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 206 ~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
.. . .+..+|... ...+.+.. +.-.-.+.++.+++.-+.| -...|..++....- .+.+...+
T Consensus 1541 l~---~--~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-~el~~~~~ 1614 (2382)
T KOG0890|consen 1541 LS---D--RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-LELENSIE 1614 (2382)
T ss_pred hh---c--ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55 2 344455444 23332222 2212223333333221111 11233333333221 11222222
Q ss_pred HHHHchhcCCCCCCHhhHHHHH---HHHHhcCcHHHHH-HHHHhC--C---CCChh-hHHHHHHHHHhcCCchHHHHHHH
Q 016128 273 IFTMMDDDFGLKPKQEHFGCMV---DLLGRSGRLDEAR-ELIREL--P---EPTVS-VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~-~~~~~~--~---~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
.+...........+...|..-+ ..+.+...+=-|. +.+... . ..... +|-...+.....|+++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222211101111111111111 1122211111111 111111 1 12333 88888888888999999988877
Q ss_pred HHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 343 KLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
.+.+.. -+..+...+..+.+.|+...|+.++++..+...
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 777766 356788888889999999999999988775443
No 288
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.29 E-value=0.51 Score=33.65 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=57.5
Q ss_pred HHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCH---HHHHHHHHHHHccCC
Q 016128 55 MYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKPDP---ATWNSMISGFSQLGM 128 (394)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~l~~~~~~~~~ 128 (394)
+++..|+++.|++.|.+... +.....||.-..++--.|+.++|++-+++..+. |.+ .. .+|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 45666778888877777654 456667777777777777777777777777664 322 22 223333445666777
Q ss_pred HHHHHHHHHHHHhCC
Q 016128 129 RFEAFKLFEKMQSTG 143 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~ 143 (394)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666555
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=1.1 Score=34.59 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH--HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHH-----
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV--AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG----- 291 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 291 (394)
|..++.... .+.. +......++..........++. .+...+...+++++|+..++..... |....+.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHH
Confidence 444554443 2333 5555556666543221222222 3445678889999999999988753 2222333
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 292 CMVDLLGRSGRLDEARELIRELPEPTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
.|.+.....|.+++|+..++...+++-. ....-.+.+...|+.++|...|+++.+.++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 3556778899999999999998876444 455566889999999999999999999874
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=1.2 Score=33.75 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=89.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDP-ATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK-CVT 152 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~ 152 (394)
+.+...|..-++ +++.+..++|+.-|..+.+.|...=+ -............|+...|...|++.-.....|-.. -..
T Consensus 56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 344445555444 35677889999999999887654211 122233445677889999999999987654444332 112
Q ss_pred HH--HHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 153 SV--LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 153 ~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
.| .-.+...|.++......+.+...+.+.-...-..|.-+-.+.|++.+|.+.|.++...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 22 2234567788887777777665554545555667777777888888888888887664
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.91 E-value=1.3 Score=37.45 Aligned_cols=53 Identities=9% Similarity=0.206 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC----HHHHHHHHHHchhcCCCC
Q 016128 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH----VDKALQIFTMMDDDFGLK 284 (394)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~ 284 (394)
...+.++++.+.+.|+++....|..+.-...-.+. .+...++.+.+.+..++.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCcccC
Confidence 34678888888888888777777665443322222 333444445554443433
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.85 E-value=0.06 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.065 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
+|..+...+...|++++|...|+++.++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777777888888888888888877773
No 293
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=2.4 Score=35.84 Aligned_cols=151 Identities=13% Similarity=0.036 Sum_probs=107.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHhhccchhh
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST---GMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
-..|++.+|-..++++.+. .+.|..++...=.++.-.|+...-...++++... +++..+..-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467788888888888776 3447777777778888889988888888887754 33333333344555567788999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChh-----hHHHHHHHHhhcCChhhHHHHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPA-----FWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
+|++.-++..+.+ +.|.-...++.+.+...|+..++.++..+-...-.... .|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888888776 44667777888888889999999998877655422111 12233344566789999999998
Q ss_pred H
Q 016128 241 L 241 (394)
Q Consensus 241 ~ 241 (394)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.61 E-value=0.071 Score=28.49 Aligned_cols=24 Identities=8% Similarity=-0.130 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKL 344 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~ 344 (394)
|..|...|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.51 E-value=1.6 Score=33.10 Aligned_cols=133 Identities=11% Similarity=0.021 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHH-----HHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHH--
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMI-----AGMMLNGRSEKAMELFEGLAHEGFKPDPA-TWNS-- 118 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~-- 118 (394)
..|...++ +++.+..++|+.-|..+. +.+...|-.|. ....+.|+...|...|++.-.....|-.. -...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~le-ktg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLE-KTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444443 456788899999998888 55555554443 45667899999999999988764444332 1111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC
Q 016128 119 MISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK 181 (394)
Q Consensus 119 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 181 (394)
-.-.+...|.++++....+-+-..+-+.....-..|.-+-.+.|++..|.+.|..+......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 123456778888888877777665544445555677777788999999999999887654444
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.48 E-value=0.56 Score=36.24 Aligned_cols=94 Identities=18% Similarity=0.040 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhccC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKGS-----RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMIS 121 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 121 (394)
..+..+...|.+.|+.+.|.+.|.++... .-...+-.+|......+++..+...+++....-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46778888999999999999999988752 1233466778888888888888888777665422222121111111
Q ss_pred -----HHHccCCHHHHHHHHHHHH
Q 016128 122 -----GFSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 122 -----~~~~~~~~~~a~~~~~~m~ 140 (394)
.+...+++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2334677888877776654
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.15 E-value=2.1 Score=33.13 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcCCCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIKPDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.+..+...|.+.|+.+.|.+.|.++.....+ ...+-.++......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445666666666666666666665543211 22245555666666666666666655543
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.13 E-value=1.8 Score=32.40 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=8.5
Q ss_pred HHccCCHHHHHHHHHHHH
Q 016128 123 FSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~ 140 (394)
+...|+|.+|+.+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444555555554443
No 299
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.06 E-value=0.44 Score=31.87 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+ +..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 45567777888888888999999999999999999999999999988753 2224446666554
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.02 E-value=0.058 Score=40.08 Aligned_cols=129 Identities=18% Similarity=0.131 Sum_probs=82.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHH
Q 016128 16 SVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 95 (394)
.+++.+.+.+.+....++++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHH
Confidence 4677888889999999999999987766778999999999999988888888887433 133445667777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+|.-++.++....- .+..+...++++.|.+.+.+ .++...|..++..|...+.
T Consensus 88 ~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 77766655433210 01112233344444422211 2345677777777765544
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.97 E-value=7.4 Score=38.89 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHhhccc--hhhHHHHHHHHHHH
Q 016128 145 VPSLKCVTSVLSACADLS--ALKLGKETHGHVIR 176 (394)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 176 (394)
.|+ .....+|.++.+.+ .++.++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 33446677777666 56666666555554
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.95 E-value=0.27 Score=41.23 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=53.1
Q ss_pred HHHccCCHHHHHHHHHHchhcCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcCCch
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHLNSD 335 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 335 (394)
-|.++|.+++|+..|..... ..| ++.++..-..+|.+..++..|..-.......|.. .|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45566666666666665542 233 5555655566666666666665555544442221 4555555555566677
Q ss_pred HHHHHHHHHHhhCCCCCc
Q 016128 336 LGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~ 353 (394)
+|.+-++.+++++|.+..
T Consensus 183 EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhHHHHHhhCcccHH
Confidence 777777777777776543
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.90 E-value=0.16 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=14.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKM 139 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m 139 (394)
|..|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.88 E-value=0.8 Score=40.48 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=42.4
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 338 (394)
...|+++.+.+.+..... -+.....+...+++...+.|++++|...-..|.. .+..+...........|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 345566666555555432 2333444555555555566666666555555543 11112222222223345555565
Q ss_pred HHHHHHHhhCCCC
Q 016128 339 EMAMKLQEMEPEN 351 (394)
Q Consensus 339 ~~~~~~~~~~~~~ 351 (394)
-.|+++..+.|+.
T Consensus 412 ~~wk~~~~~~~~~ 424 (831)
T PRK15180 412 HYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccCChh
Confidence 5666555555433
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.62 E-value=0.4 Score=32.42 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 335667777777788899999999999999999999999999999887533 33336766664
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.39 E-value=0.15 Score=26.84 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=17.1
Q ss_pred HHHhhhcCCchHHHHHHHHHHHhcCChhHHH
Q 016128 36 LTLKIEKQSDTMIGTALVDMYLKCGCLPCAH 66 (394)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 66 (394)
+.++.. |.+...|+.+..+|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334333 445666666666666666666654
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=1.4 Score=35.06 Aligned_cols=32 Identities=3% Similarity=-0.132 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+--+..--+..+++.+|+++|+++....-+|+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33333444566788888888888877554443
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.08 E-value=3 Score=31.65 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 016128 30 GRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF 109 (394)
Q Consensus 30 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 109 (394)
..+..+.+.+.+++|+...+..+++.+.+.|++.....++..-. -+|.......+-.+. +....+.++=-+|.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V-i~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV-IPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc-cCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 34556666778889999999999999999999888888877644 334333333332222 2223333333333332
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 016128 110 KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIR 176 (394)
Q Consensus 110 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (394)
=...+..++..+...|++-+|+++.++.....-. + -..++.+..+.+|...-..+++-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~-~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSV-P---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC-C---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113566778888899999999888775332111 1 23344555555554444444444433
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.91 E-value=1.1 Score=34.67 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=58.2
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCH-----hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHH
Q 016128 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNS-----ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDL 296 (394)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 296 (394)
.+-+...|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.-.....+ +.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 44577888899999988888876 33322 2344444566777888888777666653 2332 1222223457
Q ss_pred HHhcCcHHHHHHHHHhCCC
Q 016128 297 LGRSGRLDEARELIRELPE 315 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~ 315 (394)
|.+...+++|++-|+.+.+
T Consensus 178 yek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 7788888888888888877
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.50 E-value=0.49 Score=34.69 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=40.1
Q ss_pred hcCcHHHHHHHHHhCCC--CChh---hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCc
Q 016128 299 RSGRLDEARELIRELPE--PTVS---VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~--~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (394)
..++++++..++..+.- |+.. ++... .+...|++++|+++++.+.+-.+..+..-..++.++.-.||.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 46777777777766653 4444 33333 355677778888777777666654444444444444444543
No 311
>PRK12798 chemotaxis protein; Reviewed
Probab=92.49 E-value=7 Score=34.37 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=104.9
Q ss_pred cCCchHHHHHHHHhhcC--CCChhhHHHHHHH-HhhcCChhhHHHHHHHHHHc--CCCCCHhhHHHHHHHHHccCCHHHH
Q 016128 196 CGQPSWARRFFDQFEIK--PDDPAFWNAMISG-YGRNGEYESAVEIFDLMQQE--KVKPNSASFVAVLSACGHAGHVDKA 270 (394)
Q Consensus 196 ~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 270 (394)
.|+..++.+.+..+... +.....+-.|+.+ .....+...|+++|+...-. |--........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 57777777777776544 3333445555544 34456777888888776542 1111223344444555677888887
Q ss_pred HHHHHHchhcCCCCCCHhhH-HHHHHHHHhc---CcHHHHHHHHHhCCCCChh-hHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 271 LQIFTMMDDDFGLKPKQEHF-GCMVDLLGRS---GRLDEARELIRELPEPTVS-VYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
..+-.....+|...|-..-| ..+...+.+. -..+.-..++..|..+... .|-.+.+.-.-.|+.+.|.-.-+++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 77666666554444433322 2233333333 2344555556666543333 88888888888888888888888888
Q ss_pred hhCCCCCchHHHHHHHHh-----hcCCcccHHHHHHHhhhccc
Q 016128 346 EMEPENPTPFVILSNIYA-----GLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~~~ 383 (394)
.+... ...-...+..|. -..+++++.+.+..+....+
T Consensus 285 ~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 285 KLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 76632 222222222222 23456666666666554443
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.48 E-value=0.25 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
+++.+...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555666666655555554
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.23 E-value=0.26 Score=36.59 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=67.5
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (394)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++... . .-...+++.+.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhc
Confidence 3455566666777777777777765545556667777777777766666666655221 1 1223445556666
Q ss_pred CcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
|.+++|.-++.++...+... ..+...++++.|.+++.+ .+++..|..++..+...++
T Consensus 84 ~l~~~a~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCc
Confidence 66666666666654311110 012233444444422211 2335566666666555443
No 314
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.00 E-value=9.2 Score=34.59 Aligned_cols=176 Identities=9% Similarity=0.057 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (394)
.|.....+++..+..+-++.-.+.+-.++..-+.+-..+-.++.+|... ..+.-..+|+++.+..+. |...-..|+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 4556667788888888888888888888877777788889999999988 678889999999887543 44444455555
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCC------HhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CChhhHHHHHHHHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPK------QEHFGCMVDLLGRSGRLDEARELIRELPE-----PTVSVYHSLLGACW 329 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~ 329 (394)
|-+ ++.+++..+|.++..+ +-|. ...|..|...- ..+.+....+...+.. .-.+.+.-+..-|.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 544 8888888888888763 2221 12344444321 3566677777666654 22235555667788
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 330 CHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...++++|++++..+.+.+..|.-+-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 8889999999999888888767666666655544
No 315
>PRK09687 putative lyase; Provisional
Probab=92.00 E-value=6.7 Score=33.02 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=93.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCCHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRS----EKAMELFEGLAHEGFKPDPATWNS 118 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ 118 (394)
.+|..+....+..+...|.. ++...+..+...+|...-...+.++.+.|+. +++...+..+... .|+..+-..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 34555555556666555543 2333333333355555555556666666652 3455555555333 334444444
Q ss_pred HHHHHHccCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016128 119 MISGFSQLGMR-----FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY 193 (394)
Q Consensus 119 l~~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (394)
.+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+.++
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aL 183 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 44444443211 122222222222 2233444445555555544 2333443333332 2334444444444
Q ss_pred HHcC-CchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 016128 194 MKCG-QPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 194 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
.+.+ +...+...+..+... ++..+-...+.++.+.|+. .++..+-+..+.+. .....+.++...|+. +|..
T Consensus 184 g~~~~~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQD-KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred hcCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHH
Confidence 4432 122333333333322 3444445555555555552 34444433333321 122344455555553 3444
Q ss_pred HHHHch
Q 016128 273 IFTMMD 278 (394)
Q Consensus 273 ~~~~~~ 278 (394)
.+..+.
T Consensus 256 ~L~~l~ 261 (280)
T PRK09687 256 VLDTLL 261 (280)
T ss_pred HHHHHH
Confidence 444444
No 316
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.98 E-value=22 Score=38.82 Aligned_cols=313 Identities=10% Similarity=0.005 Sum_probs=166.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHH----HhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 016128 16 SVISACASLLYLQFGRQVHGLT----LKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLN 91 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~ 91 (394)
++..+=.+.+.+..|.-.++.- .+.. -....+-.+...|+.-+++|...-+...-...|+. +. -|--....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~~-qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--YQ-QILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--HH-HHHHHHhh
Confidence 3444555678888888888873 2211 12334445555899999999888888752224443 22 34445668
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHhhccchhhHHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTS-VLSACADLSALKLGKET 170 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~ 170 (394)
|++..|..-|+.+.+.+.. ...+++-++......|.++.++-..+-.... ..+....++. -+.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 9999999999999987422 4778888888888888888887766555543 2333333333 34444667777776666
Q ss_pred HHHHHHcCCCCCHHHHHH--HHHHHHHcCCch-----HHHHHHHHhhcC--------CCChhhHHHHHHHHhhcCChhhH
Q 016128 171 HGHVIRADLNKDESMATA--LISMYMKCGQPS-----WARRFFDQFEIK--------PDDPAFWNAMISGYGRNGEYESA 235 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~-----~a~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a 235 (394)
.. .. +..+|.. ++....+..+-+ +..+..++.... +.-...|..++..+.-..-....
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 54 11 1122221 222222222111 111111111110 10012244444443322111111
Q ss_pred HHHHHHHHHcCCCCCHhh------HHHHHHHHHccCCHHHHHHHHHHc-hh---cCCC-CCCHhhHHHHHHHHHhcCcHH
Q 016128 236 VEIFDLMQQEKVKPNSAS------FVAVLSACGHAGHVDKALQIFTMM-DD---DFGL-KPKQEHFGCMVDLLGRSGRLD 304 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~-~~---~~~~-~~~~~~~~~l~~~~~~~g~~~ 304 (394)
. ... +..++..+ |..-+..-....+..+-+--+++. .. +.+. ..-..+|-...+...+.|+++
T Consensus 1614 ~----~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1614 E----ELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred H----Hhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1 111 11222211 111111111111111111111111 11 0011 122457778888888899999
Q ss_pred HHHHHHHhCCCCChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 305 EARELIRELPEPTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 305 ~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.|...+-...+.... .+-..+.-+...|+...|+.++++..+..
T Consensus 1688 ~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 998877776664444 78888888999999999999999998754
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.92 E-value=0.32 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=14.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555555555553
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.78 E-value=0.15 Score=24.80 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=15.8
Q ss_pred hHHHHHHHHhhcCCcccHHHHHH
Q 016128 354 PFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
....++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777664
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.74 E-value=4.1 Score=30.07 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 016128 88 MMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~ 107 (394)
++..|++++|.++|++..+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34455555555555555444
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.61 E-value=12 Score=35.17 Aligned_cols=275 Identities=11% Similarity=0.057 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHH----H-HHccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHhhcc
Q 016128 94 SEKAMELFEGLAHEGFKPDPATWNSMIS----G-FSQLGMRFEAFKLFEKMQS-------TGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 94 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~----~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~ 161 (394)
...|.+.++...+.|. ......+.. + +...++.+.|+.+|+...+ .|. ......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcC
Confidence 4678888888877753 222222222 2 4466789999999998876 442 23455566666553
Q ss_pred c-----hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCchHHHHHHHHhhcCCCChhhHHHHHHHH---hhcCCh
Q 016128 162 S-----ALKLGKETHGHVIRADLNKDESMATALISMYMK-CGQPSWARRFFDQFEIKPDDPAFWNAMISGY---GRNGEY 232 (394)
Q Consensus 162 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~ 232 (394)
. +.+.|..++....+.|. |+.......+..... ..+...|.++|......+.....+..-+.-. ....+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 2 66779999999888874 444443333222222 2356789999988877654444433322211 134578
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH---Hh----cCcHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL---GR----SGRLDE 305 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~ 305 (394)
..|..++++..+.| .|...--...+..+.. ++++.+...+..+... +.+.....-..++... .. ..+.+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhH
Confidence 88999999998887 3332222233333444 6666666665555443 3322211111111111 11 224555
Q ss_pred HHHHHHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC---CcccHHHHHHH
Q 016128 306 ARELIRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG---RWEDVGRIRQM 377 (394)
Q Consensus 306 a~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~ 377 (394)
+...+.+....... ....+...|.. ..+++.|...+..+.... ......++..+..-- .+..|.+++++
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 66666655543333 55555554433 235778888888777666 566666666665432 14567777776
Q ss_pred hhhc
Q 016128 378 INDR 381 (394)
Q Consensus 378 m~~~ 381 (394)
....
T Consensus 535 ~~~~ 538 (552)
T KOG1550|consen 535 ASEE 538 (552)
T ss_pred HHhc
Confidence 6553
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.60 E-value=4.6 Score=30.33 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHcCCchHHHHHHHHhhcC
Q 016128 193 YMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 193 ~~~~g~~~~a~~~~~~~~~~ 212 (394)
+...|++.+|..+|+++...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 44555555555555555554
No 322
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.48 E-value=14 Score=35.81 Aligned_cols=216 Identities=12% Similarity=0.024 Sum_probs=109.4
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCH----H---HHHHH-HHHHHHcCCchHHHHHHHHhhcC-C-----CChhhHHHHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDE----S---MATAL-ISMYMKCGQPSWARRFFDQFEIK-P-----DDPAFWNAMIS 224 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l-~~~~~~~g~~~~a~~~~~~~~~~-~-----~~~~~~~~l~~ 224 (394)
....++.+|..++.++...-..|+. . .++.| .......|++++|.++.+..... + .....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4556777777777776543222211 1 12221 12233467888888887775443 2 23334666777
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHhh---HHHHH--HHHHccCC--HHHHHHHHHHchhcCCC--C---CCHhhHHH
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPNSAS---FVAVL--SACGHAGH--VDKALQIFTMMDDDFGL--K---PKQEHFGC 292 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~--~---~~~~~~~~ 292 (394)
+..-.|++++|..+.++..+..-.-+... +..+. ..+...|+ .++.+..+......... + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77888999999888877655422223322 22222 22445553 23333333333221111 1 11223344
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC------CChh----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC-Cch-HHHH--
Q 016128 293 MVDLLGRSGRLDEARELIRELPE------PTVS----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN-PTP-FVIL-- 358 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~------~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-~~~l-- 358 (394)
+..++.+ .+.+..-.....+ |... .+..|+......|+.++|...+.++......+ +.+ |...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 4443333332222 2222 33366777788899999999888888755222 222 2211
Q ss_pred -H--HHHhhcCCcccHHHHHHH
Q 016128 359 -S--NIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 359 -~--~~~~~~g~~~~a~~~~~~ 377 (394)
+ ......|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1 123355777766665544
No 323
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.30 E-value=7.7 Score=32.32 Aligned_cols=64 Identities=5% Similarity=-0.050 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccchhhHHHHHHH
Q 016128 109 FKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST-GMVPSLKCVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 109 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
-.++..+...++..++..++|.+-.++++..... +..-|...|...|+.....|+..-...+..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555666666666666666655555433 334455556666666666666554444443
No 324
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.21 E-value=0.36 Score=40.59 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=70.0
Q ss_pred HHHHHhcCcHHHHHHHHHhCCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCccc
Q 016128 294 VDLLGRSGRLDEARELIRELPE--P-TVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWED 370 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (394)
...|.+.|.+++|+..|..... | +.+++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|...+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 3568899999999999998877 6 556888888899999999999988888888887666777777777777777777
Q ss_pred HHHHHHHhhh
Q 016128 371 VGRIRQMIND 380 (394)
Q Consensus 371 a~~~~~~m~~ 380 (394)
|.+-.+....
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 7766666554
No 325
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.11 E-value=0.16 Score=42.57 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=42.6
Q ss_pred cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHH
Q 016128 300 SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 300 ~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
.|.++.|++.|...++ |+.. .|..-..++.+.++...|++-+..+.+++|+...-|-.-..+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 3445555555554444 2222 444444455555555555555555555555555555555555555555555555555
Q ss_pred Hhhhccc
Q 016128 377 MINDRQL 383 (394)
Q Consensus 377 ~m~~~~~ 383 (394)
...+.++
T Consensus 207 ~a~kld~ 213 (377)
T KOG1308|consen 207 LACKLDY 213 (377)
T ss_pred HHHhccc
Confidence 5554444
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.07 E-value=2.9 Score=35.04 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC-----ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh
Q 016128 178 DLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD-----DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (394)
|......+...++..-....+++.++..+-++...+. +... .+.++. +-.-++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 3334444445555555556677777777776665421 1111 122222 23345678888888888888899999
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
+++.+++.+.+.+++..|..+...|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999988888887776654
No 327
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.00 E-value=0.68 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=12.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555554443
No 328
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.78 E-value=0.21 Score=26.00 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=24.8
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..+..++.++.+.|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.72 E-value=2.7 Score=28.28 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 140 (394)
++.+-++.+....+.|++....+.+++|.+.+++.-|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555555566666666666666666666666665554
No 330
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.59 E-value=3.8 Score=27.91 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=15.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhh
Q 016128 174 VIRADLNKDESMATALISMYMKCGQPSWARRFFDQFE 210 (394)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 210 (394)
+...++.|++.+..+.+.++.+.+++..|.++|+.+.
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.36 E-value=0.83 Score=24.96 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 114 ATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776643
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.34 E-value=3.5 Score=32.26 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC--CCCCCHhhHHHHHHHHHhcCcHHHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF--GLKPKQEHFGCMVDLLGRSGRLDEAR 307 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (394)
+.|.+.|-++...+..-++.....|...|. ..+.+++..++....+-. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666665545555555555554 467777777776665432 22566777777777777777777664
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.05 E-value=4.1 Score=31.88 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=52.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCc
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA---DLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
+.+.|+ +.|.+.|-++...+..-++.....+...|. ..+.+++..++-...+. +-.+|+.++.+|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344443 557777777776665545555555555444 56777777777776543 2356788888888888888888
Q ss_pred hHHH
Q 016128 200 SWAR 203 (394)
Q Consensus 200 ~~a~ 203 (394)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 334
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=0.88 Score=36.32 Aligned_cols=83 Identities=11% Similarity=0.012 Sum_probs=44.5
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhh-HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEH-FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDL 336 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~ 336 (394)
|....+++.|+..+.+.. .+.|+..+ |..=+..+.+..+++.+..--.+..+ |+.+ ..-.+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444455666666555544 33455433 33444455556666655555444444 5555 44445555556666666
Q ss_pred HHHHHHHHHh
Q 016128 337 GEEMAMKLQE 346 (394)
Q Consensus 337 a~~~~~~~~~ 346 (394)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666644
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.91 E-value=4.4 Score=36.21 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=35.6
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC 64 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 64 (394)
-...+.++...+++..+...|.......+|.-+..|.+.|....
T Consensus 27 ~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~ 70 (696)
T KOG2471|consen 27 QFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH 70 (696)
T ss_pred ccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh
Confidence 34567899999999999999977777788888888888886543
No 336
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.77 E-value=13 Score=32.53 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCCC
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG-----SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE---------GFKPD 112 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------g~~p~ 112 (394)
..+..+...|..+|+++.|++.+.+.+. +..+..|-.+|..-+-.|+|........+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4667788888889999999999888664 123345666677777778887777776666543 12223
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-C-----CCCCHHHHHHHHHHhhccchhhHHHHHHHHHH-HcCCCCCHHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQST-G-----MVPSLKCVTSVLSACADLSALKLGKETHGHVI-RADLNKDESM 185 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~ 185 (394)
...+..+.....+ ++..|.+.|-..... . +.|...+....+.+++--++-+.-..+..... +.-....+..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 3344444443333 566665555333211 0 23333333333444433333222222111110 0001223444
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhc
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
...+...| .+++..+.++++++..
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 44444444 3567777777777665
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.74 E-value=3.6 Score=31.46 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=32.4
Q ss_pred CChh-hHHHHHHHHHhcC-----------CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 316 PTVS-VYHSLLGACWCHL-----------NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
|+.. ++..+..++...+ .+++|...|+++.+.+|.| ..|..-+.... +|-++..++.+++
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 5555 6666665554432 2466667777777778866 45555545443 3555555555544
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.68 E-value=2.2 Score=33.67 Aligned_cols=57 Identities=16% Similarity=-0.051 Sum_probs=30.8
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHh
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQEL 72 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 72 (394)
+.-++.+.+.+.+.+++.....-++.. |.|...-..+++.++-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334445555555666665555544443 445555555666666666666665554443
No 339
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.62 E-value=0.52 Score=27.78 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
.+.-++.+.|++++|.+..+.+.+++|.|..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3556788999999999999999999998865543
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=18 Score=33.49 Aligned_cols=131 Identities=12% Similarity=0.020 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 128 (394)
-+.+.+.+.+.|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++..+.++
T Consensus 617 rt~va~Fle~~g~~e~AL~~s------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhccc
Confidence 344555555555555554431 11111 1223345566666665544322 44556666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016128 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (394)
+..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |....+|...|+++++.+++.+
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 6666666555432 334444444555555444444444444421 2222344455666666665544
Q ss_pred h
Q 016128 209 F 209 (394)
Q Consensus 209 ~ 209 (394)
-
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 3
No 341
>PRK09687 putative lyase; Provisional
Probab=89.12 E-value=13 Score=31.41 Aligned_cols=80 Identities=21% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHhCCCCCCHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR----FEAFKLFEKMQSTGMVPSLKC 150 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~ 150 (394)
.+|.......+..+...|.. ++...+..+... +|...-...+.++...|+. .++...+..+... .|+...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 55555555556666555542 233333333322 2444444555555555542 3455555555322 334444
Q ss_pred HHHHHHHhhc
Q 016128 151 VTSVLSACAD 160 (394)
Q Consensus 151 ~~~l~~~~~~ 160 (394)
-...+.++..
T Consensus 108 R~~A~~aLG~ 117 (280)
T PRK09687 108 RASAINATGH 117 (280)
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 342
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.82 E-value=3.1 Score=29.53 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
-+..+.++.+...++.|++......+++|.+.+++..|..+|+-++. ++.+....|..++.
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 35666777777888899999999999999999999999999999876 44444445655553
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.80 E-value=0.52 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 356 VILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 356 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357788888888888888888887654
No 344
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.77 E-value=13 Score=31.07 Aligned_cols=150 Identities=10% Similarity=0.004 Sum_probs=95.3
Q ss_pred CCCCChHHHHHHHHHhhh----------------hHhHHHHHHHHHHHHh-hhcCCchHHHHHHHHHHHh-cCC----hh
Q 016128 6 SDEPNSVTFISVISACAS----------------LLYLQFGRQVHGLTLK-IEKQSDTMIGTALVDMYLK-CGC----LP 63 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g~----~~ 63 (394)
|.+++..-+-.+++.+.. +..+.+|+.+|+..-. ..+-.|..+...+++.... .+. +-
T Consensus 107 g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alY 186 (292)
T PF13929_consen 107 GCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALY 186 (292)
T ss_pred CCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHH
Confidence 666666666666665332 2234445555552221 2244567777778877776 222 11
Q ss_pred HHHHHHHH-hccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH---
Q 016128 64 CAHNVFQE-LKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKPDPATWNSMISGFSQLGMRFEAFKLFEK--- 138 (394)
Q Consensus 64 ~A~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 138 (394)
+.+..+-. ....++..+...++..++..+++.+-.++++..... +..-|...|..+++.....|+..-..++.++
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhL 266 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHL 266 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCe
Confidence 22222211 112467778888999999999999999999988776 6677999999999999999998877666554
Q ss_pred --HHhCCCCCCHHHHHHHH
Q 016128 139 --MQSTGMVPSLKCVTSVL 155 (394)
Q Consensus 139 --m~~~~~~~~~~~~~~l~ 155 (394)
+.+.++..+...-..+-
T Consensus 267 LwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 267 LWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred EEeeecCCcCCHHHHHHHH
Confidence 23445555555444443
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.54 E-value=0.95 Score=22.40 Aligned_cols=29 Identities=24% Similarity=0.083 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
|..+...+...|+++.|...++...+..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555566666666666666655544
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.41 E-value=0.43 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.6
Q ss_pred hHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 354 PFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998864
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.27 E-value=19 Score=32.52 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=65.1
Q ss_pred CCHh-hHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHHHHH--hcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 285 PKQE-HFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLGACW--CHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 285 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
|+.. .-+.+++.+.+.|-..+|..++..+.. |....|..+++.-. ...+...+..+|+.+......++..|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 4433 345677777888888888888887776 23336777765432 22346677788887777554777888887
Q ss_pred HHHHhhcCCcccHHHHHHHhhh
Q 016128 359 SNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 359 ~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...-...|..+.+-.++-++.+
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHhhccCCCcccccHHHHHHHH
Confidence 7777788888887777665543
No 348
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.10 E-value=23 Score=33.29 Aligned_cols=147 Identities=13% Similarity=-0.039 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHH-----HHhcCChhHHHHHHHHhcc-------CCChhHHHHHHHHHHhcC--
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDM-----YLKCGCLPCAHNVFQELKG-------SRNILTWNTMIAGMMLNG-- 92 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~ll~~~~~~~-- 92 (394)
...+.++++...+.| +......+..+ +....+.+.|...|+.... ........-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345666666666655 22222222221 2344577777777766542 223334444555555432
Q ss_pred ---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--hccchhhH
Q 016128 93 ---RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ-LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC--ADLSALKL 166 (394)
Q Consensus 93 ---~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 166 (394)
+.+.|..++...-..|.+ +....-..+..... ..+...|.++|...-..|..+ ..-+..++-.. ....+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHH
Confidence 455566666666665432 33332222222222 234566666666666665332 11111111111 12235566
Q ss_pred HHHHHHHHHHcC
Q 016128 167 GKETHGHVIRAD 178 (394)
Q Consensus 167 a~~~~~~~~~~~ 178 (394)
|..++.+..+.|
T Consensus 383 A~~~~k~aA~~g 394 (552)
T KOG1550|consen 383 AFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHcc
Confidence 666666666665
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.10 E-value=27 Score=34.05 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=112.2
Q ss_pred HHHHcCCchHHHHHHHHhhcC--CCCh-------hhHHHHHH-HHhhcCChhhHHHHHHHHHHcC----CCCCHhhHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK--PDDP-------AFWNAMIS-GYGRNGEYESAVEIFDLMQQEK----VKPNSASFVAV 257 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~--~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 257 (394)
......++.+|..+..++... +++. ..|+.+-. .....|+++.|.++-+.....= ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344568899999998886544 1111 12444433 3446789999999988776541 23344556677
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhH---HHH--HHHHHhcCcHH--HHHHHHHhCCC------CC----hhh
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHF---GCM--VDLLGRSGRLD--EARELIRELPE------PT----VSV 320 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~~--~a~~~~~~~~~------~~----~~~ 320 (394)
..+..-.|++++|..+.+...+. .-.-+...+ ..+ ...+...|... +....|..... |- ..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77777889999999888766542 112233222 222 23455667333 33333333322 11 114
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhC----CCCCch---HHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCC
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEME----PENPTP---FVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISA 391 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 391 (394)
+..+..++.+ .+.+..-.....+.+ |..... +..|+......|+.++|...++++......+.+...|
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 4444444444 444444444443322 322222 2357788889999999999999998866555544444
No 350
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.05 E-value=0.77 Score=23.76 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.7
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.+|..++..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36788999999999999999999998764
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.87 E-value=11 Score=29.34 Aligned_cols=57 Identities=7% Similarity=-0.014 Sum_probs=27.0
Q ss_pred HHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
.......|++++|...++......-.......-.+.+...|+-++|..-|++..+.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344445555555555555544421122222333344555555555555555555543
No 352
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.50 E-value=13 Score=29.61 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADL-NKDESMATALIS 191 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 191 (394)
+.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|+++.|.+-+...-..+. .|-...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5567777777777888888888888777654322222222222 23345677777665555544432 222222222221
Q ss_pred HHHHcCCchHHHHHH-HHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC------CCHhhHHHHHHHHHcc
Q 016128 192 MYMKCGQPSWARRFF-DQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK------PNSASFVAVLSACGHA 264 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~ 264 (394)
..-++.+|..-+ ++... .+...|...+..|-- |+.. ...+++++....-. .-..||--+...+...
T Consensus 178 ---~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 223455554433 33333 344444433333221 1111 12233333221110 1135777888888888
Q ss_pred CCHHHHHHHHHHchhc
Q 016128 265 GHVDKALQIFTMMDDD 280 (394)
Q Consensus 265 ~~~~~a~~~~~~~~~~ 280 (394)
|+.++|..+|+-....
T Consensus 251 G~~~~A~~LfKLaian 266 (297)
T COG4785 251 GDLDEATALFKLAVAN 266 (297)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888888888877654
No 353
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=10 Score=35.07 Aligned_cols=131 Identities=16% Similarity=0.053 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNG 92 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~ 92 (394)
.-+.+..-+.++|-.++|+++ .+|+. .-.....+.|+++.|.++..+.. +..-|..|.++..+.+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d---~rFelal~lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPD---QRFELALKLGRLDIAFDLAVEAN---SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChh---hhhhhhhhcCcHHHHHHHHHhhc---chHHHHHHHHHHhhcc
Confidence 344555555566655555544 22322 11234456788888877766643 5566888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHH
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |... .++...|+++++.+++.
T Consensus 681 ~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~AF-----~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 681 ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLAF-----LAYFLSGDYEECLELLI 745 (794)
T ss_pred cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-chHH-----HHHHHcCCHHHHHHHHH
Confidence 88888887765443 455666666777766655555555555532 3222 23445677777776655
Q ss_pred H
Q 016128 173 H 173 (394)
Q Consensus 173 ~ 173 (394)
.
T Consensus 746 ~ 746 (794)
T KOG0276|consen 746 S 746 (794)
T ss_pred h
Confidence 4
No 354
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=3 Score=33.59 Aligned_cols=98 Identities=15% Similarity=0.037 Sum_probs=46.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcC-----CCCCCHh-----------hHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDF-----GLKPKQE-----------HFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
+...-.+-+.+.|++.+|..-|++..... .-+|... .+..+..++...|++-++++.-.++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 33344445566677777777666543210 1112111 112222334444555555555555443
Q ss_pred -CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 316 -PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 316 -~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
|+.+ .|-.-..+.+..=+..+|.+-|.++++++|.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3333 4444444544444555555555555555553
No 355
>PRK10941 hypothetical protein; Provisional
Probab=86.67 E-value=2.8 Score=34.87 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
.+-.+|.+.++++.|+++.+.+..+.|+++.-+.--+..|.+.|.+..|..-++...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444433
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.16 E-value=37 Score=33.59 Aligned_cols=339 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHH----HHhcCChhHHHHHHHHhccCCChhHHHHHHHHHH
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDM----YLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMM 89 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~ 89 (394)
+..=+..+.+..++++|..+-+.....+......+-..-+.- +...|++++|.+.|.++...| ..++..|-
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~-----~~vi~lfP 384 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDP-----RHVISLFP 384 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCh-----HHHHHhch
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHH----------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 016128 90 LNGRSEKAMELFEGLAHEGFKPDPATWN----------SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~----------~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 159 (394)
+-.-+-.......|..|+..... .++.-+....+-..+.-=...|... ...-+.......
T Consensus 385 -----~l~p~~~~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~~~m~~~-----~~~~~~~~s~~~ 454 (877)
T KOG2063|consen 385 -----DLLPSENSSIEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRREENKKLNKYKMLYM-----NYFKNTLISELL 454 (877)
T ss_pred -----hhcCCcccccceeeeccCchhhhccCcccchhhhhhhHhHHHHHHHHHHHHHhhhhHH-----hhhhccCcchhh
Q ss_pred ccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHH
Q 016128 160 DLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIF 239 (394)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (394)
....-+-+..+=..+.+.-...++.....++..-...-..++...++.+... |..|+..|...|+.++|+++|
T Consensus 455 ~~~~~~~~~~IDttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~-------y~~Li~LY~~kg~h~~AL~ll 527 (877)
T KOG2063|consen 455 KSDLNDILELIDTTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK-------YRELIELYATKGMHEKALQLL 527 (877)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhccc-------HHHHHHHHHhccchHHHHHHH
Q ss_pred HHHHH---cCCCCCHhhHHHHHHHHHccCCH--HHHHHHHHHchhcCCCCCCHhhHHH------------HHHHHHhcCc
Q 016128 240 DLMQQ---EKVKPNSASFVAVLSACGHAGHV--DKALQIFTMMDDDFGLKPKQEHFGC------------MVDLLGRSGR 302 (394)
Q Consensus 240 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~ 302 (394)
.+... ..-.--...+..++..+.+.+.. +-..++-+..... .......++.. -+-.|.....
T Consensus 528 ~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~ 606 (877)
T KOG2063|consen 528 RDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTSEDKQEAESISRDDVLNYLKSKE 606 (877)
T ss_pred HHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-CchhheeeeeccChhhhccCCHHHHHHHhhhhC
Q ss_pred HHHHHHHHHhCCC----CChhhHHHHHHHHHhcCC-----------------chHHHHHHHHHHhhCC-------CCCch
Q 016128 303 LDEARELIRELPE----PTVSVYHSLLGACWCHLN-----------------SDLGEEMAMKLQEMEP-------ENPTP 354 (394)
Q Consensus 303 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~~~~-------~~~~~ 354 (394)
.+-+..+++.+.. ++....+.++..|...=+ .+.....++.-....| +....
T Consensus 607 ~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l 686 (877)
T KOG2063|consen 607 PKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDEL 686 (877)
T ss_pred cchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhH
Q ss_pred HHHHHHHHhhcCCcccHHHHH
Q 016128 355 FVILSNIYAGLGRWEDVGRIR 375 (394)
Q Consensus 355 ~~~l~~~~~~~g~~~~a~~~~ 375 (394)
|...+-.+.+.|+-++|+.++
T Consensus 687 ~ee~aill~rl~khe~aL~Iy 707 (877)
T KOG2063|consen 687 YEERAILLGRLGKHEEALHIY 707 (877)
T ss_pred HHHHHHHHhhhhhHHHHHHHH
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.03 E-value=11 Score=28.95 Aligned_cols=107 Identities=13% Similarity=0.069 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHH---HhcCChhHHHHHHHHhcc--------CCC-hhHHHHHHHHHHhcC--
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMY---LKCGCLPCAHNVFQELKG--------SRN-ILTWNTMIAGMMLNG-- 92 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~ll~~~~~~~-- 92 (394)
++.|++.++.-...+ |.|...++.-..++ ++.....++.++++.... .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 556666666655555 55666555443333 333444445555444322 333 345555555544322
Q ss_pred --C-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 93 --R-------SEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 93 --~-------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
+ +++|.+.|+..... .|+..+|+.-+.... +|-.+..++.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 34444444444443 566666666665543 244455555444
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.87 E-value=2.3 Score=23.89 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=10.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
..+|...|+.+.|..++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 359
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.83 E-value=37 Score=33.20 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=80.6
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH
Q 016128 53 VDMYLKCGCLPCAHNVFQELKGSRNI--LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF 130 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 130 (394)
=+.|...|+++.|+++-+.- |+. ..+..-...|.+.+++..|.+++.++.+ .|..+.--+....+.+
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~---p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR---PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHhcchHHHHHHhccCC---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHH
Confidence 34566778888887765542 222 2233445667777888888888877633 2334444444444444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH-----HHh-hccchhh----HHHHHHHH--------HHH-cCCCCCHHHHHHHHH
Q 016128 131 EAFKLFEKMQSTGMVPSLKCVTSVL-----SAC-ADLSALK----LGKETHGH--------VIR-ADLNKDESMATALIS 191 (394)
Q Consensus 131 ~a~~~~~~m~~~~~~~~~~~~~~l~-----~~~-~~~~~~~----~a~~~~~~--------~~~-~~~~~~~~~~~~l~~ 191 (394)
+++.|-.=+-..++|...+-..++ ..+ .+.++++ ++.+-++. +.. .....+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Confidence 444332211112334333322222 221 1122211 22211111 110 001112222233334
Q ss_pred HHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (394)
.....|+.+....+-.-+.. |..++.-+.+.+.+++|++++..
T Consensus 513 l~~~~~~~e~ll~fA~l~~d-------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD-------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666655544444 56677777777777777776654
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.41 E-value=12 Score=31.02 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=5.9
Q ss_pred HHHHccCCHHHHHH
Q 016128 121 SGFSQLGMRFEAFK 134 (394)
Q Consensus 121 ~~~~~~~~~~~a~~ 134 (394)
.+++..++|.+++.
T Consensus 91 QALAEmnrWreVLs 104 (309)
T PF07163_consen 91 QALAEMNRWREVLS 104 (309)
T ss_pred HHHHHHhhHHHHHH
Confidence 33444444444443
No 361
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.35 E-value=25 Score=30.91 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=33.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCC-CCchHHHHHHHHh-hcCCcccHHHHHHHhh
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPE-NPTPFVILSNIYA-GLGRWEDVGRIRQMIN 379 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 379 (394)
.+..+.+.|.+..|.++.+-+..++|. ||-.....++.|+ +.++++--+++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 345556666666666666666666665 6655555555554 5566655555555443
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.09 E-value=24 Score=30.46 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh---cCcHHHHHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR---SGRLDEAREL 309 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~ 309 (394)
+.-+.++++..+.+. .+......++..+.+..+.++..+-|+.+... .+-+...|...+..... .-.++....+
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 445566666666532 34455556666666666666666677776653 22245555555544332 1223344333
Q ss_pred HHhCC-------CC------Ch-----h---hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 310 IRELP-------EP------TV-----S---VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 310 ~~~~~-------~~------~~-----~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
|.+.. .. +. . ++..+...+...|-.+.|+.+++-+.+.+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 33332 11 01 1 33334445567899999999999988866
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.94 E-value=21 Score=29.51 Aligned_cols=277 Identities=11% Similarity=0.081 Sum_probs=161.6
Q ss_pred CCCCChHHHHHHHHHhh-hhHhHHHHHHHHHHHHhhhcCCch---HHHHHHHHHHHhcCChhHHHHHHHHhcc-------
Q 016128 6 SDEPNSVTFISVISACA-SLLYLQFGRQVHGLTLKIEKQSDT---MIGTALVDMYLKCGCLPCAHNVFQELKG------- 74 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 74 (394)
+-+||+..=|.--..-+ +..++++|+.-|...++.....-. .....++..+.+.|++++....+.++..
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 45566655444333322 344788999999988875433222 3445678889999999999988888753
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCC---
Q 016128 75 -SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE--GFKPDPA----TWNSMISGFSQLGMRFEAFKLFEKMQSTGM--- 144 (394)
Q Consensus 75 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--- 144 (394)
.-+..+.|++++....+.+.+....+++.-... .-+ +.. |-..|...|...|++.+..+++.++..+--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 234566788888777777766665555543321 001 211 224577788888888888888888864311
Q ss_pred -CC-------CHHHHHHHHHHhhccchhhHHHHHHHHHHHcC-CCCCHHHHHHHH----HHHHHcCCchHHHH-HHHHhh
Q 016128 145 -VP-------SLKCVTSVLSACADLSALKLGKETHGHVIRAD-LNKDESMATALI----SMYMKCGQPSWARR-FFDQFE 210 (394)
Q Consensus 145 -~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~a~~-~~~~~~ 210 (394)
.. -...|..=|..|....+-.....++++..... .-|.+.....+- ....+.|++++|.. +|+...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 12467777888888887777788888764322 234554444322 23445677877753 444443
Q ss_pred cC-----CCChhh--HHHHHHHHhhcCChhhHHHHHHH--HHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 211 IK-----PDDPAF--WNAMISGYGRNGEYESAVEIFDL--MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 211 ~~-----~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
.- |+.... |-.|.+.+.+.|- .-|+. .....-.|.....+.++.+|.. ++..+-++++..-..
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-- 331 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-- 331 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc--
Confidence 22 222222 4444444444431 00111 1111123455667788888854 677777777766544
Q ss_pred CCCCCHhhHH
Q 016128 282 GLKPKQEHFG 291 (394)
Q Consensus 282 ~~~~~~~~~~ 291 (394)
.+..|+....
T Consensus 332 ~IM~DpFIRe 341 (440)
T KOG1464|consen 332 NIMDDPFIRE 341 (440)
T ss_pred cccccHHHHH
Confidence 5666665544
No 364
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=22 Score=29.62 Aligned_cols=125 Identities=13% Similarity=0.083 Sum_probs=60.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-------HHHHHHHHccCCHHHHHHHHHHHH----hCCCCCCHHHHH
Q 016128 84 MIAGMMLNGRSEKAMELFEGLAHEGFKPDPATW-------NSMISGFSQLGMRFEAFKLFEKMQ----STGMVPSLKCVT 152 (394)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~ 152 (394)
+.+-.++.+++++|+..+.+....|+..|..+. ..+...|...|+....-++..... +-.-+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344455666777777777777766665544333 345566666666554443333221 111111223344
Q ss_pred HHHHHhhcc-chhhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016128 153 SVLSACADL-SALKLGKETHGHVIRADLNK-----DESMATALISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 153 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (394)
+++.-+... ..++....+....++....- ....-..++..+.+.|++.+|..+...
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444322 23333333333333221111 111223466677777887777766544
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.50 E-value=3 Score=32.96 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+.+.-++.+.+.+...+++...++-.+ |... .-..+++.++-.|++++|..-++-+-++.|...
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345556778888899999888776654 6666 777888999999999999998888888887553
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.86 E-value=14 Score=30.72 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=61.4
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC--hhhHHHHHHHHhh--
Q 016128 153 SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDD--PAFWNAMISGYGR-- 228 (394)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~l~~~~~~-- 228 (394)
.=|++++..++|.++....-+-.+..-+..+.+...-|-.|.+.|.+..+.++-......|.| ..-|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347888888999988876655544433445566666677789999998888888776665433 3337777766554
Q ss_pred ---cCChhhHHHHH
Q 016128 229 ---NGEYESAVEIF 239 (394)
Q Consensus 229 ---~~~~~~a~~~~ 239 (394)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 68899998877
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.62 E-value=12 Score=25.59 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG 143 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 143 (394)
.+...|++++|..+.+.+ ..||...|-.|.. .+.|-.+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555555554443 2455555544332 24444444444444554444
No 368
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.45 E-value=2.6 Score=28.24 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=31.3
Q ss_pred CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CCchHHHHHHHHhhcCCcc
Q 016128 316 PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--NPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 369 (394)
|++. .--.+...+...|+++.|++.+-.+++.++. +...-..++..+.-.|.-+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5554 6666667777777777777777777776543 3455566666666655543
No 369
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=23 Score=28.66 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=12.2
Q ss_pred HHhcCChhHHHHHHHHhc
Q 016128 56 YLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~ 73 (394)
+.-.+++++|-++|.+..
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 444567888888877654
No 370
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.14 E-value=45 Score=32.08 Aligned_cols=173 Identities=12% Similarity=-0.003 Sum_probs=81.8
Q ss_pred chHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 199 PSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
..+|...++.......+......-+......++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555555443332333333444444445566666666665553321 1122223334455445566666666665543
Q ss_pred hcC-----------CCC--------CCHh------hHHHHHHHHHhcCcHHHHHHHHHhCCC-CChhhHHHHHHHHHhcC
Q 016128 279 DDF-----------GLK--------PKQE------HFGCMVDLLGRSGRLDEARELIRELPE-PTVSVYHSLLGACWCHL 332 (394)
Q Consensus 279 ~~~-----------~~~--------~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g 332 (394)
... |.+ |... ---.-+..+...|+...|...+..+.. .+......+.....+.|
T Consensus 374 ~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 374 QQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 211 111 0000 001123455666777777777666554 33334455555555677
Q ss_pred CchHHHHHHHHHHhhC---CCCCchHHHHHHHHhhcCCcccHH
Q 016128 333 NSDLGEEMAMKLQEME---PENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
.++.++.........+ -.-|..|...+..+.+.-.++.++
T Consensus 454 ~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 454 WWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred CHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 7777766655433311 122334555555555544555544
No 371
>PRK10941 hypothetical protein; Provisional
Probab=82.78 E-value=6.4 Score=32.78 Aligned_cols=68 Identities=13% Similarity=0.000 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
.+.+-.+|.+.++++.|+.+.+.+.. |+.. -+.--.-.|.+.|.+..|..-++..++.-|.+|.+-..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34455678888999999999888876 7766 56666677888999999999999999888887765433
No 372
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.75 E-value=13 Score=25.41 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
..++|..+-+.+... +-. ...+--.-+..+...|++++|..+.+....||...|-.|.. .+.|-......-+.++.
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356677776666543 211 22222223456778899999999888888788888877653 35566565555555554
Q ss_pred hhC
Q 016128 346 EME 348 (394)
Q Consensus 346 ~~~ 348 (394)
..+
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 444
No 373
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.72 E-value=27 Score=29.16 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=111.1
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHH-------HHHHHHHHhcCChhHHHHHHHHhcc-------CCChhHH
Q 016128 16 SVISACASLLYLQFGRQVHGLTLKIEKQSDTMIG-------TALVDMYLKCGCLPCAHNVFQELKG-------SRNILTW 81 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~ 81 (394)
-+.+...+.+++++|...+..++..|...+..+. .-+...|.+.|+...-.++.....+ +..+...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 4556677889999999999999999877665544 4577888888887766665544332 3445556
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHccCCHHHHHHHHHHH----HhCCCCCCHHHH
Q 016128 82 NTMIAGMMLN-GRSEKAMELFEGLAHEGFKPDPAT-----WNSMISGFSQLGMRFEAFKLFEKM----QSTGMVPSLKCV 151 (394)
Q Consensus 82 ~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~-----~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~ 151 (394)
.+|+.-+-.. ..++..+.+.....+...+-.... =..++..+.+.|.+.+|+.+...+ .+..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 6666665543 456666666666554322212111 134677888999999998876544 444445554443
Q ss_pred HHH-HHHhhccchhhHHHHHHHHHHH----cCCCCCHHHHHHHHHHH--HHcCCchHHHHHHHHh
Q 016128 152 TSV-LSACADLSALKLGKETHGHVIR----ADLNKDESMATALISMY--MKCGQPSWARRFFDQF 209 (394)
Q Consensus 152 ~~l-~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~ 209 (394)
..+ -.+|....+..++..-+..... .-.+|....---|+++- |...++..|..+|-+.
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea 232 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEA 232 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHH
Confidence 322 2344444444444443333321 11233333323333332 3334566666666543
No 374
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=82.38 E-value=51 Score=32.16 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHH-HHHHhc---C-CchHHHHHH---HHHHhhCCCCC-----chH
Q 016128 291 GCMVDLLGRSGRLDEARELIRELPEPTVS--VYHSLL-GACWCH---L-NSDLGEEMA---MKLQEMEPENP-----TPF 355 (394)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~-~~~~~~---g-~~~~a~~~~---~~~~~~~~~~~-----~~~ 355 (394)
....+-+-..|++++|..++....++|.+ +.|.++ .+.... + +.++-..+. ..+....|..+ .++
T Consensus 626 ~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~ 705 (835)
T KOG2168|consen 626 LEVASEADEDGLFEDAILLYHLAGDYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTL 705 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHH
Confidence 34445566789999999999998887776 555554 232221 1 222222222 23333333322 234
Q ss_pred HHHHHH-----HhhcCCcccHHHHHHHhh
Q 016128 356 VILSNI-----YAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 356 ~~l~~~-----~~~~g~~~~a~~~~~~m~ 379 (394)
..|... ....|+|++|+++++...
T Consensus 706 ~lLl~~~~~f~~y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 706 SLLLDLVSFFDLYHNGEWEEALSILEHLD 734 (835)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444433 335688888888887664
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.25 E-value=5.6 Score=25.66 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=7.2
Q ss_pred HHHHHHHHhcCcHHHHH
Q 016128 291 GCMVDLLGRSGRLDEAR 307 (394)
Q Consensus 291 ~~l~~~~~~~g~~~~a~ 307 (394)
..++.+|...|++.+++
T Consensus 47 G~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 376
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.55 E-value=1.1 Score=39.55 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=74.7
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH-HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC-MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
-+..+...+.++.|..++.++.+ +.|+...|-. =..++.+.+++..|+.=+...++ |... .|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677889999999999884 4676554433 33678899999999888888877 4444 6666677888888
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
.+.+|...|+......|+++.+...+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999999887665544
No 377
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.54 E-value=19 Score=26.65 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 112 DPATWNSMISGFSQLGM-RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
+...|+.++.+..+..- ---+..+|.-|.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 33444555544443333 223344445554444455555555555554443
No 378
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=81.35 E-value=10 Score=23.49 Aligned_cols=52 Identities=8% Similarity=-0.218 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhc
Q 016128 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC 59 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 59 (394)
+.|+...++.++..+++..-++.++..+..+.+.| ..+..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999988 46677777777766653
No 379
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.11 E-value=55 Score=31.62 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=43.7
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCC---chHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQS---DTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGR 93 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 93 (394)
+.-+.+.+.+++|....+.... ..| -......+|..+.-.|++++|-...-.|. ..+..-|.-.+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-GNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-cchHHHHHHHHHHhccccc
Confidence 3445667788888877665432 233 34567778888888888888877766655 3333344444444444333
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.92 E-value=9.5 Score=27.69 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCHhhHHHHHHHHHhcCcH---HHHHHHHHhCCC---CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 285 PKQEHFGCMVDLLGRSGRL---DEARELIRELPE---PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~---~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
++..+--.+..++.+..+. .+-+.+++++.+ |... ..-.|.-++.+.++++.+.++.+.+.+.+|+|.++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444444555544433 334445555442 2222 33344456667777777777777777777766544
No 381
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=80.91 E-value=33 Score=28.97 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=8.2
Q ss_pred CCCChHHHHHHHHHh
Q 016128 7 DEPNSVTFISVISAC 21 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~ 21 (394)
+.|....++.+|+.|
T Consensus 107 i~~~~qvf~KliRRy 121 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRY 121 (412)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566666654
No 382
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.79 E-value=32 Score=28.67 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 284 KPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.-++.....+...|.+.|++.+|...|-....++...+..++..+...|...++--+ ....+--|.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlf--------------i~RaVL~yL 152 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLF--------------IARAVLQYL 152 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHH--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHH--------------HHHHHHHHH
Confidence 346788899999999999999999888665544333333344333334443333111 222333455
Q ss_pred hcCCcccHHHHHHHhhhc
Q 016128 364 GLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (394)
-.|+...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 667777777777666543
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.48 E-value=3.6 Score=20.64 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
|+.+.+..+|+++....|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456778888888888778777777666543
No 384
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=80.45 E-value=16 Score=25.51 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77888888888888888888887766
No 385
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.33 E-value=38 Score=29.29 Aligned_cols=116 Identities=11% Similarity=0.040 Sum_probs=81.7
Q ss_pred HHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh---cCCchHHHHH
Q 016128 267 VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC---HLNSDLGEEM 340 (394)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~---~g~~~~a~~~ 340 (394)
.+.-+.+++++.+. .+.+......+++.+.+..+.++..+-++++.. |+.. .|...+..... ...++.....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34556777887764 335667778888899999999999999998887 6655 88888876654 3456777777
Q ss_pred HHHHHhhC---C--------CCCc-------hHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 341 AMKLQEME---P--------ENPT-------PFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 341 ~~~~~~~~---~--------~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
|.+..+.- . +.+. .+..+...+.++|..+.|..+++.+.+.++-
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 77666521 1 1111 2333444466889999999999999998763
No 386
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.22 E-value=23 Score=28.68 Aligned_cols=85 Identities=14% Similarity=0.057 Sum_probs=56.1
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhh-HHHHHHHHHhcCc
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPNSA-SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH-FGCMVDLLGRSGR 302 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 302 (394)
.|.....++.|+..|.+.... .|+.. -|+.=+-.+.+..+++.+..--...+ .+.|+... ...+...+.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhcc
Confidence 345566788888877777664 56663 34555566677888888777666655 44565443 3344556667778
Q ss_pred HHHHHHHHHhCC
Q 016128 303 LDEARELIRELP 314 (394)
Q Consensus 303 ~~~a~~~~~~~~ 314 (394)
+++|+..+++..
T Consensus 94 ~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 94 YDEAIKVLQRAY 105 (284)
T ss_pred ccHHHHHHHHHH
Confidence 888888887763
No 387
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.21 E-value=17 Score=29.65 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHh-----hCCCCCchHHHHH----HHHhhcCCcccHHHHHHHhhhcc
Q 016128 335 DLGEEMAMKLQE-----MEPENPTPFVILS----NIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 335 ~~a~~~~~~~~~-----~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.|.+.|+.+.+ +.|.+|.-+...+ ..|--.|+.++|.++.+...+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 455566665554 2344443322222 23445778888777776665543
No 388
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.56 E-value=8.6 Score=35.39 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=83.7
Q ss_pred CCCHhhHHHHHHHHHcc--CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--hhhH
Q 016128 248 KPNSASFVAVLSACGHA--GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT--VSVY 321 (394)
Q Consensus 248 ~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~~~ 321 (394)
.|+..+..+++.-.... ...+-+..++..|.+ .+.|--.+.|...-.+...|+...|...+..... |. .+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 35555555544433221 122334444444433 3334333334333334456888888887776654 32 2366
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 322 HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 322 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..|.....+.|-...|-.++.+...+.-..|-++..+++++....+++.|++.|+...+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 6677777777888888888888888777777888888888888888888888888877643
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.54 E-value=20 Score=27.66 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=14.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 016128 85 IAGMMLNGRSEKAMELFEGLAH 106 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~ 106 (394)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4556677777777777776665
No 390
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.08 E-value=14 Score=26.62 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhC--CCCCchHHHHHHHHhhcCCcccHHHHHHH
Q 016128 336 LGEEMAMKLQEME--PENPTPFVILSNIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 336 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 377 (394)
.+.++|+.+...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888887744 56667788888888999999999988875
No 391
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.94 E-value=69 Score=30.94 Aligned_cols=173 Identities=14% Similarity=0.193 Sum_probs=99.6
Q ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh---------HHHHHHHHhhcCChhhH
Q 016128 168 KETHGHVIRADLNK---DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF---------WNAMISGYGRNGEYESA 235 (394)
Q Consensus 168 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~~~a 235 (394)
..++.+|...--.| ...+...++-.|....+++...++.+.+...|..... |.-.++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 34555665543233 4566677788888888999999998888765422111 33333333456888888
Q ss_pred HHHHHHHHHcC--CCCCHhh-----HHHH--HHHHHccCCHHHHHHHHHHchhcCCCCCCHhh---HHHHHHH-------
Q 016128 236 VEIFDLMQQEK--VKPNSAS-----FVAV--LSACGHAGHVDKALQIFTMMDDDFGLKPKQEH---FGCMVDL------- 296 (394)
Q Consensus 236 ~~~~~~~~~~~--~~~~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~------- 296 (394)
+...-.+.+.. +.||... |.-+ -..|...+..+.|..+|++.. .+.|.... +..|+.+
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccc
Confidence 88887776653 4555432 2211 123445667788888888776 44565433 2222222
Q ss_pred --------------HHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 297 --------------LGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 297 --------------~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+.+.|..++..++|+ + ...+.+-.-.+++.+|++..+.+.++.|+.-
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWd------V---~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWD------V---ATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHh------H---HHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 122222222222221 1 1123334456889999999999999888653
No 392
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.49 E-value=8 Score=35.56 Aligned_cols=99 Identities=15% Similarity=0.017 Sum_probs=73.0
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 338 (394)
...|+...|.+.+...... .-.......-.|.....+.|....|..++.+... ....++-.+.+++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~-~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL-APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhcc-ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4568888888888777643 1111223444566677777888888888777655 22237888889999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHH
Q 016128 339 EMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
+.|+.+.+..|.++.+-..|...
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999887776554
No 393
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.06 E-value=43 Score=28.15 Aligned_cols=71 Identities=8% Similarity=0.138 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch----hcCCCCCCHhhH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD----DDFGLKPKQEHF 290 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 290 (394)
++.....|...|.+.+|.++-++....+ +.+...+-.+++.+...|+--.+.+.++.+. ..+|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4455567778888888888888877764 3466777788888888888666665555443 233665554443
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.59 E-value=73 Score=30.55 Aligned_cols=180 Identities=10% Similarity=0.011 Sum_probs=104.1
Q ss_pred HHHHHHHHHHh-hhcCCc--hHHHHHHHHHHH-hcCChhHHHHHHHHhcc---CCChh-----HHHHHHHHHHhcCCHHH
Q 016128 29 FGRQVHGLTLK-IEKQSD--TMIGTALVDMYL-KCGCLPCAHNVFQELKG---SRNIL-----TWNTMIAGMMLNGRSEK 96 (394)
Q Consensus 29 ~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~---~~~~~-----~~~~ll~~~~~~~~~~~ 96 (394)
.|++.++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++... +++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 35666666663 334443 335556666666 56899999999997643 22221 1234566677766666
Q ss_pred HHHHHHHHHhc--C--CCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhh--ccchhhH
Q 016128 97 AMELFEGLAHE--G--FKPDPATWNSM-ISGFSQLGMRFEAFKLFEKMQSTG---MVPSLKCVTSVLSACA--DLSALKL 166 (394)
Q Consensus 97 a~~~~~~m~~~--g--~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~--~~~~~~~ 166 (394)
|...+++..+. + ..+-...|..+ +..+...+++..|++.++.+...- ..|....+..++.+.. ..+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888887664 1 22223333333 333334479999999998876432 3444555555655543 4455666
Q ss_pred HHHHHHHHHHcCC---------CCCHHHHHHHHHHH--HHcCCchHHHHHHHHh
Q 016128 167 GKETHGHVIRADL---------NKDESMATALISMY--MKCGQPSWARRFFDQF 209 (394)
Q Consensus 167 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~ 209 (394)
+.+.++.+..... .|...++..+++.+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666533221 23456666666554 4566766776666554
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.59 E-value=8.7 Score=24.82 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=19.5
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHH
Q 016128 228 RNGEYESAVEIFDLMQQEKVKPNS--ASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 272 (394)
...+.++|+..|+...+.-..|.. .++..++.+++..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554443222111 234444445555555544444
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.24 E-value=10 Score=29.81 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=13.1
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 284 KPKQEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
.|++.+|..++.++...|+.++|.++.+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 397
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.07 E-value=10 Score=32.18 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=39.5
Q ss_pred HHHHhcCcHHHHHHHHHhCCC-----CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 295 DLLGRSGRLDEARELIRELPE-----PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
+-|.+..++..|...|.+.+. |+.- .|+.-..+-.-.|++..|+.-..+++..+|.+..+|..-+.++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 334445555555555544443 2222 444444444445555555555555555556555555555555555555
Q ss_pred cccHH
Q 016128 368 WEDVG 372 (394)
Q Consensus 368 ~~~a~ 372 (394)
+++|.
T Consensus 169 ~~~a~ 173 (390)
T KOG0551|consen 169 FAEAV 173 (390)
T ss_pred HHHHH
Confidence 44333
No 398
>PRK12798 chemotaxis protein; Reviewed
Probab=76.04 E-value=57 Score=29.03 Aligned_cols=185 Identities=11% Similarity=0.018 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh-hccchhhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC-ADLSALKLGKETHGHVIRA--DLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
.|+..++.+.+..+.....++....+-.|+.+- ....+...|..+|+...-. |.-........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 688888888888887766677777777776664 4556888888888876532 2112223334445556778888876
Q ss_pred HHHHH----HhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHH
Q 016128 203 RRFFD----QFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN--SASFVAVLSACGHAGHVDKALQIFTM 276 (394)
Q Consensus 203 ~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 276 (394)
..+-. +...++--...+..+..++.+.++-..-.. +..+... +.|+ ...|..+.+.-...|+.+.|...-.+
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSF-MDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 65544 444444444445555555555553332222 3333332 2232 35788888888888998888777666
Q ss_pred chhcCCCCCCHhhHHHHHHH-----HHhcCcHHHHHHHHHhCCC
Q 016128 277 MDDDFGLKPKQEHFGCMVDL-----LGRSGRLDEARELIRELPE 315 (394)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~ 315 (394)
...- .-..+ .-...+.. -.-..+++++.+.+..+..
T Consensus 283 A~~L-~~~~~--~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKL-ADPDS--ADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHh-ccCCC--cchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 6543 11111 11111222 2345678888888888875
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.76 E-value=7.4 Score=23.86 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 016128 84 MIAGMMLNGRSEKAMELFEGLA 105 (394)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~m~ 105 (394)
+|.++...|++++|.+.++.+.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444444444433
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.70 E-value=4.1 Score=24.98 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=11.3
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHH
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
-.++.++.+.|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455555555555555554443
No 401
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.68 E-value=27 Score=32.79 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=62.9
Q ss_pred HHhcCcHHHHHHHHHhCCC-------CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 297 LGRSGRLDEARELIRELPE-------PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~-------~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
..+..++..+.+.|..-.. .++. ....+.-+|....+.+.|.++++++.+.+|.++-+-.....+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3456677777777764432 1112 566677778888899999999999999999888888888888888888
Q ss_pred cccHHHHHHHhhh
Q 016128 368 WEDVGRIRQMIND 380 (394)
Q Consensus 368 ~~~a~~~~~~m~~ 380 (394)
-++|+.+......
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 8888888766554
No 402
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.29 E-value=80 Score=30.33 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL 126 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 126 (394)
.+|-.|.+.|++++|.++....... .......+-..+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3566777888888888888544433 333445566666666554
No 403
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.24 E-value=28 Score=25.01 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 97 AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 97 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
..+-++.+..-++.|++.....-++++.+.+++..|.++|+-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555566666666666677777777777777776666543
No 404
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=75.05 E-value=54 Score=28.22 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+......++.+++...+.+...++++....
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444455555555555444444444444
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.95 E-value=4.6 Score=35.98 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=69.8
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh-HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHh
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKVKPNSAS-FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGR 299 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 299 (394)
-+..+...+.++.|+.++.+..+. .|+-.. |..=..++.+.+++..|..=+..+.+. .|+. ..|-.=..++.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMA 84 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHh
Confidence 345567788999999999999986 565544 444447888899999888777776653 3331 222222345556
Q ss_pred cCcHHHHHHHHHhCCC--CChhhHHHHHHHHH
Q 016128 300 SGRLDEARELIRELPE--PTVSVYHSLLGACW 329 (394)
Q Consensus 300 ~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~ 329 (394)
.+.+.+|...|+.... |+..-....+.-|-
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 6778888888887766 88877666666653
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.76 E-value=14 Score=21.25 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=17.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
.+.|-.+++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555555566665555555555555444
No 407
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.18 E-value=88 Score=30.33 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHHHHhcCChhHHHHHHHHhccC-C---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016128 53 VDMYLKCGCLPCAHNVFQELKGS-R---NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 128 (394)
++-+.+.+.+++|+.+-+..... + -...+..+|..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 55677889999999998887652 2 2345778889999999999999998888876 66666666666666665
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHH--------------H---HHcCCCCCHHHHHHHHH
Q 016128 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGH--------------V---IRADLNKDESMATALIS 191 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------------~---~~~~~~~~~~~~~~l~~ 191 (394)
......++ .......+...|..++..+.. .+...-.++... . .+.. .-+...-..|+.
T Consensus 439 l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVLAH 513 (846)
T ss_pred cchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHHHH
Confidence 55433221 211112344556666655554 222222111110 0 0011 112334455888
Q ss_pred HHHHcCCchHHHHHHHHhhc
Q 016128 192 MYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~ 211 (394)
.|...+++..|...+-.+.+
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 88888888888888776654
No 408
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.74 E-value=10 Score=30.35 Aligned_cols=58 Identities=22% Similarity=0.219 Sum_probs=43.4
Q ss_pred HHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 296 LLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
...+.++.+.|.+++.+..+ |... .|-.+...--+.|+.+.|.+.|++..+++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567788888888888877 4444 7877877778888888888888888888776543
No 409
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.70 E-value=87 Score=30.05 Aligned_cols=363 Identities=10% Similarity=0.078 Sum_probs=173.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHhhhcC----CchHHHHHH-HHHHHhcCChhHHHHHHHHhcc------CCChhHHHHH
Q 016128 16 SVISACASLLYLQFGRQVHGLTLKIEKQ----SDTMIGTAL-VDMYLKCGCLPCAHNVFQELKG------SRNILTWNTM 84 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l 84 (394)
.+++.+.+.+... |....+..++.--. +-...+..+ +..+...++...|.+.++.+.. .+....+-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3445555554444 88888876653322 222233333 3333334799999999987754 2233344444
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHh-------CC-
Q 016128 85 IAGMM--LNGRSEKAMELFEGLAHEGF---------KPDPATWNSMISGF--SQLGMRFEAFKLFEKMQS-------TG- 143 (394)
Q Consensus 85 l~~~~--~~~~~~~a~~~~~~m~~~g~---------~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~-------~~- 143 (394)
+.+.. +.+..+++.+.++.+..... .|-..+|..+++.+ ...|+++.+...++++.+ ..
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~ 263 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPS 263 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCcc
Confidence 44443 45666777777777744221 33566676666654 456776666666555432 10
Q ss_pred ---------CC-------------CCH---------HHHHHHHHH--hhccchhhHHHHHH-------HHHH-HcCCCCC
Q 016128 144 ---------MV-------------PSL---------KCVTSVLSA--CADLSALKLGKETH-------GHVI-RADLNKD 182 (394)
Q Consensus 144 ---------~~-------------~~~---------~~~~~l~~~--~~~~~~~~~a~~~~-------~~~~-~~~~~~~ 182 (394)
++ |.. ..+..++.+ .+..+..+++.+++ +... +....+.
T Consensus 264 w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~ 343 (608)
T PF10345_consen 264 WPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS 343 (608)
T ss_pred CCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 00 000 111112222 12233333444444 4443 1111111
Q ss_pred --H------HHHHHH---------HHHHHHcCCchHHHHHHHHhhcC----CC------ChhhHHHHHHHHhhcCChhhH
Q 016128 183 --E------SMATAL---------ISMYMKCGQPSWARRFFDQFEIK----PD------DPAFWNAMISGYGRNGEYESA 235 (394)
Q Consensus 183 --~------~~~~~l---------~~~~~~~g~~~~a~~~~~~~~~~----~~------~~~~~~~l~~~~~~~~~~~~a 235 (394)
. ..+... +-..+-.+++..|...++.+... |+ .+..+....-.+...|+.+.|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 1 111111 11234467888888888877643 11 112222223334567999999
Q ss_pred HHHHH--------HHHHcCCCCCHhhHHHH--HHHHH--ccCCHHH--HHHHHHHchhcCCCCCC--HhhHHH-HHHHHH
Q 016128 236 VEIFD--------LMQQEKVKPNSASFVAV--LSACG--HAGHVDK--ALQIFTMMDDDFGLKPK--QEHFGC-MVDLLG 298 (394)
Q Consensus 236 ~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~--~~~~~~~--a~~~~~~~~~~~~~~~~--~~~~~~-l~~~~~ 298 (394)
...|. .....+...+...+..+ +-.+. .....++ ..++++.+.....-.|+ ..+... ++.++.
T Consensus 424 ~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~ 503 (608)
T PF10345_consen 424 LYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYN 503 (608)
T ss_pred HHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHh
Confidence 99997 44444444444443332 11122 2222333 67777776543222332 222233 333332
Q ss_pred hc---------CcHHHHHHHH-HhCCCCChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhC---CCCC-chHH-----H
Q 016128 299 RS---------GRLDEARELI-RELPEPTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEME---PENP-TPFV-----I 357 (394)
Q Consensus 299 ~~---------g~~~~a~~~~-~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~-----~ 357 (394)
.. ..+.++++.. +.....-.. +++.+...+. .|+..+............ |+.. ..|. .
T Consensus 504 ~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~ 582 (608)
T PF10345_consen 504 TFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGM 582 (608)
T ss_pred hCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 11 1223344444 222222222 2333333333 677777766666555433 2223 3342 3
Q ss_pred HHHHHhhcCCcccHHHHHHHhhh
Q 016128 358 LSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 358 l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+...+...|+.++|.....+...
T Consensus 583 l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 583 LADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 33446778999999888876643
No 410
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=73.64 E-value=8.6 Score=32.32 Aligned_cols=80 Identities=10% Similarity=0.078 Sum_probs=56.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHH-HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 282 GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHS-LLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
.+..|+..|...+..-.+.|.+.+...+|.+... |..+ .|-. ...-+...++++.+..+|.+..+++|.+|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4455667777777666677777777777777765 5555 5543 2334556788888888898888888888888766
Q ss_pred HHHH
Q 016128 358 LSNI 361 (394)
Q Consensus 358 l~~~ 361 (394)
....
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 5543
No 411
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=72.88 E-value=61 Score=27.90 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHH
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHE---GFKPDPATWN--SMISGFSQLGMRFEAFKLFEKMQS-----TGMVPSLK 149 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~ 149 (394)
+...-+.++.++|+++++++.+. .-.|+...|. ...+++...|+..++.+++++..+ .+++|++.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 33344445666676666666553 2234544443 344555566677777666666554 35555443
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.74 E-value=11 Score=25.41 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=32.7
Q ss_pred HhcCCchHHHHHHHHHHhhCCC----C-----CchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPE----N-----PTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.+.|++..|.+.+.+..+.... . ..+...++..+...|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777776666665553311 1 12334456667778888888888888765
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.29 E-value=32 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 567777788888888888888887776
No 414
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=70.52 E-value=11 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATW 116 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 116 (394)
.|+.-|....+.||+++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3667777777777777777777777777765333333
No 415
>PF15469 Sec5: Exocyst complex component Sec5
Probab=70.04 E-value=33 Score=26.65 Aligned_cols=29 Identities=7% Similarity=-0.080 Sum_probs=19.1
Q ss_pred CCcccHHHHHHHhhhccccccCCCCCCCC
Q 016128 366 GRWEDVGRIRQMINDRQLTKLPGISAGIT 394 (394)
Q Consensus 366 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 394 (394)
...++..++.+.+.+.+...+|.+.|+.+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~~ 181 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLES 181 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHc
Confidence 34455666666666667777777777653
No 416
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=69.23 E-value=58 Score=30.90 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=55.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccC-----CChhHHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCCHHHHHHH
Q 016128 51 ALVDMYLKCGCLPCAHNVFQELKGS-----RNILTWNTMIAGMMLNGRSE------KAMELFEGLAHEGFKPDPATWNSM 119 (394)
Q Consensus 51 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~l 119 (394)
+|+.+|...|++-.+.++++..... .=...||..|+...+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999999998887642 22356888888888888764 3444444433 34477788877
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~ 140 (394)
+.+-..--+-.-.+-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554322222333444443
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.21 E-value=31 Score=27.08 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=31.2
Q ss_pred hcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 90 LNGRSEKAMELFEGLAHE-GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
...+.+......+...+. ...|++.+|..++.++...|+.++|.++..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444333333333221 23677777777777777777777777777776653
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.75 E-value=75 Score=27.26 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhc---CCCCCCHhhHHHHHHHH-H----hcCcHHHHHHHHHhCCC---CChh-
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDD---FGLKPKQEHFGCMVDLL-G----RSGRLDEARELIRELPE---PTVS- 319 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~-~----~~g~~~~a~~~~~~~~~---~~~~- 319 (394)
..+......|++.|+.+.|.+.++...++ .|.+.|+..+..-+..+ . -....++|..++++--. .|..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45556667788888888888877765432 15556655444322222 1 22345666666666654 3333
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
+|..+- |....++.+|..+|-......
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 666554 344567777877776665543
No 419
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.73 E-value=11 Score=31.54 Aligned_cols=41 Identities=15% Similarity=0.386 Sum_probs=32.2
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 217 AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
..|+.-|....+.||+++|+.++++.++.|+.--..+|..-
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34888899999999999999999999998876555555433
No 420
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=67.95 E-value=93 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 016128 84 MIAGMMLNGRSEKAMELFEGLA 105 (394)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~m~ 105 (394)
+..-++..|.|+.|.+++++-.
T Consensus 124 laadhvAAGsFetAm~LLnrQi 145 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQI 145 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC
T ss_pred cHHHHHHhCCHHHHHHHHHHHh
Confidence 4566778888888888887643
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.41 E-value=44 Score=24.10 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 016128 96 KAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEK 138 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 138 (394)
.+.++|+.|..+|+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888887765543 55667777778888888888887764
No 422
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.35 E-value=72 Score=26.52 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHhhHHHHHHHH-----HccCCHHHHHHHHHHc
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSASFVAVLSAC-----GHAGHVDKALQIFTMM 277 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~ 277 (394)
|..-|..|...++-.+...+|++...-. ..|.+.... +|+-| .+.|++++|-.-|-+.
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 5555566666666666666666554322 233443332 23333 3456666665433333
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.88 E-value=35 Score=22.67 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHH
Q 016128 30 GRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKA 97 (394)
Q Consensus 30 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 97 (394)
+.++++...+.|+ -+......+-.+-...|+.+.|.+++..++ .....|..++.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~--rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV--QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc--cCCcHHHHHHHHHHHcCchhhh
Confidence 4556666666662 222222333222234567777777777776 3444566666666666655444
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.65 E-value=35 Score=22.65 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=19.9
Q ss_pred HcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhH
Q 016128 195 KCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESA 235 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 235 (394)
..|+.+.|.+++..+. . .+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-r--g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-Q--KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-c--CCcHHHHHHHHHHHcCchhhh
Confidence 3455566666666655 2 333455555555555554433
No 425
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.61 E-value=85 Score=27.09 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=50.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHhhccchhhHHHHHHHHHHH-----cCCCCCH-HH
Q 016128 117 NSMISGFSQLGMRFEAFKLFEKMQST---GMVPSLKCVT--SVLSACADLSALKLGKETHGHVIR-----ADLNKDE-SM 185 (394)
Q Consensus 117 ~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~-~~ 185 (394)
..++...-+.++.++|+++++++.+. .-.|+.+.|. ...+++...||.+++.+++.+..+ .+++++. ..
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444455556778888888877643 2345555553 445556677888888888877766 5565533 23
Q ss_pred HHHHHHHH-HHcCCchHH
Q 016128 186 ATALISMY-MKCGQPSWA 202 (394)
Q Consensus 186 ~~~l~~~~-~~~g~~~~a 202 (394)
|..+-.-| -..|++...
T Consensus 159 fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 44444333 334555443
No 426
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.51 E-value=1.6e+02 Score=30.06 Aligned_cols=122 Identities=13% Similarity=0.061 Sum_probs=49.3
Q ss_pred ChhhHHHHHHHHhhcCChhh-HHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHH
Q 016128 215 DPAFWNAMISGYGRNGEYES-AVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCM 293 (394)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (394)
++..-...+.++...+..+. +...+..+.+ .+|...-...+.++...|..+.+...+..+.++ ++..+-...
T Consensus 755 ~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR~~A 827 (897)
T PRK13800 755 NREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVRQGA 827 (897)
T ss_pred CHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHHHHH
Confidence 44444444444444443322 2233333332 234444445555555555443332333333321 344444445
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 294 VDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
+.++.+.+..+....+...+..|+..+-...+.++.+.+....+...+..
T Consensus 828 a~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~ 877 (897)
T PRK13800 828 ARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTT 877 (897)
T ss_pred HHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 55555554433222223333334444444444444443222334444433
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.48 E-value=96 Score=27.63 Aligned_cols=56 Identities=9% Similarity=-0.034 Sum_probs=36.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhh--ccchhhHHHHHHHHHHHc
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLK--CVTSVLSACA--DLSALKLGKETHGHVIRA 177 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 177 (394)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888876 555444 3444555553 344677788887776654
No 428
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.32 E-value=51 Score=24.46 Aligned_cols=93 Identities=9% Similarity=0.056 Sum_probs=64.5
Q ss_pred HHhcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHhhccch-hhHHHHHHHHHH
Q 016128 104 LAHEGFKPDPA--TWNSMISGFSQLGMRFEAFKLFEKMQSTG-----MVPSLKCVTSVLSACADLSA-LKLGKETHGHVI 175 (394)
Q Consensus 104 m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 175 (394)
|.+.+..++.. ..|.++.-....+++...+.+++.+..-. -..+...|..++.+.++... --.+..+|..+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 44445555543 34667777777778888877777764311 02355678889998877666 455677888888
Q ss_pred HcCCCCCHHHHHHHHHHHHHc
Q 016128 176 RADLNKDESMATALISMYMKC 196 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~ 196 (394)
+.+..+++.-|..++.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 888888999999999887654
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.30 E-value=96 Score=27.57 Aligned_cols=157 Identities=8% Similarity=0.114 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcC---------CCCC
Q 016128 114 ATWNSMISGFSQLGMRFEAFKLFEKMQSTG--MVPSLKCVTSVLSACADLSALKLGKETHGHVIRAD---------LNKD 182 (394)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~ 182 (394)
..+.-+...|...|+++.|++.|.+..+-- .+.....|-.+|..-.-.|+|........+..... +++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456778888899999999999998855421 12233455566666667788877777766665541 2233
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC---------CCChhhHHHHHHHHhhcCChhhHHHH-----HHHHHHcCCC
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK---------PDDPAFWNAMISGYGRNGEYESAVEI-----FDLMQQEKVK 248 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~ 248 (394)
...+..|..... +++..|.+.|-..... |.|..+|. .+.+++.-++-+--+.+ |+...+
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 344444444333 3666666666543322 23333333 23333333332222222 222222
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
..+.....+...| .+++....++++++..
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 2333344444444 3578888888888765
No 430
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=65.81 E-value=6.5 Score=32.92 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=26.6
Q ss_pred hcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 299 RSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
+.|+.++|..+|+.... |+.. ....+....-..++.-+|-++|-++..+.|.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 44555555555554443 3333 4444444444444455555555555555554443
No 431
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=64.94 E-value=31 Score=24.50 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCcHHHHH-------HHHHhCCC--CChh-hHHHHH----HHHHhcCCchHHHHHHHHHHh
Q 016128 289 HFGCMVDLLGRSGRLDEAR-------ELIRELPE--PTVS-VYHSLL----GACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~-------~~~~~~~~--~~~~-~~~~l~----~~~~~~g~~~~a~~~~~~~~~ 346 (394)
++..|..++...|++++++ .+|++--+ .|.- .|-..+ .++...|+.++|+..|+..-+
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4455566667777766543 34443333 2222 343332 345556777777777776654
No 432
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.79 E-value=10 Score=30.39 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=50.9
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
...+.++.+.+.+++.++.+.-|.....|..++....+.|+++.|.+.+++..+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45678899999999999999999999999999999999999999999999887654
No 433
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.75 E-value=42 Score=26.96 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=20.6
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.....++....+.|++++|.+.|.++...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 345556667777777777777777776643
No 434
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.44 E-value=1.7e+02 Score=29.76 Aligned_cols=316 Identities=11% Similarity=0.004 Sum_probs=165.2
Q ss_pred HHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHH----HHHHh---cC---ChhHHHHHHHHhccCCCh-hHHHHHHHH
Q 016128 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALV----DMYLK---CG---CLPCAHNVFQELKGSRNI-LTWNTMIAG 87 (394)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g---~~~~A~~~~~~~~~~~~~-~~~~~ll~~ 87 (394)
.++.....+++|...|+++..+- |.....|.++. ..+-+ .| .+++|+.-|+.+...+.+ --|-.-.-.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 45556678888888888877543 44444443332 22222 23 588999999998864433 336555666
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCC--------------------CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCC
Q 016128 88 MMLNGRSEKAMELFEGLAHE-GFKP--------------------DPATWNSMISGFSQ---LGMRFEAFKLFEKMQSTG 143 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~-g~~p--------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~ 143 (394)
|-+.|++++-.+-+....++ .-.| ...+|.-++-+... .-...+-.++|+.+..+-
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHKQ 641 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhc
Confidence 77889988877777766554 2333 12222222222221 112233345555554331
Q ss_pred -------CCCCHHH-----HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhc
Q 016128 144 -------MVPSLKC-----VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 144 -------~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
+.+++.+ +..++..+ .|..----++++...+. ++-.+.....-+.+..|.++-+.+..+.+..
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (932)
T PRK13184 642 QATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAE 716 (932)
T ss_pred cCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1222221 22222222 12222333445554443 2344445555566788998888877776653
Q ss_pred C------CCCh--------hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHHHHH
Q 016128 212 K------PDDP--------AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 212 ~------~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
. +.+. ..|-.-+.++.....++++.+.+... .|.. ..+..++.-+...++.+....+.+
T Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (932)
T PRK13184 717 VSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQ 791 (932)
T ss_pred HhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 2 1111 11222244455555666666544332 2222 233334444444555555555555
Q ss_pred HchhcCCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChh--hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 276 MMDDDFGLKPK--QEHFGCMVDLLGRSGRLDEARELIRELPE---PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 276 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
.+.+. ..+.. ......-|.+|.-..++++|-++++.... .++. .+.....-++-.++.+.|...|....+
T Consensus 792 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 792 LIYDY-VSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHhc-cCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 55432 22221 12334557788889999999999987775 2233 333333333456777777777777663
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.68 E-value=36 Score=30.32 Aligned_cols=55 Identities=9% Similarity=-0.023 Sum_probs=30.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC---------CChh--hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE---------PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
.|++.++-.||+..|+++++.+.- |... ++-.+.-+|.-.+++.+|++.|..+.-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777665542 1111 444455555556666666666655443
No 436
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.68 E-value=90 Score=26.02 Aligned_cols=27 Identities=26% Similarity=0.161 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (394)
++.....+...|.+.|++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 667777788888888888877766643
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=62.14 E-value=83 Score=25.41 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=10.1
Q ss_pred HHHHhhcCChhhHHHHHHHHH
Q 016128 223 ISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~ 243 (394)
|......|+.+.|++....+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 333444555555555554443
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.74 E-value=1.2e+02 Score=27.06 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHHHcCCchHHHHHHHHhhcC-CCChh--hHHHHHHHHhh--cCChhhHHHHHHHHHHc
Q 016128 192 MYMKCGQPSWARRFFDQFEIK-PDDPA--FWNAMISGYGR--NGEYESAVEIFDLMQQE 245 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~-~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 245 (394)
.+.+.+++..|.++|+.+... +.+.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777776664 33332 34444455443 45566777777766554
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.52 E-value=65 Score=23.96 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=33.2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016128 137 EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQ 198 (394)
Q Consensus 137 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (394)
..+.+.|+.++.. -..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444555554433 234455555555556677777777766655555444445555555553
No 440
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.28 E-value=43 Score=24.89 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
++.+.+.+.|++++..= ..++..+...++.-.|.++|+++.+.+...+..|.-..+..+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455666777655433 3456666666666778888888887766655555544444444443
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.27 E-value=1.1e+02 Score=26.40 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 016128 83 TMIAGMMLNGRSEKAMELFEG 103 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~ 103 (394)
.....|++-|+-+.|++.+.+
T Consensus 109 ~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 334444555555554444433
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.78 E-value=69 Score=26.41 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHhhccchhhHHHHHHHHH
Q 016128 117 NSMISGFSQLGMRFEAFKLFEKMQS----TG-MVPSLKCVTSVLSACADLSALKLGKETHGHV 174 (394)
Q Consensus 117 ~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 174 (394)
-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456667777777777777777642 22 2344455666667777777777666554443
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.99 E-value=33 Score=28.28 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=11.2
Q ss_pred HHHHHHccCCHHHHHHHHHHch
Q 016128 257 VLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
+..-|...|++++|.++|+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555543
No 444
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.80 E-value=52 Score=22.02 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=17.6
Q ss_pred hcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 210 EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
...|.|....-.+...+...|++++|++.+-.+.+.
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555555444
No 445
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=58.43 E-value=1e+02 Score=25.21 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 016128 110 KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS 147 (394)
Q Consensus 110 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 147 (394)
.|.+.....++..+. .+++++|.+++.++-+.|..|.
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 355655555555544 3467777777777777776654
No 446
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.00 E-value=34 Score=19.61 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=17.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL 155 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 155 (394)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555666666666666555555555444
No 447
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.95 E-value=80 Score=30.08 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=54.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHhhh--cCCchHHHHHHHHHHHhcCChh------HHHHHHHHhccCCChhHHHHHHHH
Q 016128 16 SVISACASLLYLQFGRQVHGLTLKIE--KQSDTMIGTALVDMYLKCGCLP------CAHNVFQELKGSRNILTWNTMIAG 87 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~ll~~ 87 (394)
+|+.+|...|++..+.++++...... -..-...+|..++-..+.|.++ .|.++++...-..|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 89999999999999999999888654 2223557888899999998764 445555554445677777766655
Q ss_pred HH
Q 016128 88 MM 89 (394)
Q Consensus 88 ~~ 89 (394)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.66 E-value=1.2e+02 Score=25.59 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEK 138 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 138 (394)
..++..+...|++-++.+.+.++..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34444455555555555555444443
No 449
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.14 E-value=28 Score=32.93 Aligned_cols=23 Identities=0% Similarity=0.047 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHcCCCCCHH
Q 016128 162 SALKLGKETHGHVIRADLNKDES 184 (394)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~~~~~~ 184 (394)
+++.+|.+.+-.+.+.+..|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHH
Confidence 45555555555555554444433
No 450
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.88 E-value=60 Score=21.82 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=27.4
Q ss_pred HhcCCHHHHHHHHHHHH----hcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 89 MLNGRSEKAMELFEGLA----HEGFKPD----PATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~----~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
.+.|++..|.+.+.+.. ..+..+. ..+.-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667766655444433 2222221 11222344455666777777777777653
No 451
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.50 E-value=1.5e+02 Score=26.24 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-------CCC------------------CCCHHHHHHH---HHHhhccch
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQS-------TGM------------------VPSLKCVTSV---LSACADLSA 163 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~------------------~~~~~~~~~l---~~~~~~~~~ 163 (394)
.+.++-.+...+..+|+.+.|.+++++..- ..+ .-|...|.++ +..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 455566666666777776666665555320 011 1133334333 455677788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCchHHHHHHHHhhc
Q 016128 164 LKLGKETHGHVIRADLNKDESMATALISMYM-KCGQPSWARRFFDQFEI 211 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 211 (394)
+..|.++.+-+...+..-|+......|+.|+ +.++++--+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 8888888888887776656666666666654 45666666666666443
No 452
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.61 E-value=1.4e+02 Score=25.54 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=9.4
Q ss_pred HHHHHHHHhhccchhhH
Q 016128 150 CVTSVLSACADLSALKL 166 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~ 166 (394)
+|..|+.+++..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45555666665555443
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=54.28 E-value=1.4e+02 Score=25.61 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHH
Q 016128 164 LKLGKETHGHVIRADL----NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIF 239 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (394)
.+.|.+.++.....+. ..++.....+.....+.|..+.-..+++..... .++.....++.+++...+.+...+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~-~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS-TSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT-STHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc-CCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 4556666666655321 335555555566666666655544444444432 35555677777777777777777777
Q ss_pred HHHHHcC
Q 016128 240 DLMQQEK 246 (394)
Q Consensus 240 ~~~~~~~ 246 (394)
+.....+
T Consensus 225 ~~~l~~~ 231 (324)
T PF11838_consen 225 DLLLSND 231 (324)
T ss_dssp HHHHCTS
T ss_pred HHHcCCc
Confidence 7777643
No 454
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=54.18 E-value=54 Score=20.81 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=25.3
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhc
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC 59 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 59 (394)
..=+.+.|.+++..+.... ..++..||++.+.+.+.
T Consensus 9 emlDtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 9 EMLDTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3346777888887777555 66788888888776554
No 455
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.83 E-value=17 Score=26.38 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
..+.|.-.+|-.+|.+|.+.|-+|| .|+.|+..+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~~ 140 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAKQ 140 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhcC
No 456
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=53.26 E-value=37 Score=28.18 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
.++.+.++++.|....++....+|.++.-..--+-+|.+.|.+.-|+.-++..
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555443
No 457
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=52.56 E-value=80 Score=22.58 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh-------hCCCCCchHHHH----HHHHhhcCCcccHHHHHHHhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQE-------MEPENPTPFVIL----SNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~m~ 379 (394)
++..|..++...|++++++...++++. +..+.-..|... +.++...|+.++|...|+...
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 556677888999999888776666554 344444444443 335667899999999987643
No 458
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.44 E-value=1.8e+02 Score=26.19 Aligned_cols=203 Identities=8% Similarity=-0.033 Sum_probs=102.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHc
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKC--VTSVLSACADLSALKLGKETHGHVIRADLNKDES--MATALISMYMKC 196 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 196 (394)
...+..|+.+-+ +.+.+.|..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 334456666554 44455677776543 223444555666665 444555666554432 112345566778
Q ss_pred CCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhH--HHHHHHHHccCCHHHHHH
Q 016128 197 GQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF--VAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~ 272 (394)
|+.+.+..+++.-... ..+..-.+ .+...+..|+. ++++.+.+.|..|+.... ...+...+..|+.+-+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 8888877777643211 01111122 23334455665 455555666766543221 123344456688776655
Q ss_pred HHHHchhcCCCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcCCchHHHHHHH
Q 016128 273 IFTMMDDDFGLKPK---QEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 273 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
+++. |..++ ..-.+. +...+..|+.+-+..+++.-..++.. .....+......|+.+-+.-+++
T Consensus 154 Ll~~-----g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 154 LIDH-----KACLDIEDCCGCTP-LIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred HHhc-----CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 5543 33222 112222 33345568888777777766654443 12244443455666654444433
No 459
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.40 E-value=81 Score=22.00 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
..++|..+.+.+...+. ....+-.+-+..+.+.|++++| +..-.....||...|-+|. -.+.|..+++...+.++
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 34555555555555442 1222223334445566666666 2222222234444444332 23555556666666555
Q ss_pred HHcC
Q 016128 243 QQEK 246 (394)
Q Consensus 243 ~~~~ 246 (394)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 5443
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.16 E-value=1.6e+02 Score=26.43 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--C----CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHE--G----FK-PDPATWNSMISGFSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g----~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 140 (394)
+...|++.++-.||+..|+++++.+.-. + +. -.+.+|-.+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888889998888888765321 1 11 145567777888888899999999888864
No 461
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.88 E-value=2.1e+02 Score=26.52 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=18.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSA 157 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 157 (394)
..++.+.|+.++.+|...|..|....-..+..+
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~ 287 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDL 287 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345666666666666666655554433333333
No 462
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.24 E-value=39 Score=17.96 Aligned_cols=16 Identities=6% Similarity=-0.159 Sum_probs=7.7
Q ss_pred HHHHHhcCCchHHHHH
Q 016128 325 LGACWCHLNSDLGEEM 340 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~ 340 (394)
...+-..|++++|+.+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3344455555555555
No 463
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.99 E-value=19 Score=30.85 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=55.3
Q ss_pred ccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHH
Q 016128 263 HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEE 339 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~ 339 (394)
..|.+++|++.|...+. --++....|..-.+++.+.+++..|++-+....+ ||.. .|-.-..+-...|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45777788877777664 2234445555556677777777777777666655 4444 55555555566788888888
Q ss_pred HHHHHHhhC
Q 016128 340 MAMKLQEME 348 (394)
Q Consensus 340 ~~~~~~~~~ 348 (394)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 888777766
No 464
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=49.88 E-value=1.9e+02 Score=25.76 Aligned_cols=54 Identities=11% Similarity=-0.052 Sum_probs=34.5
Q ss_pred HhhhhHhHHHHHHHHHHHHhhhcCCchHH----HHHHHHHHHh--cCChhHHHHHHHHhc
Q 016128 20 ACASLLYLQFGRQVHGLTLKIEKQSDTMI----GTALVDMYLK--CGCLPCAHNVFQELK 73 (394)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~--~g~~~~A~~~~~~~~ 73 (394)
.+.+.+++..|.++|+.+.....+++... +..+..+|.. .-++++|.+.++.+.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~ 198 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPL 198 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhcc
Confidence 45577888888888888887765544433 3333344433 357778888887644
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.02 E-value=62 Score=22.71 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=28.8
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHV 267 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (394)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4445555556667777777777776666666665666666655543
No 466
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.80 E-value=1.3e+02 Score=23.52 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=20.9
Q ss_pred HHHHHhcCcHHHHHHHHHhCCC-CChhhHHHHHHHH
Q 016128 294 VDLLGRSGRLDEARELIRELPE-PTVSVYHSLLGAC 328 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~ 328 (394)
+-.|.+.|.+++|.+++++..+ |+......-+...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 3457777888888888877665 3333333333333
No 467
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.71 E-value=1.4e+02 Score=24.11 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--C--CChhHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--S--RNILTW--NTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATW 116 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 116 (394)
.+...-+|.|+--|.-...+.+|-..|..-.. + .+..++ ..-|...+..|++++|++.++.+...-+.-|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 34444444544444444444445555544322 2 222222 23455566777777777776665443222233222
Q ss_pred HHHHH----HHHccCCHHHHHHHHHH
Q 016128 117 NSMIS----GFSQLGMRFEAFKLFEK 138 (394)
Q Consensus 117 ~~l~~----~~~~~~~~~~a~~~~~~ 138 (394)
-.|.. =..+.|..++|+++.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22221 12344555555555544
No 468
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=48.69 E-value=1.5e+02 Score=24.20 Aligned_cols=110 Identities=10% Similarity=0.125 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCC-CCHh--hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVK-PNSA--SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
+..++--+.-.|+++.|+++.+.+.++|.. |+.. ++-+++ + |+.........+. |-+.++.....+.
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v---a-----eev~~~A~~~~~a-g~~~e~~~~~~~~- 155 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV---A-----EEVANAALKAASA-GESVEPYFLRVFL- 155 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH---H-----HHHHHHHHHHHHc-CCCCChHHHHHHH-
Confidence 344455567789999999999999988843 3321 222221 1 2222222222222 4444444332221
Q ss_pred HHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHH---------hcCCchHHHHHHHHHHhhCCC
Q 016128 296 LLGRSGRLDEARELIRELPEPTVS---VYHSLLGACW---------CHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~ 350 (394)
.+-....-|+.+ .|..+...+. ..++...|..+++++.+++|.
T Consensus 156 ------------~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 156 ------------DLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ------------HHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 111222225554 5555555552 445778899999999998863
No 469
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.27 E-value=1.7e+02 Score=24.72 Aligned_cols=148 Identities=13% Similarity=0.014 Sum_probs=71.4
Q ss_pred cCChhHHHHHHHHhccCCChhHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHH
Q 016128 59 CGCLPCAHNVFQELKGSRNILTWNTMIAGMM----LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRF 130 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~ 130 (394)
.+++..+...+.......+......+...|. ...+..+|...|....+.|.. .....|...|.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHH
Confidence 3556666666666553223323333333332 234566777777766655432 233334444443 33677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc-------hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCc
Q 016128 131 EAFKLFEKMQSTGMVPSLKCVTSVLSACADLS-------ALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQP 199 (394)
Q Consensus 131 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 199 (394)
+|..+|+...+.|..+...+...+...+.... +...|...+.++-..+ +......+...|.. ..+.
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCH
Confidence 77777777777765443222333333333221 2235555666555554 33333334444432 1244
Q ss_pred hHHHHHHHHhhcC
Q 016128 200 SWARRFFDQFEIK 212 (394)
Q Consensus 200 ~~a~~~~~~~~~~ 212 (394)
++|...|......
T Consensus 208 ~~A~~wy~~Aa~~ 220 (292)
T COG0790 208 KKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHHHHHHHHC
Confidence 5566666555443
No 470
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.22 E-value=1.8e+02 Score=25.11 Aligned_cols=166 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG 265 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (394)
|..+-.++...+-.+........+.. .....-..++-+--..--..+|+++|++..+.|-. .|.+..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeI--N~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~-----------~yr~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEI--NNECATAYVLLAEEEATTIVDAERLFKQALKAGET-----------IYRQSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhc--CchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-----------HHhhHH
Q ss_pred CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh---hHHHHHHHHHhcCCchHHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS---VYHSLLGACWCHLNSDLGEEM 340 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~---~~~~l~~~~~~~g~~~~a~~~ 340 (394)
+...--...+.+.++ ....-..+-..|..+-.+.|+..+|.+.|+.+.+ |-.. +...|+.++....-+..+..+
T Consensus 255 q~qh~~~~~da~~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 255 QCQHQSPQHEAQLRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred HHhhhccchhhhhhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhC-CCCCchHHHHHHHHhhc
Q 016128 341 AMKLQEME-PENPTPFVILSNIYAGL 365 (394)
Q Consensus 341 ~~~~~~~~-~~~~~~~~~l~~~~~~~ 365 (394)
+.+..++. |.+......-+-.-.++
T Consensus 334 LakYDdislPkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 334 LAKYDDISLPKSAAICYTAALLKTRA 359 (556)
T ss_pred HHhhccccCcchHHHHHHHHHHHHHH
No 471
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.11 E-value=1.1e+02 Score=22.70 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
.+-+.+.+.|++++..-...+--.....+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 472
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.82 E-value=1.6e+02 Score=26.55 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=21.2
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCC
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLN 180 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 180 (394)
+....|..+.+.+++..|-.+-+++++.+..
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 4455666777888888888888888776543
No 473
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.33 E-value=2.3e+02 Score=26.07 Aligned_cols=357 Identities=10% Similarity=-0.047 Sum_probs=178.4
Q ss_pred HHhhhhH--hHHHHHHHHHHHHhhhcCCc--hHHHHHHHHHH-HhcCChhHHHHHHHHhcc----CCC-----hhHHHHH
Q 016128 19 SACASLL--YLQFGRQVHGLTLKIEKQSD--TMIGTALVDMY-LKCGCLPCAHNVFQELKG----SRN-----ILTWNTM 84 (394)
Q Consensus 19 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l 84 (394)
..+...| ++..+++.++......++-- ..+.-.+...+ .-..+++.|..-+++.-. -|+ ..++..|
T Consensus 15 e~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlL 94 (629)
T KOG2300|consen 15 EHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLL 94 (629)
T ss_pred HHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHH
Confidence 3344555 66777777776665542221 12222233222 224566777666665321 122 2456677
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--
Q 016128 85 IAGMMLNG-RSEKAMELFEGLAHEGFKPDPAT---WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC-- 158 (394)
Q Consensus 85 l~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-- 158 (394)
...|.... .+..+..++.+..+..-...... ...|+..+.-..++..|.+++.-=-+. -.|-...|..++...
T Consensus 95 a~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~ 173 (629)
T KOG2300|consen 95 AHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSM 173 (629)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHH
Confidence 77787766 78888888888776421111222 223455666678888888774321111 111122222222211
Q ss_pred ----h---ccchhhHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHHHcCCchHHHHHHHHhhcC-----C-----
Q 016128 159 ----A---DLSALKLGKETHGHVIRADLNKDESMA--------TALISMYMKCGQPSWARRFFDQFEIK-----P----- 213 (394)
Q Consensus 159 ----~---~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----- 213 (394)
. +..+...+.....++.+.. .+|...- +.-+.-|.-.|+...+...++++... +
T Consensus 174 ~~ll~me~d~~dV~~ll~~~~qi~~n~-~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h 252 (629)
T KOG2300|consen 174 LMLLIMERDDYDVEKLLQRCGQIWQNI-SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGH 252 (629)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCc
Confidence 1 2223444444445555443 3443221 22234455678888888777765432 1
Q ss_pred -------CChhhHHHH----HHHH---------hhcCChhhHHHHHHHHHHc----CCCC-CHhhHH--------HHHHH
Q 016128 214 -------DDPAFWNAM----ISGY---------GRNGEYESAVEIFDLMQQE----KVKP-NSASFV--------AVLSA 260 (394)
Q Consensus 214 -------~~~~~~~~l----~~~~---------~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~--------~l~~~ 260 (394)
+.+..+.-+ |.++ ...|-+++|.+.-+++... ...+ ....++ .++.+
T Consensus 253 ~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c 332 (629)
T KOG2300|consen 253 DEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMC 332 (629)
T ss_pred cccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 111111111 1111 1234455555544443221 1111 222222 22222
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhh--------HHHHHHHHHhcCcHHHHHHHHHhCCC----CChh--hHHHHHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEH--------FGCMVDLLGRSGRLDEARELIRELPE----PTVS--VYHSLLG 326 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~l~~ 326 (394)
-.-.|++.+|++-...|.+-..-.|.+.. ...+...+...|.++.|..-|....+ .|.. .-..+..
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 23568999999888888764333444221 12223344567889999888877655 3333 2234456
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHH----------HHHHHHhhcCCcccHHHHHHHhhh
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENPTPFV----------ILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.|.+.|+- ..+++-...++|+|..++. .-+......+++.+|.+++.+-.+
T Consensus 413 ~YL~~~~~---ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 413 SYLRIGDA---EDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhccH---HHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 67776554 4555555556776544332 222234467899999998887654
No 474
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.77 E-value=60 Score=19.15 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=7.6
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 016128 88 MMLNGRSEKAMELFEGLAH 106 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~ 106 (394)
+.+.|++++|.+..+.+.+
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 3344444444444444443
No 475
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.75 E-value=1.2e+02 Score=23.30 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=22.3
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG 265 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (394)
.++..+...++.-.|.++++.+.+.+..++..|...-+..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333444344445555666666655555555544444444444444
No 476
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.55 E-value=70 Score=19.87 Aligned_cols=48 Identities=6% Similarity=-0.095 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016128 146 PSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194 (394)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (394)
|+...++.++..++.-.-.+.+...+.+..+.|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4445556666666666666666666666666553 34444444444443
No 477
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=46.31 E-value=1.3e+02 Score=24.70 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=14.8
Q ss_pred HHHccCCHHHHHHHHHHchhc
Q 016128 260 ACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~ 280 (394)
++.+.++.+.+..+.+.+.++
T Consensus 201 a~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 201 ALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcccHHHHHHHHHHHHHh
Confidence 444558888888888777664
No 478
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=46.16 E-value=1.8e+02 Score=24.33 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCh-----hhHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 187 TALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEY-----ESAVEIFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
..++..+.+.+....|..+.+.+...+.=..+...|+......... ......+....+. +...+ .|..++-.|
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~~f~-~~l~Ivv~C 163 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQEFP-EYLEIVVNC 163 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HHcCc-chHHHHHHH
Confidence 4566666667777777777777665444444444444433222211 1112222222211 01111 233334444
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH---HhCCCCCh-----h--hHHHHHHHHHhc
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI---RELPEPTV-----S--VYHSLLGACWCH 331 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~-----~--~~~~l~~~~~~~ 331 (394)
.+.-+...-..+|... | ++ ..|...|.+.|+.+.|-.++ +....++. . .-..++......
T Consensus 164 ~RKtE~~~W~~LF~~l----g---~P---~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 164 ARKTEVRYWPYLFDYL----G---SP---RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHhhHHHHHHHHHHhc----C---CH---HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 4433333333333322 2 22 24556667777777765543 33333332 1 334455566667
Q ss_pred CCchHHHHHHHHHHhhCCCC
Q 016128 332 LNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~ 351 (394)
++++-+.++.+-+..++|.+
T Consensus 234 ~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 234 GDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred ccHHHHHHHHHHHHHhCccc
Confidence 77777777777777777654
No 479
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.96 E-value=1e+02 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhc
Q 016128 51 ALVDMYLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 51 ~l~~~~~~~g~~~~A~~~~~~~~ 73 (394)
.++.-|...|+.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34444555566666666666554
No 480
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.68 E-value=1.9e+02 Score=24.72 Aligned_cols=87 Identities=9% Similarity=0.121 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhh----------cCChhhHHH
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGR----------NGEYESAVE 237 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~ 237 (394)
.++++.+.+.++.|.-..+..+.-.+.+.=.+.+...+++.+... +.-|..|+..|+. .|++....+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD---~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmk 339 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD---PQRFDFLLYICCSMLILVRERILEGDFTVNMK 339 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC---hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 467777777788887777777777777766777888888887763 3335555555543 477777777
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
+++.- ...|..+...++..+
T Consensus 340 LLQ~y----p~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 340 LLQNY----PTTDISKMLAVADSL 359 (370)
T ss_pred HHhcC----CCCCHHHHHHHHHHH
Confidence 66542 233444444444444
No 481
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.64 E-value=88 Score=20.75 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
++|+-....|+..|+..|..++..+.-.--.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7788777888888888888888877777777777777777764
No 482
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.59 E-value=80 Score=29.97 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHcCCCCCHh
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSA 252 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~ 252 (394)
|++.+|.+.+-.+...+..|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHH
Confidence 44444444444444444444433
No 483
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.59 E-value=2.3e+02 Score=25.48 Aligned_cols=208 Identities=11% Similarity=0.057 Sum_probs=97.1
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESM--ATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESA 235 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 235 (394)
+..|+.+. ++.+.+.|..++... ..+.+...+..|+.+-+.-+++.-... ..+... ...+...+..|+.+.+
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~-~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI-ESELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCc-ccHHHHHHHCCCHHHH
Confidence 34455544 445555676665432 233455566778776555444431110 011122 2334455677887765
Q ss_pred HHHHHHHHHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhh--HHHHHHHHHhcCcHHHHHHH
Q 016128 236 VEIFDLMQQEKVKPN----SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH--FGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~ 309 (394)
..++ +.|...+ ..-.+. +...+..|+.+-+..+++ . |..|+... -...+...+..|+.+-+..+
T Consensus 85 ~~Ll----~~~~~~~~~~~~~g~tp-L~~A~~~~~~~iv~~Ll~----~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 85 EELL----DLGKFADDVFYKDGMTP-LHLATILKKLDIMKLLIA----R-GADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHH----HcCCcccccccCCCCCH-HHHHHHhCCHHHHHHHHh----C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 5554 4443221 112223 334445677655544443 3 44443221 12234445577888887777
Q ss_pred HHhCCCCCh---hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccccc
Q 016128 310 IRELPEPTV---SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKL 386 (394)
Q Consensus 310 ~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 386 (394)
++.-..++. .-.+.+..+ +..|+.+-+..+++.-...+..+..............|+. ++.+.+.+.|..++
T Consensus 155 l~~g~~~~~~d~~g~TpL~~A-~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n 229 (413)
T PHA02875 155 IDHKACLDIEDCCGCTPLIIA-MAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCN 229 (413)
T ss_pred HhcCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcc
Confidence 776554332 233334333 4556655444433322222211111112233323344554 45566667777664
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.58 E-value=1.1e+02 Score=23.54 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 162 SALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
++.-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33444555555555555444444444444555555543
No 485
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=45.32 E-value=83 Score=20.73 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=40.0
Q ss_pred CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 282 GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.+.|+...|+.++......+...-|..++.+...++.. .+..++. ..+..++++...+.+..
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~~e~KeaL~~lle-----~~PGaa~qia~~v~eey 73 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVDPESKEALKELLE-----ENPGAAMQIAGAVNEEY 73 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHcCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHhh
Confidence 45678888888888887777777777777777665444 5555541 23445666666555543
No 486
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=44.82 E-value=59 Score=23.07 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG 265 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (394)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 4455566666667777777777777766666665555555555544
No 487
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.26 E-value=1.2e+02 Score=21.91 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 016128 96 KAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFE 137 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 137 (394)
+..++|..|..+|+--. ...|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777765543 3345566666677777777777764
No 488
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.44 E-value=29 Score=29.29 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=32.4
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.+.|+.++|..+|+.... +.|+ +.....+.......++.-+|-++|-+...
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 467899999999988874 3443 44444444444445566666666666554
No 489
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=43.31 E-value=1.4e+02 Score=27.93 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=41.3
Q ss_pred hhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-------------------CCChhHHHHHHHHHHhcCCHHHHHH
Q 016128 39 KIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-------------------SRNILTWNTMIAGMMLNGRSEKAME 99 (394)
Q Consensus 39 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~~ll~~~~~~~~~~~a~~ 99 (394)
+.|+..+......++. ...|++..|...++++.. ..+....-.++.+. ..|+.++|+.
T Consensus 202 ~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai-~~~d~~~Al~ 278 (507)
T PRK06645 202 QENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYI-IHRETEKAIN 278 (507)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHH
Confidence 3455555555555554 235777777777776521 11122222333333 4588888888
Q ss_pred HHHHHHhcCCCCC
Q 016128 100 LFEGLAHEGFKPD 112 (394)
Q Consensus 100 ~~~~m~~~g~~p~ 112 (394)
+++++...|..|.
T Consensus 279 ~l~~L~~~g~~~~ 291 (507)
T PRK06645 279 LINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHHcCCCHH
Confidence 8888888877654
No 490
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=43.14 E-value=2.5e+02 Score=25.23 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 016128 114 ATWNSMISGFSQL---GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSA 157 (394)
Q Consensus 114 ~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 157 (394)
..+-.+++++.|+ .+.+.|+-++.+|.+.|-.|-...-..++-+
T Consensus 247 D~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~A 293 (436)
T COG2256 247 DAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIA 293 (436)
T ss_pred chHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3334445554432 4556666666666666654444333333333
No 491
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=42.94 E-value=88 Score=21.96 Aligned_cols=19 Identities=11% Similarity=-0.249 Sum_probs=8.9
Q ss_pred hhHhHHHHHHHHHHHHhhh
Q 016128 23 SLLYLQFGRQVHGLTLKIE 41 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~ 41 (394)
+....++|+++.+.|.++|
T Consensus 73 RC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 73 RCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HhCcHHHHHHHHHHHHHhC
Confidence 3344444444444444444
No 492
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.43 E-value=1.1e+02 Score=24.15 Aligned_cols=61 Identities=10% Similarity=-0.064 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHH-HHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVG-RIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 380 (394)
..+.++..|...|+++.|-++|.-+....+.|......++.--...+.-..+. ++++.|..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 493
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.14 E-value=2e+02 Score=27.48 Aligned_cols=83 Identities=11% Similarity=0.045 Sum_probs=57.7
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCC------HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCC--hh-hHHHHHHHHHhcC
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPK------QEHFGCMVDLLGRSGRLDEARELIRELPEPT--VS-VYHSLLGACWCHL 332 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~l~~~~~~~g 332 (394)
.+..++..+.++|..-.+ -++.| ......+.-+|.+..+.|.|.+++++..+.| .+ +--.+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~--~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLK--DIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 455677788887776554 23333 2234566677888899999999999988733 44 4455566777788
Q ss_pred CchHHHHHHHHHHh
Q 016128 333 NSDLGEEMAMKLQE 346 (394)
Q Consensus 333 ~~~~a~~~~~~~~~ 346 (394)
+.++|+........
T Consensus 443 ~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 443 KSEEALTCLQKIKS 456 (872)
T ss_pred chHHHHHHHHHHHh
Confidence 88888888776655
No 494
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.80 E-value=2.2e+02 Score=24.23 Aligned_cols=110 Identities=17% Similarity=0.091 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
.++....+.++..+..+.++.+. ....-...+..+...|++..|++++.+..+. .. +...|..+=.. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hH
Confidence 34555555666666666666554 3334455677778899999999988887653 00 00111111111 11
Q ss_pred hhhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCchHHH
Q 016128 163 ALKLGKETHGHVIRA-----DLNKDESMATALISMYMKCGQPSWAR 203 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (394)
++++.....+.+.+. -...|+..|..+..+|...|+.+.+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 222222222222211 12357777777888887777665544
No 495
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.50 E-value=3.1e+02 Score=25.90 Aligned_cols=156 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHcCCchHHHHHHHHhhcC-------------CCChhhHHHHHHHHhhcCC-------hhhHHHHHHHHHHcCCCCCH-
Q 016128 193 YMKCGQPSWARRFFDQFEIK-------------PDDPAFWNAMISGYGRNGE-------YESAVEIFDLMQQEKVKPNS- 251 (394)
Q Consensus 193 ~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~- 251 (394)
+....-+++|...|.-.... |-.+.+.-.+...+...|+ ++.++-.|++.....+.|..
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ---------------hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH-hcCcHHHHHHHHHhCCC
Q 016128 252 ---------------ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG-RSGRLDEARELIRELPE 315 (394)
Q Consensus 252 ---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 315 (394)
-+...-+..+.+.|-+..|.++.+.+..- ...-|+.....+|..|+ +..+++--+++++....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-DPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred -------CChhhHHHHHHHHHhcCC---chHHHHHHHHHHhhCC
Q 016128 316 -------PTVSVYHSLLGACWCHLN---SDLGEEMAMKLQEMEP 349 (394)
Q Consensus 316 -------~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~ 349 (394)
|+-.--..++..|..... .+.|...+.++..+.|
T Consensus 407 ~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 407 MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
No 496
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.26 E-value=4.5e+02 Score=27.67 Aligned_cols=155 Identities=6% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHhhhhHhHHHHHH------HHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc----------CCChhHHH
Q 016128 19 SACASLLYLQFGRQ------VHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG----------SRNILTWN 82 (394)
Q Consensus 19 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~ 82 (394)
+.+...|.+.++.+ ++...-..-.+.....|..+...+-+.|+.++|+..-.+..- ..+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-------CCCCH
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHE-------GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG-------MVPSL 148 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~ 148 (394)
.+.-.....+....|...+.+.... .-+|...+++.+-..+...++++.|+++++...... -.++.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHH
Q 016128 149 KCVTSVLSACADLSALKLGKETHGH 173 (394)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~ 173 (394)
.++..+.+.....+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
No 497
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=41.18 E-value=2.1e+02 Score=23.86 Aligned_cols=154 Identities=15% Similarity=0.086 Sum_probs=91.8
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH-----HHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHV-----DKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
..+.++..+.+.++...|..+.+.+... +--..+...++......... ......+....+ -+...+ .|..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~--ll~~f~-~~l~ 158 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVIS--LLQEFP-EYLE 158 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHH--HHHcCc-chHH
Confidence 3678888888989999999998888653 33445555555543322211 111122222221 001111 2333
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC-------chHHHHHHHHhhc
Q 016128 293 MVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP-------TPFVILSNIYAGL 365 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 365 (394)
++-.|.|.=+...=..+|.....| ..++.-|.+.|+.+.|..++--+...++.+. ..-..++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 444455444455555666665433 4677778889999999888877766664332 2344556677788
Q ss_pred CCcccHHHHHHHhhhc
Q 016128 366 GRWEDVGRIRQMINDR 381 (394)
Q Consensus 366 g~~~~a~~~~~~m~~~ 381 (394)
++|+-+.++.+-+..-
T Consensus 234 ~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 234 GDWDLCFELVRFLKAL 249 (258)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999998888777653
No 498
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.04 E-value=2.3e+02 Score=24.29 Aligned_cols=44 Identities=7% Similarity=0.203 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 236 VEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
.++|+.+...++.|.-.++.-+.-.+.+.=.+..++.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555555555666655555555455555555556666665554
No 499
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.93 E-value=4.1e+02 Score=27.15 Aligned_cols=247 Identities=12% Similarity=0.031 Sum_probs=144.0
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
.+++.+-...+..+.+.+..+ +...+......++...-...+.++.+.+........+..+... +|..+-...+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHH
Confidence 567777777788888777644 4444445444666666666666665543322222333333332 466666666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH-
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW- 201 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 201 (394)
+...+..+ .. .+-...+ .+|...-...+.++.+.+..+. +.... ..++..+-...+.++...+..+.
T Consensus 708 L~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~ 775 (897)
T PRK13800 708 LRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAP 775 (897)
T ss_pred HHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccch
Confidence 65543211 22 2222332 3465566666777766655432 22222 24577777778888888776543
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 202 ARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
+...+..+... +++..-...+.++...|..+.+...+..+.+. ++...-...+.++...+.. ++...+..+.+
T Consensus 776 ~~~~L~~ll~D-~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~-- 848 (897)
T PRK13800 776 AGDAVRALTGD-PDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAAD-VAVPALVEALT-- 848 (897)
T ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhcccc-chHHHHHHHhc--
Confidence 34555555443 56777888888999988876665555555543 4555666677777777664 45555555554
Q ss_pred CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 282 GLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
.++..+-...+.++.+.+....+...+....
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3677777788888877533334454444443
No 500
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.90 E-value=2.2e+02 Score=23.89 Aligned_cols=130 Identities=11% Similarity=0.075 Sum_probs=61.7
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhh---HHHH-HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSAS---FVAV-LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (394)
+.+....+.|+.+-......+ |-..| |... +... ..++.+-++.+.++... .+.+-.+|..-=......|
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lN--pAnYTVW~yRr~iL~~l--~~dL~~El~~l~eI~e~--npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLN--PANYTVWQYRRVILRHL--MSDLNKELEYLDEIIED--NPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred HhccccCHHHHHHHHHHHHhC--cccchHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHhc
Confidence 345556667777777666542 22222 1111 1111 12344555566666553 2223333322111122233
Q ss_pred cHH-HHHHHHHhCCCCCh---hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 302 RLD-EARELIRELPEPTV---SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 302 ~~~-~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
++. .-+++.+.|..-|. .+|..---++...+.++.-+.+..++++.+-.|-++|+.-...
T Consensus 127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 444 44555555555222 2444444445555667777777777777665555665544333
Done!