Query 016128
Match_columns 394
No_of_seqs 615 out of 1732
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 08:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-36 4E-41 283.5 37.2 265 113-382 305-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.9E-37 9.9E-42 287.6 31.6 365 9-381 82-504 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.5E-32 2.9E-36 237.3 39.3 358 17-381 5-368 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.6E-31 2.9E-35 230.8 41.0 353 8-367 29-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.1E-33 1.1E-37 250.7 20.6 195 1-196 16-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.5E-32 1.9E-36 242.6 24.3 200 65-264 9-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 6.2E-28 2.1E-32 220.5 34.3 365 11-382 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 7.1E-27 2.4E-31 209.9 36.6 339 30-377 11-405 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 1.5E-26 5E-31 207.9 37.1 356 9-372 24-445 (450)
10 3fp2_A TPR repeat-containing p 100.0 1.2E-25 4.3E-30 206.4 32.5 365 11-382 25-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 5.6E-25 1.9E-29 200.9 32.5 347 7-358 35-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 2.3E-23 8E-28 181.0 34.4 313 48-365 5-353 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.2E-22 4.2E-27 176.5 31.8 301 77-382 2-336 (359)
14 3fp2_A TPR repeat-containing p 99.9 4.3E-22 1.5E-26 182.8 35.8 342 9-356 57-500 (537)
15 3hym_B Cell division cycle pro 99.9 4.4E-22 1.5E-26 171.0 26.7 289 43-368 19-321 (330)
16 3hym_B Cell division cycle pro 99.9 2.7E-21 9.1E-26 166.1 31.4 285 6-297 17-314 (330)
17 2xm6_A Protein corresponding t 99.9 2.1E-19 7.1E-24 162.9 41.7 352 10-383 38-434 (490)
18 1fch_A Peroxisomal targeting s 99.9 2.8E-22 9.5E-27 175.1 21.3 300 57-379 36-357 (368)
19 4g1t_A Interferon-induced prot 99.9 3.9E-20 1.3E-24 167.1 33.2 370 9-392 49-470 (472)
20 2ooe_A Cleavage stimulation fa 99.9 3.4E-19 1.2E-23 163.2 38.3 130 10-141 12-158 (530)
21 1fch_A Peroxisomal targeting s 99.9 1.5E-20 5.3E-25 164.0 23.6 287 22-311 36-354 (368)
22 4eqf_A PEX5-related protein; a 99.9 7.2E-21 2.5E-25 166.0 20.3 271 79-377 66-352 (365)
23 2xm6_A Protein corresponding t 99.9 2.3E-18 7.9E-23 156.1 37.2 335 10-364 74-452 (490)
24 3mkr_A Coatomer subunit epsilo 99.9 9.2E-20 3.2E-24 153.0 24.3 269 86-372 7-285 (291)
25 4eqf_A PEX5-related protein; a 99.9 1.1E-19 3.6E-24 158.6 24.9 265 45-313 64-353 (365)
26 1b89_A Protein (clathrin heavy 99.9 6.6E-21 2.2E-25 163.6 16.2 303 23-363 15-339 (449)
27 1b89_A Protein (clathrin heavy 99.9 2E-21 6.9E-26 166.8 12.9 281 58-375 15-305 (449)
28 3cv0_A Peroxisome targeting si 99.9 4.3E-20 1.5E-24 158.3 21.4 276 79-380 22-314 (327)
29 2ooe_A Cleavage stimulation fa 99.9 7.8E-18 2.7E-22 154.1 35.4 342 34-382 2-455 (530)
30 3cv0_A Peroxisome targeting si 99.8 8.9E-19 3E-23 150.1 26.8 265 46-315 21-314 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 1E-18 3.4E-23 146.7 24.5 276 19-310 7-288 (291)
32 3spa_A Mtrpol, DNA-directed RN 99.8 1.9E-20 6.6E-25 173.4 7.8 149 78-230 127-286 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-19 4.2E-24 168.1 10.5 148 45-197 126-286 (1134)
34 3uq3_A Heat shock protein STI1 99.8 5.9E-18 2E-22 139.7 19.1 227 79-348 6-237 (258)
35 3uq3_A Heat shock protein STI1 99.8 1.3E-17 4.4E-22 137.7 18.7 221 149-382 6-237 (258)
36 4g1t_A Interferon-induced prot 99.8 1.3E-16 4.4E-21 144.0 25.9 335 10-359 93-471 (472)
37 2pl2_A Hypothetical conserved 99.8 1.7E-17 5.9E-22 133.1 17.9 198 180-380 2-213 (217)
38 3e4b_A ALGK; tetratricopeptide 99.8 1.7E-16 5.8E-21 141.8 25.9 345 17-383 9-389 (452)
39 1xi4_A Clathrin heavy chain; a 99.8 1.3E-15 4.4E-20 146.0 31.9 313 17-374 1055-1377(1630)
40 1xi4_A Clathrin heavy chain; a 99.8 3E-15 1E-19 143.5 33.6 324 12-376 986-1340(1630)
41 1xnf_A Lipoprotein NLPI; TPR, 99.8 8.5E-17 2.9E-21 134.2 20.7 242 125-375 17-269 (275)
42 3u4t_A TPR repeat-containing p 99.8 8E-17 2.7E-21 134.2 19.2 246 81-365 6-268 (272)
43 2pl2_A Hypothetical conserved 99.8 1.6E-16 5.4E-21 127.5 20.1 197 43-243 2-212 (217)
44 2h6f_A Protein farnesyltransfe 99.7 6.1E-16 2.1E-20 134.1 22.5 245 115-364 99-365 (382)
45 1ouv_A Conserved hypothetical 99.7 4.4E-15 1.5E-19 123.7 26.2 226 112-351 5-255 (273)
46 3u4t_A TPR repeat-containing p 99.7 7.1E-16 2.4E-20 128.4 20.6 228 151-382 6-251 (272)
47 2ho1_A Type 4 fimbrial biogene 99.7 1.4E-15 4.9E-20 125.0 21.9 198 152-352 41-243 (252)
48 2q7f_A YRRB protein; TPR, prot 99.7 1.8E-16 6E-21 129.7 16.1 208 150-361 25-236 (243)
49 2ho1_A Type 4 fimbrial biogene 99.7 1E-15 3.5E-20 125.9 20.7 198 183-382 37-239 (252)
50 2q7f_A YRRB protein; TPR, prot 99.7 2.9E-16 9.9E-21 128.4 16.8 199 181-382 21-223 (243)
51 1ouv_A Conserved hypothetical 99.7 3.3E-14 1.1E-18 118.4 29.5 224 10-246 5-252 (273)
52 1xnf_A Lipoprotein NLPI; TPR, 99.7 8E-16 2.8E-20 128.2 19.2 116 60-177 19-140 (275)
53 2h6f_A Protein farnesyltransfe 99.7 1E-14 3.6E-19 126.4 26.1 226 47-277 98-344 (382)
54 2vq2_A PILW, putative fimbrial 99.7 3.6E-15 1.2E-19 120.2 21.8 168 185-354 44-218 (225)
55 3e4b_A ALGK; tetratricopeptide 99.7 8.8E-16 3E-20 137.2 19.7 346 17-381 41-421 (452)
56 2vq2_A PILW, putative fimbrial 99.7 1.7E-14 5.7E-19 116.3 24.9 198 46-245 8-211 (225)
57 3sf4_A G-protein-signaling mod 99.7 3.6E-16 1.2E-20 138.1 14.7 298 44-369 7-364 (406)
58 4a1s_A PINS, partner of inscut 99.7 3.3E-16 1.1E-20 138.7 13.5 269 79-348 49-373 (411)
59 3sf4_A G-protein-signaling mod 99.7 6.4E-15 2.2E-19 130.0 20.4 236 7-243 5-294 (406)
60 3vtx_A MAMA; tetratricopeptide 99.7 4.2E-15 1.4E-19 116.0 17.0 164 215-381 4-170 (184)
61 3ro2_A PINS homolog, G-protein 99.7 8.2E-16 2.8E-20 131.9 13.7 275 80-381 7-332 (338)
62 4a1s_A PINS, partner of inscut 99.7 2E-15 7E-20 133.6 15.9 270 46-315 48-371 (411)
63 3ulq_A Response regulator aspa 99.7 1.3E-14 4.3E-19 127.2 20.5 229 120-348 110-369 (383)
64 4abn_A Tetratricopeptide repea 99.7 1.7E-15 5.7E-20 136.2 14.7 210 164-378 84-318 (474)
65 4e6h_A MRNA 3'-END-processing 99.6 1.2E-12 4E-17 121.1 33.6 371 8-381 63-570 (679)
66 3ro2_A PINS homolog, G-protein 99.6 4.9E-15 1.7E-19 127.0 14.8 276 46-349 5-334 (338)
67 3vtx_A MAMA; tetratricopeptide 99.6 1.7E-14 5.7E-19 112.6 16.5 167 182-351 4-174 (184)
68 3ulq_A Response regulator aspa 99.6 7.9E-15 2.7E-19 128.5 15.9 227 154-381 109-368 (383)
69 2ond_A Cleavage stimulation fa 99.6 3.7E-13 1.3E-17 114.0 24.6 238 113-354 8-277 (308)
70 2ond_A Cleavage stimulation fa 99.6 7.2E-13 2.5E-17 112.3 25.3 240 77-319 7-275 (308)
71 4abn_A Tetratricopeptide repea 99.6 7E-14 2.4E-18 125.6 19.2 215 60-279 82-320 (474)
72 3nf1_A KLC 1, kinesin light ch 99.6 2.7E-15 9.4E-20 127.3 8.3 245 112-380 26-306 (311)
73 4gyw_A UDP-N-acetylglucosamine 99.6 4.3E-14 1.5E-18 132.1 16.7 165 213-380 6-173 (723)
74 3q15_A PSP28, response regulat 99.6 6.6E-13 2.3E-17 116.0 22.8 224 123-347 111-365 (378)
75 3nf1_A KLC 1, kinesin light ch 99.6 7.1E-15 2.4E-19 124.7 9.1 245 77-350 26-310 (311)
76 1hz4_A MALT regulatory protein 99.6 3.5E-12 1.2E-16 111.2 25.8 293 81-381 17-349 (373)
77 4e6h_A MRNA 3'-END-processing 99.5 6.7E-11 2.3E-15 109.5 34.0 354 27-383 48-535 (679)
78 3as5_A MAMA; tetratricopeptide 99.5 1.1E-13 3.8E-18 107.7 13.2 163 185-381 10-173 (186)
79 4i17_A Hypothetical protein; T 99.5 9.6E-13 3.3E-17 106.3 18.8 207 146-362 5-224 (228)
80 3q15_A PSP28, response regulat 99.5 5.3E-12 1.8E-16 110.3 24.2 305 7-314 6-363 (378)
81 3as5_A MAMA; tetratricopeptide 99.5 1.1E-12 3.6E-17 102.1 17.3 163 148-314 8-171 (186)
82 1hz4_A MALT regulatory protein 99.5 9.9E-12 3.4E-16 108.3 25.2 299 48-350 16-352 (373)
83 4i17_A Hypothetical protein; T 99.5 1.2E-12 4.1E-17 105.7 14.8 192 181-382 5-210 (228)
84 1qqe_A Vesicular transport pro 99.4 6.1E-11 2.1E-15 99.5 22.8 129 185-316 119-269 (292)
85 4gyw_A UDP-N-acetylglucosamine 99.4 1.2E-11 4.2E-16 115.6 19.9 162 45-209 8-171 (723)
86 3edt_B KLC 2, kinesin light ch 99.4 6.9E-13 2.4E-17 110.7 8.7 154 125-278 13-196 (283)
87 3mv2_B Coatomer subunit epsilo 99.4 1.8E-10 6.3E-15 95.0 22.4 180 167-354 85-289 (310)
88 3qky_A Outer membrane assembly 99.4 7.8E-12 2.7E-16 103.2 14.1 189 183-371 15-251 (261)
89 3edt_B KLC 2, kinesin light ch 99.4 1.1E-11 3.7E-16 103.3 14.9 157 89-245 12-198 (283)
90 3mv2_B Coatomer subunit epsilo 99.4 1.9E-10 6.5E-15 94.9 20.4 240 121-382 21-283 (310)
91 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.2E-10 4.2E-15 93.6 18.3 188 182-385 3-217 (225)
92 4ga2_A E3 SUMO-protein ligase 99.3 2.8E-12 9.5E-17 96.1 7.4 143 222-367 3-149 (150)
93 3qky_A Outer membrane assembly 99.3 8.6E-11 3E-15 96.9 17.1 169 213-382 12-225 (261)
94 2uy1_A Cleavage stimulation fa 99.3 1.5E-09 5E-14 97.6 25.0 353 10-380 14-412 (493)
95 2fo7_A Synthetic consensus TPR 99.3 6.1E-11 2.1E-15 86.7 12.3 123 256-380 6-131 (136)
96 2pzi_A Probable serine/threoni 99.3 1.2E-11 4.2E-16 116.1 10.4 166 195-364 403-580 (681)
97 1qqe_A Vesicular transport pro 99.3 5.6E-10 1.9E-14 93.6 18.4 205 25-244 31-268 (292)
98 2fo7_A Synthetic consensus TPR 99.2 8.1E-10 2.8E-14 80.6 17.0 127 13-141 3-131 (136)
99 3urz_A Uncharacterized protein 99.2 3.1E-10 1.1E-14 90.0 15.5 127 222-351 60-190 (208)
100 2pzi_A Probable serine/threoni 99.2 4.1E-10 1.4E-14 105.7 18.6 170 159-333 402-583 (681)
101 3qou_A Protein YBBN; thioredox 99.2 1.9E-10 6.5E-15 96.1 14.7 164 213-380 114-283 (287)
102 2r5s_A Uncharacterized protein 99.2 1E-10 3.5E-15 90.2 11.4 159 218-380 8-172 (176)
103 3rjv_A Putative SEL1 repeat pr 99.2 1.5E-09 5E-14 86.3 18.1 172 202-383 5-199 (212)
104 3rjv_A Putative SEL1 repeat pr 99.2 2.9E-09 9.8E-14 84.6 19.6 174 66-246 6-198 (212)
105 2vsy_A XCC0866; transferase, g 99.2 1.1E-10 3.7E-15 107.7 12.4 161 196-359 2-169 (568)
106 2vsy_A XCC0866; transferase, g 99.2 2.8E-10 9.6E-15 105.0 15.2 161 161-325 2-169 (568)
107 3urz_A Uncharacterized protein 99.2 1.9E-09 6.5E-14 85.4 17.8 74 84-159 60-133 (208)
108 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.8E-09 6.1E-14 86.8 17.2 186 147-353 3-219 (225)
109 3dra_A Protein farnesyltransfe 99.2 1E-07 3.4E-12 79.5 28.0 218 23-244 44-286 (306)
110 3qou_A Protein YBBN; thioredox 99.2 3.9E-09 1.3E-13 88.2 18.6 164 75-242 114-281 (287)
111 2r5s_A Uncharacterized protein 99.1 1.2E-09 4.1E-14 84.1 14.3 159 14-174 9-170 (176)
112 4ga2_A E3 SUMO-protein ligase 99.1 8E-10 2.7E-14 82.5 12.5 110 21-132 7-118 (150)
113 3dra_A Protein farnesyltransfe 99.1 3.9E-08 1.3E-12 81.9 23.7 160 197-359 124-300 (306)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 1.4E-09 4.8E-14 91.9 14.5 221 125-373 3-253 (307)
115 2uy1_A Cleavage stimulation fa 99.1 5.9E-08 2E-12 87.2 25.4 123 219-346 289-412 (493)
116 2c2l_A CHIP, carboxy terminus 99.1 3.1E-10 1.1E-14 94.5 9.9 93 185-278 6-99 (281)
117 3gyz_A Chaperone protein IPGC; 99.1 2.8E-10 9.7E-15 84.7 8.5 96 287-382 36-134 (151)
118 4gco_A Protein STI-1; structur 99.1 1.1E-09 3.7E-14 79.0 10.7 108 252-361 14-124 (126)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.6E-09 9E-14 84.9 13.4 128 218-351 8-154 (213)
120 2ifu_A Gamma-SNAP; membrane fu 99.0 1.8E-08 6.1E-13 85.1 18.4 226 23-273 3-254 (307)
121 3u3w_A Transcriptional activat 99.0 1.1E-08 3.7E-13 85.8 17.0 159 222-380 81-265 (293)
122 3u3w_A Transcriptional activat 99.0 9.5E-08 3.3E-12 80.0 22.1 204 136-348 34-267 (293)
123 2qfc_A PLCR protein; TPR, HTH, 99.0 2.8E-08 9.7E-13 83.2 18.3 161 219-379 78-264 (293)
124 1a17_A Serine/threonine protei 99.0 3.6E-09 1.2E-13 80.3 11.3 126 253-380 15-145 (166)
125 4gco_A Protein STI-1; structur 99.0 1.7E-09 5.9E-14 78.0 8.9 95 288-382 14-111 (126)
126 2vgx_A Chaperone SYCD; alterna 99.0 5.6E-10 1.9E-14 83.1 6.3 101 252-354 22-125 (148)
127 2vyi_A SGTA protein; chaperone 99.0 5.8E-09 2E-13 75.4 11.1 117 251-369 12-131 (131)
128 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.9E-08 2E-12 77.0 17.3 128 49-178 9-151 (213)
129 2lni_A Stress-induced-phosphop 99.0 6.3E-09 2.2E-13 75.6 10.7 114 251-366 16-132 (133)
130 2fbn_A 70 kDa peptidylprolyl i 99.0 3.9E-10 1.3E-14 88.7 4.3 94 288-381 89-186 (198)
131 1na0_A Designed protein CTPR3; 98.9 1.1E-08 3.7E-13 73.3 11.3 114 251-366 9-125 (125)
132 3q7a_A Farnesyltransferase alp 98.9 1.5E-06 5.2E-11 73.2 25.3 167 27-197 70-256 (349)
133 4f3v_A ESX-1 secretion system 98.9 3E-08 1E-12 80.8 14.4 133 221-358 107-247 (282)
134 2xcb_A PCRH, regulatory protei 98.9 3.6E-09 1.2E-13 78.2 8.0 97 255-353 22-121 (142)
135 1p5q_A FKBP52, FK506-binding p 98.9 7.5E-09 2.6E-13 88.5 11.0 125 252-379 148-292 (336)
136 2vgx_A Chaperone SYCD; alterna 98.9 3E-09 1E-13 79.2 7.4 95 287-381 21-118 (148)
137 2e2e_A Formate-dependent nitri 98.9 3.6E-09 1.2E-13 81.4 8.0 127 226-355 20-152 (177)
138 2c2l_A CHIP, carboxy terminus 98.9 2.8E-08 9.5E-13 82.6 13.5 190 148-346 4-198 (281)
139 2qfc_A PLCR protein; TPR, HTH, 98.9 1.2E-07 4E-12 79.4 17.2 164 79-242 76-263 (293)
140 2e2e_A Formate-dependent nitri 98.9 4E-08 1.4E-12 75.5 13.0 121 21-143 20-145 (177)
141 1a17_A Serine/threonine protei 98.9 1.1E-07 3.8E-12 71.9 15.1 127 47-175 14-144 (166)
142 2kck_A TPR repeat; tetratricop 98.9 1E-08 3.5E-13 71.9 8.6 98 286-383 5-108 (112)
143 3upv_A Heat shock protein STI1 98.9 7.2E-09 2.5E-13 74.7 7.9 94 253-348 6-102 (126)
144 3gyz_A Chaperone protein IPGC; 98.9 1.7E-08 5.7E-13 75.0 9.8 97 45-142 35-133 (151)
145 4gcn_A Protein STI-1; structur 98.8 8.4E-09 2.9E-13 74.5 7.6 91 290-380 11-111 (127)
146 3q7a_A Farnesyltransferase alp 98.8 3.9E-06 1.3E-10 70.8 24.6 172 57-231 65-257 (349)
147 1hxi_A PEX5, peroxisome target 98.8 7.3E-09 2.5E-13 74.0 7.0 94 289-382 19-115 (121)
148 4f3v_A ESX-1 secretion system 98.8 3.3E-08 1.1E-12 80.5 11.4 185 23-211 18-236 (282)
149 3dss_A Geranylgeranyl transfer 98.8 2.1E-06 7.2E-11 72.0 22.3 194 165-362 91-319 (331)
150 1na0_A Designed protein CTPR3; 98.8 1.7E-07 5.9E-12 66.9 13.9 96 46-142 9-106 (125)
151 3gw4_A Uncharacterized protein 98.8 1.2E-07 4.2E-12 74.4 14.1 60 219-278 69-134 (203)
152 1elw_A TPR1-domain of HOP; HOP 98.8 4.8E-08 1.7E-12 69.1 10.7 108 252-361 5-115 (118)
153 1p5q_A FKBP52, FK506-binding p 98.8 3.1E-08 1.1E-12 84.6 11.3 147 25-174 127-291 (336)
154 3upv_A Heat shock protein STI1 98.8 3.2E-08 1.1E-12 71.3 9.7 94 288-381 5-101 (126)
155 3q49_B STIP1 homology and U bo 98.8 2.5E-08 8.6E-13 72.9 9.2 99 250-350 8-109 (137)
156 3sz7_A HSC70 cochaperone (SGT) 98.8 5.8E-08 2E-12 73.5 11.3 108 250-359 10-120 (164)
157 2xcb_A PCRH, regulatory protei 98.8 2.5E-08 8.6E-13 73.6 9.0 95 287-381 18-115 (142)
158 2vyi_A SGTA protein; chaperone 98.8 1E-07 3.4E-12 68.8 11.9 117 45-163 11-129 (131)
159 3sz7_A HSC70 cochaperone (SGT) 98.8 1.6E-08 5.5E-13 76.7 7.9 98 285-382 9-109 (164)
160 3gw4_A Uncharacterized protein 98.8 1.7E-07 5.8E-12 73.6 13.6 131 113-243 26-174 (203)
161 2lni_A Stress-induced-phosphop 98.8 1.3E-07 4.5E-12 68.4 11.8 116 43-160 13-130 (133)
162 2dba_A Smooth muscle cell asso 98.7 1.5E-07 5.1E-12 69.6 12.0 111 250-363 27-144 (148)
163 3q49_B STIP1 homology and U bo 98.7 5.3E-08 1.8E-12 71.2 8.2 95 286-380 8-105 (137)
164 2fbn_A 70 kDa peptidylprolyl i 98.7 1.2E-07 4E-12 74.4 10.6 147 19-168 12-176 (198)
165 2kck_A TPR repeat; tetratricop 98.7 2E-07 6.9E-12 65.1 9.8 99 252-352 7-111 (112)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.4E-07 4.8E-12 84.2 10.8 128 252-379 269-413 (457)
167 1wao_1 Serine/threonine protei 98.6 6.5E-08 2.2E-12 86.7 8.4 117 258-376 13-134 (477)
168 1elw_A TPR1-domain of HOP; HOP 98.6 1.7E-06 5.9E-11 60.8 14.3 95 47-142 5-101 (118)
169 2dba_A Smooth muscle cell asso 98.6 2.2E-07 7.4E-12 68.8 9.9 98 285-382 26-129 (148)
170 4b4t_Q 26S proteasome regulato 98.6 3.6E-07 1.2E-11 81.1 12.5 161 219-379 58-243 (434)
171 1elr_A TPR2A-domain of HOP; HO 98.6 1.9E-07 6.5E-12 67.3 8.8 107 254-363 7-123 (131)
172 3dss_A Geranylgeranyl transfer 98.6 1.1E-05 3.8E-10 67.6 20.3 180 199-381 90-304 (331)
173 4gcn_A Protein STI-1; structur 98.6 1.5E-06 5E-11 62.5 12.8 94 48-141 10-111 (127)
174 2xev_A YBGF; tetratricopeptide 98.6 1.7E-07 5.9E-12 67.6 7.8 103 254-358 5-116 (129)
175 2hr2_A Hypothetical protein; a 98.6 1.9E-07 6.5E-12 68.7 7.8 61 320-380 59-130 (159)
176 1hxi_A PEX5, peroxisome target 98.6 2.2E-07 7.5E-12 66.2 8.1 96 254-351 20-118 (121)
177 1dce_A Protein (RAB geranylger 98.6 6E-06 2E-10 75.5 19.4 173 195-370 40-244 (567)
178 2xev_A YBGF; tetratricopeptide 98.6 6.2E-07 2.1E-11 64.5 10.3 92 221-315 7-104 (129)
179 1elr_A TPR2A-domain of HOP; HO 98.5 1.1E-06 3.6E-11 63.3 11.2 93 49-141 7-107 (131)
180 4b4t_Q 26S proteasome regulato 98.5 6.3E-05 2.2E-09 66.5 24.6 192 53-244 11-244 (434)
181 2if4_A ATFKBP42; FKBP-like, al 98.5 7.5E-08 2.6E-12 82.3 5.3 147 216-382 179-329 (338)
182 3rkv_A Putative peptidylprolyl 98.5 1.9E-07 6.4E-12 70.5 6.9 77 287-363 63-143 (162)
183 3k9i_A BH0479 protein; putativ 98.5 6.4E-08 2.2E-12 68.6 3.9 90 264-354 3-97 (117)
184 1ihg_A Cyclophilin 40; ppiase 98.5 3.4E-07 1.2E-11 79.1 8.8 88 286-373 272-362 (370)
185 2l6j_A TPR repeat-containing p 98.5 6.2E-08 2.1E-12 67.8 2.9 93 286-378 3-104 (111)
186 3ro3_A PINS homolog, G-protein 98.5 3.7E-07 1.3E-11 68.5 7.2 61 320-380 91-157 (164)
187 3rkv_A Putative peptidylprolyl 98.5 4.1E-07 1.4E-11 68.7 7.3 63 320-382 65-127 (162)
188 3n71_A Histone lysine methyltr 98.4 3.9E-07 1.3E-11 81.2 7.7 124 260-383 318-466 (490)
189 3ro3_A PINS homolog, G-protein 98.4 8.9E-07 3E-11 66.4 8.6 96 253-348 51-159 (164)
190 1wao_1 Serine/threonine protei 98.4 1.3E-06 4.3E-11 78.4 10.9 119 190-311 13-134 (477)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1E-06 3.5E-11 78.6 9.9 140 26-168 249-405 (457)
192 2if4_A ATFKBP42; FKBP-like, al 98.4 1.4E-06 4.7E-11 74.4 10.2 151 183-352 179-333 (338)
193 2hr2_A Hypothetical protein; a 98.4 1E-06 3.5E-11 64.8 7.8 72 289-360 59-144 (159)
194 3k9i_A BH0479 protein; putativ 98.3 1.4E-06 4.9E-11 61.5 7.1 81 197-278 4-88 (117)
195 3ma5_A Tetratricopeptide repea 98.3 1.9E-06 6.6E-11 58.9 7.0 61 320-380 9-69 (100)
196 1na3_A Designed protein CTPR2; 98.3 2.4E-06 8.3E-11 57.0 6.8 80 287-366 9-91 (91)
197 1ihg_A Cyclophilin 40; ppiase 98.2 1.5E-05 5.1E-10 68.9 12.9 91 77-169 272-362 (370)
198 1klx_A Cysteine rich protein B 98.2 3.4E-05 1.2E-09 56.1 12.6 115 22-144 6-128 (138)
199 1dce_A Protein (RAB geranylger 98.2 0.00014 4.7E-09 66.5 18.7 170 27-200 45-243 (567)
200 2kat_A Uncharacterized protein 98.2 3.5E-06 1.2E-10 59.2 6.5 80 269-350 3-85 (115)
201 1zu2_A Mitochondrial import re 98.2 8.7E-07 3E-11 65.1 3.1 82 300-381 15-120 (158)
202 3bee_A Putative YFRE protein; 98.0 2.4E-05 8.1E-10 52.3 7.2 69 316-384 3-75 (93)
203 3n71_A Histone lysine methyltr 98.0 1E-05 3.6E-10 72.1 7.1 123 225-347 318-464 (490)
204 2kat_A Uncharacterized protein 98.0 5.5E-05 1.9E-09 52.9 9.2 65 213-278 16-80 (115)
205 1klx_A Cysteine rich protein B 97.9 0.00037 1.3E-08 50.5 13.4 110 128-246 10-127 (138)
206 2l6j_A TPR repeat-containing p 97.9 1.4E-05 4.7E-10 55.5 5.4 61 217-278 5-65 (111)
207 1zu2_A Mitochondrial import re 97.9 7.5E-05 2.6E-09 54.8 8.9 86 21-107 12-120 (158)
208 3qww_A SET and MYND domain-con 97.8 1.8E-05 6.2E-10 69.4 5.5 81 300-380 311-410 (433)
209 1na3_A Designed protein CTPR2; 97.8 0.00023 8E-09 47.0 9.9 60 81-141 12-71 (91)
210 3qwp_A SET and MYND domain-con 97.7 5E-05 1.7E-09 66.7 6.9 59 320-378 331-397 (429)
211 3ma5_A Tetratricopeptide repea 97.7 0.00012 4.1E-09 49.8 7.4 61 183-243 7-68 (100)
212 3ly7_A Transcriptional activat 97.7 0.0015 5.1E-08 55.2 15.0 63 77-141 276-338 (372)
213 2kc7_A BFR218_protein; tetratr 97.7 4E-05 1.4E-09 51.9 4.6 79 293-379 6-88 (99)
214 3qwp_A SET and MYND domain-con 97.7 0.00013 4.4E-09 64.1 8.5 100 258-357 294-415 (429)
215 3qww_A SET and MYND domain-con 97.7 9.4E-05 3.2E-09 64.9 7.4 93 263-355 310-424 (433)
216 3mkq_A Coatomer beta'-subunit; 97.6 0.0083 2.8E-07 57.6 20.1 121 87-238 608-729 (814)
217 3ly7_A Transcriptional activat 97.5 0.00077 2.6E-08 56.9 10.8 138 213-352 191-344 (372)
218 1wy6_A Hypothetical protein ST 97.5 0.0068 2.3E-07 42.4 13.4 141 226-384 17-157 (172)
219 2kc7_A BFR218_protein; tetratr 97.5 8.1E-05 2.8E-09 50.4 3.6 59 324-382 6-65 (99)
220 3mkq_A Coatomer beta'-subunit; 97.3 0.0096 3.3E-07 57.2 17.1 152 22-209 610-762 (814)
221 3bee_A Putative YFRE protein; 97.2 0.0019 6.5E-08 42.9 7.7 68 284-351 3-76 (93)
222 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0019 6.4E-08 44.1 7.6 72 287-358 5-86 (104)
223 3u64_A Protein TP_0956; tetrat 97.1 0.0011 3.8E-08 53.6 6.9 86 303-388 179-276 (301)
224 1pc2_A Mitochondria fission pr 96.9 0.0036 1.2E-07 45.4 7.4 88 268-357 15-110 (152)
225 3lvg_A Clathrin heavy chain 1; 96.9 1.3E-06 4.5E-11 75.0 -12.3 304 46-378 54-391 (624)
226 3u64_A Protein TP_0956; tetrat 96.8 0.15 5.1E-06 41.4 18.1 155 26-189 102-283 (301)
227 3lvg_A Clathrin heavy chain 1; 96.8 0.00062 2.1E-08 59.0 3.0 215 10-237 82-325 (624)
228 3mkq_B Coatomer subunit alpha; 96.8 0.1 3.6E-06 38.8 16.3 46 88-139 15-60 (177)
229 1wy6_A Hypothetical protein ST 96.7 0.09 3.1E-06 36.9 12.6 49 58-106 19-67 (172)
230 1pc2_A Mitochondria fission pr 96.5 0.023 8E-07 41.2 9.3 82 25-107 12-100 (152)
231 1qsa_A Protein (soluble lytic 96.3 0.63 2.2E-05 42.8 21.8 313 13-346 9-347 (618)
232 1nzn_A CGI-135 protein, fissio 96.3 0.03 1E-06 39.0 8.3 89 267-357 17-113 (126)
233 3mkq_B Coatomer subunit alpha; 96.3 0.22 7.6E-06 37.1 17.2 44 195-242 17-60 (177)
234 4h7y_A Dual specificity protei 96.3 0.009 3.1E-07 42.7 5.6 110 249-360 11-136 (161)
235 2v5f_A Prolyl 4-hydroxylase su 96.1 0.049 1.7E-06 36.8 8.9 65 9-73 3-73 (104)
236 4b4t_P 26S proteasome regulato 96.0 0.32 1.1E-05 42.8 15.7 186 24-209 29-244 (445)
237 4gns_B Protein CSD3, chitin bi 95.9 0.023 7.9E-07 53.1 8.1 55 325-379 344-398 (754)
238 4h7y_A Dual specificity protei 95.6 0.12 4.2E-06 37.0 9.0 53 92-145 74-126 (161)
239 4fhn_B Nucleoporin NUP120; pro 95.0 0.7 2.4E-05 46.2 15.8 84 183-268 899-988 (1139)
240 4gns_B Protein CSD3, chitin bi 95.0 0.19 6.6E-06 47.0 11.0 126 117-242 252-397 (754)
241 1v54_E Cytochrome C oxidase po 94.8 0.3 1E-05 32.1 8.2 64 231-296 25-88 (109)
242 2ff4_A Probable regulatory pro 94.6 0.057 1.9E-06 46.7 6.2 67 322-388 175-246 (388)
243 4ady_A RPN2, 26S proteasome re 94.5 3.6 0.00012 39.6 24.2 256 56-319 384-662 (963)
244 4fhn_B Nucleoporin NUP120; pro 94.5 2.6 9E-05 42.2 18.3 128 115-244 901-1049(1139)
245 4b4t_P 26S proteasome regulato 94.3 2.5 8.7E-05 37.1 16.1 188 126-314 29-245 (445)
246 4ady_A RPN2, 26S proteasome re 94.3 4 0.00014 39.4 23.2 24 15-38 234-257 (963)
247 3ffl_A Anaphase-promoting comp 93.8 0.19 6.4E-06 36.8 6.5 119 253-383 22-153 (167)
248 1nzn_A CGI-135 protein, fissio 93.7 1.2 3.9E-05 31.1 11.9 89 18-107 8-103 (126)
249 3ffl_A Anaphase-promoting comp 93.7 0.5 1.7E-05 34.6 8.5 114 188-315 25-150 (167)
250 1qsa_A Protein (soluble lytic 93.7 4.3 0.00015 37.4 24.6 309 48-380 74-409 (618)
251 2ff4_A Probable regulatory pro 93.5 2 6.7E-05 37.1 13.6 67 84-151 177-248 (388)
252 2y69_E Cytochrome C oxidase su 93.4 0.84 2.9E-05 31.9 8.6 64 231-296 68-131 (152)
253 1y8m_A FIS1; mitochondria, unk 92.5 1.7 5.7E-05 30.9 9.5 73 284-356 36-115 (144)
254 2wpv_A GET4, UPF0363 protein Y 92.1 4.4 0.00015 33.4 18.7 166 81-278 36-215 (312)
255 1v54_E Cytochrome C oxidase po 92.0 0.9 3.1E-05 29.9 6.9 61 26-86 25-87 (109)
256 3lpz_A GET4 (YOR164C homolog); 91.5 5.4 0.00018 33.2 20.5 110 186-310 38-159 (336)
257 3o48_A Mitochondria fission 1 91.2 0.7 2.4E-05 32.4 6.3 70 285-354 38-114 (134)
258 1zbp_A Hypothetical protein VP 90.5 3.1 0.00011 33.3 10.2 118 225-353 6-135 (273)
259 3txn_A 26S proteasome regulato 90.4 7.9 0.00027 33.2 25.9 286 48-346 21-342 (394)
260 2wpv_A GET4, UPF0363 protein Y 90.3 6.9 0.00023 32.3 17.3 113 186-311 36-158 (312)
261 3lpz_A GET4 (YOR164C homolog); 90.2 7.2 0.00025 32.5 21.5 164 83-278 40-214 (336)
262 3o48_A Mitochondria fission 1 88.0 5.3 0.00018 28.0 9.1 50 163-212 58-107 (134)
263 3eiq_C Programmed cell death p 87.9 5.4 0.00019 33.6 10.4 23 255-277 221-243 (358)
264 4b4t_R RPN7, 26S proteasome re 87.2 8.3 0.00028 33.7 11.8 99 79-177 132-237 (429)
265 4b4t_R RPN7, 26S proteasome re 86.3 6.7 0.00023 34.3 10.7 119 93-211 109-236 (429)
266 2y69_E Cytochrome C oxidase su 85.6 7.4 0.00025 27.3 8.8 59 96-155 71-129 (152)
267 2uwj_G Type III export protein 83.9 7.1 0.00024 25.7 7.1 80 264-348 19-98 (115)
268 3esl_A Checkpoint serine/threo 83.8 12 0.00042 28.4 10.8 56 91-146 92-148 (202)
269 2p58_C Putative type III secre 83.6 7.4 0.00025 25.6 8.0 80 264-348 20-99 (116)
270 1y8m_A FIS1; mitochondria, unk 82.7 11 0.00037 26.8 10.3 49 164-212 58-106 (144)
271 2qx5_A Nucleoporin NIC96; mRNA 82.6 31 0.001 32.0 17.0 85 294-378 450-564 (661)
272 3esl_A Checkpoint serine/threo 81.5 7 0.00024 29.7 7.4 46 303-348 95-145 (202)
273 2uwj_G Type III export protein 77.9 12 0.00042 24.6 7.7 48 56-106 49-96 (115)
274 2p58_C Putative type III secre 77.3 13 0.00044 24.5 8.5 49 56-107 50-98 (116)
275 1n11_A Ankyrin; clathrin, BAND 76.9 15 0.0005 31.9 9.5 113 16-137 16-134 (437)
276 4a1g_A Mitotic checkpoint seri 76.2 14 0.00048 26.6 7.4 49 337-385 84-134 (152)
277 1wdy_A 2-5A-dependent ribonucl 75.7 16 0.00055 29.1 8.9 23 228-250 191-213 (285)
278 1n11_A Ankyrin; clathrin, BAND 75.1 28 0.00097 30.1 10.9 81 51-136 16-100 (437)
279 2wvi_A Mitotic checkpoint seri 73.4 9.6 0.00033 27.9 6.0 29 320-348 98-126 (164)
280 4a1g_A Mitotic checkpoint seri 72.3 24 0.00084 25.4 10.0 50 97-146 84-134 (152)
281 2zu6_B Programmed cell death p 71.2 12 0.00042 30.8 6.9 56 49-105 6-65 (307)
282 2ion_A PDCD4, programmed cell 70.3 24 0.00083 25.4 7.6 25 49-73 12-36 (152)
283 1zbp_A Hypothetical protein VP 70.3 40 0.0014 27.0 13.9 53 20-73 6-58 (273)
284 2d2s_A Exocyst complex compone 69.2 30 0.001 27.2 8.5 27 182-208 90-116 (235)
285 4b4t_S RPN3, 26S proteasome re 67.9 67 0.0023 28.7 15.3 64 182-245 230-299 (523)
286 2wvi_A Mitotic checkpoint seri 65.7 37 0.0013 24.8 10.1 54 95-148 77-131 (164)
287 3eiq_C Programmed cell death p 63.2 68 0.0023 27.1 15.2 72 48-121 56-131 (358)
288 1wgl_A TOLL-interacting protei 62.2 12 0.00041 21.8 3.7 50 338-388 10-59 (59)
289 3bqo_A Telomeric repeat-bindin 62.1 37 0.0013 25.6 7.1 18 296-313 126-143 (211)
290 4aez_C MAD3, mitotic spindle c 62.1 46 0.0016 25.8 8.0 52 95-146 131-183 (223)
291 4gq2_M Nucleoporin NUP120; bet 61.3 88 0.003 30.7 11.8 85 257-347 816-926 (950)
292 2ion_A PDCD4, programmed cell 60.3 45 0.0015 24.0 7.7 76 81-157 12-89 (152)
293 4aez_C MAD3, mitotic spindle c 58.7 36 0.0012 26.4 6.9 29 320-348 152-180 (223)
294 3ltm_A Alpha-REP4; protein eng 57.0 60 0.002 24.4 20.6 17 182-198 125-141 (211)
295 4fke_A Aminopeptidase N; zinc 56.7 1.5E+02 0.0051 28.9 14.0 167 15-181 690-864 (909)
296 3bu8_A Telomeric repeat-bindin 55.6 68 0.0023 24.6 11.2 21 25-45 33-53 (235)
297 3jxi_A Vanilloid receptor-rela 55.5 8.6 0.00029 30.5 3.3 92 17-113 8-121 (260)
298 3txn_A 26S proteasome regulato 54.9 1E+02 0.0035 26.4 26.9 290 80-383 21-345 (394)
299 1wdy_A 2-5A-dependent ribonucl 53.6 80 0.0027 24.8 11.2 19 83-101 7-25 (285)
300 1ug3_A EIF4GI, eukaryotic prot 53.3 26 0.00088 29.4 5.9 146 49-209 14-167 (339)
301 3ltm_A Alpha-REP4; protein eng 52.2 72 0.0025 23.9 19.1 153 43-209 30-182 (211)
302 2d2s_A Exocyst complex compone 51.9 84 0.0029 24.6 9.8 85 53-140 25-118 (235)
303 4b4t_S RPN3, 26S proteasome re 51.5 1.3E+02 0.0046 26.8 11.9 61 47-107 232-299 (523)
304 2xig_A Ferric uptake regulatio 51.1 61 0.0021 23.2 6.9 60 139-199 18-77 (150)
305 2nsz_A Programmed cell death p 51.1 59 0.002 22.6 9.1 61 49-110 10-75 (129)
306 2nsz_A Programmed cell death p 47.9 67 0.0023 22.3 10.1 68 81-149 10-79 (129)
307 2f6m_A Suppressor protein STP2 47.4 43 0.0015 19.9 5.8 47 12-59 3-49 (65)
308 2fe3_A Peroxide operon regulat 46.2 59 0.002 23.0 6.1 60 139-199 13-72 (145)
309 3ltj_A Alpharep-4; protein eng 46.0 89 0.003 23.2 20.1 151 182-344 27-177 (201)
310 3bqo_A Telomeric repeat-bindin 44.9 99 0.0034 23.4 10.9 45 62-106 94-145 (211)
311 3ltj_A Alpharep-4; protein eng 43.8 97 0.0033 23.0 20.2 59 182-243 120-178 (201)
312 2fe3_A Peroxide operon regulat 43.7 84 0.0029 22.2 6.9 14 232-245 37-50 (145)
313 1oyz_A Hypothetical protein YI 43.6 1.2E+02 0.0041 24.0 26.5 179 44-233 35-223 (280)
314 3aji_A 26S proteasome non-ATPa 43.5 1E+02 0.0036 23.3 11.6 18 156-173 11-28 (231)
315 2r9g_A AAA ATPase, central reg 42.6 1.1E+02 0.0037 23.2 10.7 36 126-162 27-62 (204)
316 3mv2_A Coatomer subunit alpha; 42.4 1.4E+02 0.005 24.6 9.7 132 56-201 124-260 (325)
317 1mzb_A Ferric uptake regulatio 41.7 63 0.0021 22.6 5.6 61 139-200 9-70 (136)
318 4ets_A Ferric uptake regulatio 41.6 95 0.0032 22.5 6.7 46 220-265 36-83 (162)
319 2o03_A Probable zinc uptake re 40.9 63 0.0021 22.4 5.5 46 221-266 15-60 (131)
320 2p22_A Suppressor protein STP2 40.6 91 0.0031 23.0 6.2 51 8-59 108-158 (174)
321 3rjo_A Endoplasmic reticulum a 40.5 1.8E+02 0.0061 25.1 16.0 30 112-141 266-295 (419)
322 3mwm_A ZUR, putative metal upt 40.2 57 0.002 22.9 5.2 47 220-266 17-63 (139)
323 3ygs_P Procaspase 9; apoptosis 38.9 75 0.0026 20.6 5.2 37 60-97 51-87 (97)
324 3eyy_A Putative iron uptake re 38.8 1E+02 0.0035 21.8 6.6 60 138-199 9-68 (145)
325 4ets_A Ferric uptake regulatio 38.3 1.1E+02 0.0038 22.1 6.8 70 130-200 14-86 (162)
326 3eyy_A Putative iron uptake re 38.1 58 0.002 23.1 5.0 59 102-162 8-66 (145)
327 3t8k_A Uncharacterized protein 37.9 1.2E+02 0.0041 22.4 7.5 56 57-112 14-69 (186)
328 1ug3_A EIF4GI, eukaryotic prot 37.4 1.8E+02 0.0061 24.2 17.9 24 15-38 15-38 (339)
329 3ljn_A Hypothetical protein; a 37.3 1.6E+02 0.0056 24.3 8.7 215 146-376 16-265 (364)
330 2w57_A Ferric uptake regulatio 37.2 68 0.0023 22.9 5.3 62 138-200 7-69 (150)
331 2zu6_B Programmed cell death p 37.0 1.7E+02 0.0059 23.9 14.0 64 187-250 170-236 (307)
332 3ygs_P Procaspase 9; apoptosis 36.1 71 0.0024 20.7 4.8 36 198-235 52-87 (97)
333 2fu4_A Ferric uptake regulatio 35.2 79 0.0027 19.4 7.9 60 139-199 8-68 (83)
334 1k1a_A B-cell lymphoma 3-encod 35.1 1.5E+02 0.005 22.5 11.4 18 298-315 124-141 (241)
335 3bu8_A Telomeric repeat-bindin 34.8 1.6E+02 0.0053 22.7 11.3 23 190-212 121-143 (235)
336 2b7e_A PRE-mRNA processing pro 34.7 25 0.00084 20.5 2.0 29 95-123 3-31 (59)
337 3hra_A Ankyrin repeat family p 34.0 58 0.002 24.1 4.8 15 57-71 13-27 (201)
338 3ctd_A Putative ATPase, AAA fa 33.6 1.6E+02 0.0055 22.5 10.2 45 118-162 37-84 (213)
339 3mwm_A ZUR, putative metal upt 33.0 93 0.0032 21.8 5.3 48 152-199 17-64 (139)
340 2yru_A Steroid receptor RNA ac 32.7 77 0.0026 21.6 4.5 42 100-141 48-89 (118)
341 4gq2_M Nucleoporin NUP120; bet 32.5 3.7E+02 0.013 26.4 13.9 48 115-162 899-950 (950)
342 3kae_A CDC27, possible protein 32.5 1.5E+02 0.0052 21.9 13.8 24 326-349 216-239 (242)
343 3kea_A K1L; tropism, ANK repea 32.2 1.9E+02 0.0065 23.0 10.1 19 294-312 165-183 (285)
344 3b7b_A Euchromatic histone-lys 31.2 56 0.0019 25.0 4.4 18 363-380 218-235 (237)
345 2xig_A Ferric uptake regulatio 31.0 1.4E+02 0.0049 21.2 8.1 32 120-151 33-64 (150)
346 1bpo_A Protein (clathrin); cla 30.4 2.8E+02 0.0097 24.4 9.9 46 230-278 343-388 (494)
347 3kae_A CDC27, possible protein 30.3 1.7E+02 0.0057 21.7 9.6 48 58-108 45-92 (242)
348 3bge_A Predicted ATPase; struc 30.1 1.8E+02 0.0061 22.0 9.6 37 126-162 20-56 (201)
349 3eu9_A Huntingtin-interacting 29.8 1.8E+02 0.0061 21.9 7.4 137 191-340 14-161 (240)
350 2o03_A Probable zinc uptake re 29.4 90 0.0031 21.5 4.7 42 85-126 17-58 (131)
351 1ya0_A SMG-7 transcript varian 29.3 1.1E+02 0.0039 27.1 6.3 71 294-364 159-232 (497)
352 2ko4_A Mediator of RNA polymer 29.3 77 0.0026 19.6 3.6 40 204-243 24-63 (81)
353 2dzn_A Probable 26S proteasome 29.1 1.8E+02 0.006 21.8 7.0 14 299-312 116-129 (228)
354 2f8y_A Notch homolog 1, transl 28.8 1.8E+02 0.0062 21.7 8.9 18 297-314 132-149 (223)
355 1bpo_A Protein (clathrin); cla 28.7 3E+02 0.01 24.2 13.4 130 176-315 354-484 (494)
356 1bd8_A P19INK4D CDK4/6 inhibit 28.6 1E+02 0.0035 21.4 5.2 19 190-208 6-24 (156)
357 2ijq_A Hypothetical protein; s 28.1 1.7E+02 0.0059 21.2 7.7 51 126-176 45-103 (161)
358 2w57_A Ferric uptake regulatio 27.9 1.6E+02 0.0056 20.8 7.9 60 102-162 6-66 (150)
359 1o9d_A 14-3-3-like protein C; 27.2 2.4E+02 0.0081 22.5 8.8 55 189-243 14-73 (260)
360 1mzb_A Ferric uptake regulatio 27.2 1.6E+02 0.0054 20.4 7.5 58 104-162 9-67 (136)
361 1k1a_A B-cell lymphoma 3-encod 27.2 2E+02 0.0069 21.7 9.8 23 226-248 16-38 (241)
362 2r9g_A AAA ATPase, central reg 27.0 2.1E+02 0.0071 21.7 9.6 57 89-146 25-86 (204)
363 3mkr_B Coatomer subunit alpha; 26.6 2.7E+02 0.0093 23.0 16.2 28 219-246 201-228 (320)
364 3bge_A Predicted ATPase; struc 25.8 2.2E+02 0.0074 21.6 8.2 39 89-127 18-56 (201)
365 3hra_A Ankyrin repeat family p 25.7 2E+02 0.0067 21.0 8.3 149 191-348 10-168 (201)
366 2etb_A Transient receptor pote 25.6 50 0.0017 25.8 3.2 55 17-72 5-69 (256)
367 1ya0_A SMG-7 transcript varian 25.5 1.8E+02 0.006 25.9 6.8 75 254-330 155-232 (497)
368 3ljn_A Hypothetical protein; a 24.8 1.5E+02 0.0052 24.5 6.3 214 112-343 17-266 (364)
369 2ijq_A Hypothetical protein; s 23.3 2.2E+02 0.0074 20.7 7.9 52 90-141 44-103 (161)
370 2yru_A Steroid receptor RNA ac 22.6 1.4E+02 0.0048 20.3 4.4 42 238-279 48-89 (118)
371 3jxi_A Vanilloid receptor-rela 21.1 2E+02 0.0067 22.2 6.0 17 192-208 11-27 (260)
372 3qye_A TBC1 domain family memb 21.0 2.9E+02 0.0099 22.7 7.1 99 1-100 214-316 (331)
373 3aji_A 26S proteasome non-ATPa 20.5 2.7E+02 0.0093 20.8 8.2 182 189-387 9-200 (231)
374 3ctd_A Putative ATPase, AAA fa 20.1 3E+02 0.01 21.1 9.0 58 89-146 46-108 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-36 Score=283.51 Aligned_cols=265 Identities=8% Similarity=-0.021 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISM 192 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (394)
..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++..
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 3333344444444444444444444443322 1133334444444444444444444444444332 3467788888899
Q ss_pred HHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHH
Q 016128 193 YMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKAL 271 (394)
Q Consensus 193 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 271 (394)
|.+.|++++|.++|+++... |.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999887653 5677889999999999999999999999988764 347788899999999999999999
Q ss_pred HHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--------CC--hhhHHHHHHHHHhcCCchHHHHHH
Q 016128 272 QIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--------PT--VSVYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~--~~~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
++|+.+.+. .+.++.+|+.++..|.+.|++++|.++|+++.+ |+ ..+|..++.+|.+.|++++|.+.+
T Consensus 462 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 462 EYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998863 345788899999999999999999999988743 55 338999999999999999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 342 MKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+++.+.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-37 Score=287.59 Aligned_cols=365 Identities=10% Similarity=-0.038 Sum_probs=323.3
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHH
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAG 87 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~ 87 (394)
++...|+.++..|.+.|++++|.++|+.+... .|+..++..++.+|.+.|++++|+.+|+++.. +++..+++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 67889999999999999999999999999954 46778999999999999999999999999854 6889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 016128 88 MMLNGRSEKAMELFEGLAHE---------------GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVT 152 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~---------------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 152 (394)
|.+.|++++|.++|+++... |..++..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999953222 23346889999999999999999999999999876422 333333
Q ss_pred H--------------------------------------HHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016128 153 S--------------------------------------VLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194 (394)
Q Consensus 153 ~--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (394)
. ++..|.+.|++++|.++++++.+. +++..++..++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 2 255667889999999999998876 478999999999999
Q ss_pred HcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQI 273 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 273 (394)
+.|++++|..+|+++... |.+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998654 6678889999999999999999999999998764 45788999999999999999999999
Q ss_pred HHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 274 FTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++.+ |+.. +|..++.+|.+.|++++|.+.|+++.+..|.
T Consensus 396 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 396 FSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999863 345678999999999999999999999998865 5444 9999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 351 NPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
++.+|..++.+|.+.|++++|+++++++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.5e-32 Score=237.28 Aligned_cols=358 Identities=11% Similarity=0.014 Sum_probs=310.9
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCH
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRS 94 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~ 94 (394)
+...+.+.|++++|.+.+..+.+.. |.+...+..+...+.+.|++++|...++.... +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3456778999999999999988776 66677888888899999999999999988765 55778899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHH
Q 016128 95 EKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHV 174 (394)
Q Consensus 95 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 174 (394)
++|+..|+++.+... .+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999988632 256789999999999999999999999998764 334566778888899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh
Q 016128 175 IRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253 (394)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (394)
.+.. +.+..++..+...+...|++++|...|+++... |.+...|..+...+...|++++|+..+++..+... .+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHH
Confidence 8875 346788999999999999999999999997654 66677899999999999999999999999988642 35788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC 330 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~ 330 (394)
+..+...+...|++++|...++.+.+. .+.++.++..+...+.+.|++++|...|+++.+ |+.. ++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 889999999999999999999999863 344577899999999999999999999999876 6555 99999999999
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 331 HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.|++++|...++++.+..|+++.++..++.++.+.|++++|...++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998864
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.6e-31 Score=230.84 Aligned_cols=353 Identities=12% Similarity=0.070 Sum_probs=312.5
Q ss_pred CCC-hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHH
Q 016128 8 EPN-SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTM 84 (394)
Q Consensus 8 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 84 (394)
.|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|+..|+++.. +.+..+|..+
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 454 4566667777888999999999999998776 77889999999999999999999999999875 4456789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (394)
..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+.. +.+..+|..+..++...|++
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999987432 56677888999999999999999999998763 34678899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
++|...++++.+.+. .+...+..+...+...|++++|...|++.... |.++.++..+...+...|++++|+..|+++.
T Consensus 186 ~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999998763 46788999999999999999999999987554 6678889999999999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-h
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-V 320 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~ 320 (394)
+.+. .+..++..+...+.+.|++++|...++.+.+ ..+.+..++..+...+.+.|++++|...++++.+ |+.. +
T Consensus 265 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 265 ELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 8742 3577899999999999999999999999987 3466788999999999999999999999999987 6666 9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
+..++.++.+.|++++|...++++.+..|.++..+..++..+.+.|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999998887664
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.1e-33 Score=250.69 Aligned_cols=195 Identities=12% Similarity=0.098 Sum_probs=179.0
Q ss_pred CccccCCCCCh-HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC---------hhHHHHHHH
Q 016128 1 MKECLSDEPNS-VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC---------LPCAHNVFQ 70 (394)
Q Consensus 1 M~~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~ 70 (394)
|+++ ++.+++ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|+
T Consensus 16 ~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 16 AKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp ---------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred HHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence 3455 666554 46899999999999999999999999999999999999999999998765 688999999
Q ss_pred Hhcc---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 016128 71 ELKG---SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS 147 (394)
Q Consensus 71 ~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 147 (394)
+|.. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 9986 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016128 148 LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196 (394)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (394)
..||+.+|.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999988763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.5e-32 Score=242.64 Aligned_cols=200 Identities=9% Similarity=0.055 Sum_probs=173.3
Q ss_pred HHHHHHHhcc---C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---------HHH
Q 016128 65 AHNVFQELKG---S-RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM---------RFE 131 (394)
Q Consensus 65 A~~~~~~~~~---~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~---------~~~ 131 (394)
+..+.+++.. . .....++.+|++|++.|++++|+++|++|.+.|+.||..|||.||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3444455543 1 22345888899999999999999999999999999999999999999987654 688
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhc
Q 016128 132 AFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 132 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|..
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 016128 212 K--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA 264 (394)
Q Consensus 212 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (394)
. .||..+|+.||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 6 6788999999999999999999999999999999999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-28 Score=220.50 Aligned_cols=365 Identities=10% Similarity=-0.048 Sum_probs=313.6
Q ss_pred hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 11 SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 11 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
...+......+.+.|++++|.+.|+.+++.+ |+..++..+..++.+.|++++|+..|+++.. +.+..+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4567778888999999999999999999876 6899999999999999999999999999875 45677899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------------------------------------------------------
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKP--------------------------------------------------------- 111 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p--------------------------------------------------------- 111 (394)
.+.|++++|...|+++...+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999987764211
Q ss_pred ---------------------CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHH
Q 016128 112 ---------------------DPATWNSMISGFSQ---LGMRFEAFKLFEKMQS-----TGM--------VPSLKCVTSV 154 (394)
Q Consensus 112 ---------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~l 154 (394)
+...+......+.. .|++++|+..|+++.+ ... +.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 13333444444443 8999999999999987 311 2235677888
Q ss_pred HHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChh
Q 016128 155 LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYE 233 (394)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 233 (394)
..++...|++++|...++++.+.... ...+..+..++...|++++|...++++... |.+...+..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 89999999999999999999987644 888899999999999999999999997765 667888999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 234 SAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
+|+..++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988753 36678889999999999999999999999864 3445678899999999999999999999988
Q ss_pred CC--CCh-------hhHHHHHHHHHh---cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 314 PE--PTV-------SVYHSLLGACWC---HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 314 ~~--~~~-------~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.. |+. ..+..+..++.. .|++++|...++++.+..|.++.++..++.++.+.|++++|...++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 75 322 288899999999 999999999999999999999999999999999999999999999998875
Q ss_pred c
Q 016128 382 Q 382 (394)
Q Consensus 382 ~ 382 (394)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=7.1e-27 Score=209.92 Aligned_cols=339 Identities=13% Similarity=0.049 Sum_probs=265.4
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016128 30 GRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 30 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 107 (394)
+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.. +.+..+|..+...+...|++++|+..|+++.+.
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444444444 56777888888889999999999999988765 456778888888999999999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-H---HHHHHH------------HHHhhccchhhHHHHHH
Q 016128 108 GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS-L---KCVTSV------------LSACADLSALKLGKETH 171 (394)
Q Consensus 108 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---~~~~~l------------~~~~~~~~~~~~a~~~~ 171 (394)
+.. +..++..+..+|.+.|++++|...|+++.+.. |+ . ..+..+ ...+...|++++|...+
T Consensus 90 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 90 KMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 533 67888888899999999999999999888753 33 3 444444 44478889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 016128 172 GHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN 250 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (394)
+++.+.. +.+..++..++.+|...|++++|...|+++... |.++.+|..+...|...|++++|+..|+++.+... .+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 244 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DH 244 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Ch
Confidence 9998775 347888889999999999999999999987654 67788899999999999999999999999987632 23
Q ss_pred HhhHHHH------------HHHHHccCCHHHHHHHHHHchhcCCCCCC-----HhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 251 SASFVAV------------LSACGHAGHVDKALQIFTMMDDDFGLKPK-----QEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 251 ~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
...+..+ +..+...|++++|...|+.+.+. .|+ ...+..+...+.+.|++++|...++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444 78888999999999999999864 343 347788889999999999999999988
Q ss_pred CC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH------------HHhhcC-----CcccHHH
Q 016128 314 PE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN------------IYAGLG-----RWEDVGR 373 (394)
Q Consensus 314 ~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~ 373 (394)
.+ |+.. +|..++.+|...|++++|...++++.+..|.++..+..+.. .|...| +.+++.+
T Consensus 322 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 75 6655 99999999999999999999999999999999888888883 355555 4455666
Q ss_pred HHHH
Q 016128 374 IRQM 377 (394)
Q Consensus 374 ~~~~ 377 (394)
.+++
T Consensus 402 ~y~~ 405 (450)
T 2y4t_A 402 AYRK 405 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1.5e-26 Score=207.90 Aligned_cols=356 Identities=10% Similarity=0.001 Sum_probs=293.5
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHH
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIA 86 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~ 86 (394)
.+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..++...|++++|+..|+++.. +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 356778889999999999999999999999775 66899999999999999999999999999876 456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDP---ATWNSM------------ISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCV 151 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 151 (394)
.|.+.|++++|.+.|+++.+.... +. .++..+ ...+...|++++|+..|+++.+.. +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999999986322 33 555555 445889999999999999998764 4578889
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHH--------
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAM-------- 222 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l-------- 222 (394)
..+..++...|++++|.+.++++.+.. +.+..++..++.+|...|++++|...|+++... |.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875 347889999999999999999999999998655 5555656555
Q ss_pred ----HHHHhhcCChhhHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHH
Q 016128 223 ----ISGYGRNGEYESAVEIFDLMQQEKVKPN-----SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCM 293 (394)
Q Consensus 223 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (394)
...+...|++++|+..|+++.+.. |+ ...+..+...+.+.|++++|...++.+.+. .+.+...+..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 335 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 888999999999999999998863 44 347888899999999999999999998863 34468899999
Q ss_pred HHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH------------HHhcC-----CchHHHHHHHH-HHhhCCCCC
Q 016128 294 VDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA------------CWCHL-----NSDLGEEMAMK-LQEMEPENP 352 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~~ 352 (394)
..+|...|++++|...|+++.+ |+.. .+..+..+ |...| +.+++.+.+++ +.+..|++.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999976 7666 67666633 33344 56778888886 666666543
Q ss_pred c----------hHHHHHHHHhhcCCcccHH
Q 016128 353 T----------PFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 353 ~----------~~~~l~~~~~~~g~~~~a~ 372 (394)
. .+..+..+|...++.+++.
T Consensus 416 ~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 416 QNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2 4556666666666665543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.2e-25 Score=206.41 Aligned_cols=365 Identities=10% Similarity=0.018 Sum_probs=296.8
Q ss_pred hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 11 SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 11 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
...|..+...+.+.|++++|.+.|+.+++.. +.+..++..+..++.+.|++++|++.|+++.. +.+..++..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567788888999999999999999999887 67889999999999999999999999999875 55678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCC------------------------------------CCCHH------------------
Q 016128 89 MLNGRSEKAMELFEGLAHEGF------------------------------------KPDPA------------------ 114 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~------------------------------------~p~~~------------------ 114 (394)
...|++++|...|+.+....- .|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 999999999999964321110 01111
Q ss_pred ------------HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHhhccchhhHH
Q 016128 115 ------------TWNSMISGFSQ--------LGMRFEAFKLFEKMQSTGMVPS-------LKCVTSVLSACADLSALKLG 167 (394)
Q Consensus 115 ------------~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a 167 (394)
....+...+.. .|++++|+.+|+++.+... .+ ..++..+...+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11122222221 2478899999999987532 22 23466677788889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
...++.+.+.. |+...+..+...+...|++++|...+++.... |.++.+|..+...+...|++++|+..++++.+..
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999999875 45888889999999999999999999987654 6778889999999999999999999999998875
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-----
Q 016128 247 VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS----- 319 (394)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----- 319 (394)
. .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...|+++.+ |+..
T Consensus 341 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 P-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp T-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 3 35678889999999999999999999999874 345577889999999999999999999999865 2111
Q ss_pred --hHHHHHHHHHhc----------CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 320 --VYHSLLGACWCH----------LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 320 --~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.+.....++... |++++|...++++.+..|.++.++..++.++.+.|++++|.+.++++.+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 244455677777 999999999999999999999999999999999999999999999988754
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.6e-25 Score=200.87 Aligned_cols=347 Identities=12% Similarity=-0.019 Sum_probs=292.8
Q ss_pred CCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C-------
Q 016128 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SR-N------- 77 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~------- 77 (394)
..|+...|..+..++.+.|++++|.+.++.+++.+ +.+..++..+..++.+.|++++|...|+++.. .| +
T Consensus 35 ~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 113 (514)
T 2gw1_A 35 LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113 (514)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHH
T ss_pred cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHH
Confidence 35899999999999999999999999999999877 66788999999999999999999999998754 11 1
Q ss_pred ------------------------------------------------------------------------hhHHHHHH
Q 016128 78 ------------------------------------------------------------------------ILTWNTMI 85 (394)
Q Consensus 78 ------------------------------------------------------------------------~~~~~~ll 85 (394)
...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 22222333
Q ss_pred HHHHh---cCCHHHHHHHHHHHHh-----cCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 016128 86 AGMML---NGRSEKAMELFEGLAH-----EGFK--------PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149 (394)
Q Consensus 86 ~~~~~---~~~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 149 (394)
..+.. .|++++|...|+++.+ .... .+..++..+...+...|++++|...|+++.+.. |+..
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 271 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVN 271 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHH
Confidence 33333 8999999999999988 3111 245678889999999999999999999998864 3388
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhh
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGR 228 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~ 228 (394)
.+..+..++...|++++|...++.+.+... .+..++..+...+...|++++|...|++.... |.+...+..+...+..
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 889999999999999999999999988753 46778889999999999999999999997655 6677889999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHh---cC
Q 016128 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGR---SG 301 (394)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g 301 (394)
.|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999998864 336678889999999999999999999998764122222 3388899999999 99
Q ss_pred cHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 302 RLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 302 ~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
++++|...++++.+ |+.. ++..+..++...|++++|...++++.+..|.++..+..+
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999876 6656 899999999999999999999999999999888777665
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=2.3e-23 Score=181.01 Aligned_cols=313 Identities=12% Similarity=0.027 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 125 (394)
.+..+...+...|++++|+..|+++.. +.+..++..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 334444444444444444444444432 223344444444444555555555555544443211 34444445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CCHHHHHH------------HHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMV--PSLKCVTS------------VLSACADLSALKLGKETHGHVIRADLNKDESMATALIS 191 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~--~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 191 (394)
.|++++|...|++..+.... .+...+.. +...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 55555555555554443110 12222222 2456667777777777777777664 345677777777
Q ss_pred HHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH------------HHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV------------AVL 258 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~ 258 (394)
++...|++++|...+++.... |.++..+..+...+...|++++|...+++..+.... +...+. .+.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888776554 566777778888888888888888888887765322 233222 235
Q ss_pred HHHHccCCHHHHHHHHHHchhcCCCCCCH----hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc
Q 016128 259 SACGHAGHVDKALQIFTMMDDDFGLKPKQ----EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~ 331 (394)
..+...|++++|...++.+.+. . +.+. ..+..+...+.+.|++++|...+++..+ |+.. ++..+..++...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 6678888999999888888764 1 2222 2344567788888999999988888875 6555 888888889999
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
|++++|...++++.+..|.++..+..+..+....
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999998888887777765543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1.2e-22 Score=176.48 Aligned_cols=301 Identities=12% Similarity=0.095 Sum_probs=256.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
++..+..+...+...|++++|+..|+++.+.... +..++..+..++...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4567888899999999999999999999987433 68899999999999999999999999998764 336788999999
Q ss_pred HhhccchhhHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHHcCCchHHHHHHHHhhcC-CCChhhHHH
Q 016128 157 ACADLSALKLGKETHGHVIRADLN--KDESMATAL------------ISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNA 221 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 221 (394)
++...|++++|...++++.+.... .+...+..+ ...+...|++++|...++++... |.++..+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999887530 244444444 57889999999999999997654 677888999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHH----------
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG---------- 291 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 291 (394)
+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 447788999999999999999999999999864 223333332
Q ss_pred --HHHHHHHhcCcHHHHHHHHHhCCC--CChh-----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 292 --CMVDLLGRSGRLDEARELIRELPE--PTVS-----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 292 --~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
.+...+.+.|++++|...++++.+ |+.. .+..+..++...|++++|+..++++.+..|.++.++..++.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 236678999999999999998876 5543 3556778999999999999999999999999999999999999
Q ss_pred hhcCCcccHHHHHHHhhhcc
Q 016128 363 AGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~ 382 (394)
.+.|++++|...++++.+..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998754
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=4.3e-22 Score=182.83 Aligned_cols=342 Identities=11% Similarity=-0.003 Sum_probs=275.5
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChh---------
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNIL--------- 79 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 79 (394)
.+...|..+..++.+.|++++|.+.++.+++.+ +.+..++..+..++...|++++|+..|+.+...|+..
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 135 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 367889999999999999999999999999887 6688899999999999999999999997553222211
Q ss_pred ------------------------------------------------------------HHHHHHHHHH--------hc
Q 016128 80 ------------------------------------------------------------TWNTMIAGMM--------LN 91 (394)
Q Consensus 80 ------------------------------------------------------------~~~~ll~~~~--------~~ 91 (394)
....+...+. ..
T Consensus 136 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 215 (537)
T 3fp2_A 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215 (537)
T ss_dssp HHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1111111111 12
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh
Q 016128 92 GRSEKAMELFEGLAHEGFKPD-------PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (394)
|++++|..+++++.+.... + ..++..+...+...|++++|...|++..+. .|+...+..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 4789999999999886332 2 335777778889999999999999999886 45688899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
++|...++++.+... .+..++..+...+...|++++|...|++.... |.+...|..+...+...|++++|...++++.
T Consensus 293 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999988763 47888999999999999999999999997654 6677889999999999999999999999998
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCC----CCCCHhhHHHHHHHHHhc----------CcHHHHHHH
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFG----LKPKQEHFGCMVDLLGRS----------GRLDEAREL 309 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~ 309 (394)
+.. +.+...+..+...+...|++++|...++.+.+... .......+..+...+... |++++|...
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 874 33667888999999999999999999999875311 111222344556677777 999999999
Q ss_pred HHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 310 IRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 310 ~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
|++..+ |+.. ++..+..++...|++++|.+.|+++.+..|.++....
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999876 6666 9999999999999999999999999999998766544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.4e-22 Score=170.97 Aligned_cols=289 Identities=10% Similarity=-0.018 Sum_probs=157.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
+.+...+..+...+...|++++|+++|+++.. +.+...+..++..+...|++++|..+++++.+.... +..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 34445555555566666666666666665543 233444555555556666666666666666554222 445555555
Q ss_pred HHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 121 SGFSQLG-MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 121 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
..+...| ++++|...|++..+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 155 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------------------- 155 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---------------------
Confidence 5566666 5666666666555432 2233444455555555555555555555544443
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 200 SWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
|.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 156 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 156 -------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp -------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2233334444444445555555555555544432 12344444555555555555555555554443
Q ss_pred cC-------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 280 DF-------GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 280 ~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
.. ..+....++..+...|...|++++|...+++..+ |+.. .+..+..++...|++++|.+.++++.+..|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 10 0123345666666666666666666666666654 4444 677777777777777777777777777777
Q ss_pred CCCchHHHHHHHH-hhcCCc
Q 016128 350 ENPTPFVILSNIY-AGLGRW 368 (394)
Q Consensus 350 ~~~~~~~~l~~~~-~~~g~~ 368 (394)
.++..+..++.++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 7777777777766 344443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.7e-21 Score=166.06 Aligned_cols=285 Identities=9% Similarity=0.023 Sum_probs=207.3
Q ss_pred CCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHH
Q 016128 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNT 83 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 83 (394)
+.+.+...+..+...+...|++++|.++++.+.+.. +.+...+..++.++...|++++|..+++++.. +.+...|..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 355677788889999999999999999999999876 66777788888999999999999999999876 457788999
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 84 MIAGMMLNG-RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 84 ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
+...+...| ++++|...|++..+.... +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 999999999999987433 67789999999999999999999999998764 234456666777788888
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC----------CCChhhHHHHHHHHhhcCCh
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK----------PDDPAFWNAMISGYGRNGEY 232 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~ 232 (394)
++++|...++++.+.. +.+..++..+...+...|++++|...+++.... +.....+..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 8888888888877664 335666667777777777777777777665432 22344556666666666666
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
++|+..+++..+... .+...+..+...+...|++++|...+++..+. .+.+...+..+..++
T Consensus 253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 666666666655432 24455555555566666666666666655531 122344444444444
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=2.1e-19 Score=162.92 Aligned_cols=352 Identities=12% Similarity=-0.002 Sum_probs=298.1
Q ss_pred ChHHHHHHHHHhhh----hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh----cCChhHHHHHHHHhccCCChhHH
Q 016128 10 NSVTFISVISACAS----LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK----CGCLPCAHNVFQELKGSRNILTW 81 (394)
Q Consensus 10 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 81 (394)
+...+..+-..+.. .++++.|.+.|+...+.| ++..+..|...|.. .+++++|...|++.....+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666766 789999999999988765 66788889999998 89999999999998866788888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 016128 82 NTMIAGMML----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCVTS 153 (394)
Q Consensus 82 ~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 153 (394)
..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|++.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 888888888 889999999999998875 67788888888887 789999999999998875 5677888
Q ss_pred HHHHhhc----cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHH
Q 016128 154 VLSACAD----LSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISG 225 (394)
Q Consensus 154 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 225 (394)
+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|..+|++.... .++..+..+...
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~ 264 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 8888877 899999999999998875 56778888888887 78999999999997765 456677788888
Q ss_pred Hhh----cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-----CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH
Q 016128 226 YGR----NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA-----GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296 (394)
Q Consensus 226 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (394)
|.. .+++++|+..|++..+.| +...+..+...|... +++++|..+++...+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998765 566777788888776 8999999999999875 3 45677778888
Q ss_pred HHhcC---cHHHHHHHHHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh----
Q 016128 297 LGRSG---RLDEARELIRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG---- 364 (394)
Q Consensus 297 ~~~~g---~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 364 (394)
|...| ++++|.++|++..+.+.. .+..+...|.. .+++++|...|+++.+.+ ++.++..|+.+|.+
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87766 899999999998875555 88899999988 899999999999998865 57789999999998
Q ss_pred cCCcccHHHHHHHhhhccc
Q 016128 365 LGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~~ 383 (394)
.+++++|...+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988773
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=2.8e-22 Score=175.06 Aligned_cols=300 Identities=11% Similarity=-0.006 Sum_probs=195.5
Q ss_pred HhcCChhHHHH-HHHHhcc-C---C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH
Q 016128 57 LKCGCLPCAHN-VFQELKG-S---R--NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129 (394)
Q Consensus 57 ~~~g~~~~A~~-~~~~~~~-~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 129 (394)
.-.|++++|.. .|++... . | +...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34466666666 6664432 1 1 234455666666666666666666666666532 2555666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 130 FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.... +...+..+... .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~--------- 176 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A--------- 176 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h---------
Confidence 66666666665543 234555555555555566666666665555554321 11111000000 0
Q ss_pred hcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh
Q 016128 210 EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE 288 (394)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (394)
........+..+...+ ..|++++|+..++++.+..... +..++..+...+...|++++|...++.+.+. .+.+..
T Consensus 177 -~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 252 (368)
T 1fch_A 177 -GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYL 252 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred -hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHH
Confidence 0000000111233333 8889999999999988764321 4788888999999999999999999998763 344577
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC-----------Cch
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN-----------PTP 354 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~ 354 (394)
.+..+...+...|++++|...|+++.+ |+.. ++..+..++...|++++|...++++.+..|.+ ..+
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 888999999999999999999998876 6655 89999999999999999999999999988877 688
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 355 FVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 355 ~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
|..++.++...|++++|..++++..
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999999999887543
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.9e-20 Score=167.06 Aligned_cols=370 Identities=9% Similarity=-0.055 Sum_probs=227.5
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhh--------cCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc------
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIE--------KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG------ 74 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 74 (394)
.....|+.+...+...|++++|++.|++.++.. -+....+|+.+..+|...|++++|...+++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345678888888888888888888888766421 122356788888888888888888888876543
Q ss_pred C----CChhHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHhCCCC
Q 016128 75 S----RNILTWNTMIAGMMLN--GRSEKAMELFEGLAHEGFKPDPATWNSMISG---FSQLGMRFEAFKLFEKMQSTGMV 145 (394)
Q Consensus 75 ~----~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~ 145 (394)
. ....++..+..++... +++++|++.|++..+..+. ++..+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1234565555555443 4688888888888776332 45555555444 345567778888888777653 3
Q ss_pred CCHHHHHHHHHHh----hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHH
Q 016128 146 PSLKCVTSVLSAC----ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWN 220 (394)
Q Consensus 146 ~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~ 220 (394)
.+...+..+...+ ...+++++|.+.+++..... +.+..++..+...|...|++++|...+++.... |.+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 3455555444433 34567788888888887765 346777788888888888888888888886554 55666666
Q ss_pred HHHHHHhhc-------------------CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 221 AMISGYGRN-------------------GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 221 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
.+..+|... +..+.|...+++..+.. +.+..++..+...+...|++++|+..|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~- 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK- 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 666655322 23566777777776654 235567777888888888888888888887754
Q ss_pred CCCCCH--hhHHHHHH-HHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 282 GLKPKQ--EHFGCMVD-LLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 282 ~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
...+.. ..+..+.. .+...|++++|+..|++..+ |+....... ...+..++++..+.+|.++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 222211 12222222 23467888888888887665 443322221 23445667777788899999999
Q ss_pred HHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCC
Q 016128 357 ILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAG 392 (394)
Q Consensus 357 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 392 (394)
.++.+|...|++++|++.+++..+.+.......+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999877666677765
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=3.4e-19 Score=163.16 Aligned_cols=130 Identities=11% Similarity=0.070 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAGM 88 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~ 88 (394)
|...|..++.. .+.|+++.|..+|+.+++.. |.+...|..++..+.+.|++++|..+|++... .|+...|..++...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 56788888884 77899999999999999875 77888999999999999999999999999876 57777777777533
Q ss_pred -HhcCCHHHHHH----HHHHHHhc-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHh
Q 016128 89 -MLNGRSEKAME----LFEGLAHE-GFKP-DPATWNSMISGFSQ---------LGMRFEAFKLFEKMQS 141 (394)
Q Consensus 89 -~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~ 141 (394)
...|+.++|.+ +|+..... |..| +...|...+..... .|++++|..+|++..+
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 34577766655 77766553 5444 56677777776654 6788999999998887
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.5e-20 Score=163.97 Aligned_cols=287 Identities=15% Similarity=0.073 Sum_probs=182.7
Q ss_pred hhhHhHHHHHH-HHHHHHhhhc---CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHH
Q 016128 22 ASLLYLQFGRQ-VHGLTLKIEK---QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 22 ~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~ 95 (394)
...|+++.|.+ .++...+... ..+...+..+...+.+.|++++|+..|+++.. +.+..+|..+...+...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34567788887 7776554331 11356688899999999999999999999875 457788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHhhc
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTS---------------VLSACAD 160 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------l~~~~~~ 160 (394)
+|...|+++.+... .+..++..+...|...|++++|+..++++.+.... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999998753 37889999999999999999999999999876422 2111111 1222236
Q ss_pred cchhhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 161 LSALKLGKETHGHVIRADLNK-DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
.|++++|...++++.+..... +..++..+...|...|++++|...|++.... |.++..|..+...+...|++++|+..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666777777776666554221 4566666666666666666666666664432 44555666666666666666666666
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCC---------CCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGL---------KPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
|+++.+.. +.+...+..+...+...|++++|...++.+.+...- +....++..+..+|...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 66665543 224555666666666666666666666655432000 00134445555555555555555544
Q ss_pred HH
Q 016128 310 IR 311 (394)
Q Consensus 310 ~~ 311 (394)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=7.2e-21 Score=165.96 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=179.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
..+..+...+.+.|++++|+..|+++.+.... +..+|..+..+|...|++++|+..|++..+.. +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555556666666666666666666554322 45555666666666666666666666555432 22344444455555
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
...|++++|...++++.+.... +...+..+ ......+..+...+...|++++|+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPK-YKYLVKNK-----------------------KGSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHH-HHCC------------------------------------------CCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCcc-chHHHhhh-----------------------ccchHHHHHHHHHHhhhhhHHHHHHH
Confidence 5555555555555444432200 00000000 01122345567788889999999999
Q ss_pred HHHHHHcCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--
Q 016128 239 FDLMQQEKVK-PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-- 315 (394)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 315 (394)
++++.+.... ++..++..+...+...|++++|...++++.+. .+.+..++..+...|.+.|++++|...|+++.+
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999886432 15788888999999999999999999998863 345678899999999999999999999998876
Q ss_pred CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC------------CCchHHHHHHHHhhcCCcccHHHHHHH
Q 016128 316 PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE------------NPTPFVILSNIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 377 (394)
|+.. ++..+..++...|++++|...++++.++.|. +...|..+..++...|+.+.+.++.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 6666 8999999999999999999999999998765 367799999999999999988887765
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.3e-18 Score=156.05 Aligned_cols=335 Identities=9% Similarity=-0.048 Sum_probs=282.1
Q ss_pred ChHHHHHHHHHhhh----hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh----cCChhHHHHHHHHhccCCChhHH
Q 016128 10 NSVTFISVISACAS----LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK----CGCLPCAHNVFQELKGSRNILTW 81 (394)
Q Consensus 10 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 81 (394)
+...+..|-..+.. .+++++|.+.|+...+.| ++..+..|..+|.. .+++++|+..|++.....+...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 150 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQ 150 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566777777777 889999999999998765 66778888888988 78999999999998867788888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 016128 82 NTMIAGMML----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCVTS 153 (394)
Q Consensus 82 ~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 153 (394)
..+...|.. .+++++|++.|++..+.| +..++..+...|.. .+++++|+..|++..+.| +...+..
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 889988887 789999999999998874 78889999999988 899999999999998875 4567777
Q ss_pred HHHHhhc----cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHH
Q 016128 154 VLSACAD----LSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISG 225 (394)
Q Consensus 154 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 225 (394)
+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++.... .++..+..+...
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7777765 789999999999998875 56677778888888 89999999999998764 567778888888
Q ss_pred Hhhc-----CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC---CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 226 YGRN-----GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG---HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 226 ~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
|... +++++|+..|++..+.| +...+..+...|...| +.++|..+|+...+. .++..+..+...|
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNAL 373 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 8887 89999999999999875 5567777888877655 789999999999874 4677888899999
Q ss_pred Hh----cCcHHHHHHHHHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCC---CCchHHHHHHHHhh
Q 016128 298 GR----SGRLDEARELIRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPE---NPTPFVILSNIYAG 364 (394)
Q Consensus 298 ~~----~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 364 (394)
.. .+++++|..+|++..+.+.. .+..+...|.. .++.++|...|+++.+.+|. ++.....+..++..
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88 89999999999998875555 88889999988 89999999999999999954 66666666655543
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=9.2e-20 Score=153.01 Aligned_cols=269 Identities=12% Similarity=0.074 Sum_probs=196.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPD--PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+-....|++..|+..++..... .|+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 3344567777777776655443 222 23445566777777777777765533 1 34566667777777777777
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 164 LKLGKETHGHVIRADLNK-DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
.++|.+.++++...+..| +...+..+...+...|++++|.+.+++ |.++..+..++..+.+.|++++|.+.|+++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777777665333 566667777888888999999888887 578888889999999999999999999999
Q ss_pred HHcCCCCCHhhH---HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC
Q 016128 243 QQEKVKPNSASF---VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT 317 (394)
Q Consensus 243 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 317 (394)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|...|++..+ |+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8864 443211 12334444568999999999999874 456788899999999999999999999999876 77
Q ss_pred hh-hHHHHHHHHHhcCCchH-HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHH
Q 016128 318 VS-VYHSLLGACWCHLNSDL-GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 318 ~~-~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
.. ++..++..+...|+.++ +.++++++.+..|.++.+.. ...+.+.++++.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~ 285 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLV 285 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHH
Confidence 77 89999999999999876 57899999999998865433 344444444443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=1.1e-19 Score=158.55 Aligned_cols=265 Identities=14% Similarity=0.049 Sum_probs=208.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+...+..+...+.+.|++++|+..|+++.. +.+..+|..+...+...|++++|+..|+++.+... .+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 455688899999999999999999999875 56788899999999999999999999999998743 368899999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPS-----------LKCVTSVLSACADLSALKLGKETHGHVIRADLN-KDESMATALI 190 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 190 (394)
|...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998742 22 223344577888999999999999999887533 2688888899
Q ss_pred HHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH
Q 016128 191 SMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (394)
..|...|++++|...|++.... |.++.+|..+..+|...|++++|+..|+++.+.. +.+..++..+...|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999886554 6678889999999999999999999999988864 2357788888899999999999
Q ss_pred HHHHHHHchhcCCC--C--------CCHhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 270 ALQIFTMMDDDFGL--K--------PKQEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 270 a~~~~~~~~~~~~~--~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
|...++++.+...- . .+..++..+..++...|+.+.+..+.++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999888753100 0 12456777777777788877777776653
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=6.6e-21 Score=163.60 Aligned_cols=303 Identities=12% Similarity=0.070 Sum_probs=143.7
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFE 102 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 102 (394)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik---a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5577899999988872 335899999999999999999999976 3566789999999999999999999888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCC
Q 016128 103 GLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKD 182 (394)
Q Consensus 103 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 182 (394)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77764 4567888899999999999999888774 367779999999999999999999999976
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... +..++.-...++..|.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 218 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHH
Confidence 35888999999999999999999988 3788899999999999999999655443 2234444557888899
Q ss_pred ccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh--cCcHHHHHHHHHhCCC-CC-------hhhHHHHHHHHHhcC
Q 016128 263 HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR--SGRLDEARELIRELPE-PT-------VSVYHSLLGACWCHL 332 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~-~~-------~~~~~~l~~~~~~~g 332 (394)
+.|.+++|..+++..... . +-...+|+.|..+|.+ .++..+.++.|..-.. |. ...|..+...|...+
T Consensus 219 k~G~~eEai~lLe~aL~l-e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 219 DRGYFEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HTTCHHHHHHHHHHHTTS-T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999988743 2 4456677777777765 4566677777766555 33 238888999999999
Q ss_pred CchHHHHHHHHHHhh------------CCCCCchHHHHHHHHh
Q 016128 333 NSDLGEEMAMKLQEM------------EPENPTPFVILSNIYA 363 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~ 363 (394)
+++.|....-.-... .+.|...|...+..|.
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 999887654332211 3556666666666555
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=2e-21 Score=166.77 Aligned_cols=281 Identities=12% Similarity=0.111 Sum_probs=138.4
Q ss_pred hcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 016128 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFE 137 (394)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 137 (394)
+.|++++|.+.++++. .| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~~-~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996 44 48999999999999999999999653 588899999999999999999999777
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChh
Q 016128 138 KMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPA 217 (394)
Q Consensus 138 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 217 (394)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..++..|...|++++|..+|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------- 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 149 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------
Confidence 76663 4567889999999999999999988875 3677799999999999999999999999873
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
.|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ ...+.....++..|
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYY 217 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHH
Confidence 5999999999999999999999998 27899999999999999999996544432 23445566799999
Q ss_pred HhcCcHHHHHHHHHhCCCC--Chh-hHHHHHHHHHhc--CCchHHHHHHHHHHhhCC-----CCCchHHHHHHHHhhcCC
Q 016128 298 GRSGRLDEARELIRELPEP--TVS-VYHSLLGACWCH--LNSDLGEEMAMKLQEMEP-----ENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~ 367 (394)
.+.|++++|..+++....- ... .|+.+..++++- ++..+.++.|..-..+.| .+...|..++..|.+-++
T Consensus 218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999999999999999873 333 888888888765 344444454444344446 688999999999999999
Q ss_pred cccHHHHH
Q 016128 368 WEDVGRIR 375 (394)
Q Consensus 368 ~~~a~~~~ 375 (394)
++.|...+
T Consensus 298 ~d~A~~tm 305 (449)
T 1b89_A 298 YDNAIITM 305 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987643
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=4.3e-20 Score=158.30 Aligned_cols=276 Identities=9% Similarity=0.001 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
..+..+...+...|++++|..+|+++.+.... +..++..+..++...|++++|...++++.+.. +.+..++..+..++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34556666677777777777777777665322 56666666777777777777777777666542 23445555555555
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHH-HH-HHhhcCChhhHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM-IS-GYGRNGEYESAV 236 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~ 236 (394)
...|++++|.+.++++.+.... +...+..+.... ++......+ .. .+...|++++|.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD--------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC----------------------------------------CCTTSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH--------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 5555666665555555544321 111111110000 000011112 22 377788899999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
..++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++.+
T Consensus 159 ~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999887643 36788888889999999999999999988763 344577888899999999999999999998875
Q ss_pred -CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC------------CCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 316 -PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE------------NPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 316 -~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
|+.. ++..+..++...|++++|.+.++++.+..|. ++..+..++.++.+.|++++|..++++..+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6555 8999999999999999999999999999988 678899999999999999999999876654
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=7.8e-18 Score=154.12 Aligned_cols=342 Identities=11% Similarity=0.072 Sum_probs=249.6
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 016128 34 HGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKP 111 (394)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 111 (394)
++..++.. |-+...|..++. +.+.|++++|..+|+++.. +.+...|..++..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44555554 668889999998 4789999999999999876 456778999999999999999999999999987 46
Q ss_pred CHHHHHHHHHHH-HccCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHhhc---------cchhhHHHHHHHHHH
Q 016128 112 DPATWNSMISGF-SQLGMRFEAFK----LFEKMQST-GMVP-SLKCVTSVLSACAD---------LSALKLGKETHGHVI 175 (394)
Q Consensus 112 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~m~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 175 (394)
+...|...+... ...|+.++|.+ +|++.... |..| +...|...+..... .|+++.|..+|++.+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 888887777533 45677776655 77766543 5444 45667666665543 688889999988887
Q ss_pred HcCCCCCHHHHHHHHHH---------------------------------------------------------------
Q 016128 176 RADLNKDESMATALISM--------------------------------------------------------------- 192 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~--------------------------------------------------------------- 192 (394)
+.........|......
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 73211112222211110
Q ss_pred --HHHc----CCc----hHHHHHHHHhhcC-CCChhhHHHHHHHHhh-------cCChh-------hHHHHHHHHHHcCC
Q 016128 193 --YMKC----GQP----SWARRFFDQFEIK-PDDPAFWNAMISGYGR-------NGEYE-------SAVEIFDLMQQEKV 247 (394)
Q Consensus 193 --~~~~----g~~----~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~ 247 (394)
.... ++. +++..+|++.... |.++..|..++..+.+ .|+++ +|..+|++..+.-.
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 0000 011 1344455554333 5667778777777775 68887 89999999886322
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-H-hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHH
Q 016128 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-Q-EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYH 322 (394)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~ 322 (394)
+.+...+..++..+.+.|++++|..+|+.+.+. .|+ . ..|..++..+.+.|++++|..+|++..+ |... .|.
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 394 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence 335778888889999999999999999999863 443 3 4788888888899999999999999876 3322 333
Q ss_pred HHHHH-HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 323 SLLGA-CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 323 ~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..+.. +...|+.++|..+|+++.+..|.++..+..++..+.+.|+.++|..+|++....+
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 32222 3358999999999999999999999999999999999999999999999988764
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=8.9e-19 Score=150.08 Aligned_cols=265 Identities=11% Similarity=0.010 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
...+..+...+...|++++|..+|+++.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 34455566666777777777777776654 34556666677777777777777777777766532 2566777777777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HhhccchhhHHHHHHHHHHHcCCCCCHHHHHH
Q 016128 124 SQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV--------------LS-ACADLSALKLGKETHGHVIRADLNKDESMATA 188 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 188 (394)
...|++++|+..++++.+.... +...+..+ .. .+...|++++|...++++.+... .+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 7777777777777777654211 11122221 22 37788899999999998887753 36788888
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHV 267 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (394)
+...+...|++++|...+++.... |.++..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 888889999999999988886554 5667778888888888999999999998887764 33577788888888888888
Q ss_pred HHHHHHHHHchhcCCCCC-----------CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 268 DKALQIFTMMDDDFGLKP-----------KQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
++|...++.+.+. .... +...+..+..++.+.|++++|..++++..+
T Consensus 257 ~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888887653 1111 356777788888888888888888876653
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1e-18 Score=146.72 Aligned_cols=276 Identities=11% Similarity=0.088 Sum_probs=169.0
Q ss_pred HHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHH
Q 016128 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 98 (394)
+.....|+++.|+...+........+.......+.++|...|+++.|+..++... +|+..++..+...+...++.++|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~-~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS-APELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTS-CHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccC-ChhHHHHHHHHHHHcCCCcHHHHH
Confidence 3445567777777776655433312223344556677777777777777665542 556666777777777777777777
Q ss_pred HHHHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 99 ELFEGLAHEGFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 99 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++.+.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 7777777665444 455566666777777777777777765 345666777777777777777777777777666
Q ss_pred CCCCCHHHH---HHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh
Q 016128 178 DLNKDESMA---TALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253 (394)
Q Consensus 178 ~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (394)
. |+.... ...+..+...|++++|..+|+++... |.++..++.+..++.+.|++++|+..|++..+.. +-+..+
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 4 332111 11223333346677777777776543 5566667777777777777777777777766653 225566
Q ss_pred HHHHHHHHHccCCHHH-HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 016128 254 FVAVLSACGHAGHVDK-ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 310 (394)
+..++..+...|+.++ +.++++++.+. .|+... +.....+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 6667766666676654 45666666542 333222 223344555555554433
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=173.41 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 016128 78 ILTWNTMIAGMMLNGRSEKAMELFEGLAH---EGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV 154 (394)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 154 (394)
..+||+||++|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35799999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-------CCChhhHHHHHHHH
Q 016128 155 LSACADLSAL-KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-------PDDPAFWNAMISGY 226 (394)
Q Consensus 155 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~~ 226 (394)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+. .+++..+++... ++...+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999984 78999999999999999999999988766654 334444444222 11233445666667
Q ss_pred hhcC
Q 016128 227 GRNG 230 (394)
Q Consensus 227 ~~~~ 230 (394)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7655
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=168.10 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG------SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS 118 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 118 (394)
-..+|+++|++|++.|++++|.++|++|.. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988652 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 016128 119 MISGFSQLGMR-FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKD------ESMATALIS 191 (394)
Q Consensus 119 l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 191 (394)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.+ +++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 789999999999999999999998886554433 33333333 2233332 334445566
Q ss_pred HHHHcC
Q 016128 192 MYMKCG 197 (394)
Q Consensus 192 ~~~~~g 197 (394)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.9e-18 Score=139.73 Aligned_cols=227 Identities=10% Similarity=-0.026 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM--VPSLKCVTSVLS 156 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~ 156 (394)
..|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|+..+++..+... .|+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 345555555555566666666655555554 4555555555555555555555555555543210 01100
Q ss_pred HhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHH
Q 016128 157 ACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAV 236 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (394)
....++..+...+...|++++|...|++.....++. ..+...|++++|.
T Consensus 77 ------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 77 ------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHH
Confidence 002333334444444444444444444433322221 1233334444555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
..++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++..+
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5555444431 112334444444555555555555555555432 122344455555555555555555555555443
Q ss_pred -CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 316 -PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 316 -~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
|+.. .|..+..++...|++++|...++++.+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 3333 55555566666666666666666666555
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.3e-17 Score=137.72 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=177.5
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC-------hhhHH
Q 016128 149 KCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDD-------PAFWN 220 (394)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-------~~~~~ 220 (394)
..+..+...+...|++++|...++++.+.. .+..++..+..++...|++++|...+++.... |.+ +..+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666666655 45666666777777777777777777765443 111 56789
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (394)
.+...+...|++++|+..|++..+.. |+. ..+...|++++|...++.+... .+.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHh
Confidence 99999999999999999999998863 443 3466678899999999998863 334567788899999999
Q ss_pred CcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHH
Q 016128 301 GRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 301 g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 377 (394)
|++++|...+++..+ |+.. ++..+..++...|++++|+..++++.+..|.++..+..++.++.+.|++++|...+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999876 6655 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 016128 378 INDRQ 382 (394)
Q Consensus 378 m~~~~ 382 (394)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87654
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.3e-16 Score=144.00 Aligned_cols=335 Identities=11% Similarity=-0.054 Sum_probs=221.4
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhc-------CCchHHHHHHHHHHHhc--CChhHHHHHHHHhcc-CC-Ch
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEK-------QSDTMIGTALVDMYLKC--GCLPCAHNVFQELKG-SR-NI 78 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~-~~-~~ 78 (394)
...+|+.+..+|...|++++|...+++..+... .....++..+..++... +++++|+..|++... .| +.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 346899999999999999999999998876421 12345666666666654 479999999999875 34 45
Q ss_pred hHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 016128 79 LTWNTMIAG---MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCV 151 (394)
Q Consensus 79 ~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 151 (394)
..+..+... +...++.++|++.+++..+.... +..++..+...+.. .|++++|.+.+++..... +.+...+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 555555544 34567888999999988876432 56667666655544 467889999999988764 4567788
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------------------CCchHHHHHHHHhhc-
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC-------------------GQPSWARRFFDQFEI- 211 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~- 211 (394)
..+...+...|++++|...++++.+... .+..++..+..+|... +..+.|...+++...
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999988763 3677777777666432 235667777777544
Q ss_pred CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh--hHHHHHH-HHHccCCHHHHHHHHHHchhcCCCCCCHh
Q 016128 212 KPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA--SFVAVLS-ACGHAGHVDKALQIFTMMDDDFGLKPKQE 288 (394)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (394)
.|.+...+..+...+...|++++|+..|++..+....+... .+..+.. .....|++++|+..|++..+ +.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccH
Confidence 36677789999999999999999999999998865443321 2223332 23567999999999999885 345543
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (394)
.... ....+.++++...+ |+.. +|..+..++...|++++|++.|+++++.+|.+|.+...++
T Consensus 407 ~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 407 EKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3222 22333444444433 6666 9999999999999999999999999999998888776554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.7e-17 Score=133.13 Aligned_cols=198 Identities=14% Similarity=0.051 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 180 NKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
+++...+..+...+.+.|++++|...|++.... |.++..+..+...+.+.|++++|+..+++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 345666777888888888888888888886554 66777788888888888888888888888887642 3567777888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHH
Q 016128 259 SACGHA-----------GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLL 325 (394)
Q Consensus 259 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~ 325 (394)
..+... |++++|+..+++..+. -+.+...+..+...+...|++++|+..|++..+ .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999998863 234567888888999999999999999988765 3333888999
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.++...|++++|+..|+++.+..|.++..+..++.++.+.|++++|+..+++...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999987653
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=1.7e-16 Score=141.80 Aligned_cols=345 Identities=9% Similarity=0.014 Sum_probs=213.9
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCCh---hHHHHHHHHhccCCChhHHHHHHHHHHhcC-
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCL---PCAHNVFQELKGSRNILTWNTMIAGMMLNG- 92 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~- 92 (394)
+...+.+.|++++|.++|+...+.| +...+..+..+|...|+. ++|...|++.... +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCC
Confidence 5667788999999999999998876 344455666777778888 9999999998844 7777777877566555
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh
Q 016128 93 ----RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF---EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 93 ----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
++++|+..|++..+.|.. ..+..|...|...+..+ ++.+.+......|. ......+...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 789999999999987643 26667777777655433 34555555554443 234555566666656444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHhhcC-CCChhhHHHHHHHHhhc----CChhhHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCG---QPSWARRFFDQFEIK-PDDPAFWNAMISGYGRN----GEYESAVE 237 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~----~~~~~a~~ 237 (394)
++......+.+.-...++..+..|...|...| +.++|...|++.... +.+...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44333222222211223336677777888888 778888888876554 34444446666666554 67888888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHH-H--HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC-----cHHHHHHH
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSA-C--GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG-----RLDEAREL 309 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~ 309 (394)
.|++.. .| +...+..+... + ...+++++|..+|++..+. | ++..+..|...|. .| ++++|..+
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 888877 33 44555556555 3 4578888888888887764 4 5666667777666 44 88888888
Q ss_pred HHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh----cCCcccHHHHHHHhhh
Q 016128 310 IRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG----LGRWEDVGRIRQMIND 380 (394)
Q Consensus 310 ~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 380 (394)
|++.. ++.. .+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..++++|..+++...+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 88888 6666 77777766665 337888888888876643 56677777777764 3477778888887776
Q ss_pred ccc
Q 016128 381 RQL 383 (394)
Q Consensus 381 ~~~ 383 (394)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.3e-15 Score=146.01 Aligned_cols=313 Identities=12% Similarity=0.093 Sum_probs=225.2
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHH
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEK 96 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 96 (394)
+...|...|.+++|.++|++... .....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCHHH
Confidence 45556667777777777776421 111122222 25677788887777664 46677788888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 016128 97 AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIR 176 (394)
Q Consensus 97 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (394)
|++.|.+. -|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.++++....+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 88888653 377788888888888888888888888766643 33333335788888888777544332 1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHH
Q 016128 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (394)
.++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. .+..+|..
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 335556667888888888888888888775 35888888888888888888888876 25678888
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc--
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH-- 331 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~-- 331 (394)
+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.... +... .|+.+...+++.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 888888888888887765432 34566778899999999999999999988876 3333 777777777664
Q ss_pred CCchHHHHHHHHHHhhCC-----CCCchHHHHHHHHhhcCCcccHHHH
Q 016128 332 LNSDLGEEMAMKLQEMEP-----ENPTPFVILSNIYAGLGRWEDVGRI 374 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~ 374 (394)
++..++.+.|..-..+.| .+...|..++..|.+.|+++.|...
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 455555666655444444 5777899999999999999998843
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=3e-15 Score=143.53 Aligned_cols=324 Identities=13% Similarity=0.056 Sum_probs=191.6
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhh--cCCchHHHHHHHHHHHh---------------------------cCCh
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIE--KQSDTMIGTALVDMYLK---------------------------CGCL 62 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---------------------------~g~~ 62 (394)
.--...+++|...|.+.+|+++++.+.-.+ +..+...-+.++.+..+ .|.+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 334567788888999999999999888432 11233444445544433 3444
Q ss_pred hHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 63 PCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++...|++++|++.|.+.
T Consensus 1066 EEAf~IYkKa~--~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD--VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHHHHcC--CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 44444444432 11111111111 344455555555433 14556666666666666666666666442
Q ss_pred CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHH
Q 016128 143 GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM 222 (394)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 222 (394)
-|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+. . .++...|..+
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-GPNNAHIQQV 1201 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-CCCHHHHHHH
Confidence 245556666666666666666666666655543 22222334666666666665433332 1 2344445556
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc
Q 016128 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302 (394)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (394)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..+|...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 66666667777777666663 256666666666677776666666552 34566666666666677
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc--CCcccHHHHHH
Q 016128 303 LDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL--GRWEDVGRIRQ 376 (394)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 376 (394)
+..|......+. .+...+..++..|.+.|.+++|+.+++....++|.+...|..++.++.+- ++..++.++|.
T Consensus 1266 f~LA~~cgl~Ii-v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1266 FRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHhhh-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 766666655432 22235557777888888899999999888888888888887777777753 34444444443
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.76 E-value=8.5e-17 Score=134.17 Aligned_cols=242 Identities=10% Similarity=-0.071 Sum_probs=170.2
Q ss_pred ccCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH
Q 016128 125 QLGMRFEAFKLFEKMQSTGM---VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW 201 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (394)
..|++++|+..|+++.+... +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34566666666666665421 1134455666666666677777777777666654 2356777777778888888888
Q ss_pred HHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 202 ARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 202 a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
|...|++.... |.++..+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888776553 5567778888888888888888888888888753 44444444445556678899999998777663
Q ss_pred CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C----Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 281 FGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P----TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
.+++...+ .++..+...++.++|...+++... | +.. ++..+..++...|++++|...++++.+..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23333333 467777788888899999988877 2 223 8888999999999999999999999999887754
Q ss_pred hHHHHHHHHhhcCCcccHHHHH
Q 016128 354 PFVILSNIYAGLGRWEDVGRIR 375 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~ 375 (394)
. ...++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 366777888888888766
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=8e-17 Score=134.16 Aligned_cols=246 Identities=13% Similarity=0.038 Sum_probs=130.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHh
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP--SLKCVTSVLSAC 158 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~ 158 (394)
+......+...|++++|+..|++..+.... +...+..+..+|...|++++|+..+++..+.+..| ....|..+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 444556666667777777777766665322 34466666666666677777776666666532111 122345555555
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVE 237 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (394)
...|++++|...+++..+... .+..++..+...|...|++++|...|++.... |.++..|..+...+...+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 23344444555555555555555555544332 3333444444412222234444444
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc---HHHHHHHHHhCC
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR---LDEARELIRELP 314 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 314 (394)
.|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 164 ~~~~a~~~~-------------------------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLELK-------------------------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHS-------------------------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHhC-------------------------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 444444432 1223333344444444443 333333333332
Q ss_pred C-----CC-----h-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 315 E-----PT-----V-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 315 ~-----~~-----~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
+ |+ . .+|..+...+...|++++|.+.++++.+.+|.++.+...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 2 21 1 26777888888899999999999999999998888877776655543
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=1.6e-16 Score=127.50 Aligned_cols=197 Identities=13% Similarity=0.068 Sum_probs=108.9
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
|++...+..+...+.+.|++++|+..|++... +.+...+..+...+.+.|++++|+..|++..+..+. +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 34455555555556666666666666665543 334455555556666666666666666665554322 455555556
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHH
Q 016128 121 SGFSQL-----------GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL 189 (394)
Q Consensus 121 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 189 (394)
..+... |++++|+..|++..+.. +-+...+..+..++...|++++|...+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666665 66666666666666542 2245556666666666666666666666666665 456666666
Q ss_pred HHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
..+|...|++++|...|++.... |.++..+..+...+...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 67777777777777777665443 5556666667777777777777777666543
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=6.1e-16 Score=134.13 Aligned_cols=245 Identities=12% Similarity=0.079 Sum_probs=132.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA-LKLGKETHGHVIRADLNKDESMATALISMY 193 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (394)
+|..+...+.+.|++++|+..|++.++.. +-+...|..+..++...|+ +++|...++++++... .+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 34444444555555555555555554432 2234444444555555553 5555555555554432 2445555555555
Q ss_pred HHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-cCCHHHH-
Q 016128 194 MKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH-AGHVDKA- 270 (394)
Q Consensus 194 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a- 270 (394)
...|++++|+..|+++... |.+...|..+..++...|++++|+..++++.+.... +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHH
Confidence 5555555555555554332 445555555555566666666666666665554322 44555555555555 3333444
Q ss_pred ----HHHHHHchhcCCCCCCHhhHHHHHHHHHhcC--cHHHHHHHHHhCCC-CChh-hHHHHHHHHHhcC--------C-
Q 016128 271 ----LQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG--RLDEARELIRELPE-PTVS-VYHSLLGACWCHL--------N- 333 (394)
Q Consensus 271 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~-~~~~-~~~~l~~~~~~~g--------~- 333 (394)
+..++..... -+-+...|..+...+...| ++++|.+.++++.. |+.. .+..++.++.+.| +
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 3555555432 1223455566666666655 46666666666521 4444 6666666666653 2
Q ss_pred chHHHHHHHHH-HhhCCCCCchHHHHHHHHhh
Q 016128 334 SDLGEEMAMKL-QEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 334 ~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 364 (394)
.++|+++++++ .+.+|.....|..++..+..
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 47777888887 77777777777777665553
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=4.4e-15 Score=123.71 Aligned_cols=226 Identities=13% Similarity=0.001 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cchhhHHHHHHHHHHHcCCCCCHHHHH
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD----LSALKLGKETHGHVIRADLNKDESMAT 187 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 187 (394)
++.++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677778888888888888888888887732 45566777777777 888888888888887765 667777
Q ss_pred HHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHhhHHHHHH
Q 016128 188 ALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGR----NGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259 (394)
Q Consensus 188 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (394)
.+...|.. .+++++|...|++.... .++..+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 77777777 78888888888776654 366667777777777 778888888887777754 4556666666
Q ss_pred HHHc----cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHhCCCCChh-hHHHHHHHHHh
Q 016128 260 ACGH----AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR----SGRLDEARELIRELPEPTVS-VYHSLLGACWC 330 (394)
Q Consensus 260 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~ 330 (394)
.+.. .+++++|...++...+. + ++..+..+...|.. .+++++|...|++..+.+.. .+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 7766 77777777777777654 2 45566666677777 77777777777766553333 66666666666
Q ss_pred ----cCCchHHHHHHHHHHhhCCCC
Q 016128 331 ----HLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 331 ----~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.+++++|...++++.+.+|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 677777777777777776643
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=7.1e-16 Score=128.37 Aligned_cols=228 Identities=10% Similarity=-0.026 Sum_probs=176.0
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh----HHHHHHHH
Q 016128 151 VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF----WNAMISGY 226 (394)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~l~~~~ 226 (394)
+......+...|++++|...++++.+... .+...+..+..+|...|++++|...+++....+.++.. |..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34445556666666666666666665542 23446666777888888888888888887665444333 78888899
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 016128 227 GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (394)
...|++++|+..|++..+... .+...+..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888643 36678889999999999999999999998863 344566777777344445699999
Q ss_pred HHHHHhCCC--CChh-hHHHHHHHHHhcCC---chHHHHHHHHHHhhC---CCC-----CchHHHHHHHHhhcCCcccHH
Q 016128 307 RELIRELPE--PTVS-VYHSLLGACWCHLN---SDLGEEMAMKLQEME---PEN-----PTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 307 ~~~~~~~~~--~~~~-~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~a~ 372 (394)
...|+++.+ |+.. .+..+..++...|+ +++|...++++.+.. |.. ..++..++..|.+.|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999887 6655 88888888888888 889999999999875 332 257888999999999999999
Q ss_pred HHHHHhhhcc
Q 016128 373 RIRQMINDRQ 382 (394)
Q Consensus 373 ~~~~~m~~~~ 382 (394)
..++++.+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=1.4e-15 Score=125.01 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=89.5
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcC
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNG 230 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 230 (394)
..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++... |.+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333333444444444444444443332 123344444444444444444444444443322 233444444444455555
Q ss_pred ChhhHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
++++|.+.++++.+.+..| +...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555444421122 2334444444455555555555555554432 122344444455555555555555555
Q ss_pred HHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 310 IRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 310 ~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
++++.+ |+.. .+..+...+...|+.++|.+.++++.+..|.++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 554433 3222 444455555555555555555555555555443
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=1.8e-16 Score=129.67 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=113.0
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhh
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGR 228 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~ 228 (394)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.... +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 33344444444455555555555444432 223445555555555555555555555554332 3445555666666666
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 016128 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308 (394)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (394)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|..
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665543 224555666666666666666666666666542 23345556666666666666666666
Q ss_pred HHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 309 LIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 309 ~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
.++++.+ |+.. ++..+..++...|++++|...++++.+..|.++..+..+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6666554 4434 667777777777777777777777777777766666555443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=1e-15 Score=125.90 Aligned_cols=198 Identities=10% Similarity=0.003 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
...+..+...+...|++++|...|+++... |.+...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 566788889999999999999999987654 66788899999999999999999999999988743 3678889999999
Q ss_pred HccCCHHHHHHHHHHchhcCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
...|++++|..+++.+.+. +..| +...+..+...+...|++++|...+++..+ |+.. .+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3445 456788899999999999999999999876 5555 899999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
...++++.+..|.++..+..++..+...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=2.9e-16 Score=128.38 Aligned_cols=199 Identities=12% Similarity=0.003 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHH
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (394)
.....+..+...+...|++++|...|+++... |.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 35567777888999999999999999998765 6678889999999999999999999999998874 337788899999
Q ss_pred HHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchH
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDL 336 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~ 336 (394)
.+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++.+ |+.. .+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 345678889999999999999999999999876 5555 89999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 337 GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
|...++++.+..|.++.++..++.++.+.|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999998754
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=3.3e-14 Score=118.42 Aligned_cols=224 Identities=9% Similarity=-0.069 Sum_probs=128.3
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh----cCChhHHHHHHHHhccCCChhHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK----CGCLPCAHNVFQELKGSRNILTWNTMI 85 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ll 85 (394)
+..++..+...+...|++++|.+.|+...+ +.+...+..+...|.. .+++++|...|++.....+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344555555566666666666666666655 2234555556666666 666666666666655444555566666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 016128 86 AGMML----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSA 157 (394)
Q Consensus 86 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 157 (394)
..|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666 666666666666665543 55556666666665 666666666666665543 33444455555
Q ss_pred hhc----cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHHHhh-
Q 016128 158 CAD----LSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGR- 228 (394)
Q Consensus 158 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~- 228 (394)
+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..... ++..+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 554 556666666666655543 34455555555555 566666666665554432 24445555555555
Q ss_pred ---cCChhhHHHHHHHHHHcC
Q 016128 229 ---NGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 229 ---~~~~~~a~~~~~~~~~~~ 246 (394)
.+++++|.+.|++..+.|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHcC
Confidence 556666666666555543
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=8e-16 Score=128.22 Aligned_cols=116 Identities=11% Similarity=-0.110 Sum_probs=56.2
Q ss_pred CChhHHHHHHHHhccC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 016128 60 GCLPCAHNVFQELKGS------RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAF 133 (394)
Q Consensus 60 g~~~~A~~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 133 (394)
|++++|+..|+++... .+..+|..+...+...|++++|...|++..+.... +..+|..+...|...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4555555555554431 12334445555555555555555555555544221 3445555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 134 KLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 134 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
..|++..+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555554432 123344444444455555555555555554443
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=1e-14 Score=126.39 Aligned_cols=226 Identities=9% Similarity=0.094 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGR-SEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
..|..+..++.+.|++++|+..|+++.. +.+...|+.+..++...|+ +++|+..|++..+.... +...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4555566666666666666666666554 3345556666666666664 66666666666665333 556666666666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCchHH
Q 016128 124 SQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK-CGQPSWA 202 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a 202 (394)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|...++++++.+. .+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 66666666666666666543 22455566666666666666666666666665542 245555556666655 3443555
Q ss_pred -----HHHHHHhhc-CCCChhhHHHHHHHHhhcC--ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC---------
Q 016128 203 -----RRFFDQFEI-KPDDPAFWNAMISGYGRNG--EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG--------- 265 (394)
Q Consensus 203 -----~~~~~~~~~-~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 265 (394)
+..|++... .|.+...|+.+...+...| ++++|++.+.++ +. ...+...+..++..|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 244444322 2445555555555555555 455555555555 22 1223444555555555442
Q ss_pred CHHHHHHHHHHc
Q 016128 266 HVDKALQIFTMM 277 (394)
Q Consensus 266 ~~~~a~~~~~~~ 277 (394)
..++|.++++.+
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 135555555555
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=3.6e-15 Score=120.23 Aligned_cols=168 Identities=13% Similarity=-0.017 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhc-CChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHH
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRN-GEYESAVEIFDLMQQEKVKPN-SASFVAVLSAC 261 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 261 (394)
.+..+...+...|++++|...+++.... |.+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 3333444444444444444444443222 23334444444444444 555555555544444111121 23444444444
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C-Chh-hHHHHHHHHHhcCCchHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P-TVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~a 337 (394)
...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++.+ | +.. .+..+...+...|+.+.+
T Consensus 124 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 5555555555555544432 122234444444455555555555555544443 3 333 444444444555555555
Q ss_pred HHHHHHHHhhCCCCCch
Q 016128 338 EEMAMKLQEMEPENPTP 354 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~ 354 (394)
..+++.+.+..|.++..
T Consensus 202 ~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 55555555555544433
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=8.8e-16 Score=137.16 Aligned_cols=346 Identities=8% Similarity=-0.025 Sum_probs=236.3
Q ss_pred HHHHhhhhHhH---HHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC-----ChhHHHHHHHHhccCCChhHHHHHHHHH
Q 016128 17 VISACASLLYL---QFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG-----CLPCAHNVFQELKGSRNILTWNTMIAGM 88 (394)
Q Consensus 17 ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~ll~~~ 88 (394)
|-..+...|+. ++|.+.|+...+. ++..+..+..++...+ +.++|...|++.....+...+..|...|
T Consensus 41 Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 116 (452)
T 3e4b_A 41 LADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLY 116 (452)
T ss_dssp CC--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444556777 8999999988854 5555666776555555 7889999999987665666888888888
Q ss_pred HhcCCHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc---
Q 016128 89 MLNGRSEK---AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS--- 162 (394)
Q Consensus 89 ~~~~~~~~---a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--- 162 (394)
...+..++ +.+.+......| ++..+..+...|...+.++++......+.+.-...++..+..+...|...|
T Consensus 117 ~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~ 193 (452)
T 3e4b_A 117 LQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPE 193 (452)
T ss_dssp HHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 87765444 445555555444 455677788888888866555554333322211222337778888888888
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCchHHHHHHHHhhcCCCChhhHHHHHHH-H--hhcCChhhH
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKC----GQPSWARRFFDQFEIKPDDPAFWNAMISG-Y--GRNGEYESA 235 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a 235 (394)
+.++|.+.|++..+.| .++...+..|...|... +++++|...|++.. +.++..+..|... + ...+++++|
T Consensus 194 ~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 9999999999999988 44666656677777655 68999999999988 6788888888887 4 568999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccC-----CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh----cCcHHHH
Q 016128 236 VEIFDLMQQEKVKPNSASFVAVLSACGHAG-----HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR----SGRLDEA 306 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 306 (394)
+..|++..+.| +...+..+...|. .| ++++|..+|+... .-++.....|...|.. ..++++|
T Consensus 271 ~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A 341 (452)
T 3e4b_A 271 MKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKA 341 (452)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence 99999999876 6777778887776 45 9999999999886 2356777778777776 4499999
Q ss_pred HHHHHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 307 RELIRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 307 ~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..+|++..+++.. ....|...|.. ..+.++|..+|+++.+.+++........+......++..+|.++.++..+.
T Consensus 342 ~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 342 LDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999886555 77788887764 458999999999999988654443433444444556777888888776553
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=1.7e-14 Score=116.26 Aligned_cols=198 Identities=15% Similarity=0.047 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
...+..+...+...|++++|...|+++.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 34444555555555555555555554433 23344455555555555555555555555554421 1444555555555
Q ss_pred Hcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH
Q 016128 124 SQL-GMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW 201 (394)
Q Consensus 124 ~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (394)
... |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 555555555555554211222 3444555555555555555555555555543 2235555556666666666666
Q ss_pred HHHHHHHhhcC-C-CChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 202 ARRFFDQFEIK-P-DDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 202 a~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
|...+++.... | .+...+..+...+...|+.+.+..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666654433 3 44555555555566666666666666665543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=138.05 Aligned_cols=298 Identities=11% Similarity=-0.015 Sum_probs=163.8
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-C
Q 016128 44 SDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SR-N----ILTWNTMIAGMMLNGRSEKAMELFEGLAHE----GFKP-D 112 (394)
Q Consensus 44 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 112 (394)
.....+......+...|++++|+..|++... .| + ...|..+...+...|++++|...+++.... +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566667777777777777777777654 22 2 245666777777777777777777765442 1111 2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccch--------------------hhHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGM-VPS----LKCVTSVLSACADLSA--------------------LKLG 167 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 167 (394)
..++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566667777777777777777776654210 011 2345555555666666 5555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 247 (394)
...+++..+. +......+....++..+...+...|++++|+..+++..+...
T Consensus 167 ~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555443321 000000011122345555555555555555555555443210
Q ss_pred -CCC----HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC---
Q 016128 248 -KPN----SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE--- 315 (394)
Q Consensus 248 -~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 315 (394)
.++ ..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|...+++..+
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 011 124555555566666666666666555431000011 33455566666666666666666665543
Q ss_pred --CC----hhhHHHHHHHHHhcCCchHHHHHHHHHHhhC------CCCCchHHHHHHHHhhcCCcc
Q 016128 316 --PT----VSVYHSLLGACWCHLNSDLGEEMAMKLQEME------PENPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 316 --~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~ 369 (394)
++ ..++..+...+...|++++|...++++.++. +....++..++.++...|+..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11 1166667777777777777777777777653 222345666777777766653
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=3.3e-16 Score=138.68 Aligned_cols=269 Identities=10% Similarity=0.013 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHH
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDP----ATWNSMISGFSQLGMRFEAFKLFEKMQST----GM-VPSLK 149 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~ 149 (394)
..+..+...+...|++++|+..|++..+.+.. +. .++..+...|...|++++|+..+++..+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555667788889999999999888886332 33 46778888888889999998888887643 11 12334
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCC-----------------chHHHHHHH
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRAD-----LNKDESMATALISMYMKCGQ-----------------PSWARRFFD 207 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~ 207 (394)
.+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56667777777788888877777765431 11123455566666666666 666666655
Q ss_pred HhhcC-------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHccCCHHHHHHHHH
Q 016128 208 QFEIK-------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK-PN----SASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 208 ~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
+.... +.....+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 53221 111223555555566666666666666655443110 01 1144455555555555555555555
Q ss_pred HchhcCCCCC----CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CC---hh-hHHHHHHHHHhcCCchHHHHHHH
Q 016128 276 MMDDDFGLKP----KQEHFGCMVDLLGRSGRLDEARELIRELPE-----PT---VS-VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 276 ~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~-~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
+......-.. ...++..+...|...|++++|...+++... ++ .. ++..+..++...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5443200000 023344444455555555555555544432 11 01 34444444444555555555555
Q ss_pred HHHhhC
Q 016128 343 KLQEME 348 (394)
Q Consensus 343 ~~~~~~ 348 (394)
++.++.
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=6.4e-15 Score=129.96 Aligned_cols=236 Identities=11% Similarity=0.037 Sum_probs=155.7
Q ss_pred CCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCc----hHHHHHHHHHHHhcCChhHHHHHHHHhcc----C---
Q 016128 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSD----TMIGTALVDMYLKCGCLPCAHNVFQELKG----S--- 75 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~--- 75 (394)
..+....+......+...|++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...+++... .
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 35566777888888999999999999999999875 333 35788899999999999999999988643 1
Q ss_pred -CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHccCC--------------------H
Q 016128 76 -RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF-KPD----PATWNSMISGFSQLGM--------------------R 129 (394)
Q Consensus 76 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~--------------------~ 129 (394)
....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1245688888999999999999999998776411 012 4478888999999999 8
Q ss_pred HHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCc
Q 016128 130 FEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHGHVIRADLN-KD----ESMATALISMYMKCGQP 199 (394)
Q Consensus 130 ~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~ 199 (394)
++|+..+++..+. +..| ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9998888876532 1111 1234556666666777777777776665543110 11 12444555555555555
Q ss_pred hHHHHHHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 200 SWARRFFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 200 ~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
++|...+++.... ..+ ..++..+...+...|++++|...+++..
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5555555543221 001 2234444455555555555555555443
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=4.2e-15 Score=115.96 Aligned_cols=164 Identities=10% Similarity=0.063 Sum_probs=99.9
Q ss_pred ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHH
Q 016128 215 DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294 (394)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (394)
++..|..+...|.+.|++++|++.|++..+... -+..++..+...+...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 444555666666666666666666666555432 24455555666666666666666666655542 223344555555
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccH
Q 016128 295 DLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDV 371 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 371 (394)
..+...++++.|...+.+... |+.. .+..+..++...|++++|++.|+++.+.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 556666666666666665544 4444 6666666666677777777777777777777767777777777777777777
Q ss_pred HHHHHHhhhc
Q 016128 372 GRIRQMINDR 381 (394)
Q Consensus 372 ~~~~~~m~~~ 381 (394)
++.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777666553
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=8.2e-16 Score=131.89 Aligned_cols=275 Identities=12% Similarity=0.067 Sum_probs=152.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD----PATWNSMISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKC 150 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~ 150 (394)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|+..+++..+. +..| ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556677778888888888887776322 2 356677777777888888888877776432 1111 1334
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCC-------------chHHHHHHHHhhcC
Q 016128 151 VTSVLSACADLSALKLGKETHGHVIRADLN-KD----ESMATALISMYMKCGQ-------------PSWARRFFDQFEIK 212 (394)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~~~~~ 212 (394)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ .+++...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 555555566666666666666655432110 11 2234444444444444 0000000
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE----KVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK- 286 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 286 (394)
+++|...+++.... +..+ ...++..+...+...|++++|...++...+...-.++
T Consensus 159 -------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 159 -------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 44444444433221 1000 1234455555555666666666666555432000011
Q ss_pred ---HhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CC----hhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---
Q 016128 287 ---QEHFGCMVDLLGRSGRLDEARELIRELPE-----PT----VSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN--- 351 (394)
Q Consensus 287 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 351 (394)
..++..+...+...|++++|...+++... ++ ..++..+...+...|++++|...++++.+..+..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 22455566666666676666666665543 11 1266667777777788888887777777654322
Q ss_pred ---CchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 352 ---PTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 352 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..++..++.++.+.|++++|...++++.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 236677777888888888888888877653
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=2e-15 Score=133.56 Aligned_cols=270 Identities=10% Similarity=-0.020 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-h----hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-I----LTWNTMIAGMMLNGRSEKAMELFEGLAHE----GF-KPDPA 114 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~ 114 (394)
...+..+...+...|++++|+..|++... .|+ . ..|..+...+...|++++|...+++..+. +. .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555677788889999999999998765 333 2 46788888899999999999999987653 11 12356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHhhccch-----------------hhHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQST----GM-VPSLKCVTSVLSACADLSA-----------------LKLGKETHG 172 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 172 (394)
++..+...|...|++++|+..+++..+. +- .....++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788888999999999999999887653 11 1234467788888889999 899998888
Q ss_pred HHHHcC----C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-C--CC----hhhHHHHHHHHhhcCChhhHHHHHH
Q 016128 173 HVIRAD----L-NKDESMATALISMYMKCGQPSWARRFFDQFEIK-P--DD----PAFWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 173 ~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
+..+.. . .....++..+...|...|++++|...+++.... + .+ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 875431 1 112356777888899999999999999886543 1 11 1257888889999999999999998
Q ss_pred HHHHcCCC-C----CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC----CHhhHHHHHHHHHhcCcHHHHHHHHH
Q 016128 241 LMQQEKVK-P----NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP----KQEHFGCMVDLLGRSGRLDEARELIR 311 (394)
Q Consensus 241 ~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (394)
+..+.... . ...++..+...+...|++++|...+++......-.. ...++..+...|.+.|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 87654211 1 145677888889999999999999988765311111 13467778889999999999999988
Q ss_pred hCCC
Q 016128 312 ELPE 315 (394)
Q Consensus 312 ~~~~ 315 (394)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=1.3e-14 Score=127.22 Aligned_cols=229 Identities=9% Similarity=-0.006 Sum_probs=132.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC------CCHHHHHH
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHGHVIRADLN------KDESMATA 188 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 188 (394)
...+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+..+.... ....++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34444555555555555555432 1011 1234445555555555555555555554432110 01345556
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHc----CC-CCCHhhHHH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQE----KV-KPNSASFVA 256 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 256 (394)
+...|...|++++|...|++.... ..+ ..++..+...|...|++++|+..+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 666677777777777776664322 111 124667777777788888888777776652 22 223456777
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcC---CCCCCHhhHHHHHHHHHhcCc---HHHHHHHHHhCCC-CChh-hHHHHHHHH
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDF---GLKPKQEHFGCMVDLLGRSGR---LDEARELIRELPE-PTVS-VYHSLLGAC 328 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~~~-~~~~l~~~~ 328 (394)
+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++... |+.. .+..+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 7777777888888887777665421 111112234556666777777 7777777777755 3333 666777777
Q ss_pred HhcCCchHHHHHHHHHHhhC
Q 016128 329 WCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~ 348 (394)
...|++++|...++++.++.
T Consensus 350 ~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 77788888877777776644
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.65 E-value=1.7e-15 Score=136.20 Aligned_cols=210 Identities=10% Similarity=-0.013 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc-hHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHH
Q 016128 164 LKLGKETHGHVIRADLNKDESMATALISMYMKCGQP-SWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDL 241 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (394)
++++...++...... +.+...+..+...+...|++ ++|...|++.... |.+...|..+..+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444455555444332 23566677777777777777 7777777775443 55667777777888888888888888887
Q ss_pred HHHcCCCCCHhhHHHHHHHHHcc---------CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc--------CcHH
Q 016128 242 MQQEKVKPNSASFVAVLSACGHA---------GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS--------GRLD 304 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 304 (394)
..+. .|+...+..+...+... |++++|...+++..+. .+.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 7765 35567777777777777 8888888888887753 234567777788888777 8888
Q ss_pred HHHHHHHhCCC--C---Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 305 EARELIRELPE--P---TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 305 ~a~~~~~~~~~--~---~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
+|...|++..+ | +.. .|..+..++...|++++|.+.|+++.+.+|.++.++..+..++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888888775 5 455 88888889999999999999999999999988888899999998888888888654433
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=1.2e-12 Score=121.09 Aligned_cols=371 Identities=7% Similarity=-0.022 Sum_probs=212.1
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC---hhHHHHHHHHhcc-C---CChhH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC---LPCAHNVFQELKG-S---RNILT 80 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~---~~~~~ 80 (394)
+-|..+|..++..+.+.+.++.+..+|+.++..- |.+...|...+..-.+.|. ++.+..+|++... - |++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3478899999999999999999999999999774 7888999999999999998 9999999999876 3 88888
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHHHHHhc-CC-CC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRS--------EKAMELFEGLAHE-GF-KP-DPATWNSMISGFSQ---------LGMRFEAFKLFEKMQ 140 (394)
Q Consensus 81 ~~~ll~~~~~~~~~--------~~a~~~~~~m~~~-g~-~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~ 140 (394)
|...+....+.++. +.+.++|+..... |. .| +...|...+..... +++.+.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776665543 3445788876653 66 55 45678777765442 345677888888877
Q ss_pred hCCCCCCHHHHHH---HHHHhhc----------cchhhHHHHH-------------------------------------
Q 016128 141 STGMVPSLKCVTS---VLSACAD----------LSALKLGKET------------------------------------- 170 (394)
Q Consensus 141 ~~~~~~~~~~~~~---l~~~~~~----------~~~~~~a~~~------------------------------------- 170 (394)
......-..+|.. .-..... ..+++.|...
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5311111122211 1111000 0111222222
Q ss_pred ------------------------------HHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHH-HHHHHhhcC-CCChhh
Q 016128 171 ------------------------------HGHVIRADLNKDESMATALISMYMKCGQPSWAR-RFFDQFEIK-PDDPAF 218 (394)
Q Consensus 171 ------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~-~~~~~~ 218 (394)
|++.+... +....+|...+..+...|+.++|. .+|++.... |.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 22222221 113333344444444555555664 666554433 344444
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCC---------CCC------------HhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKV---------KPN------------SASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
|-.++....+.|+++.|.++|+++.+... .|+ ...|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555556666666666666666554210 121 124555555555556666666666666
Q ss_pred hhcCCCCCCHhhHHHHHHHHHhc-CcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC---
Q 016128 278 DDDFGLKPKQEHFGCMVDLLGRS-GRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--- 350 (394)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 350 (394)
.+. ........|...+..-.+. ++.+.|..+|+...+ |+.. .|...+......|+.+.|..+|+++....|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 542 0111222232222222222 335666666666655 4444 5555555555566666666666666665542
Q ss_pred CCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 351 NPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
....|..++....+.|+.+.+..+.+++.+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2344555555555666666666666666554
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=4.9e-15 Score=127.04 Aligned_cols=276 Identities=10% Similarity=-0.023 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG-SR-N----ILTWNTMIAGMMLNGRSEKAMELFEGLAHE----GFKP-DPA 114 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 114 (394)
...+......+...|++++|+..|++... .| + ...+..+...+...|++++|.+.+++.... +..| ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556677888999999999999999765 33 3 356888899999999999999999987653 2222 356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccch--------------------hhHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGM-VPS----LKCVTSVLSACADLSA--------------------LKLGKE 169 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 169 (394)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788889999999999999999999765311 122 3367788888888899 777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-C
Q 016128 170 THGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-K 248 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~ 248 (394)
.+++..+. .+.....+.....+..+...+...|++++|...+++..+... .
T Consensus 165 ~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 165 LYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 77665432 111111001122334444444445555555555544432100 0
Q ss_pred C----CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----
Q 016128 249 P----NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE----- 315 (394)
Q Consensus 249 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 315 (394)
+ ...++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|...+++...
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 0 1124455555555666666666655554431000111 33455566666667777777666665543
Q ss_pred CC---hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 316 PT---VS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 316 ~~---~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
.+ .. ++..+...+...|++++|...++++.++.+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11 12 666777778888888888888888777654
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=1.7e-14 Score=112.56 Aligned_cols=167 Identities=14% Similarity=0.012 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhc-CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEI-KPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (394)
+..+|..+...|...|++++|...|++... .|.++..|..+..+|.+.|++++|+..+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 567888888888888999999998888654 367788888888899999999999999988877643 356677777888
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.|++..+ |+.. +|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88889999999998888763 345677888888899999999999999988876 6666 899999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 016128 338 EEMAMKLQEMEPEN 351 (394)
Q Consensus 338 ~~~~~~~~~~~~~~ 351 (394)
++.|+++.+.+|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999988865
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=7.9e-15 Score=128.51 Aligned_cols=227 Identities=8% Similarity=-0.005 Sum_probs=175.2
Q ss_pred HHHHhhccchhhHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CC-----ChhhHH
Q 016128 154 VLSACADLSALKLGKETHGHVIRADL-NK----DESMATALISMYMKCGQPSWARRFFDQFEIK---PD-----DPAFWN 220 (394)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-----~~~~~~ 220 (394)
....+...|++++|...+++..+.-. .+ ...++..+...|...|++++|...+++.... .. ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55667889999999999999876411 12 3467888999999999999999999885432 11 234588
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHccCCHHHHHHHHHHchhcC---CC-CCCHhhHH
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVK-PN----SASFVAVLSACGHAGHVDKALQIFTMMDDDF---GL-KPKQEHFG 291 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 291 (394)
.+...|...|++++|+..+++..+.... ++ ..++..+...|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988653111 12 2478889999999999999999999887510 12 33356788
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC-----CChh---hHHHHHHHHHhcCC---chHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE-----PTVS---VYHSLLGACWCHLN---SDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~---~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
.+...|.+.|++++|...+++..+ .+.. .+..+...+...|+ .++|+.++++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 899999999999999999998765 2222 45678888888898 77777777765 222445567888999
Q ss_pred HHhhcCCcccHHHHHHHhhhc
Q 016128 361 IYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.|.+.|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998763
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=3.7e-13 Score=114.03 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-------cchh-------hHHHHH
Q 016128 113 PATWNSMISGFSQL----GMR----FEAFKLFEKMQSTGMVPSLKCVTSVLSACAD-------LSAL-------KLGKET 170 (394)
Q Consensus 113 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 170 (394)
...|...+..-.+. ++. ++|..+|++..... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34566666654443 233 57777888877652 3456667766666643 3554 778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC-Chh-hHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 016128 171 HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD-DPA-FWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
+++.++.-.+.+...+..++..+.+.|++++|..+|++....+| ++. .|..++..+.+.|++++|..+|++..+...
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR- 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 88777731133566777777777788888888888887766533 344 677777777778888888888888776532
Q ss_pred CCHhhHHHHHHHHH-ccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----C-C-hh-h
Q 016128 249 PNSASFVAVLSACG-HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----P-T-VS-V 320 (394)
Q Consensus 249 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~-~~-~ 320 (394)
++...|...+.... ..|+.++|..+|+...+. .+.+...+..++..+.+.|++++|..+|++... + + .. .
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 23344433332221 257888888888777653 234566777777777778888888888777754 2 1 22 6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
|..++..+...|+.+.|..+++++.+..|.++..
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 7777777777788888888888888777765533
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=7.2e-13 Score=112.26 Aligned_cols=240 Identities=12% Similarity=0.068 Sum_probs=175.4
Q ss_pred ChhHHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHH
Q 016128 77 NILTWNTMIAGMMLN----GRS----EKAMELFEGLAHEGFKPDPATWNSMISGFSQ-------LGMR-------FEAFK 134 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-------~~~~-------~~a~~ 134 (394)
+...|...+....+. ++. ++|..+|++..... +-++..|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345577777765554 233 67888888888763 2367788888877753 4775 88999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHhhcC-
Q 016128 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES-MATALISMYMKCGQPSWARRFFDQFEIK- 212 (394)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 212 (394)
+|++..+.-.+-+...|..++..+...|++++|..+|+++++.... +.. +|..++..+.+.|++++|..+|++....
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9998887312335567888888888889999999999998875432 333 7888888888889999999999887765
Q ss_pred CCChhhHHHHHHHHh-hcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC--CHhh
Q 016128 213 PDDPAFWNAMISGYG-RNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP--KQEH 289 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 289 (394)
|.+...|...+.... ..|++++|..+|++..+.. +-+...+..++..+...|++++|..+|+.......++| ....
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 444445544433322 3689999999999887763 23677788888888888999999999998887422354 3567
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--PTVS 319 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~ 319 (394)
|..++..+.+.|+.++|..+++++.+ |+..
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 88888888888999999988888765 5543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=7e-14 Score=125.65 Aligned_cols=215 Identities=11% Similarity=0.002 Sum_probs=182.3
Q ss_pred CChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 016128 60 GCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRS-EKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF 136 (394)
Q Consensus 60 g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 136 (394)
+.+++++..+++... +.+...+..+...+...|++ ++|++.|++..+.... +..+|..+..+|...|++++|+..|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456778888877654 34677888889999999999 9999999999887433 6889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhcc---------chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCc
Q 016128 137 EKMQSTGMVPSLKCVTSVLSACADL---------SALKLGKETHGHVIRADLNKDESMATALISMYMKC--------GQP 199 (394)
Q Consensus 137 ~~m~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 199 (394)
++..+. .|+...+..+..++... |++++|.+.+++..+... .+...+..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999876 46778888999999999 999999999999988763 4688888999999988 999
Q ss_pred hHHHHHHHHhhcC-C---CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 016128 200 SWARRFFDQFEIK-P---DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 200 ~~a~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
++|...|++.... | .++..|..+..+|...|++++|+..|++..+... .+...+..+...+...|++++|...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999997664 5 5788899999999999999999999999988743 356778888899999999999998777
Q ss_pred Hchh
Q 016128 276 MMDD 279 (394)
Q Consensus 276 ~~~~ 279 (394)
.+..
T Consensus 317 ~~~~ 320 (474)
T 4abn_A 317 KTKP 320 (474)
T ss_dssp TCCH
T ss_pred cccC
Confidence 6643
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=127.28 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc------C
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQST-------GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA------D 178 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 178 (394)
+..++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567778888888888888888888887752 22333456667777777778888888777776654 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc---
Q 016128 179 L-NKDESMATALISMYMKCGQPSWARRFFDQFEIK---------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE--- 245 (394)
Q Consensus 179 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 245 (394)
. .....++..+...|...|++++|...+++.... +.....+..+...+...|++++|++.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123455566666677777777777766664332 112333556666666666666666666666543
Q ss_pred ---CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcC------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 246 ---KVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDF------GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 246 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
+..| ...++..+...+...|++++|...++++.+.. ...+..........
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------------------- 245 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE-------------------- 245 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH--------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH--------------------
Confidence 1111 22345555666666666666666666655310 00000000000000
Q ss_pred CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 316 PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 316 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.+..+...+...+.+.++...++.+....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 246 ----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 246 ----EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111222233344444555555555555555555566666666666666666666665543
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=4.3e-14 Score=132.14 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=132.7
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
|.+...|+.|...|.+.|++++|++.|++..+... -+..++..+..+|.+.|++++|+..|++..+. -+-+...|..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 44566678888888888888888888888877642 25677788888888888888888888887753 2334677888
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (394)
+..+|.+.|++++|++.|++..+ |+.. .|..+..++...|++++|++.|+++.+++|.++.++..++.++...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888888765 6666 88888889999999999999999999999999899999999999999999
Q ss_pred cHHHHHHHhhh
Q 016128 370 DVGRIRQMIND 380 (394)
Q Consensus 370 ~a~~~~~~m~~ 380 (394)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887765
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=6.6e-13 Score=116.02 Aligned_cols=224 Identities=12% Similarity=0.014 Sum_probs=121.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC------CCHHHHHHHHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGM-VPS----LKCVTSVLSACADLSALKLGKETHGHVIRADLN------KDESMATALIS 191 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~ 191 (394)
+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+++..+.... ....+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3444555555555555443200 011 223444444455555555555554444332100 01334455566
Q ss_pred HHHHcCCchHHHHHHHHhhcC---CC----ChhhHHHHHHHHhhcCChhhHHHHHHHHHH-----cCCCCCHhhHHHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK---PD----DPAFWNAMISGYGRNGEYESAVEIFDLMQQ-----EKVKPNSASFVAVLS 259 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~ 259 (394)
+|...|++++|...|++.... .. ...++..+..+|...|++++|+..+++..+ .. +....++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHH
Confidence 666666666666666553321 01 123356666777777777777777776655 22 222556666777
Q ss_pred HHHccCCHHHHHHHHHHchhcCCC---CCCHhhHHHHHHHHHhcCc---HHHHHHHHHhCCC-CChh-hHHHHHHHHHhc
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGL---KPKQEHFGCMVDLLGRSGR---LDEARELIRELPE-PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~~~-~~~~l~~~~~~~ 331 (394)
.+...|++++|...+++..+...- +.....+..+...+...|+ +.+|...+++... ++.. .+..+...|...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHC
Confidence 777777777777777766543111 1112334445555566666 6777777776554 3333 566677777777
Q ss_pred CCchHHHHHHHHHHhh
Q 016128 332 LNSDLGEEMAMKLQEM 347 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~ 347 (394)
|++++|...++++.+.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777776553
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=124.73 Aligned_cols=245 Identities=11% Similarity=0.063 Sum_probs=169.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------C
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHE-------GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST------G 143 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 143 (394)
+..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|+..+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999998873 22334667888999999999999999999998754 2
Q ss_pred C-CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---
Q 016128 144 M-VPSLKCVTSVLSACADLSALKLGKETHGHVIRA------DL-NKDESMATALISMYMKCGQPSWARRFFDQFEIK--- 212 (394)
Q Consensus 144 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 212 (394)
- +.....+..+...+...|++++|...++++.+. +. ......+..+...+...|++++|..++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 234567888999999999999999999998765 22 223566788899999999999999999986542
Q ss_pred ------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC-------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 213 ------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK-------VKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 213 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
+....++..+...+...|++++|...++++.+.. ..+.........
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--------------------- 244 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA--------------------- 244 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH---------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH---------------------
Confidence 2234458889999999999999999999998752 111111111111
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
..+..+...+...+.+.++...++.... |+.. ++..+..+|...|++++|.+.++++.++.|.
T Consensus 245 --------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 --------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112222223334444455555555554 3333 7777888888888888888888888776653
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=3.5e-12 Score=111.22 Aligned_cols=293 Identities=9% Similarity=-0.012 Sum_probs=191.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH----HHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPA----TWNSMISGFSQLGMRFEAFKLFEKMQSTGM-VPSL----KCV 151 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~ 151 (394)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556678899999999999987764332332 456677788889999999999988764310 1122 235
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcC----CC--C-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC------Chhh
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRAD----LN--K-DESMATALISMYMKCGQPSWARRFFDQFEIKPD------DPAF 218 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~ 218 (394)
..+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++.....+ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777888899999998888876532 11 2 234556677888888999999888887543211 1234
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHccCCHHHHHHHHHHchhcCCCCCC---Hhh
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS-ASFV-----AVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEH 289 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 289 (394)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++..... ...+. ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 677778888888999998888887654212111 1121 1223466788888888888887653 21111 224
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC-----C---Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE-----P---TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~---~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
+..+...+...|++++|...+++... + +.. .+..+..++...|+.++|...++++....++.... .
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~-----~ 330 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI-----S 330 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC-----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHH-----H
Confidence 56677788888888888888877654 1 122 55566777788888888888888888777653322 2
Q ss_pred HHhhcCCcccHHHHHHHhhhc
Q 016128 361 IYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 233344 4556666665543
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=6.7e-11 Score=109.48 Aligned_cols=354 Identities=9% Similarity=0.015 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCC---HHHHHHHH
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGR---SEKAMELF 101 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~---~~~a~~~~ 101 (394)
.......++..+..+ +.|...|..++..+.+.+.++.+..+|+++.. +.....|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334455677777776 77999999999999999999999999999876 5677889999999889998 99999999
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHhhc---------
Q 016128 102 EGLAHEG-FKPDPATWNSMISGFSQLGMR--------FEAFKLFEKMQS-TGM-VPS-LKCVTSVLSACAD--------- 160 (394)
Q Consensus 102 ~~m~~~g-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~l~~~~~~--------- 160 (394)
++..... ..|++..|..-+....+.++. +.+.++|+.... .|. .|+ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9999874 247888988887766655543 334577777654 466 554 4677777765432
Q ss_pred cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------------cCCch---------------------------
Q 016128 161 LSALKLGKETHGHVIRADLNKDESMATALISMYMK-------------CGQPS--------------------------- 200 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~--------------------------- 200 (394)
.++++.+..+|+.++......-..+|......-.. ..+++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 34567788888887753222112222111100000 00011
Q ss_pred ----------------------------------------HHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHH-HH
Q 016128 201 ----------------------------------------WARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAV-EI 238 (394)
Q Consensus 201 ----------------------------------------~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~-~~ 238 (394)
.+..+|++.... |..+..|-..+..+...|+.++|. .+
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 122333333222 445556666677777788888997 99
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC---------CCCCC------------HhhHHHHHHHH
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF---------GLKPK------------QEHFGCMVDLL 297 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~------------~~~~~~l~~~~ 297 (394)
|++.... ++.+...+...+......|++++|..+|+.+.... .. |+ ..+|...++..
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHH
Confidence 9998875 33455566777888888999999999999887531 11 31 23677778888
Q ss_pred HhcCcHHHHHHHHHhCCCC-Ch---hhHHHHHHHHHhc-CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHH
Q 016128 298 GRSGRLDEARELIRELPEP-TV---SVYHSLLGACWCH-LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~-~~---~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
.+.|..+.|..+|.+..+. +. ..|...+..-.+. ++.+.|..+|+.+++..|.++..+...+......|+.+.|.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8889999999999988652 21 2444333333344 45899999999999999989888888899888999999999
Q ss_pred HHHHHhhhccc
Q 016128 373 RIRQMINDRQL 383 (394)
Q Consensus 373 ~~~~~m~~~~~ 383 (394)
.+|++......
T Consensus 525 ~lferal~~~~ 535 (679)
T 4e6h_A 525 SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHhcC
Confidence 99999887644
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=1.1e-13 Score=107.73 Aligned_cols=163 Identities=13% Similarity=0.005 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.+..+...+...|++++|...++++... |.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444455555555555555555554433 3344445555555555555555555555554432 1233444444444444
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
.|++++|...++.+.+. .+.+.. .+..+...+...|++++|...+++
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~-------------------------------~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFN-------------------------------VRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHH-------------------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHH
Confidence 45555555444444432 122233 455555555556666666666666
Q ss_pred HHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 344 LQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+.+..|.++..+..++.++...|++++|...++++.+.
T Consensus 136 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666655556666666666666666666666665543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=9.6e-13 Score=106.31 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHH
Q 016128 146 PSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMIS 224 (394)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~ 224 (394)
.|+..+......+...|++++|...|++..+....++...+..+..++...|++++|...|++.... |.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888888899999999999999999998875467777777999999999999999999987665 566777899999
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHH
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPNS-------ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMV 294 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 294 (394)
.+...|++++|+..+++..+.... +. ..|..+...+...|++++|+..++...+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 999999999999999999886422 44 4577788888899999999999999885 3454 56777777
Q ss_pred HHHHhcCcH--HHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 295 DLLGRSGRL--DEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 295 ~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
..|...|+. +++. .+...+...|.... ....+.+++|+..++++.++.|.++.+...+..+.
T Consensus 161 ~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKAT----PLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHG----GGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----hcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777766553 2222 22222222444333 23456789999999999999999988777766554
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=5.3e-12 Score=110.30 Aligned_cols=305 Identities=8% Similarity=0.025 Sum_probs=212.9
Q ss_pred CCCChHHHHHHHHHh--hhhHhHHHHHHHHHHHHhhh--cCCc--hHHHHHHHHHH--HhcCChhHHH---------HHH
Q 016128 7 DEPNSVTFISVISAC--ASLLYLQFGRQVHGLTLKIE--KQSD--TMIGTALVDMY--LKCGCLPCAH---------NVF 69 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~--~~~g~~~~A~---------~~~ 69 (394)
+.|+..+-..+-..+ .+.+++++|.++++.+.+.. ...| ...|-.++..- .-.+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 455666666666666 78899999999999887643 2233 33334444321 1123333333 566
Q ss_pred HHhcc--CC-C-h---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHH
Q 016128 70 QELKG--SR-N-I---LTWNTMIAGMMLNGRSEKAMELFEGLAHEGF-KPD----PATWNSMISGFSQLGMRFEAFKLFE 137 (394)
Q Consensus 70 ~~~~~--~~-~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 137 (394)
+.+.. .+ + . ..|......+...|++++|+..|++..+... .++ ..++..+...|...|+++.|+..++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 65542 11 1 1 1223345566789999999999999876411 122 5578889999999999999999999
Q ss_pred HHHhC----CC-CC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHHcCCchHHHHHH
Q 016128 138 KMQST----GM-VP-SLKCVTSVLSACADLSALKLGKETHGHVIRAD--LN---KDESMATALISMYMKCGQPSWARRFF 206 (394)
Q Consensus 138 ~m~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (394)
+..+. +. .+ ...++..+..++...|++++|.+.+++..+.. .. ....++..+..+|...|++++|...|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87643 11 11 24577888999999999999999999887632 11 12356778999999999999999999
Q ss_pred HHhhc-----C-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC---C-CHhhHHHHHHHHHccCC---HHHHHHH
Q 016128 207 DQFEI-----K-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK---P-NSASFVAVLSACGHAGH---VDKALQI 273 (394)
Q Consensus 207 ~~~~~-----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~---~~~a~~~ 273 (394)
++... . +....++..+...+.+.|++++|...+++..+.... | ....+..+...+...++ +++|..+
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 98755 3 444666888999999999999999999998775321 1 23445666667777788 7788887
Q ss_pred HHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 274 FTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
++... ..+.....+..+...|...|++++|...|++..
T Consensus 326 ~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 326 FEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77642 222334567788999999999999999998764
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1.1e-12 Score=102.08 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHH
Q 016128 148 LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGY 226 (394)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~ 226 (394)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.... |.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567778888999999999999999988765 346888899999999999999999999997654 66788899999999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 016128 227 GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (394)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874 347788888999999999999999999998764 233455666666666666666666
Q ss_pred HHHHHhCC
Q 016128 307 RELIRELP 314 (394)
Q Consensus 307 ~~~~~~~~ 314 (394)
...+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=9.9e-12 Score=108.35 Aligned_cols=299 Identities=10% Similarity=0.038 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CC-Ch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH----HH
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SR-NI----LTWNTMIAGMMLNGRSEKAMELFEGLAHEGF-KPDP----AT 115 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~ 115 (394)
........+...|++++|...+++... ++ +. ..++.+...+...|++++|.+.+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344555667788999999999998654 22 22 2466677888899999999999998876311 1122 33
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC----CHH
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKMQST----GMV--P-SLKCVTSVLSACADLSALKLGKETHGHVIRADLNK----DES 184 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 184 (394)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 567788899999999999999987653 222 2 23456678888899999999999999987654221 245
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC---CCChhhHH-----HHHHHHhhcCChhhHHHHHHHHHHcCCCCC---Hhh
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK---PDDPAFWN-----AMISGYGRNGEYESAVEIFDLMQQEKVKPN---SAS 253 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 253 (394)
.+..+...+...|++++|...+++.... +..+..+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6778888999999999999999986432 22222222 233447789999999999998876542221 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcC---CCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDF---GLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACW 329 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 329 (394)
+..+...+...|++++|...++...... +..++. ..+..+..++...|+.++|...+++...-.. -......+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~~g~~~~~~ 333 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--RTGFISHFV 333 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--cccHHHHHH
Confidence 6677888999999999999999875431 222222 3566678889999999999999988754000 011122333
Q ss_pred hcCCchHHHHHHHHHHhhCCC
Q 016128 330 CHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~ 350 (394)
..| +....+++.+....|.
T Consensus 334 ~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 334 IEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp TTH--HHHHHHHHHHHHTTCS
T ss_pred Hcc--HHHHHHHHHHHhCCCC
Confidence 344 5566666766666664
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=1.2e-12 Score=105.72 Aligned_cols=192 Identities=9% Similarity=0.027 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-C-CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQFEIK-P-DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
.++..+......+...|++++|...|++.... | ++...+..+..++...|++++|+..+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 46678888888999999999999999986654 4 67777777888999999999999999998876432 567788888
Q ss_pred HHHHccCCHHHHHHHHHHchhcCCCCCCH-------hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--hh-hHHHHHH
Q 016128 259 SACGHAGHVDKALQIFTMMDDDFGLKPKQ-------EHFGCMVDLLGRSGRLDEARELIRELPE--PT--VS-VYHSLLG 326 (394)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~-~~~~l~~ 326 (394)
..+...|++++|...+++..+. .+.+. ..|..+...+...|++++|...|++..+ |+ .. .|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 8999999999999999998864 22334 4577777888889999999999998887 66 55 7777777
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
++... +...++++..+.+.++..+... .....+.+++|+..+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 77554 3455677777776664444433 3445677899999999988754
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.43 E-value=6.1e-11 Score=99.50 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHc-CCchHHHHHHHHhhcC-C--CC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-----
Q 016128 185 MATALISMYMKC-GQPSWARRFFDQFEIK-P--DD----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS----- 251 (394)
Q Consensus 185 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 251 (394)
++..+...|... |++++|...|++.... + .+ ..++..+...+...|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 445556666664 6666666666654332 1 01 234566666777777777777777776664322211
Q ss_pred -hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh------hHHHHHHHHH--hcCcHHHHHHHHHhCCCC
Q 016128 252 -ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE------HFGCMVDLLG--RSGRLDEARELIRELPEP 316 (394)
Q Consensus 252 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 316 (394)
..+..+..++...|++++|...+++..+ +.|+.. .+..++.++. ..+++++|+..|+++...
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1345556666667777777777777653 223211 2233444443 345566666666666553
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=1.2e-11 Score=115.64 Aligned_cols=162 Identities=6% Similarity=0.003 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+...++.+..++.+.|++++|++.|++..+ +.+..+|+.+...|.+.|++++|++.|++..+.... +..+|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345556666666666666666666665543 234455555666666666666666666655554222 35555555556
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
|...|++++|++.|++..+.. +-+...|..+..++...|++++|.+.|++.++... -+...+..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHH
Confidence 666666666666655555432 12344455555555555555555555555554432 2344444455555555555555
Q ss_pred HHHHHHh
Q 016128 203 RRFFDQF 209 (394)
Q Consensus 203 ~~~~~~~ 209 (394)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.39 E-value=6.9e-13 Score=110.66 Aligned_cols=154 Identities=13% Similarity=0.030 Sum_probs=70.6
Q ss_pred ccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 016128 125 QLGMRFEAFKLFEKMQST-------GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA------DL-NKDESMATALI 190 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 190 (394)
..|++++|+..|++..+. ..+....++..+..++...|++++|...++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445555555555554331 11222344555555566666666666666555433 11 11233444555
Q ss_pred HHHHHcCCchHHHHHHHHhhcC---------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc------CCCC-CHhhH
Q 016128 191 SMYMKCGQPSWARRFFDQFEIK---------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE------KVKP-NSASF 254 (394)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 254 (394)
..|...|++++|...+++.... +.....+..+...+...|++++|+..+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5555555555555555543321 112223444455555555555555555554432 0011 12334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHch
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
..+...+...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444445555555555544443
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.39 E-value=1.8e-10 Score=94.98 Aligned_cols=180 Identities=9% Similarity=0.022 Sum_probs=125.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCC---CChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 167 GKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKP---DDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
+...+++..+.+ .++......+..++...|++++|++++.+..... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 3455555677788888888888888888764432 455667778888888888888888888887
Q ss_pred HcCCCC-----CHhhHHHHHHHH--HccC--CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 244 QEKVKP-----NSASFVAVLSAC--GHAG--HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 244 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
+. .| +..+...++.++ ...| +..+|..+|+++... .|+...-..++.++.+.|++++|...++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 45 355566666553 2234 788888888888654 3443333444447888899999888887654
Q ss_pred C------------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 315 E------------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 315 ~------------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
+ |+.. ++..++......|+ +|.++++++.+..|.+|..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 3 5555 66566655556676 7889999999999987644
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=7.8e-12 Score=103.19 Aligned_cols=189 Identities=14% Similarity=0.076 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC---hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CC-CHhhHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK-PDD---PAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-KP-NSASFVA 256 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ 256 (394)
...+..+...+.+.|++++|...|+++... |.+ +..+..+..+|.+.|++++|+..|++..+... .| ....+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 334444444555555555555555554433 222 33444555555555555555555555554321 11 1233444
Q ss_pred HHHHHHc--------cCCHHHHHHHHHHchhcCCCCCCHh---------------hHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 257 VLSACGH--------AGHVDKALQIFTMMDDDFGLKPKQE---------------HFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 257 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
+..++.. .|++++|...|+++.+.+.-.+... .+..+...|.+.|++++|...|+++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4444444 5555555555555554311111111 1255677888999999999999888
Q ss_pred CC--CC---hh-hHHHHHHHHHhc----------CCchHHHHHHHHHHhhCCCCCch---HHHHHHHHhhcCCcccH
Q 016128 314 PE--PT---VS-VYHSLLGACWCH----------LNSDLGEEMAMKLQEMEPENPTP---FVILSNIYAGLGRWEDV 371 (394)
Q Consensus 314 ~~--~~---~~-~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a 371 (394)
.+ |+ .. .+..+..++... |++++|+..++++.+..|+++.. ...+...+.+.++++++
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 65 54 33 677777788765 88899999999999999988643 44444455555554443
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=1.1e-11 Score=103.34 Aligned_cols=157 Identities=10% Similarity=0.063 Sum_probs=117.7
Q ss_pred HhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 016128 89 MLNGRSEKAMELFEGLAHE-------GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST------GM-VPSLKCVTSV 154 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 154 (394)
...|++++|+.++++..+. ..+....++..+...|...|++++|+..+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 22224667888999999999999999999998754 22 2235678888
Q ss_pred HHHhhccchhhHHHHHHHHHHHcC------C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---------CCChhh
Q 016128 155 LSACADLSALKLGKETHGHVIRAD------L-NKDESMATALISMYMKCGQPSWARRFFDQFEIK---------PDDPAF 218 (394)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~ 218 (394)
..++...|++++|.+.++++.+.. . +....++..+...|...|++++|...+++.... +....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 899999999999999999887651 1 224567788889999999999999999886543 222445
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
+..+...+...|++++|...+++..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999999999988753
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=1.9e-10 Score=94.88 Aligned_cols=240 Identities=11% Similarity=0.024 Sum_probs=168.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
+-..-.|++..++.-..++. ..........+.+++...|++... ....|....+..+...+ ..
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~---- 83 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT---- 83 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT----
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc----
Confidence 33445677777776332221 111223333455667666666531 12234444444444433 32
Q ss_pred HHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 201 WARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-KPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 201 ~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
.|...|+++... +++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 277888887655 35666667888999999999999999999877654 2356778888999999999999999999997
Q ss_pred hcCCCCC-----CHhhHHHHHHHH--HhcC--cHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 279 DDFGLKP-----KQEHFGCMVDLL--GRSG--RLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 279 ~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+ |+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 56 355666666663 3334 89999999999987 54223344444889999999999999988776
Q ss_pred ----------CCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 348 ----------EPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 348 ----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+|.++.++..++......|+ +|.++++++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899999888888887887 8999999988754
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.34 E-value=1.2e-10 Score=93.60 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC---hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK-PDD---PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFV 255 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 255 (394)
+...+..+...+...|++++|...|+++... |.+ ...+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888889999999999987654 323 245777888889999999999999998876432111 2344
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCC
Q 016128 256 AVLSACGH------------------AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPT 317 (394)
Q Consensus 256 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (394)
.+..++.. .|++++|...|+.+.+. .+-+.......... +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHHHHH----------
Confidence 44455443 34556666666665542 11111111111100 0000000
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcccHHHHHHHhhhccccc
Q 016128 318 VSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP---TPFVILSNIYAGLGRWEDVGRIRQMINDRQLTK 385 (394)
Q Consensus 318 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 385 (394)
......+...+...|++++|+..|+++.+..|.++ .++..++.++.+.|++++|++.++.+...+...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113456778899999999999999999999876 568899999999999999999999888765443
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=2.8e-12 Score=96.05 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=108.9
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (394)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|+..|++..+. -+.+...+..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 4455666778888888888776542 113445667788888888888888888888763 2345778888888888899
Q ss_pred cHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHH-HHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 302 RLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEM-AMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 302 ~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
++++|...|++..+ |+.. +|..+...+.+.|+.++|.+. ++++.+++|.++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999988888876 7666 888899999999998776654 589999999999998888888877774
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=8.6e-11 Score=96.89 Aligned_cols=169 Identities=11% Similarity=0.032 Sum_probs=140.3
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-Hh
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN---SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QE 288 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 288 (394)
+.++..+-.+...+.+.|++++|+..|+++.+.... + ...+..+..++...|++++|...|+.+.+.+.-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456777888889999999999999999999887422 3 567888999999999999999999999875222222 45
Q ss_pred hHHHHHHHHHh--------cCcHHHHHHHHHhCCC--CChh-hH-----------------HHHHHHHHhcCCchHHHHH
Q 016128 289 HFGCMVDLLGR--------SGRLDEARELIRELPE--PTVS-VY-----------------HSLLGACWCHLNSDLGEEM 340 (394)
Q Consensus 289 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~--~~~~-~~-----------------~~l~~~~~~~g~~~~a~~~ 340 (394)
.+..+..++.. .|++++|...|+++.+ |+.. .. ..+...+...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67778888888 9999999999999886 6554 44 5568889999999999999
Q ss_pred HHHHHhhCCCCC---chHHHHHHHHhhc----------CCcccHHHHHHHhhhcc
Q 016128 341 AMKLQEMEPENP---TPFVILSNIYAGL----------GRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 341 ~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 382 (394)
|+++.+..|.++ ..+..++.+|... |++++|+..++++.+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 999999998855 4788888899876 88899999999988753
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.30 E-value=1.5e-09 Score=97.58 Aligned_cols=353 Identities=10% Similarity=-0.017 Sum_probs=194.8
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC-hhHHHHHHHHhcc-----CCChhHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC-LPCAHNVFQELKG-----SRNILTWNT 83 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~-----~~~~~~~~~ 83 (394)
-...|...+..+-. |+++.+.++|+..+.. .|+...|...+....+.++ .+....+|+.... ..+...|..
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 34556666666544 6778888888877763 3577788877777766653 3556666666543 235566666
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------------cCCHHHHHHHHHHHHhCCCCC
Q 016128 84 MIAGMM----LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ-------------LGMRFEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 84 ll~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~~~~~~ 146 (394)
.+..+. ..++.+.+.++|++........-...|......-.. .+.+..|..+++++...-...
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 666543 235677788888887764211112222222221111 011223333343333210001
Q ss_pred CHHHHHHHHHHhhcc----c---hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhH
Q 016128 147 SLKCVTSVLSACADL----S---ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFW 219 (394)
Q Consensus 147 ~~~~~~~l~~~~~~~----~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 219 (394)
+...|...+..-... . ..+.+..+|++++... +.+..+|...+..+.+.|+.++|..++++....|.+...|
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~ 249 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLS 249 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHH
Confidence 223444444332211 0 1344566777777654 3456777777777777888888888888755543333333
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcC---------CCC---CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQEK---------VKP---NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ 287 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (394)
.. |....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.. .. . ..+.
T Consensus 250 ~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~ 319 (493)
T 2uy1_A 250 LY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGP 319 (493)
T ss_dssp HH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCH
T ss_pred HH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCCh
Confidence 32 2221111222 22222210 001 1234556666666677888888888888 32 1 2233
Q ss_pred hhHHHHHHHHHh-cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 288 EHFGCMVDLLGR-SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 288 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.+|...+..-.. .++.+.|..+|+...+ |+.. .|...++.....|+.+.|..+|+++ +.....|...+..-.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 444332222222 2368888888887765 5444 5566677777788888888888886 234556777777777
Q ss_pred hcCCcccHHHHHHHhhh
Q 016128 364 GLGRWEDVGRIRQMIND 380 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~ 380 (394)
..|+.+.+..+++++.+
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 78888888888877764
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=6.1e-11 Score=86.65 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=65.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|..+++++.. |+.. .+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3444444444455554444444432 122333444444445555555555555544433 3322 5555556666666
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
++++|...++++.+..|.++..+..++.++.+.|++++|...++++.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666666666666666666666666666666666554
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=1.2e-11 Score=116.08 Aligned_cols=166 Identities=11% Similarity=-0.040 Sum_probs=76.5
Q ss_pred HcCCchHHHHHHHHhh--------cC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 016128 195 KCGQPSWARRFFDQFE--------IK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG 265 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (394)
..|++++|.+.+++.. .. |.+...+..+..++...|++++|+..|++..+... .+...+..+..++...|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcC
Confidence 3444555555554443 11 33344444444455555555555555555444321 13344444444455555
Q ss_pred CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
++++|...|++..+. .+.+...+..+..+|.+.|++++ ...|++..+ |+.. .|..+..++...|++++|++.|+
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544432 11223344444444555555555 444444443 3333 44445555555555555555555
Q ss_pred HHHhhCCCCCchHHHHHHHHhh
Q 016128 343 KLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
++.+.+|.+..++..++.++..
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC-
T ss_pred hhcccCcccHHHHHHHHHHHHc
Confidence 5555555444445444444444
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=5.6e-10 Score=93.60 Aligned_cols=205 Identities=11% Similarity=0.010 Sum_probs=150.5
Q ss_pred HhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc------CC--ChhHHHHHHHHHHhcCCHHH
Q 016128 25 LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG------SR--NILTWNTMIAGMMLNGRSEK 96 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~--~~~~~~~ll~~~~~~~~~~~ 96 (394)
+++++|.+.|+.. ...|...|++++|...|++... .+ ...+|+.+...|.+.|++++
T Consensus 31 ~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3588888888776 3457788999999999987653 11 14678899999999999999
Q ss_pred HHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCC----CCC-HHHHHHHHHHhhccchhh
Q 016128 97 AMELFEGLAHEGFK-PD----PATWNSMISGFSQL-GMRFEAFKLFEKMQSTGM----VPS-LKCVTSVLSACADLSALK 165 (394)
Q Consensus 97 a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~----~~~-~~~~~~l~~~~~~~~~~~ 165 (394)
|+..|++..+.... .+ ..+++.+...|... |++++|+..|++..+... .+. ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999887764111 01 45788899999996 999999999998875311 111 356888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC-hh-----hHHHHHHHHh--hcCC
Q 016128 166 LGKETHGHVIRADLNKDE------SMATALISMYMKCGQPSWARRFFDQFEIKPDD-PA-----FWNAMISGYG--RNGE 231 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-----~~~~l~~~~~--~~~~ 231 (394)
+|...+++..+....... ..+..+..++...|++++|...|++.....|+ .. .+..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 999999999886543322 25677888999999999999999998764222 21 2344555554 4567
Q ss_pred hhhHHHHHHHHHH
Q 016128 232 YESAVEIFDLMQQ 244 (394)
Q Consensus 232 ~~~a~~~~~~~~~ 244 (394)
+++|+..|+++..
T Consensus 256 ~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 256 LSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHhccCCc
Confidence 8888888876644
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=8.1e-10 Score=80.55 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHh
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMML 90 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~ 90 (394)
.|..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|+++.. +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34455555556666666666666655543 33445555555555555666666665555443 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
.|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555554421 1344555555555555555555555555543
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=3.1e-10 Score=90.02 Aligned_cols=127 Identities=12% Similarity=0.035 Sum_probs=97.6
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (394)
+..+|.+.|++++|+..|++..+... -+...+..+...+...|++++|...|++..+. -+.+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 88888999999999999999888743 36788888999999999999999999998863 2345677888888776655
Q ss_pred c--HHHHHHHHHhCCCCChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 302 R--LDEARELIRELPEPTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 302 ~--~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
+ .+.+...++....|+.. .+.....++...|++++|+..|++++++.|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 3 45667778877776554 44555667777899999999999999999853
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=4.1e-10 Score=105.75 Aligned_cols=170 Identities=12% Similarity=0.006 Sum_probs=103.5
Q ss_pred hccchhhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhc
Q 016128 159 ADLSALKLGKETHGHVI--------RADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRN 229 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 229 (394)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|...|++.... |.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55666667776666665 322 234455666666666777777777777665443 55666666666677777
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
|++++|+..|++..+.... +...+..+..++...|++++ +..|++..+. -+.+...+..+..++.+.|++++|...
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776665322 45556666666666777766 6666666542 223455666666677777777777777
Q ss_pred HHhCCC--CChh-hHHHHHHHHHhcCC
Q 016128 310 IRELPE--PTVS-VYHSLLGACWCHLN 333 (394)
Q Consensus 310 ~~~~~~--~~~~-~~~~l~~~~~~~g~ 333 (394)
|++..+ |+.. .+..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 776665 5444 56666666555443
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=1.9e-10 Score=96.13 Aligned_cols=164 Identities=9% Similarity=-0.018 Sum_probs=127.8
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
|.+...+..+...+...|++++|+..|++..+... -+...+..+...+...|++++|...++.+... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence 35556677777888888888889888888887643 25677888888888889999999888888753 445433322
Q ss_pred -HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC--CchHHHHHHHHhhcC
Q 016128 293 -MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN--PTPFVILSNIYAGLG 366 (394)
Q Consensus 293 -l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 366 (394)
....+...++.++|...+++... |+.. .+..+...+...|++++|+..++++.+.+|.+ ...+..++.++...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22345667777778888887765 7766 88888999999999999999999999999877 778999999999999
Q ss_pred CcccHHHHHHHhhh
Q 016128 367 RWEDVGRIRQMIND 380 (394)
Q Consensus 367 ~~~~a~~~~~~m~~ 380 (394)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888877653
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=1e-10 Score=90.16 Aligned_cols=159 Identities=9% Similarity=0.025 Sum_probs=108.7
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH-
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL- 296 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 296 (394)
.+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+... .|++..+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 34555666777777777777777766543 225566677777777777777777777777643 2233333222211
Q ss_pred HHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC--CchHHHHHHHHhhcCCcccH
Q 016128 297 LGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN--PTPFVILSNIYAGLGRWEDV 371 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 371 (394)
+...++..+|...+++..+ |+.. .+..+..++...|++++|...|+++.+..|.. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1122222345666766654 6665 88888889999999999999999999988764 45888899999999999999
Q ss_pred HHHHHHhhh
Q 016128 372 GRIRQMIND 380 (394)
Q Consensus 372 ~~~~~~m~~ 380 (394)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887654
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=1.5e-09 Score=86.35 Aligned_cols=172 Identities=7% Similarity=-0.056 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC----CHHHHHHHHHHc
Q 016128 202 ARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG----HVDKALQIFTMM 277 (394)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~ 277 (394)
|.+.|++.... .++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|+..
T Consensus 5 A~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44444444332 455555566666666666666666666665543 44555555555555 4 666666666666
Q ss_pred hhcCCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHhCCCCCh-----hhHHHHHHHHHh----cCCchHHHHHHHHH
Q 016128 278 DDDFGLKPKQEHFGCMVDLLGR----SGRLDEARELIRELPEPTV-----SVYHSLLGACWC----HLNSDLGEEMAMKL 344 (394)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~ 344 (394)
.+. -++..+..|...|.. .+++++|..+|++..+.+. ..+..|...|.. .+++++|+..|+++
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 543 244555556666655 5667777777776666222 366666666666 66777777777777
Q ss_pred HhhCCCCCchHHHHHHHHhhc-C-----CcccHHHHHHHhhhccc
Q 016128 345 QEMEPENPTPFVILSNIYAGL-G-----RWEDVGRIRQMINDRQL 383 (394)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 383 (394)
.+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 766 45566777777777643 2 67777777777776654
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=2.9e-09 Score=84.65 Aligned_cols=174 Identities=11% Similarity=-0.011 Sum_probs=78.2
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHh
Q 016128 66 HNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG----MRFEAFKLFEKMQS 141 (394)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~ 141 (394)
.+.|++..+..++..+..+...|...+++++|+..|++..+.| ++.++..|...|.. + ++++|+.+|++..+
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444432 33444444444444 3 44555555554444
Q ss_pred CCCCCCHHHHHHHHHHhhc----cchhhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcC
Q 016128 142 TGMVPSLKCVTSVLSACAD----LSALKLGKETHGHVIRADLN-KDESMATALISMYMK----CGQPSWARRFFDQFEIK 212 (394)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 212 (394)
.| +...+..+...|.. .+++++|...+++..+.+.. .++..+..|...|.. .+++++|..+|++....
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 32 23334444444433 44444555554444443311 013444445555544 44555555555554443
Q ss_pred CCChhhHHHHHHHHhhc-C-----ChhhHHHHHHHHHHcC
Q 016128 213 PDDPAFWNAMISGYGRN-G-----EYESAVEIFDLMQQEK 246 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 246 (394)
+.++..+..|...|... | +.++|...|++..+.|
T Consensus 159 ~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 159 SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 33444444455544432 1 5555555555555544
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=1.1e-10 Score=107.74 Aligned_cols=161 Identities=11% Similarity=0.001 Sum_probs=127.3
Q ss_pred cCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 016128 196 CGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274 (394)
Q Consensus 196 ~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (394)
.|++++|...|++.... |.+...|..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999987655 6678889999999999999999999999998874 336788999999999999999999999
Q ss_pred HHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc---CCchHHHHHHHHHHhhC
Q 016128 275 TMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH---LNSDLGEEMAMKLQEME 348 (394)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 348 (394)
++..+. .+.+...+..+...|.+.|++++|.+.|++..+ |+.. .+..+..++... |+.++|.+.++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 344578899999999999999999999999876 6665 899999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 016128 349 PENPTPFVILS 359 (394)
Q Consensus 349 ~~~~~~~~~l~ 359 (394)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=2.8e-10 Score=104.96 Aligned_cols=161 Identities=11% Similarity=-0.010 Sum_probs=121.3
Q ss_pred cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHH
Q 016128 161 LSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIF 239 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (394)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...|++.... |.+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988765 336888999999999999999999999997665 667888999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc---CcHHHHHHHHHhCCC-
Q 016128 240 DLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS---GRLDEARELIRELPE- 315 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~- 315 (394)
++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++..+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998874 336788999999999999999999999999864 234577888999999999 999999999998876
Q ss_pred -CChh-hHHHHH
Q 016128 316 -PTVS-VYHSLL 325 (394)
Q Consensus 316 -~~~~-~~~~l~ 325 (394)
|+.. .|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 5544 554443
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.19 E-value=1.9e-09 Score=85.42 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=37.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 016128 84 MIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159 (394)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 159 (394)
+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455555555555555555555554322 45555555555555555555555555555432 223444444444443
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=1.8e-09 Score=86.78 Aligned_cols=186 Identities=11% Similarity=0.013 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChh---hHH
Q 016128 147 SLKCVTSVLSACADLSALKLGKETHGHVIRADLNK--DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPA---FWN 220 (394)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~~ 220 (394)
+...+..+...+...|++++|...|+++.+..... ....+..+..+|.+.|++++|...|+++... |.++. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556677788899999999999999998865322 2467778899999999999999999997664 44443 355
Q ss_pred HHHHHHhh------------------cCChhhHHHHHHHHHHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 221 AMISGYGR------------------NGEYESAVEIFDLMQQEKVKPNSA-SFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 221 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
.+..++.. .|++++|+..|+++.+. .|+.. ........ ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 55555543 57899999999999886 34432 22211110 01111111
Q ss_pred CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 282 GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
.....+...|.+.|++++|...|+++.+ |+.. .+..+..++.+.|+.++|.+.++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1123466788899999999999998876 5543 6888889999999999999999999888887654
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=1e-07 Score=79.46 Aligned_cols=218 Identities=11% Similarity=0.071 Sum_probs=152.8
Q ss_pred hhHh-HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC--ChhHHHHHHHHhcc--CCChhHHHHHHHHH----Hhc--
Q 016128 23 SLLY-LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG--CLPCAHNVFQELKG--SRNILTWNTMIAGM----MLN-- 91 (394)
Q Consensus 23 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~ll~~~----~~~-- 91 (394)
+.|. .++|+++++.++..+ |-+..+|+.--.++...| ++++++..++.+.. +.+..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 3343 457888888888877 666778888888888888 89999999888765 44555666544444 444
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-----
Q 016128 92 -GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF--EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA----- 163 (394)
Q Consensus 92 -~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----- 163 (394)
+++++++.+++.+.+...+ +..+|+.-.-++.+.|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 7888899999988887554 7888888777777888887 88888888887653 367777766666666665
Q ss_pred -hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH-HHHHHHHhhcC----CCChhhHHHHHHHHhhcCChhhHHH
Q 016128 164 -LKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW-ARRFFDQFEIK----PDDPAFWNAMISGYGRNGEYESAVE 237 (394)
Q Consensus 164 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (394)
++++.+.+..++...+ -|...++.+...+.+.|+... +..+.+++... +.++..+..++..|.+.|+.++|++
T Consensus 201 ~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 6777777777777653 367777777777777766433 44455554331 3455556667777777777777777
Q ss_pred HHHHHHH
Q 016128 238 IFDLMQQ 244 (394)
Q Consensus 238 ~~~~~~~ 244 (394)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=3.9e-09 Score=88.15 Aligned_cols=164 Identities=9% Similarity=-0.025 Sum_probs=81.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV 154 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 154 (394)
+.+...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 334444555555555666666666666665554222 4555555566666666666666666555443 2333222211
Q ss_pred -HHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC--hhhHHHHHHHHhhcC
Q 016128 155 -LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDD--PAFWNAMISGYGRNG 230 (394)
Q Consensus 155 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~ 230 (394)
...+...++.+.|...+++..... +.+...+..+...+...|++++|...|+++... |.+ ...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 122334444555555555555443 224445555555555555555555555554433 222 334555555555555
Q ss_pred ChhhHHHHHHHH
Q 016128 231 EYESAVEIFDLM 242 (394)
Q Consensus 231 ~~~~a~~~~~~~ 242 (394)
+.++|...|++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555443
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=1.2e-09 Score=84.08 Aligned_cols=159 Identities=9% Similarity=-0.024 Sum_probs=81.3
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHH-HHhc
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAG-MMLN 91 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~-~~~~ 91 (394)
+..+...+.+.|++++|...++..++.. |.+...+..+..++...|++++|+..|++... .|+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3444455556666666666666666554 44556666666666666666666666666543 2233222211111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccchhhHHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP-SLKCVTSVLSACADLSALKLGKET 170 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 170 (394)
+...+|+..+++..+.... +...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223345555555554221 45555556666666666666666666655543221 233444555555555555555555
Q ss_pred HHHH
Q 016128 171 HGHV 174 (394)
Q Consensus 171 ~~~~ 174 (394)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=8e-10 Score=82.53 Aligned_cols=110 Identities=8% Similarity=-0.050 Sum_probs=53.3
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~ 98 (394)
+...|++++|++.+....... +.+...+..+..+|.+.|++++|++.|++... +.+..+|..+...|.+.|++++|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 344555555555555544332 22233344455555555555555555555433 234444555555555555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEA 132 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 132 (394)
..|++..+.... +..+|..+...|.+.|++++|
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Confidence 555555544221 344455555555555554443
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=3.9e-08 Score=81.90 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=93.2
Q ss_pred CCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChh--hHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC------H
Q 016128 197 GQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYE--SAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH------V 267 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 267 (394)
++++++..+++.+... |.+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 4566666666665433 556666666666666666666 677777777666433 55555555555555454 6
Q ss_pred HHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH-HHHHHHhCCC-----CChh-hHHHHHHHHHhcCCchHHHHH
Q 016128 268 DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE-ARELIRELPE-----PTVS-VYHSLLGACWCHLNSDLGEEM 340 (394)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~ 340 (394)
+++++.++.+.. ..+-|...|+.+...+.+.|+... +..+..++.+ |... .+..++.++.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 666666666654 223455556655555655555333 3344444433 2222 666666667677777777777
Q ss_pred HHHHHh-hCCCCCchHHHHH
Q 016128 341 AMKLQE-MEPENPTPFVILS 359 (394)
Q Consensus 341 ~~~~~~-~~~~~~~~~~~l~ 359 (394)
++.+.+ .+|.+...|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 777765 5666655555443
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.12 E-value=1.4e-09 Score=91.89 Aligned_cols=221 Identities=12% Similarity=-0.008 Sum_probs=140.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARR 204 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (394)
..|++++|.+++++..+.. +.. .+...++++.|...|..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577888888888776531 110 011145666666665543 445667788888887
Q ss_pred HHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcC--C-CCC--HhhHHHHHHHHHccCCHHHHHH
Q 016128 205 FFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQEK--V-KPN--SASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 205 ~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
.|.+.... ..+ ..+|+.+...|...|++++|+..|++..+.- . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77764332 111 3357777788888888888888888765431 1 111 3466777777777 88888888
Q ss_pred HHHHchhcCCCCC----CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CC---hh-hHHHHHHHHHhcCCchHHHH
Q 016128 273 IFTMMDDDFGLKP----KQEHFGCMVDLLGRSGRLDEARELIRELPE-----PT---VS-VYHSLLGACWCHLNSDLGEE 339 (394)
Q Consensus 273 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~-~~~~l~~~~~~~g~~~~a~~ 339 (394)
.+++..+...-.. ...++..+...|.+.|++++|+..|++... ++ .. .+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887764311011 135677778888888888888888887765 11 12 55666677777788888888
Q ss_pred HHHHHHhhCCCCCch-----HHHHHHHHhhcCCcccHHH
Q 016128 340 MAMKLQEMEPENPTP-----FVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 340 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~ 373 (394)
.|+++. ..|..... ...++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888888 77765443 33344444 4566555444
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=5.9e-08 Score=87.17 Aligned_cols=123 Identities=14% Similarity=0.045 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH-AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
|...+....+.++.+.|..+|++. +. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++..+...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 444444444455555555565555 21 11122223221111111 124555556665555432 12233344444544
Q ss_pred HhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 298 GRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
.+.|+.+.|..+|+++.. ....|...+..-...|+.+.+..++++..+
T Consensus 365 ~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555556666655531 222555555554555555555555555543
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=3.1e-10 Score=94.50 Aligned_cols=93 Identities=8% Similarity=-0.070 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.+..+...+...|++++|...|++.... |.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444455555555555443322 3344444455555555555555555555544432 1133444444455555
Q ss_pred cCCHHHHHHHHHHch
Q 016128 264 AGHVDKALQIFTMMD 278 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~ 278 (394)
.|++++|...|+...
T Consensus 85 ~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 85 MESYDEAIANLQRAY 99 (281)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555554443
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=2.8e-10 Score=84.66 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=77.7
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...+..+...+.+.|++++|...|++... |+.. .|..+..++...|++++|+..|+++.+++|.++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 44566677778888888888888888775 6666 88888888888888888888888888888888888888888888
Q ss_pred hcCCcccHHHHHHHhhhcc
Q 016128 364 GLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~ 382 (394)
+.|++++|+..|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877654
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.08 E-value=1.1e-09 Score=79.05 Aligned_cols=108 Identities=7% Similarity=-0.069 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGAC 328 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~ 328 (394)
..+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|++..+ |+.. .|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34555666677777777777777776652 234566667777777777777777777777665 5555 777777778
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
...|++++|++.|+++.+++|.++.++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888777776666544
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=2.6e-09 Score=84.90 Aligned_cols=128 Identities=14% Similarity=-0.010 Sum_probs=103.1
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
.+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...++..... .+.+...+..+...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 35566777888899999999888773 567888888888899999999999999888763 244667888888889
Q ss_pred HhcCcHHHHHHHHHhCCC--CC----------------h-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 298 GRSGRLDEARELIRELPE--PT----------------V-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~--~~----------------~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
...|++++|...|++..+ |+ . ..+..+..++...|++++|...++++.+..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999988887764 21 2 377888888888999999999999998888865
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=1.8e-08 Score=85.09 Aligned_cols=226 Identities=10% Similarity=-0.033 Sum_probs=147.5
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFE 102 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 102 (394)
..|++++|.+++++..+... .. .+...++++.|...|.+. ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 46889999999998876542 11 011146777777777664 345667788888888777
Q ss_pred HHHhc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHH
Q 016128 103 GLAHE----GFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 103 ~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
+..+. |-.+ -..+|+.+...|...|++++|+..|++..+. |-.. ...++..+..+|.. |++++|...++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 76543 1111 1446777888888888888888888776532 2111 13466777777877 88888888888
Q ss_pred HHHHcCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHH
Q 016128 173 HVIRADLNK-----DESMATALISMYMKCGQPSWARRFFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 173 ~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
+..+..... ...++..+...|...|++++|...|++.... ... ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 776542111 1456777888888999999999888876542 111 2245666677778899999999999
Q ss_pred HHHHcCCCC-CH---hhHHHHHHHHHccCCHHHHHHH
Q 016128 241 LMQQEKVKP-NS---ASFVAVLSACGHAGHVDKALQI 273 (394)
Q Consensus 241 ~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~~ 273 (394)
+.. ..... +. .....++.++ ..++.+.+..+
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 887 42111 11 2344555555 56777776663
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=1.1e-08 Score=85.81 Aligned_cols=159 Identities=7% Similarity=-0.068 Sum_probs=106.8
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCC-CCCHh----hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHH
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKV-KPNSA----SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGC 292 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 292 (394)
.+..+...|++++|...+++..+... .|+.. .+..+...+...+++++|...++...+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566677777777777777765321 12211 2234555566667778888777777653111222 225777
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC------CchHH
Q 016128 293 MVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN------PTPFV 356 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 356 (394)
+...|...|++++|...|+++.+ +... ++..+...|...|++++|+..++++.++.+.. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77778888888888777777652 2222 77888888889999999999998888765322 45688
Q ss_pred HHHHHHhhcCC-cccHHHHHHHhhh
Q 016128 357 ILSNIYAGLGR-WEDVGRIRQMIND 380 (394)
Q Consensus 357 ~l~~~~~~~g~-~~~a~~~~~~m~~ 380 (394)
.++.++.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999985 5888888887754
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=9.5e-08 Score=80.01 Aligned_cols=204 Identities=11% Similarity=0.016 Sum_probs=139.5
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 136 FEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESM---ATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 136 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
+.++......|+..+...+...+.-.-+ .+.......+... +...+..+...|++++|...+++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444433346777776666665543211 1111111222222 233467788899999999999987765
Q ss_pred CC-Chh------hHHHHHHHHhhcCChhhHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 213 PD-DPA------FWNAMISGYGRNGEYESAVEIFDLMQQEKVK-PN----SASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 213 ~~-~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
.+ ++. .+..+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 222 2345677777888999999999999874322 22 236888999999999999999999988742
Q ss_pred C----CCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--------CChh-hHHHHHHHHHhcCC-chHHHHHHHHHH
Q 016128 281 F----GLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--------PTVS-VYHSLLGACWCHLN-SDLGEEMAMKLQ 345 (394)
Q Consensus 281 ~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~g~-~~~a~~~~~~~~ 345 (394)
. +..+ ...++..+...|.+.|++++|...+++..+ +... +|..+..++...|+ +++|.+.++++.
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 1111 134678888999999999999999988764 2223 88899999999995 599999999988
Q ss_pred hhC
Q 016128 346 EME 348 (394)
Q Consensus 346 ~~~ 348 (394)
.+.
T Consensus 265 ~i~ 267 (293)
T 3u3w_A 265 FFF 267 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 744
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.02 E-value=2.8e-08 Score=83.24 Aligned_cols=161 Identities=7% Similarity=-0.059 Sum_probs=100.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-----hhHHHHHHHHHccCCHHHHHHHHHHchhcCC--CCCC--Hhh
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS-----ASFVAVLSACGHAGHVDKALQIFTMMDDDFG--LKPK--QEH 289 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~ 289 (394)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+... ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 444555666677777777777666554222111 1233344555666777777777776654211 1111 336
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC-----CC----h-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--C----Cc
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE-----PT----V-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--N----PT 353 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~----~~ 353 (394)
++.+...|...|++++|...|++..+ |+ . .++..+...|...|++++|+..++++.+..+. + ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 66777777777777777777776652 22 1 36777777788888888888888877765421 1 34
Q ss_pred hHHHHHHHHhhcCCcccH-HHHHHHhh
Q 016128 354 PFVILSNIYAGLGRWEDV-GRIRQMIN 379 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a-~~~~~~m~ 379 (394)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 567778888888888888 66666654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.00 E-value=3.6e-09 Score=80.32 Aligned_cols=126 Identities=7% Similarity=-0.081 Sum_probs=86.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACW 329 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~ 329 (394)
.+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++... |+.. .+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455555666666666666666666542 233455666666677777777777777766654 4444 7777778888
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHH--HhhcCCcccHHHHHHHhhh
Q 016128 330 CHLNSDLGEEMAMKLQEMEPENPTPFVILSNI--YAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 380 (394)
..|++++|...++++.+..|.++..+..+..+ +.+.|++++|+..++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888888888777776444444 6677888888888776643
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=1.7e-09 Score=77.97 Aligned_cols=95 Identities=7% Similarity=0.026 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
..+......|.+.|++++|++.|++..+ |+.. .|..+..++...|++++|+..++++++++|.++.+|..++.++..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4677788999999999999999999876 7666 999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHhhhcc
Q 016128 365 LGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~ 382 (394)
.|++++|++.|++..+..
T Consensus 94 ~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD 111 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 999999999999988753
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=5.6e-10 Score=83.15 Aligned_cols=101 Identities=11% Similarity=-0.085 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGAC 328 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~ 328 (394)
..+..+...+...|++++|...|+..... -+.+...+..+..+|...|++++|...|++... |+.. .+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555556666666666666666666542 233455566666666666666666666666654 4444 666666666
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
...|++++|+..|+++.+..|.++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 66666666666666666666655544
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=5.8e-09 Score=75.45 Aligned_cols=117 Identities=13% Similarity=-0.024 Sum_probs=86.9
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA 327 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~ 327 (394)
...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++..+ |+.. .+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666667777777777777776653 233556667777777777777777777777665 5544 77888888
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (394)
+...|++++|...++++.+..|.++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888899999999999998888888888888888888877753
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=5.9e-08 Score=76.99 Aligned_cols=128 Identities=8% Similarity=-0.141 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 128 (394)
+..+...+...|++++|+..|++.. +++...|..+...+...|++++|+..|++..+... .+..+|..+..+|...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHccc
Confidence 3445556666777777777777766 55666777777777777777777777777766532 256667777777777777
Q ss_pred HHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcC
Q 016128 129 RFEAFKLFEKMQSTGMV--------------P-SLKCVTSVLSACADLSALKLGKETHGHVIRAD 178 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 178 (394)
+++|+..|++..+.... | ....+..+..++...|++++|...++...+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777776653211 1 11445555566666666666666666665543
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=6.3e-09 Score=75.62 Aligned_cols=114 Identities=10% Similarity=-0.021 Sum_probs=77.0
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA 327 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~ 327 (394)
...+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++..+ |+.. .+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345555566666666666666666666542 223455666666666666777777666666654 4444 77777778
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
+...|++++|.+.++++.+..|.+...+..++.++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888877777877777776655
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.96 E-value=3.9e-10 Score=88.72 Aligned_cols=94 Identities=10% Similarity=-0.094 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
..+..+..+|.+.|++++|...+++... |+.. .+..+..++...|++++|+..|+++.+..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5677788888899999999999888876 6555 888999999999999999999999999999999999999999999
Q ss_pred cCCcccHH-HHHHHhhhc
Q 016128 365 LGRWEDVG-RIRQMINDR 381 (394)
Q Consensus 365 ~g~~~~a~-~~~~~m~~~ 381 (394)
.++.+++. ..+..|...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888877 556655543
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=1.1e-08 Score=73.29 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=78.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA 327 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~ 327 (394)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|..+++++.. |+.. ++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345556666666667777777766666543 233455666666777777777777777766654 4444 77777788
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888777777777665543
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.93 E-value=1.5e-06 Score=73.22 Aligned_cols=167 Identities=8% Similarity=-0.012 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC-ChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc-C-CHHHHHHHH
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG-CLPCAHNVFQELKG--SRNILTWNTMIAGMMLN-G-RSEKAMELF 101 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~-~-~~~~a~~~~ 101 (394)
.++|+++++.++..+ +-+..+|+.--.++...| .+++++..++.+.. +.+..+|+.-...+.+. + +++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 345666666666555 444555555555555555 36666666665543 33444555544444444 4 556666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-------hhH
Q 016128 102 EGLAHEGFKPDPATWNSMISGFSQLGMRF--------EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA-------LKL 166 (394)
Q Consensus 102 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 166 (394)
+.+.+...+ |..+|+.-.-++.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 666655333 5555554444444444443 5555555555543 2244555554444444443 344
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016128 167 GKETHGHVIRADLNKDESMATALISMYMKCG 197 (394)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (394)
+.+.+.+++...+ -|...++.+-..+.+.|
T Consensus 227 ELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 227 ELIYILKSIHLIP-HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 4444444444432 24444444444444333
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=3e-08 Score=80.77 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=66.8
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC--HhhHHHHHHHHH
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK--QEHFGCMVDLLG 298 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 298 (394)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 34455555666666666665555432 33223334444555556666666666544321 0 110 124445555566
Q ss_pred hcCcHHHHHHHHHhCCC-C---C-hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 299 RSGRLDEARELIRELPE-P---T-VS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~-~---~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
+.|++++|+..|++... | . .. .......++.+.|+.++|...|+++...+|. +.....|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 66666666666665532 2 1 11 4444555555666666666666666666654 4333333
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.91 E-value=3.6e-09 Score=78.18 Aligned_cols=97 Identities=13% Similarity=-0.061 Sum_probs=44.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~ 331 (394)
..+...+...|++++|...|+..... -+.+...+..+..+|.+.|++++|...|++... |+.. .+..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33344444445555555555544431 122334444444444455555555555444443 3333 444444444455
Q ss_pred CCchHHHHHHHHHHhhCCCCCc
Q 016128 332 LNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
|++++|...|+++.+..|.++.
T Consensus 100 g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCcc
Confidence 5555555555555444444433
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=7.5e-09 Score=88.48 Aligned_cols=125 Identities=10% Similarity=-0.067 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----------------HhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----------------QEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
..+..+...+...|++++|...|++.... .|+ ...+..+..+|.+.|++++|+..+++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555432 111 46778888888889999999988888876
Q ss_pred --CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccH-HHHHHHhh
Q 016128 316 --PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDV-GRIRQMIN 379 (394)
Q Consensus 316 --~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 379 (394)
|+.. .|..+..++...|++++|+..|+++.++.|.++.++..++.++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 8889999999999999999999999999999999999999999999999988 44555553
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.91 E-value=3e-09 Score=79.17 Aligned_cols=95 Identities=13% Similarity=-0.003 Sum_probs=67.0
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...+..+...+.+.|++++|...|++... |+.. .|..+..++...|++++|+..|+++.+.+|.++..+..++.++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34555666677777777777777776654 5544 66777777777777777777777777777777777777777777
Q ss_pred hcCCcccHHHHHHHhhhc
Q 016128 364 GLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (394)
..|++++|+..+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776654
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=3.6e-09 Score=81.44 Aligned_cols=127 Identities=9% Similarity=0.078 Sum_probs=101.1
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH-HHhcCcH-
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL-LGRSGRL- 303 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 303 (394)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++...+. .+.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 456789999999999988764 346788889999999999999999999998763 23466777788888 7788998
Q ss_pred -HHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchH
Q 016128 304 -DEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPF 355 (394)
Q Consensus 304 -~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 355 (394)
++|...+++..+ |+.. .+..+...+...|++++|...++++.+..|.++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999998876 6655 888888999999999999999999999998876544
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.89 E-value=2.8e-08 Score=82.64 Aligned_cols=190 Identities=10% Similarity=-0.038 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHH
Q 016128 148 LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGY 226 (394)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~ 226 (394)
...+..+...+...|++++|...+++..+... .+...+..+..+|.+.|++++|...+++.... |.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455555556666666666666666655532 25666677777777777777777777775554 55666677777777
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 016128 227 GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (394)
...|++++|+..|++..+.... +...+...+....+ ..++... ...... ..+.+......+... ..|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRW-NSIEER-RIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHH-HHHHHT-CCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHH-HHHHHH-HHhhhHHHHHHHHHH--HHHHHHHH
Confidence 7888888888877776654211 11111111111111 1111111 112122 334444444443322 25777888
Q ss_pred HHHHHhCCC--CChh-hHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 016128 307 RELIRELPE--PTVS-VYHSLLGACWCH-LNSDLGEEMAMKLQE 346 (394)
Q Consensus 307 ~~~~~~~~~--~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 346 (394)
.+.+++..+ |+.. ....+...+.+. +.++++.++|+++.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 877777665 5444 444444444443 556777777777765
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=1.2e-07 Score=79.44 Aligned_cols=164 Identities=5% Similarity=-0.096 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--H
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-----PATWNSMISGFSQLGMRFEAFKLFEKMQSTGM---VPS--L 148 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~ 148 (394)
..+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566677777888888877777666432211 12233455556677777777777777664311 111 3
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHhhcCC---C----C
Q 016128 149 KCVTSVLSACADLSALKLGKETHGHVIRA--DLNKD----ESMATALISMYMKCGQPSWARRFFDQFEIKP---D----D 215 (394)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~----~ 215 (394)
.+++.+...|...|++++|...++++.+. ..+.+ ..++..+...|...|++++|...+++..... . -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35666666666777777777776666521 01111 1355566666666666666666666543210 0 1
Q ss_pred hhhHHHHHHHHhhcCChhhH-HHHHHHH
Q 016128 216 PAFWNAMISGYGRNGEYESA-VEIFDLM 242 (394)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 242 (394)
..+|..+..+|...|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33455566666666666666 5545544
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=4e-08 Score=75.50 Aligned_cols=121 Identities=9% Similarity=0.008 Sum_probs=97.5
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHH-HHhcCCH--H
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAG-MMLNGRS--E 95 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~-~~~~~~~--~ 95 (394)
+...|+++.|...++...+.. +.+...+..+..++...|++++|+..|++... +.+...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 456788999999999988776 66788899999999999999999999998765 4567778888888 7788998 9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG 143 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 143 (394)
+|...+++..+.... +...+..+...|...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999998887433 67788888999999999999999999988753
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=1.1e-07 Score=71.92 Aligned_cols=127 Identities=9% Similarity=-0.043 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 124 (394)
..+..+...+...|++++|...|++... +.+...+..+...+...|++++|...+++..+... .+..++..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 3455566666667777777777766543 34556666666777777777777777777666532 25666677777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHhhccchhhHHHHHHHHHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVT--SVLSACADLSALKLGKETHGHVI 175 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 175 (394)
..|++++|...|++..+.. +.+...+. .....+...|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766542 22333332 23333556677777777766554
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.87 E-value=1e-08 Score=71.92 Aligned_cols=98 Identities=10% Similarity=0.013 Sum_probs=75.4
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CCchHHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--NPTPFVILSN 360 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 360 (394)
+...+..+...+...|++++|...|++..+ |+.. .+..+..++...|++++|+..++++.+..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 344566667777777788888777777654 4444 7777888888888888888888888888888 7788888888
Q ss_pred HHhhc-CCcccHHHHHHHhhhccc
Q 016128 361 IYAGL-GRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 361 ~~~~~-g~~~~a~~~~~~m~~~~~ 383 (394)
++.+. |++++|.+.++.......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 888888888888876543
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=7.2e-09 Score=74.73 Aligned_cols=94 Identities=12% Similarity=-0.037 Sum_probs=48.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACW 329 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~ 329 (394)
.+..+...+...|++++|...|+...+. .+.+...+..+..+|.+.|++++|...+++..+ |+.. .|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444455555555555555555555442 122344555555555555555555555555443 3333 5555555555
Q ss_pred hcCCchHHHHHHHHHHhhC
Q 016128 330 CHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~ 348 (394)
..|++++|+..++++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 5555555555555555555
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=1.7e-08 Score=75.03 Aligned_cols=97 Identities=14% Similarity=-0.042 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+...+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..|++..+..+. ++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 344555666666666666666666666554 345556666666666666666666666666665322 45566666666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 016128 123 FSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~ 142 (394)
|...|++++|+..|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=8.4e-09 Score=74.47 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc-------hHHHHH
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT-------PFVILS 359 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 359 (394)
+..+...+.+.|++++|+..|++..+ |+.. .|..+..+|...|++++|++.+++++++.|.++. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 44455555555555555555555544 4444 5555555555666666666666665555544432 344445
Q ss_pred HHHhhcCCcccHHHHHHHhhh
Q 016128 360 NIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.++...|++++|++.+++...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555566666666555544
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.84 E-value=3.9e-06 Score=70.76 Aligned_cols=172 Identities=9% Similarity=0.032 Sum_probs=118.5
Q ss_pred HhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-CHHH
Q 016128 57 LKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNG-RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL-G-MRFE 131 (394)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~-~~~~ 131 (394)
.+.+..++|+++++.+.. +.+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 344555688999888775 345566777777777777 599999999999987655 778888877777666 6 7889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----
Q 016128 132 AFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK--------LGKETHGHVIRADLNKDESMATALISMYMKCGQ----- 198 (394)
Q Consensus 132 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 198 (394)
++++++++.+.. +-|...|+.-..++.+.+.++ ++.+.++++++.++ -|...++.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccch
Confidence 999999988764 346777776666666666665 77777777777653 366666666666666654
Q ss_pred --chHHHHHHHHhh-cCCCChhhHHHHHHHHhhcCC
Q 016128 199 --PSWARRFFDQFE-IKPDDPAFWNAMISGYGRNGE 231 (394)
Q Consensus 199 --~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 231 (394)
++++.+.+++.. ..|.|...|+-+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 455666665533 336666666666555555554
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=7.3e-09 Score=74.04 Aligned_cols=94 Identities=11% Similarity=-0.104 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
.+..+...+.+.|++++|...|++..+ |+.. .|..+..++...|++++|+..++++.+++|.++..+..++.++.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 455667788899999999999998876 7666 8889999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHhhhcc
Q 016128 366 GRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 366 g~~~~a~~~~~~m~~~~ 382 (394)
|++++|+..+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.83 E-value=3.3e-08 Score=80.50 Aligned_cols=185 Identities=9% Similarity=-0.070 Sum_probs=94.1
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHH-------HHHHHhcCChhHHHHHHHHhcc-CC-------C----------
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTAL-------VDMYLKCGCLPCAHNVFQELKG-SR-------N---------- 77 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~-~~-------~---------- 77 (394)
..++...|.+.|..+.+.. |.....|..+ ...+.+.++..+++..+.+-.. .| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566777777777777665 4556666665 4555555555555555544332 11 1
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHH
Q 016128 78 -----ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS--LKC 150 (394)
Q Consensus 78 -----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~ 150 (394)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0112334555666666666666666665542 332244445556666666666666665433221 110 123
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHhhc
Q 016128 151 VTSVLSACADLSALKLGKETHGHVIRADLNKD--ESMATALISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555555543222122 22333444455555555555555555444
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.82 E-value=2.1e-06 Score=71.98 Aligned_cols=194 Identities=13% Similarity=0.011 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--chHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCC-hhhHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQ--PSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGE-YESAVEIFD 240 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 240 (394)
+++..+++.+..... .+..+|+.-...+...|+ ++++..+++.+... |.|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 444444444444332 244444444444444442 44555555554332 4445555554444444454 355555555
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHcc--------------CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc------
Q 016128 241 LMQQEKVKPNSASFVAVLSACGHA--------------GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS------ 300 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 300 (394)
++.+..+. |...|+.....+... +.++++++.+...... .+-|...|+.+-..+.+.
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcccc
Confidence 55554322 444444433333322 3355566666555542 233444444333333332
Q ss_pred -----CcHHHHHHHHHhCCC--CChh-hHHHHHH---HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 301 -----GRLDEARELIRELPE--PTVS-VYHSLLG---ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 301 -----g~~~~a~~~~~~~~~--~~~~-~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
+.++++++.++++.+ |+.. .+..++. +....|..+++...+.++.+++|....-|..+...+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 456777777777776 6654 3333221 222356777888888888888887777676665443
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=1.7e-07 Score=66.85 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
...+..+...+...|++++|.+.|+++.. +.+..++..+...+...|++++|...++++..... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 34455555555555666666666555443 23444555555666666666666666666555422 2455556666666
Q ss_pred HccCCHHHHHHHHHHHHhC
Q 016128 124 SQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~ 142 (394)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666665554
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=1.2e-07 Score=74.39 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC--CHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQE----KVKP--NSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
+..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555555555555555544332 1011 12234444455555555555555555443
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.81 E-value=4.8e-08 Score=69.05 Aligned_cols=108 Identities=15% Similarity=0.038 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGAC 328 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~ 328 (394)
..+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++..+ |+.. .+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555555666666666666665542 223455555566666666666666666665544 4433 666666677
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777666555555443
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=3.1e-08 Score=84.64 Aligned_cols=147 Identities=8% Similarity=-0.049 Sum_probs=89.8
Q ss_pred HhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC----------------hhHHHHHHHH
Q 016128 25 LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN----------------ILTWNTMIAG 87 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------------~~~~~~ll~~ 87 (394)
++++.|.+.++...+.. +.+...+..+...+.+.|++++|+..|++... .|+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444332 23455667777777777777777777777654 232 3566666677
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG 167 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 167 (394)
+.+.|++++|+..+++..+.... +..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776665322 56666666777777777777777777666542 23455566666666666666655
Q ss_pred -HHHHHHH
Q 016128 168 -KETHGHV 174 (394)
Q Consensus 168 -~~~~~~~ 174 (394)
...++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344443
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.2e-08 Score=71.26 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
..+..+...+.+.|++++|...|++..+ |+.. .|..+..++...|++++|+..++++.+.+|.++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4455666677777777777777777665 5554 777777777777777777777777777777777777777777777
Q ss_pred cCCcccHHHHHHHhhhc
Q 016128 365 LGRWEDVGRIRQMINDR 381 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~ 381 (394)
.|++++|+..+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 77777777777776654
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.80 E-value=2.5e-08 Score=72.93 Aligned_cols=99 Identities=7% Similarity=-0.171 Sum_probs=61.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHH
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLG 326 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~ 326 (394)
+...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++... |+.. .+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666666666666666666666542 233455666666666666666666666666554 4444 6666666
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCC
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
++...|++++|+..++++.+..|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666666666666666666666554
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.80 E-value=5.8e-08 Score=73.55 Aligned_cols=108 Identities=16% Similarity=0.020 Sum_probs=80.1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHH
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLG 326 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~ 326 (394)
+...+..+...+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+..|++..+ |+.. .|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455666667777777777777777777653 233566777777778888888888888877765 5555 8888888
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (394)
++...|++++|+..|+++.++.|.++..+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888999999999998888888887654443
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=2.5e-08 Score=73.57 Aligned_cols=95 Identities=11% Similarity=-0.063 Sum_probs=72.7
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...+..+...+.+.|++++|...|++... |+.. .|..+..++...|++++|+..|+++.+.+|.++..+..++.++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34555666777788888888888877765 5555 77777788888888888888888888888888888888888888
Q ss_pred hcCCcccHHHHHHHhhhc
Q 016128 364 GLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (394)
..|++++|+..+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777654
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.79 E-value=1e-07 Score=68.77 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+...+..+...+...|++++|...|++... +.+...+..+...+...|++++|...++....... .+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 344555566666666666666666666543 33455566666666666677777666666665532 245566666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 677777777777776666542 2244555555555555554
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.78 E-value=1.6e-08 Score=76.70 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=89.9
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 285 PKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
.+...+..+...+.+.|++++|+..|++..+ |+.. .|..+..++...|++++|+..++++++++|.++..+..++.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456788888999999999999999999886 6666 999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccHHHHHHHhhhcc
Q 016128 362 YAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.+.|++++|+..+++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999988753
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.77 E-value=1.7e-07 Score=73.56 Aligned_cols=131 Identities=10% Similarity=0.009 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHc----CCC--C
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHGHVIRA----DLN--K 181 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 181 (394)
..++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+. +.. .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444555555555555555555444321 1111 1223333444444444444444444443322 000 0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCCh----hhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK---PDDP----AFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
....+..+...+...|++++|...+++.... ..++ .++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1223344445555555555555555443211 1111 123445555555666666665555543
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=1.3e-07 Score=68.43 Aligned_cols=116 Identities=8% Similarity=-0.010 Sum_probs=72.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
+.+...+..+...+.+.|++++|...|++... +.+...+..+...+...|++++|+..+++..+... .+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 34455666666677777777777777776554 33556666666777777777777777777666532 2566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
.++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 77777777777777777766542 2233444455544443
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.5e-07 Score=69.64 Aligned_cols=111 Identities=14% Similarity=-0.084 Sum_probs=74.2
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHH
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYH 322 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~ 322 (394)
+...+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...+++..+ |+.. .+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3455556666666666677776666666532 344 45566666677777777777777766654 4444 677
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.+..++...|++++|...++++.+..|.++..+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777778888888888888888888877766666655543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.70 E-value=5.3e-08 Score=71.15 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=50.4
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
+...+..+...+...|++++|...|++... |+.. .|..+..++...|++++|+..++++.+..|.++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344455555555555555555555555443 3333 5555555555555555555555555555555555555555555
Q ss_pred hhcCCcccHHHHHHHhhh
Q 016128 363 AGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~ 380 (394)
...|++++|+..++++.+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555443
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=1.2e-07 Score=74.39 Aligned_cols=147 Identities=12% Similarity=-0.036 Sum_probs=76.9
Q ss_pred HHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCh----------------hH
Q 016128 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNI----------------LT 80 (394)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----------------~~ 80 (394)
......|+++.+.+.++.-.... ......+..+...+.+.|++++|+..|++... +.+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444566666666665433222 22445566666777777777777777776653 1122 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
|..+..++.+.|++++|+..++...+... .+..++..+..+|...|++++|+..|++..+.. +-+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 55566666666666666666666665522 245566666666666666666666666665542 2234445555555554
Q ss_pred cchhhHHH
Q 016128 161 LSALKLGK 168 (394)
Q Consensus 161 ~~~~~~a~ 168 (394)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444443
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.65 E-value=2e-07 Score=65.09 Aligned_cols=99 Identities=10% Similarity=-0.041 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--hh-hHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT--VS-VYHSLLG 326 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~-~~~~l~~ 326 (394)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++..+ |+ .. .+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34444555555556666666666555542 123445555566666666666666666665544 44 33 6667777
Q ss_pred HHHhc-CCchHHHHHHHHHHhhCCCCC
Q 016128 327 ACWCH-LNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 327 ~~~~~-g~~~~a~~~~~~~~~~~~~~~ 352 (394)
++... |++++|.+.++++....|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777777777777777776553
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.65 E-value=1.4e-07 Score=84.17 Aligned_cols=128 Identities=11% Similarity=-0.058 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC-------------CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP-------------KQEHFGCMVDLLGRSGRLDEARELIRELPE--P 316 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 316 (394)
..+..+...+.+.|++++|...|++..+...-.+ ....|..+..+|.+.|++++|+..+++..+ |
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455555566666666666666666554211111 046778888889999999999999998876 6
Q ss_pred Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHH-HHHHhh
Q 016128 317 TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR-IRQMIN 379 (394)
Q Consensus 317 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 379 (394)
+.. .|..+..+|...|++++|+..|+++.++.|.+..++..+..++.+.|+++++.+ .++.|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 888999999999999999999999999999999999999999999998887764 444443
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.64 E-value=6.5e-08 Score=86.74 Aligned_cols=117 Identities=8% Similarity=-0.079 Sum_probs=88.3
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS 334 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~ 334 (394)
...+.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|...+++..+ |+.. .|..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33455667777777777777653 233466777777788888888888888877765 5555 888888999999999
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHH--HhhcCCcccHHHHHH
Q 016128 335 DLGEEMAMKLQEMEPENPTPFVILSNI--YAGLGRWEDVGRIRQ 376 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 376 (394)
++|++.++++.+..|.++..+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999888888887 888899999999888
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=1.7e-06 Score=60.82 Aligned_cols=95 Identities=15% Similarity=-0.008 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 124 (394)
..+..+...+...|++++|...|++... +.+...+..+...+...|++++|...+++..+.... +...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3444555555556666666666655443 234455555556666666666666666665554221 4555666666666
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 016128 125 QLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~ 142 (394)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666666554
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.2e-07 Score=68.77 Aligned_cols=98 Identities=15% Similarity=0.007 Sum_probs=89.1
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh---h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 285 PKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTV---S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
.+...+..+...+...|++++|...|++..+ |+. . .+..+..++...|++++|+..++++.+..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4567788889999999999999999999876 664 4 888999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcccHHHHHHHhhhcc
Q 016128 359 SNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 359 ~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.++...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988754
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.6e-07 Score=81.06 Aligned_cols=161 Identities=9% Similarity=-0.104 Sum_probs=79.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHh----hHHHHHHHHHccCCHHHHHHHHHHchhcC---CCCC-CHhh
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSA----SFVAVLSACGHAGHVDKALQIFTMMDDDF---GLKP-KQEH 289 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 289 (394)
+..+...|...|++++|.+.+.++...- ..++.. +.+.+...+...|+++++..+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555556666666665555543311 011111 11222222334455666655555443210 1111 1334
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CC-----c
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--NP-----T 353 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~-----~ 353 (394)
+..+...|...|++++|..++++... +... ++..++..|...|++++|..+++++....+. ++ .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 55566666666666666666554432 2222 5666666666667777776666666654311 11 2
Q ss_pred hHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 354 PFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555666666666666665554
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.61 E-value=1.9e-07 Score=67.30 Aligned_cols=107 Identities=10% Similarity=0.011 Sum_probs=58.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--------hhhHHH
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT--------VSVYHS 323 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--------~~~~~~ 323 (394)
+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++... |+ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444444555555555555554432 122344444555555555555555555554443 11 225666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
+..++...|++++|.+.++++.+..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 67777777777777777777777766 4555555544443
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=1.1e-05 Score=67.65 Aligned_cols=180 Identities=13% Similarity=0.024 Sum_probs=132.4
Q ss_pred chHHHHHHHHhhc-CCCChhhHHHHHHHHhhcC--ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC-HHHHHHHH
Q 016128 199 PSWARRFFDQFEI-KPDDPAFWNAMISGYGRNG--EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH-VDKALQIF 274 (394)
Q Consensus 199 ~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 274 (394)
++++..+++.+.. .|.+..+|+.-...+...+ ++++++.+++++.+.... |...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677888877654 4788888998888888888 489999999999998644 77888877777777887 68999999
Q ss_pred HHchhcCCCCCCHhhHHHHHHHHHhc--------------CcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc------
Q 016128 275 TMMDDDFGLKPKQEHFGCMVDLLGRS--------------GRLDEARELIRELPE--PTVS-VYHSLLGACWCH------ 331 (394)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~------ 331 (394)
..+.+. -+-|...|+.....+.+. +.++++++.+.+... |++. .|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999874 345666676665555544 568889999988876 7777 777555444443
Q ss_pred -----CCchHHHHHHHHHHhhCCCCCchHHHHHHHH---hhcCCcccHHHHHHHhhhc
Q 016128 332 -----LNSDLGEEMAMKLQEMEPENPTPFVILSNIY---AGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 332 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 381 (394)
+.++++++.++++.+..|++.-++..++... ...|..+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3578999999999999998844443333221 2456777888888888754
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.58 E-value=1.5e-06 Score=62.50 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHHHH
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF--KPD----PATWNSM 119 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~l 119 (394)
.+..+...+.+.|++++|+..|++... +.+...|+.+..+|.+.|++++|++.+++..+... .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344455555555555555555555443 33444555555555555555555555555544211 111 1244445
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.58 E-value=1.7e-07 Score=67.57 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=73.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH---hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh---h-hHHHH
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ---EHFGCMVDLLGRSGRLDEARELIRELPE--PTV---S-VYHSL 324 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~-~~~~l 324 (394)
+..+...+...|++++|...|+.+.+. .+.+. ..+..+..++.+.|++++|...|++... |+. . .+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 344566777788888888888887764 12222 4666777788888888888888887765 554 3 67777
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 325 LGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
..++...|++++|...++++.+..|.++......
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 7888888888888888888888887765544433
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.58 E-value=1.9e-07 Score=68.73 Aligned_cols=61 Identities=15% Similarity=-0.012 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhh-------CCCCCchH----HHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEM-------EPENPTPF----VILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555566666666666666555 66665566 6666666666666666666665544
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.57 E-value=2.2e-07 Score=66.24 Aligned_cols=96 Identities=9% Similarity=-0.053 Sum_probs=58.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC 330 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~ 330 (394)
+..+...+.+.|++++|...++...+. -+.+...+..+..++...|++++|+..|++..+ |+.. .+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344455566666777777766666642 233455666666666677777777777766654 5544 66667777777
Q ss_pred cCCchHHHHHHHHHHhhCCCC
Q 016128 331 HLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.|++++|+..++++.+..|.+
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777766654
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.57 E-value=6e-06 Score=75.46 Aligned_cols=173 Identities=8% Similarity=-0.017 Sum_probs=131.0
Q ss_pred HcCC-chHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCC----------hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 195 KCGQ-PSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGE----------YESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 195 ~~g~-~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
+.|. .++|.+.++.+... |.+...|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3344 35677777776544 5666667776666666666 78888888888877544 6677777777777
Q ss_pred ccC--CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC-cHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc-----
Q 016128 263 HAG--HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG-RLDEARELIRELPE--PTVS-VYHSLLGACWCH----- 331 (394)
Q Consensus 263 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~----- 331 (394)
+.+ +++++.+.++++.+. -+-+...|+.-...+.+.| .++++++.++++.+ |+.. .|+.....+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 778 678888888888864 2345666776666677778 88889999888887 5555 787777666553
Q ss_pred ---------CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCccc
Q 016128 332 ---------LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWED 370 (394)
Q Consensus 332 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (394)
+.++++++.+.++...+|.+..+|..+..++.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888665
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.56 E-value=6.2e-07 Score=64.55 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=48.5
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHH
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNS---ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMV 294 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 294 (394)
.+...+...|++++|+..|++..+.... +. ..+..+..++...|++++|...++.+.+. .+.+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 3444555566666666666665554211 12 34455555555666666666666655543 1111 34455555
Q ss_pred HHHHhcCcHHHHHHHHHhCCC
Q 016128 295 DLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.++.+.|++++|...|+++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666655543
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.54 E-value=1.1e-06 Score=63.26 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHHHHH
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF--KPD----PATWNSMI 120 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~l~ 120 (394)
+..+...+...|++++|...|++... +.+...+..+...+...|++++|...+++...... .++ ..++..+.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 34444444444555555555444432 22334444444455555555555555554444311 111 44455555
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 016128 121 SGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~ 141 (394)
.++...|++++|...|++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555554
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=6.3e-05 Score=66.49 Aligned_cols=192 Identities=8% Similarity=-0.123 Sum_probs=124.3
Q ss_pred HHHHHhcCChhHHHHHHHHhcc-CCC------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC
Q 016128 53 VDMYLKCGCLPCAHNVFQELKG-SRN------------------ILTWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKPD 112 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~-~~~------------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~ 112 (394)
...+.+.|++++|++.|..+.. .++ ..++..+...|...|++++|.+.+...... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778899999998888764 111 023667788888888888888888877653 11122
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCC----
Q 016128 113 P----ATWNSMISGFSQLGMRFEAFKLFEKMQS----TGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADL---- 179 (394)
Q Consensus 113 ~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 179 (394)
. .+.+.+...+...|+++.|..++..... .+..+. ..++..+...+...|++++|..+++++...-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1233334445566788888888877653 222222 45667778888888888888888887654311
Q ss_pred -CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC----CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 180 -NKDESMATALISMYMKCGQPSWARRFFDQFEIK----PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 180 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.....++..++..|...|++++|..++++.... +.+ ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112456777778888888888888888765332 112 12356666677778888888877776644
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.52 E-value=7.5e-08 Score=82.29 Aligned_cols=147 Identities=10% Similarity=-0.043 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 216 PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 444777778888889999999999888775 344331 22333344333222 1 136778888
Q ss_pred HHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH-hhcCCcccH
Q 016128 296 LLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY-AGLGRWEDV 371 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a 371 (394)
+|.+.|++++|+..+++..+ |+.. .|..+..++...|++++|+..|+++.++.|.++.++..+..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988876 6655 8899999999999999999999999999999988888888773 455677888
Q ss_pred HHHHHHhhhcc
Q 016128 372 GRIRQMINDRQ 382 (394)
Q Consensus 372 ~~~~~~m~~~~ 382 (394)
...++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888887654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=1.9e-07 Score=70.53 Aligned_cols=77 Identities=18% Similarity=0.056 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC-chHHHHHHHH
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP-TPFVILSNIY 362 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~ 362 (394)
...+..+..+|.+.|++++|+..+++..+ |+.. .|..+..++...|++++|...|+++.+++|.++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788888888888888888888776 6666 888888899999999999999999999998887 4444444443
Q ss_pred h
Q 016128 363 A 363 (394)
Q Consensus 363 ~ 363 (394)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.52 E-value=6.4e-08 Score=68.63 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHchhcCC--CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHH
Q 016128 264 AGHVDKALQIFTMMDDDFG--LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~ 338 (394)
.|++++|+..|++..+. + -+.+...+..+...|...|++++|...|++..+ |+.. .+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35556666666666542 1 122334555666666666666666666666654 5555 6666777777777777777
Q ss_pred HHHHHHHhhCCCCCch
Q 016128 339 EMAMKLQEMEPENPTP 354 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~ 354 (394)
..++++.+..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777666543
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=3.4e-07 Score=79.11 Aligned_cols=88 Identities=14% Similarity=-0.020 Sum_probs=77.6
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
+...|..+..+|.+.|++++|+..+++..+ |+.. .|..+..++...|++++|+..|+++.++.|.++..+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356788888899999999999999998887 6666 8999999999999999999999999999999999999999998
Q ss_pred hhcCCcccHHH
Q 016128 363 AGLGRWEDVGR 373 (394)
Q Consensus 363 ~~~g~~~~a~~ 373 (394)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=6.2e-08 Score=67.84 Aligned_cols=93 Identities=13% Similarity=-0.074 Sum_probs=78.1
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC------CchHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN------PTPFV 356 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 356 (394)
+...+..+...+...|++++|...|++..+ |+.. .+..+..++...|++++|+..++++.+..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888889999999999888776 6555 88899999999999999999999999999988 67788
Q ss_pred HHHHHHhhcCCcccHHHHHHHh
Q 016128 357 ILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 357 ~l~~~~~~~g~~~~a~~~~~~m 378 (394)
.++.++...|+++.|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8888888889888887766554
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.46 E-value=3.7e-07 Score=68.49 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCC------CCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEP------ENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
++..+...+...|++++|.+.++++.+..+ .....+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555566666666666666666655421 1123456667777777777777777776654
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=4.1e-07 Score=68.66 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.|..+..++...|++++|+..++++++++|.++.+|..++.++...|++++|...+++..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999999999999999999999999999999988754
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.44 E-value=3.9e-07 Score=81.23 Aligned_cols=124 Identities=10% Similarity=0.108 Sum_probs=95.4
Q ss_pred HHHccCCHHHHHHHHHHchhcC--CCCC----CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----------CChh-hHH
Q 016128 260 ACGHAGHVDKALQIFTMMDDDF--GLKP----KQEHFGCMVDLLGRSGRLDEARELIRELPE----------PTVS-VYH 322 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~~~ 322 (394)
.+...|++++|+.++++..+.. -+.+ ...+++.|...|...|++++|..++++..+ |+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557889999988887765431 1122 235678888899999999999888887764 4555 899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh-----hCCCCCch---HHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQE-----MEPENPTP---FVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
.|...|...|++++|+.+++++.+ .+|++|.+ ...+..++...+.+++|+.++.++++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887 45766655 45667778888999999999999987543
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=8.9e-07 Score=66.38 Aligned_cols=96 Identities=13% Similarity=-0.039 Sum_probs=51.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----C---Chh-
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE-----P---TVS- 319 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~---~~~- 319 (394)
++..+...+...|++++|...++...+...-..+ ...+..+...+...|++++|...+++..+ . ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555555544321000011 23444555556666666666665555442 1 111
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
++..+...+...|++++|.+.++++.+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777777788888888877776654
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=1.3e-06 Score=78.41 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=78.9
Q ss_pred HHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVD 268 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (394)
...+.+.|++++|.+.|++.... |.+...|..+..+|.+.|++++|++.+++..+... .+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34456677888888888775443 55677778888888888888888888888777642 25667777777888888888
Q ss_pred HHHHHHHHchhcCCCCCCHhhHHHHHHH--HHhcCcHHHHHHHHH
Q 016128 269 KALQIFTMMDDDFGLKPKQEHFGCMVDL--LGRSGRLDEARELIR 311 (394)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 311 (394)
+|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888776541 2223344444444 677778888887777
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=1e-06 Score=78.61 Aligned_cols=140 Identities=9% Similarity=-0.032 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCC---------------hhHHHHHHHHH
Q 016128 26 YLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRN---------------ILTWNTMIAGM 88 (394)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---------------~~~~~~ll~~~ 88 (394)
+++.|.+.|+...+.. +.....+..+...+.+.|++++|+..|++... +.+ ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554433322 23455666777777777777777777777654 222 35566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
.+.|++++|+..+++..+.... +..+|..+..+|...|++++|+..|++..+.. +-+...+..+..++...++.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665322 55666666666666666666666666666542 123344555555555555555443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=1.4e-06 Score=74.44 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
...+..+...+.+.|++++|...|++.....++.. .+...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677788888899999999999999765323221 1223333344332221 136777888888
Q ss_pred ccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH-HHhcCCchHHH
Q 016128 263 HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA-CWCHLNSDLGE 338 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~-~~~~g~~~~a~ 338 (394)
+.|++++|+..++...+. .+.+...+..+..+|...|++++|...|++..+ |+.. .+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888888763 234667888888889999999999999998876 5555 66666555 23456677888
Q ss_pred HHHHHHHhhCCCCC
Q 016128 339 EMAMKLQEMEPENP 352 (394)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (394)
..|+++....|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 88888888777654
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=1e-06 Score=64.84 Aligned_cols=72 Identities=14% Similarity=-0.083 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCC---------CCChh-hH----HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELP---------EPTVS-VY----HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
.|..+..++.+.|++++|+..+++.. .|+.. .| .....++...|++++|+..|+++.++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56666666667777666666655554 36666 88 899999999999999999999999999988776
Q ss_pred HHHHHH
Q 016128 355 FVILSN 360 (394)
Q Consensus 355 ~~~l~~ 360 (394)
...+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655543
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=1.4e-06 Score=61.51 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCchHHHHHHHHhhcC----CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 016128 197 GQPSWARRFFDQFEIK----PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
|++++|+..|++.... |.+...+..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444332 222333444444444445555555555444443211 33444444444444455555554
Q ss_pred HHHHch
Q 016128 273 IFTMMD 278 (394)
Q Consensus 273 ~~~~~~ 278 (394)
.++...
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.30 E-value=1.9e-06 Score=58.89 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.+..+..++...|++++|+..|+++.+.+|.++.+|..++.+|...|++++|++.+++..+
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555556666666666666666666666666666666666666666666666666655543
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.27 E-value=2.4e-06 Score=57.00 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=63.0
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...+..+...+...|++++|...|++..+ |+.. .+..+..++...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45566677777888888888888877765 5555 78888888888899999999999998888888888888887776
Q ss_pred hcC
Q 016128 364 GLG 366 (394)
Q Consensus 364 ~~g 366 (394)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.24 E-value=1.5e-05 Score=68.86 Aligned_cols=91 Identities=11% Similarity=-0.022 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
+...|..+..+|.+.|++++|+..+++..+.... +..+|..+..+|...|++++|+..|++..+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4456777778888888888888888888776332 57777788888888888888888888877653 235566666677
Q ss_pred HhhccchhhHHHH
Q 016128 157 ACADLSALKLGKE 169 (394)
Q Consensus 157 ~~~~~~~~~~a~~ 169 (394)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=3.4e-05 Score=56.11 Aligned_cols=115 Identities=10% Similarity=-0.151 Sum_probs=91.3
Q ss_pred hhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHh----cCCHHHH
Q 016128 22 ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMML----NGRSEKA 97 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 97 (394)
...+++++|.+.|+...+.| .++.. +...|...+.+++|.+.|++.....+...+..|...|.. .+++++|
T Consensus 6 g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34578899999999988887 33333 777777778888899999888767778888888888887 7888999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCC
Q 016128 98 MELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGM 144 (394)
Q Consensus 98 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~ 144 (394)
...|++..+.| ++..+..|...|.. .+++++|..+|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988888764 67777888888887 7888888888888887763
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=0.00014 Score=66.50 Aligned_cols=170 Identities=8% Similarity=-0.014 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC----------hhHHHHHHHHhcc--CCChhHHHHHHHHHHhcC--
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC----------LPCAHNVFQELKG--SRNILTWNTMIAGMMLNG-- 92 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~-- 92 (394)
-++|.+.++.++..+ +-+..+|+.--.++...|+ ++++++.++.+.. +.+..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 346777888877766 5566677766666666666 7788888877765 456667777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc----------
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG-MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL---------- 161 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---------- 161 (394)
+++++++.++++.+.... +..+|+.-..++.+.| .++++++.++++.+.. +-|...|+....++.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888877554 7777777777777777 7778888887777654 33566666555554432
Q ss_pred ----chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 162 ----SALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 162 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
+.++++.+.+..++.... -+...|..+...+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCcc
Confidence 556777777777766543 25566666666665555533
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.18 E-value=3.5e-06 Score=59.21 Aligned_cols=80 Identities=10% Similarity=-0.085 Sum_probs=57.3
Q ss_pred HHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 269 KALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
.+...++...+ ..+.+...+..+...|...|++++|...|++... |+.. .|..+..++...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666654 2234566777777788888888888888877765 5555 77777788888888888888888887
Q ss_pred hhCCC
Q 016128 346 EMEPE 350 (394)
Q Consensus 346 ~~~~~ 350 (394)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77653
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.17 E-value=8.7e-07 Score=65.07 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=45.8
Q ss_pred cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc----------hHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 300 SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS----------DLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 300 ~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
.+.+++|.+.+++..+ |+.. .|..+..++...+++ ++|+..|+++++++|.+..+|..++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3444555555554443 4444 555555555444433 36666666666666666666666666666553
Q ss_pred -----------CcccHHHHHHHhhhc
Q 016128 367 -----------RWEDVGRIRQMINDR 381 (394)
Q Consensus 367 -----------~~~~a~~~~~~m~~~ 381 (394)
++++|++.|++..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh
Confidence 566666666666543
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.99 E-value=2.4e-05 Score=52.30 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=55.4
Q ss_pred CChh-hHHHHHHHHHhcCC---chHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 316 PTVS-VYHSLLGACWCHLN---SDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
|+.. .+..+..++...++ .++|..+++++++.+|.++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3344 67777777754444 689999999999999999999999999999999999999999998876544
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=1e-05 Score=72.10 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=90.8
Q ss_pred HHhhcCChhhHHHHHHHHHHcC---CCCC----HhhHHHHHHHHHccCCHHHHHHHHHHchhcC----CC-CCC-HhhHH
Q 016128 225 GYGRNGEYESAVEIFDLMQQEK---VKPN----SASFVAVLSACGHAGHVDKALQIFTMMDDDF----GL-KPK-QEHFG 291 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~-~~~~~ 291 (394)
.+...|++++|+.++++..+.. +.|+ ..+++.|...|...|++++|+.++++....+ |- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567889999999888775431 2222 3578888889999999999988888765421 21 222 35678
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC----------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE----------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
.|...|...|++++|..++++..+ |+.. +.+.+..++...+.+++|+..|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999888887764 3334 6677778888889999999999988773
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.97 E-value=5.5e-05 Score=52.92 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=31.0
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
|.++..+..+...+...|++++|+..|++..+... .+...+..+..++...|++++|...|+...
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555555555555444321 133444444455555555555555554443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.00037 Score=50.53 Aligned_cols=110 Identities=8% Similarity=-0.127 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHH
Q 016128 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWAR 203 (394)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 203 (394)
++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555444 12221 4444444444445555555554443 34444445555554 44555555
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHhh----cCChhhHHHHHHHHHHcC
Q 016128 204 RFFDQFEIKPDDPAFWNAMISGYGR----NGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 246 (394)
.+|++.... .++..+..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555554433 344444555555554 455555555555555543
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.4e-05 Score=55.52 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 217 AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334555555555566666666666555542 2244555555555556666666666665555
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=7.5e-05 Score=54.79 Aligned_cols=86 Identities=16% Similarity=0.005 Sum_probs=59.1
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChh----------HHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLP----------CAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
..+.+.+++|.+.++...+.. |.+...|..+..++...++++ +|+..|++... +.+..+|..+..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 346778888999999888877 678888888888888877654 66666666554 33455666666666
Q ss_pred HhcC-----------CHHHHHHHHHHHHhc
Q 016128 89 MLNG-----------RSEKAMELFEGLAHE 107 (394)
Q Consensus 89 ~~~~-----------~~~~a~~~~~~m~~~ 107 (394)
...| ++++|++.|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6553 555566666555554
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.83 E-value=1.8e-05 Score=69.37 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=51.6
Q ss_pred cCcHHHHHHHHHhCCC----------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHh-----hCCCCCc---hHHHHHH
Q 016128 300 SGRLDEARELIRELPE----------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQE-----MEPENPT---PFVILSN 360 (394)
Q Consensus 300 ~g~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~ 360 (394)
.|++++|..++++..+ |+.. +++.+..+|...|++++|+.+++++++ .+|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3556666665554432 3333 677777777777777777777777765 2344443 3666777
Q ss_pred HHhhcCCcccHHHHHHHhhh
Q 016128 361 IYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~ 380 (394)
+|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777776654
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.00023 Score=46.97 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+..+...+...|++++|+..|++..+... .+..++..+..++...|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333444444444444444444443321 1333444444444444444444444444443
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.74 E-value=5e-05 Score=66.72 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh-----hCCCCCc---hHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQE-----MEPENPT---PFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
+++.++.+|...|++++|+.+++++++ .+|.+|. .++.|+.+|...|++++|+.++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444444444444444444444444443 1222222 2444444444455555544444443
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.74 E-value=0.00012 Score=49.75 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
...+..+..+|...|++++|...|++.... |.++..|..+..+|...|++++|+..|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444455555555555555443322 3334444444445555555555555444443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.71 E-value=0.0015 Score=55.18 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444444444455555555555544442 3444444444444455555555555544444
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.70 E-value=4e-05 Score=51.91 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=55.7
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CCh-h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCc
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTV-S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (394)
....+.+.|++++|...|++..+ |+. . .+..+..++...|++++|+..|+++.+.+|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 34566777888888888877765 433 4 67777888888888888888888888888888776632 344
Q ss_pred ccHHHHHHHhh
Q 016128 369 EDVGRIRQMIN 379 (394)
Q Consensus 369 ~~a~~~~~~m~ 379 (394)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55555555444
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.67 E-value=0.00013 Score=64.08 Aligned_cols=100 Identities=11% Similarity=-0.062 Sum_probs=77.3
Q ss_pred HHHHHccCCHHHHHHHHHHchhcC--CCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC----------CChh-h
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDF--GLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE----------PTVS-V 320 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~ 320 (394)
+..+...|++++|+.++++..+.. -+.|+ ..+++.+...|...|++++|+.++++... |+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999998886532 12232 35678888999999999999998887764 5555 8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh-----hCCCCCchHHH
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQE-----MEPENPTPFVI 357 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 357 (394)
++.|...|...|++++|+.+++++.+ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 99999999999999999999999987 45777655443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.66 E-value=9.4e-05 Score=64.87 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=71.4
Q ss_pred ccCCHHHHHHHHHHchhcC--CCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC----------CChh-hHHHHH
Q 016128 263 HAGHVDKALQIFTMMDDDF--GLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE----------PTVS-VYHSLL 325 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~~~~l~ 325 (394)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|..++++..+ |+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888887765421 12222 35678889999999999999998888764 5555 899999
Q ss_pred HHHHhcCCchHHHHHHHHHHh-----hCCCCCchH
Q 016128 326 GACWCHLNSDLGEEMAMKLQE-----MEPENPTPF 355 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 355 (394)
..|...|++++|+.+++++.+ .+|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 456665443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.55 E-value=0.0083 Score=57.62 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=59.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh
Q 016128 87 GMMLNGRSEKAME-LFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 87 ~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
.....+++++|.+ ++.. .|+......++..+.+.|.++.|+++.+. |. .- .......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHH
Confidence 3345667777665 4411 11122235566666677777776654421 10 00 12233455666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHH
Confidence 665554321 2455666666666666666666666665544 34444444444444443333
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.54 E-value=0.00077 Score=56.89 Aligned_cols=138 Identities=10% Similarity=-0.032 Sum_probs=82.0
Q ss_pred CCChhhHHHHHHHHhh--c---CChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHc---cC--C---HHHHHHHHHHch
Q 016128 213 PDDPAFWNAMISGYGR--N---GEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGH---AG--H---VDKALQIFTMMD 278 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~--~---~~~a~~~~~~~~ 278 (394)
|.++..|...+++... . .+..+|+.+|++..+. .|+ ...+..+..++.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5667777777765432 2 2346788888888876 343 3444433333321 00 1 111111111111
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
.....+.++.++..+...+...|++++|...++++.. |+...|..+...+.-.|++++|.+.++++..++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1112355667777777667767888888888887776 5444666777777788888888888888888887553
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.53 E-value=0.0068 Score=42.37 Aligned_cols=141 Identities=11% Similarity=0.067 Sum_probs=103.3
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (394)
+.-.|..++..++..+..... +..-|+-+|.-....-+-+-..+.++.+-+.+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 445688888888888887652 55667777776667777777777777776543332 2344444
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 306 ARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 306 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
....+-.+. .+....+..+..+...|+.+.-.+++..+....+++|..+..++.+|.+.|+..+|.++++++.+.|++
T Consensus 80 Vi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444443 233355666677888999999999999987777889999999999999999999999999999999875
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.48 E-value=8.1e-05 Score=50.35 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCc-hHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPENPT-PFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
....+...|++++|+..++++.+..|.++. .+..++.++...|++++|+..+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999 99999999999999999999999998764
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.31 E-value=0.0096 Score=57.18 Aligned_cols=152 Identities=10% Similarity=-0.024 Sum_probs=86.5
Q ss_pred hhhHhHHHHHH-HHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 016128 22 ASLLYLQFGRQ-VHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 22 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 100 (394)
...++++.|.+ ++..+ ++......++..+.+.|..++|.++.+. +. .-.......|++++|.++
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~----~~-----~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD----QD-----QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC----HH-----HHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC----cc-----hheehhhhcCCHHHHHHH
Confidence 34567777665 44221 1122236777777788888888765532 11 113345667888888887
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC
Q 016128 101 FEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180 (394)
Q Consensus 101 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 180 (394)
.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++.+.....|.
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 5432 3677888888888888888888888887743 33344444445555544444443333321
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
++....+|.+.|++++|.+++.++
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 122233344445555555444433
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.19 E-value=0.0019 Score=42.89 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=53.4
Q ss_pred CCCHhhHHHHHHHHHhcCc---HHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 284 KPKQEHFGCMVDLLGRSGR---LDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
+.++..+..+..++...++ .++|..++++... |+.. ....+...+...|++++|+..|+++.+.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566777777777765544 6888888888876 7776 78888888888999999999999998888873
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.16 E-value=0.0019 Score=44.06 Aligned_cols=72 Identities=15% Similarity=0.026 Sum_probs=49.3
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
...+..+...+.+.|+++.|...|+...+ ++.. ++..+..++.+.|+++.|...++++.+..|.++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33444555556666666666655555432 1223 7888888999999999999999999999998876655
Q ss_pred HH
Q 016128 357 IL 358 (394)
Q Consensus 357 ~l 358 (394)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.12 E-value=0.0011 Score=53.60 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCC--CC--hh-hHHHHHHHHHh-----cCCchHHHHHHHHHHhhCCCC-CchHHHHHHHHhh-cCCccc
Q 016128 303 LDEARELIRELPE--PT--VS-VYHSLLGACWC-----HLNSDLGEEMAMKLQEMEPEN-PTPFVILSNIYAG-LGRWED 370 (394)
Q Consensus 303 ~~~a~~~~~~~~~--~~--~~-~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~g~~~~ 370 (394)
...|...+++..+ |+ .. .|..+...|.. -|+.++|.+.|++++++.|.. ..++...+..++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4455566666655 44 22 67777777776 377788888888888877754 7777777777776 477777
Q ss_pred HHHHHHHhhhccccccCC
Q 016128 371 VGRIRQMINDRQLTKLPG 388 (394)
Q Consensus 371 a~~~~~~m~~~~~~~~~~ 388 (394)
|.+.+++........+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 788877777765553344
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0036 Score=45.42 Aligned_cols=88 Identities=16% Similarity=0.022 Sum_probs=56.3
Q ss_pred HHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC---cHHHHHHHHHhCCCCC----hh-hHHHHHHHHHhcCCchHHHH
Q 016128 268 DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG---RLDEARELIRELPEPT----VS-VYHSLLGACWCHLNSDLGEE 339 (394)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~----~~-~~~~l~~~~~~~g~~~~a~~ 339 (394)
..+.+.|.+.... + +++..+...+..++++++ +.++++.+|++..+.+ .. .+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444432 2 256666666666666666 5556666666655422 12 55566677888899999999
Q ss_pred HHHHHHhhCCCCCchHHH
Q 016128 340 MAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~ 357 (394)
.++.+.+.+|.+..+...
T Consensus 93 y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 999999999987655443
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.89 E-value=1.3e-06 Score=75.04 Aligned_cols=304 Identities=9% Similarity=0.032 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 125 (394)
+.+|..|..+....+++.+|++.|=+. .|+..|..++....+.|.+++-...+...++..-.| ..=+.|+-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 345555666666666666555544332 344445556666666666666666655444442222 222355666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--------------------------HhhccchhhHHHHHHHHHHHcCC
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS--------------------------ACADLSALKLGKETHGHVIRADL 179 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~--------------------------~~~~~~~~~~a~~~~~~~~~~~~ 179 (394)
.++..+-.+++. .||..-...+.. .+.+.|++..|.+.-+ +
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr---K--- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR---K--- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT---T---
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---h---
Confidence 655544322211 122222333333 3444455444433221 1
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHH
Q 016128 180 NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (394)
..++.||..+-.+|...+.+.-|.-.--.+... +.-...++..|-..|.+++.+.+++.-... -+...-.|+-|.-
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 235667777778888888877766555444432 222345667788889999999988887643 2456778888888
Q ss_pred HHHccCCHHHHHHHHHHchhcCCCCC------CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-CChh-hHHHHHHHHHhc
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGLKP------KQEHFGCMVDLLGRSGRLDEARELIRELPE-PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-~~~~l~~~~~~~ 331 (394)
.|++ -+.++..+.++....+-+++- ....|..++-.|.+-.+++.|.. .|.+ |... --..+-....+.
T Consensus 272 LYsK-Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l---tMi~h~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 272 LYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKV 347 (624)
T ss_dssp HHHS-SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH---TTTSCHHHHCCGGGGTTTGGGC
T ss_pred HHHh-cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH---HHHhCChhhccHHHHHHHHHHc
Confidence 7876 466777776666554323322 22345556666666666665432 2222 1111 222222333444
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
.+.+---+...-.+ ...|...+-|+.++...=|..++.++|++.
T Consensus 348 aN~EiyYKAi~FYL---~e~P~lL~DLL~vL~prlDh~RvV~~~~k~ 391 (624)
T 3lvg_A 348 ANVELYYRAIQFYL---EFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 391 (624)
T ss_dssp SCSHHHHHHHHHHT---TSCCTTSHHHHHHHCTTCCSTTTHHHHHTT
T ss_pred chHHHHHHHHHHHH---HhChHHHHHHHHhccccCChHHHHHHHHhc
Confidence 44443222222222 234456677777776666666666666543
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.81 E-value=0.15 Score=41.40 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHhhhcCCchHHHHHHHHH------HHhcCChhHHHHHHHHhcc-CCChhHHHHHHH-HHHhc--CC--
Q 016128 26 YLQFGRQVHGLTLKIEKQSDTMIGTALVDM------YLKCGCLPCAHNVFQELKG-SRNILTWNTMIA-GMMLN--GR-- 93 (394)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~-~~~~~--~~-- 93 (394)
+...|.+++....+.+. ..|-.. -.+.++..+-.+.+.+... .+....|..++. .++.. |+
T Consensus 102 ~~~RA~~Ly~ra~~y~~-------raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~ 174 (301)
T 3u64_A 102 AYSRARKLYLRGARYAL-------SSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSA 174 (301)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChH
Confidence 45566777776665441 111110 1223444444444544441 223345666554 33432 33
Q ss_pred ----HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 94 ----SEKAMELFEGLAHEGFKPD---PATWNSMISGFSQL-----GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 94 ----~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++..
T Consensus 175 Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred HHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Confidence 46777778888776 455 56888888889884 99999999999998864222367777788888874
Q ss_pred -chhhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 016128 162 -SALKLGKETHGHVIRADLN--KDESMATAL 189 (394)
Q Consensus 162 -~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 189 (394)
|+.+++.+.+++....+.. |+....+.+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8999999999999988776 665554433
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.80 E-value=0.00062 Score=58.99 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMM 89 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~ 89 (394)
|+..|..++.++.+.|.++.-.+.+....+.. .++.+=+.|+-+|++.+++.+-.++ ...||..-...+.+-|.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEef----l~~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----INGPNNAHIQQVGDRCY 155 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTST----TSCCSSSCTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHH----HcCCCcccHHHHHHHHH
Confidence 55667777777777777777777776655543 3334446777777777776543322 22455555555666666
Q ss_pred hcCCHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 016128 90 LNGRSEKAMELFEGLAHEG--------------------FKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g--------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 149 (394)
..|.++.|.-+|..+.... -..++.||-.+-.+|...+++.-|.-.--.++-. |+
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad-- 230 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD-- 230 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--
Confidence 6666666665555432210 0115667777777777777766554443333311 11
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---C------CChhhHH
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK---P------DDPAFWN 220 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~------~~~~~~~ 220 (394)
....++.-|-..|.+++...+++...... .....+|+-|.-.|++- ++++..+.++..-.+ | .....|.
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 12234555667777777777777766432 45778888888877765 455555554433222 1 1234477
Q ss_pred HHHHHHhhcCChhhHHH
Q 016128 221 AMISGYGRNGEYESAVE 237 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~ 237 (394)
-++-.|.+-.++|.|..
T Consensus 309 ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcchhHHHHHH
Confidence 77777777777776643
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.1 Score=38.81 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKM 139 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 139 (394)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 33445555555544433 14445555555555555555555555443
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.67 E-value=0.09 Score=36.88 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=29.8
Q ss_pred hcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016128 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAH 106 (394)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 106 (394)
-.|.+++..++..+...+.+..-||-+|--....-+-+-..++++..-+
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk 67 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS 67 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh
Confidence 3577777777777666455555566666666655666655555555443
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.53 E-value=0.023 Score=41.17 Aligned_cols=82 Identities=11% Similarity=-0.057 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC---ChhHHHHHHHHhcc-C-C--ChhHHHHHHHHHHhcCCHHHH
Q 016128 25 LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG---CLPCAHNVFQELKG-S-R--NILTWNTMIAGMMLNGRSEKA 97 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~ll~~~~~~~~~~~a 97 (394)
..+..+.+-|....+.+ +++..+...+..++++.+ ++++++.+|+.+.. . | +...+-.+.-++.+.|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 44555555566555555 456666666666666666 55566666666553 2 2 223334445555666666666
Q ss_pred HHHHHHHHhc
Q 016128 98 MELFEGLAHE 107 (394)
Q Consensus 98 ~~~~~~m~~~ 107 (394)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666666665
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.33 E-value=0.63 Score=42.75 Aligned_cols=313 Identities=9% Similarity=-0.041 Sum_probs=166.0
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCch-HHHHHHHHHHHhcCChhHHHHHHHHhccCCCh-hHHHHHHHHHHh
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDT-MIGTALVDMYLKCGCLPCAHNVFQELKGSRNI-LTWNTMIAGMML 90 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ll~~~~~ 90 (394)
.|.....++ +.|++..+.++...+... +..+ ..|..+...+ .....++....+++.+..|-. ..-+..+..+.+
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHh
Confidence 344444443 457777777766554321 2211 1232222211 223567777777776543332 223455677778
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH--HH
Q 016128 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL--GK 168 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~ 168 (394)
.+++...+.++.. .+.+...--....+....|+..+|......+-..| ......+..++..+.+.|.+.. ..
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 8888877765542 23345444556677778888888887777766554 2234456667777665554332 22
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-----------HHHH-cCCchHHHHHHHHhhcCCCChhh---HHHHHHHHhhcCChh
Q 016128 169 ETHGHVIRADLNKDESMATALIS-----------MYMK-CGQPSWARRFFDQFEIKPDDPAF---WNAMISGYGRNGEYE 233 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~-~g~~~~a~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 233 (394)
.-++.+...| +...-..++. .+.. ..++..+....... +++... +...+.-+.+ .+.+
T Consensus 159 ~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~rlar-~d~~ 231 (618)
T 1qsa_A 159 ERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTT---GATDFTRQMAAVAFASVAR-QDAE 231 (618)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHS---CCCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhcc---CCChhhHHHHHHHHHHHHh-cCHH
Confidence 2222223322 1111111111 1110 01222222222221 112211 1122223333 4789
Q ss_pred hHHHHHHHHHHcCCCCCHhhHH----HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 234 SAVEIFDLMQQEKVKPNSASFV----AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
.|...+....+... .+..... .++......+...++...+...... ..+.....-.+....+.|+++.|...
T Consensus 232 ~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 232 NARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999998876542 2333222 2333333445345566666665432 34444455555556678999999999
Q ss_pred HHhCCCCC--hh-hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 310 IRELPEPT--VS-VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 310 ~~~~~~~~--~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
|+.|.... .. ..--+.+++...|+.++|..+|+.+.+
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998732 22 344566778889999999999999865
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.29 E-value=0.03 Score=39.00 Aligned_cols=89 Identities=16% Similarity=0.015 Sum_probs=57.0
Q ss_pred HHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH---HHHHHHhCCCCC---hh--hHHHHHHHHHhcCCchHHH
Q 016128 267 VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE---ARELIRELPEPT---VS--VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~---~~--~~~~l~~~~~~~g~~~~a~ 338 (394)
...+.+.+...... +. ++..+-..+..+++++.+... ++.+++.+...+ .. ..-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444444332 22 566666666666776665554 666776666522 11 4455667888899999999
Q ss_pred HHHHHHHhhCCCCCchHHH
Q 016128 339 EMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~ 357 (394)
+.++.+++.+|.|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999988665443
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.22 Score=37.08 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=21.8
Q ss_pred HcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345555555554443 23444555555555555555555555443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.26 E-value=0.009 Score=42.75 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=74.2
Q ss_pred CCHhhHHHHHHHHHccCCH------HHHHHHHHHchhcCCCCCCHh-hHHHHHH------HHHhcCcHHHHHHHHHhCCC
Q 016128 249 PNSASFVAVLSACGHAGHV------DKALQIFTMMDDDFGLKPKQE-HFGCMVD------LLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~ 315 (394)
-|..+|-..+...-+.|+. ++..++|++... .++|+.. .+...+. .+...++.++|.++|+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3677888888887777888 888888888876 5566532 1112211 22345788888888887754
Q ss_pred --CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 316 --PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 316 --~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
..-. .|....+.-.++|+...|.+++.++..+.|.....+...+.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 1112 66677777778888888888888888888766555554443
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.14 E-value=0.049 Score=36.81 Aligned_cols=65 Identities=9% Similarity=-0.108 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhc------CCchHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEK------QSDTMIGTALVDMYLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 73 (394)
.+...+..+...+.+.|++..|...|+...+... .+...++..+..++.+.|+++.|...+++..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445555666666677777777777776665321 2234555666666666666666666666554
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.32 Score=42.80 Aligned_cols=186 Identities=8% Similarity=0.006 Sum_probs=94.2
Q ss_pred hHhHHHHHHHHHHHHhhh-----cCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCC--hhHHHHHH----HHHHhcC
Q 016128 24 LLYLQFGRQVHGLTLKIE-----KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRN--ILTWNTMI----AGMMLNG 92 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ll----~~~~~~~ 92 (394)
.|+++.|.+.+-.+.+.. ..........++..|...|+++...+.+..+..... -.....++ .......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 378888888776665432 344566777888888888888888777666553211 11122222 2222222
Q ss_pred CHHH--HHHHHHHHHhc--C-CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHhh
Q 016128 93 RSEK--AMELFEGLAHE--G-FKP---DPATWNSMISGFSQLGMRFEAFKLFEKMQST--GMVPS---LKCVTSVLSACA 159 (394)
Q Consensus 93 ~~~~--a~~~~~~m~~~--g-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~l~~~~~ 159 (394)
..+. -..+.+..... | +.. .......|...|...|++.+|.+++.++... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 11122111110 1 111 1122345666677777777777777776532 22111 124445556666
Q ss_pred ccchhhHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 160 DLSALKLGKETHGHVIR----ADLNKD--ESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 160 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
..+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666666666665532 111111 133344455555556666665555544
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.023 Score=53.08 Aligned_cols=55 Identities=7% Similarity=-0.049 Sum_probs=50.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 325 LGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
...|...|+++-|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3556778999999999999999999999999999999999999999999999985
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.62 E-value=0.12 Score=37.03 Aligned_cols=53 Identities=17% Similarity=0.044 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMV 145 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 145 (394)
++.++|.++|+.+...+-+- ...|......-.++|+..+|.+++......+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554431111 445555555555666666666666666655544
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.01 E-value=0.7 Score=46.25 Aligned_cols=84 Identities=11% Similarity=0.119 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCCh----hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK--PDDP----AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (394)
..-|..++..+.+.+.++.+.++-...... +.+. ..|..+...+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 344566666777777777766665543221 1121 1367777777777777777777776655432 3445555
Q ss_pred HHHHHHccCCHH
Q 016128 257 VLSACGHAGHVD 268 (394)
Q Consensus 257 l~~~~~~~~~~~ 268 (394)
|+..++..|..+
T Consensus 977 LV~~lce~~~~~ 988 (1139)
T 4fhn_B 977 FVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCHH
T ss_pred HHHHHHhCCChh
Confidence 666555555443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.19 Score=47.02 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-hhHHHHHHHHHHHc------CCC-CCH----
Q 016128 117 NSMISGFSQLGM-RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA-LKLGKETHGHVIRA------DLN-KDE---- 183 (394)
Q Consensus 117 ~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~-~~~---- 183 (394)
..++..+...++ .+.|..+|+++.......+......++..+...++ --+|.+++.+..+. ... .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555555 47788888888765322122222233333333332 22334444333321 111 111
Q ss_pred ------HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 184 ------SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 184 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
.....-...+...|+++-|+.+.++.... |.+..+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222244566678888888888886554 667788889999999999999888888776
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.81 E-value=0.3 Score=32.13 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=51.4
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (394)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+ +.....+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 55677788888888889999999999999999999999999999999874 33345567766643
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.62 E-value=0.057 Score=46.69 Aligned_cols=67 Identities=12% Similarity=-0.068 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh-----ccccccCC
Q 016128 322 HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND-----RQLTKLPG 388 (394)
Q Consensus 322 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 388 (394)
..++.++...|++++++..++.+...+|-+...+..++.++.+.|+..+|++.|+.+.+ .|+.|++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556666777777777777777777777777777777777777777777777776543 36666654
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.51 E-value=3.6 Score=39.63 Aligned_cols=256 Identities=8% Similarity=0.099 Sum_probs=126.6
Q ss_pred HHhcCChhHHHHHHHHhcc---CCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHH
Q 016128 56 YLKCGCLPCAHNVFQELKG---SRNIL--TWNTMIAGMMLNGRSEKAMELFEGLAHEGF-------KPDPATWNSMISGF 123 (394)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~l~~~~ 123 (394)
....|+.++++.+++.... ..+.. .=..+.-+.+..|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3445777777777777653 11222 122333445556665667776666554311 01111222333333
Q ss_pred HccCC-HHHHHHHHHHHHhCCCCCCHHHHH--HHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCC
Q 016128 124 SQLGM-RFEAFKLFEKMQSTGMVPSLKCVT--SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY--MKCGQ 198 (394)
Q Consensus 124 ~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~ 198 (394)
+-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+...+..++ ...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33333 2455565655554321 1111112 22333455666666666666665432 333444344433 35678
Q ss_pred chHHHHHHHHhhcCCCChhh-HH---HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 016128 199 PSWARRFFDQFEIKPDDPAF-WN---AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274 (394)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (394)
.+.+..+.+.+... .++.. |. ++.-+|+-.|+.....++++.+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888777777654 23333 33 34456777788777777887777642 223333333333444456656666666
Q ss_pred HHchhcCCCCCCHhhHHHHHHHHHhcCcH-HHHHHHHHhCCC-CChh
Q 016128 275 TMMDDDFGLKPKQEHFGCMVDLLGRSGRL-DEARELIRELPE-PTVS 319 (394)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~-~~~~ 319 (394)
+.+.+. ..|....-..+.-+....|.. .++...+..+.. ++..
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 655542 233333223333333334433 566667766664 4444
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.48 E-value=2.6 Score=42.17 Aligned_cols=128 Identities=9% Similarity=0.138 Sum_probs=62.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSL----KCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALI 190 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 190 (394)
-|..++..+.+.+.++.+.++-....+.....+. ..|..+.+.+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3455555565666666655555444332111111 1345555666666666666655555543322 233444444
Q ss_pred HHHHHcCC------------chHHHHHHHHhhc----CCCChhhHHHHHHHHhhcCChhhHHH-HHHHHHH
Q 016128 191 SMYMKCGQ------------PSWARRFFDQFEI----KPDDPAFWNAMISGYGRNGEYESAVE-IFDLMQQ 244 (394)
Q Consensus 191 ~~~~~~g~------------~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 244 (394)
...+..|+ .++..+++..... ....+..|..|-.-+...|++.+|-. +|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 44444433 3344444432211 01234556777777777788766544 4555443
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=2.5 Score=37.12 Aligned_cols=188 Identities=9% Similarity=0.029 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc
Q 016128 126 LGMRFEAFKLFEKMQST-----GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY----MKC 196 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 196 (394)
.|++++|++.+..+.+. ...-+......++..|...++++...+.+..+.+..... ......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37889998888766542 345567788889999999999999988887765433222 23333344332 223
Q ss_pred CCchH--HHHHHHHhhcCCCC---h-----hhHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCC---HhhHHHHHHHH
Q 016128 197 GQPSW--ARRFFDQFEIKPDD---P-----AFWNAMISGYGRNGEYESAVEIFDLMQQE--KVKPN---SASFVAVLSAC 261 (394)
Q Consensus 197 g~~~~--a~~~~~~~~~~~~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 261 (394)
...+. -..+.+.+.....+ . .....|...+...|++.+|.+++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33322 22222222221111 1 12356788889999999999999998643 22211 23566777889
Q ss_pred HccCCHHHHHHHHHHchhcC-CCCCCH----hhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 262 GHAGHVDKALQIFTMMDDDF-GLKPKQ----EHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
...+++.+|..++..+.... ...+++ ..+...+..+...+++.+|...|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999998874311 122222 345666777888899999888776654
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.32 E-value=4 Score=39.36 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=12.5
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHH
Q 016128 15 ISVISACASLLYLQFGRQVHGLTL 38 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~ 38 (394)
..++++..+.++.+.+.++|..+.
T Consensus 234 ~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 234 LTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444555555566655544
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.84 E-value=0.19 Score=36.85 Aligned_cols=119 Identities=16% Similarity=0.031 Sum_probs=61.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH-------hhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CChh-
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ-------EHFGCMVDLLGRSGRLDEARELIRELPE-----PTVS- 319 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~- 319 (394)
++..-++.+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++... +...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444566667777777777766654321223331 2445566677777777777777766432 1110
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
+...+. . ...... -. ..+.+.+.-..++.+|.+.|++++|+.+++.+.....
T Consensus 102 ~~~~~~-~---~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 102 VRPSTG-N---SASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred cccccc-c---cCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 100000 0 000000 00 0012224556678888888999999888887655433
No 248
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.75 E-value=1.2 Score=31.08 Aligned_cols=89 Identities=11% Similarity=-0.045 Sum_probs=50.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhH---HHHHHHHhccC--C--ChhHHHHHHHHHHh
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC---AHNVFQELKGS--R--NILTWNTMIAGMML 90 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~ll~~~~~ 90 (394)
+..-.....+..+.+-|......| .++..+--.+..++.+.....+ ++.+++.+... | .....-.|.-++.+
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 333344455556666666655555 4666666666666766665544 66667666532 1 11222334455666
Q ss_pred cCCHHHHHHHHHHHHhc
Q 016128 91 NGRSEKAMELFEGLAHE 107 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~ 107 (394)
.|++++|.+.++.+.+.
T Consensus 87 lg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQT 103 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66666666666666665
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.72 E-value=0.5 Score=34.60 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHhhcC---CCCh-------hhHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHh-hHH
Q 016128 188 ALISMYMKCGQPSWARRFFDQFEIK---PDDP-------AFWNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSA-SFV 255 (394)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-~~~ 255 (394)
.-+..+...|.++.|+-+.+.+... +++. .++..+.+++...+++..|...|++..+.. .-+... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3455666677777777666653222 2221 134556667777777777777777764421 111111 111
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.+. ....... ......+...-..+..+|.+.|++++|+.+++.++.
T Consensus 105 ~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 110 0000000 001223344555577788888888888888888765
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.66 E-value=4.3 Score=37.35 Aligned_cols=309 Identities=11% Similarity=0.021 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 127 (394)
.-+..+..+.+.+++...+..+.. . +.+...-.....+....|+..+|......+-..|-. .+..+..++..+.+.|
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCC
Confidence 345566777888899888886665 3 456665666778888889988888877777666533 5567778888888776
Q ss_pred CHHH--HHHHHHHHHhCC-----------CCCCHHH-HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHH---HHHHH
Q 016128 128 MRFE--AFKLFEKMQSTG-----------MVPSLKC-VTSVLSACADLSALKLGKETHGHVIRADLNKDESM---ATALI 190 (394)
Q Consensus 128 ~~~~--a~~~~~~m~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~ 190 (394)
.... ...=++.+...| +.++... ...++....+ ...+...... ..++... +...+
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TGATDFTRQMAAVAF 222 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc-----cCCChhhHHHHHHHH
Confidence 6543 222223333332 1111111 1111111111 1111111111 1223221 22223
Q ss_pred HHHHHcCCchHHHHHHHHhhcC-CCChhh----HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 016128 191 SMYMKCGQPSWARRFFDQFEIK-PDDPAF----WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG 265 (394)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (394)
.-+.+ .+.+.|...+...... ..+... +..+...+...+...++...+...... .++.....-.+....+.|
T Consensus 223 ~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 223 ASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHT
T ss_pred HHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCC
Confidence 33333 3788999999887543 223332 333333444555455667777765543 234444444455555779
Q ss_pred CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
+++.|...|..+... . .....-.--+.+++...|+.++|..+|+.+..+. .-|..+. ..+.|..... . ..
T Consensus 300 d~~~a~~~~~~l~~~-~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~-~fYg~lA--a~~Lg~~~~~-~----~~ 369 (618)
T 1qsa_A 300 DRRGLNTWLARLPME-A-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQR-GFYPMVA--AQRIGEEYEL-K----ID 369 (618)
T ss_dssp CHHHHHHHHHHSCTT-G-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHHHHH--HHHTTCCCCC-C----CC
T ss_pred CHHHHHHHHHHcccc-c-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHH--HHHcCCCCCC-C----CC
Confidence 999999999998653 1 1233334556778889999999999999998753 2343332 2233321100 0 00
Q ss_pred hhCCCCCc-----hHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 346 EMEPENPT-----PFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 346 ~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...+.... .-..-+..+...|....|...+..+..
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 00111111 122334556778888888887776654
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.52 E-value=2 Score=37.05 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 016128 84 MIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS-----TGMVPSLKCV 151 (394)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 151 (394)
++..+...|++++|...+..+..... -+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34455566777777766666655422 2566677777777777777777777666532 3666665543
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.35 E-value=0.84 Score=31.90 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=52.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (394)
|.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++.+ +.+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 45567777888888889999999999999999999999999999999874 44445567776643
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.54 E-value=1.7 Score=30.94 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=48.9
Q ss_pred CCCHhhHHHHHHHHHhcCcHH---HHHHHHHhCCC--CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 284 KPKQEHFGCMVDLLGRSGRLD---EARELIRELPE--PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
.|+..+--.+..++.++.+.+ +++.+++++.. |... ..-.|.-++.+.|++++|.++.+.+++.+|.|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456666556666666665443 45555555543 4222 5556667888999999999999999999998865543
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.08 E-value=4.4 Score=33.43 Aligned_cols=166 Identities=13% Similarity=0.015 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKL----FEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~ 156 (394)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ .+-..+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44455566677777777777654322 24445665554443 344445567777777777776
Q ss_pred Hhhccch-----hhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhc
Q 016128 157 ACADLSA-----LKLGKETHGHVIRAD--LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229 (394)
Q Consensus 157 ~~~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (394)
.+..... .+-..+.+..-.+.| ..-++.....+...|.+.|++.+|+..|-.-.. .++..+..++.-+...
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~--~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH--DSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--ccHHHHHHHHHHHHHh
Confidence 6654321 122222333333332 224778888888999999999888887752211 1344444444333332
Q ss_pred ---CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 230 ---GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 230 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
|...++ +...-..++. |.-.++...|..+++...
T Consensus 179 ~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 332221 1111222222 334577888877777654
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.96 E-value=0.9 Score=29.94 Aligned_cols=61 Identities=10% Similarity=-0.011 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHH
Q 016128 26 YLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIA 86 (394)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~ 86 (394)
|.=+.++-++.+...++.|++.+..+.+++|-+-+++..|.++|+-++. .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3345666677777777888888888888888888888888888887765 223334554443
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.49 E-value=5.4 Score=33.21 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH----HHHHHHcCCCCCHhhHHHHHHHH
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI----FDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
|.++..=|.+.+++++|.+++..-. ..+.+.|+...+.++ ++-+.+.++++|......++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3445555666666666666553311 122233333333222 23334445555555555555554
Q ss_pred HccCC--H------HHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 016128 262 GHAGH--V------DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310 (394)
Q Consensus 262 ~~~~~--~------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 310 (394)
..... . .+|+++=... .. .-.-|+.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~-g~-~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKF-GD-YPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHH-SS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhc-CC-CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 43322 1 1112211110 00 12335666667777777777777776665
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.19 E-value=0.7 Score=32.37 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=37.6
Q ss_pred CCHhhHHHHHHHHHhcCcH---HHHHHHHHhCCC--CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 285 PKQEHFGCMVDLLGRSGRL---DEARELIRELPE--PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
|++.+--.+..++.++.+. .+++.+++++.. |... .+-.+.-++.+.|++++|.+..+.+.+.+|.|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444444444444433 234444444432 2211 44455566677777777777777777777766544
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.51 E-value=3.1 Score=33.26 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=65.0
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh----hHHHHHHHHHhc
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE----HFGCMVDLLGRS 300 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 300 (394)
.+.+.|+.+++++....-++.. +-|...-..+++.+|-.|++++|.+-++...+. .|+.. .|..+|++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4556677777777777666653 235666666777777777777777777666532 33322 33333332
Q ss_pred CcHHHH-HHHHHhCCCC-----ChhhHHHHHHHH--HhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 301 GRLDEA-RELIRELPEP-----TVSVYHSLLGAC--WCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 301 g~~~~a-~~~~~~~~~~-----~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
+.. .++|..-..| ...-...++.+. ...|+.++|.++-..+.+.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 1233322221 111233334443 3458888888888877777665543
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.42 E-value=7.9 Score=33.24 Aligned_cols=286 Identities=9% Similarity=-0.003 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc-------CCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHH---
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG-------SRNILTWNTMIAGMMLN-GRSEKAMELFEGLAHEGFKPDPATW--- 116 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~--- 116 (394)
....|...|.+.|+.++..+++..... .......+.+++.+... +..+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 446677788888888888888877653 11334456677776654 3344444444444332100 11223
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHhhccchhhHHHHHHHHHHHc--CCCCCHHHH
Q 016128 117 ---NSMISGFSQLGMRFEAFKLFEKMQST--GMVPS---LKCVTSVLSACADLSALKLGKETHGHVIRA--DLNKDESMA 186 (394)
Q Consensus 117 ---~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 186 (394)
..++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++.++...+...... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25778888889999998888887753 11111 234555667778888888888888776543 232444433
Q ss_pred HHH----HHHHH-HcCCchHHHHHHHHhhcC---CCCh-----hhHHHHHHHHhhcCChhhHHHHHH-HHHHcCCCCCHh
Q 016128 187 TAL----ISMYM-KCGQPSWARRFFDQFEIK---PDDP-----AFWNAMISGYGRNGEYESAVEIFD-LMQQEKVKPNSA 252 (394)
Q Consensus 187 ~~l----~~~~~-~~g~~~~a~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 252 (394)
..+ ...+. ..+++..|...|-+.-.. ..++ ..|..+.. .. .++..+.-.++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhccccccccCCccHH
Confidence 222 23345 678888887776554211 1111 11322222 22 233333333322 211111345556
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh-hHHHHHHHHHhc
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS-VYHSLLGACWCH 331 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~ 331 (394)
.+..++.++ ..+++.+...++..... .+..|+.....+ ..+.+ .-. ...+.++.+|-.. ++..+...+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~-~~L~~-~Ir---~~~L~~i~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHL-GTLYD-TML---EQNLCRIIEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHH-HHHHH-HHH---HHHHHHHHTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHH-HHHHH-HHH---HHHHHHHhHhhceeeHHHHHHHHCc-
Confidence 666777765 45788888888877654 455565432211 11111 001 1122222334333 77777766643
Q ss_pred CCchHHHHHHHHHHh
Q 016128 332 LNSDLGEEMAMKLQE 346 (394)
Q Consensus 332 g~~~~a~~~~~~~~~ 346 (394)
..++++..+.++..
T Consensus 329 -s~~evE~~L~~lI~ 342 (394)
T 3txn_A 329 -PMPQVEKKLSQMIL 342 (394)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 56788888888776
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.28 E-value=6.9 Score=32.31 Aligned_cols=113 Identities=10% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHH----HHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVE----IFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.+ +.+-..+.+.+++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3444455556666666666543321 12233344333333 233444455666666655555554
Q ss_pred HccCC-----HHHHHHHHHHchhcCC-CCCCHhhHHHHHHHHHhcCcHHHHHHHHH
Q 016128 262 GHAGH-----VDKALQIFTMMDDDFG-LKPKQEHFGCMVDLLGRSGRLDEARELIR 311 (394)
Q Consensus 262 ~~~~~-----~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (394)
..... .+-..+...+..+..+ -.-++..+..+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 33211 1111112222221101 12356677777777777777777776654
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.23 E-value=7.2 Score=32.48 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHHHh
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF----EKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
++..-|.+.+++++|++++-.-. ..+.+.|+...+-++- +-+.+.++++|......++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444555666666666543321 1233344444433332 3333445556665555555555
Q ss_pred hccchh-----hHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCC
Q 016128 159 ADLSAL-----KLGKETHGHVIRAD--LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGE 231 (394)
Q Consensus 159 ~~~~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (394)
.....- .-..+.+..-.+.| ..-++.....+...|.+.+++.+|+..|- ....+.+..+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhcC
Confidence 443321 11112222222322 33477888888999999999999888773 2211223455444433333332
Q ss_pred hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
..+ ++...-..++. |.-.++...|..+++...
T Consensus 183 ~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 183 SHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred Ccc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 211 12222223333 334577777777665554
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.01 E-value=5.3 Score=28.00 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
+...+..+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+...
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33445555555554432112333334455555666666666666555544
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=87.86 E-value=5.4 Score=33.64 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=13.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHc
Q 016128 255 VAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
..++.-|...++.++|.+.++++
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL 243 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKEL 243 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHc
Confidence 34555555566666666666665
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.20 E-value=8.3 Score=33.66 Aligned_cols=99 Identities=9% Similarity=-0.044 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCCHHHH--
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHE--GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS---TGMVPSLKCV-- 151 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~-- 151 (394)
.+...+...|.+.|++++|.+.|.++... +..--...+-..++.+...+++..+...+.+... .+..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 34556667777777777777777777664 2222355666667777777777777777666542 2222222211
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11112234456677776666665443
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.32 E-value=6.7 Score=34.26 Aligned_cols=119 Identities=12% Similarity=-0.000 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 93 RSEKAMELFEGLAHEG-FKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQST--GMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
..++-.+..+...+.. ... -..++..+...|.+.|++++|.+.|.++... +...-...+..+++.+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3445555555554432 222 2346778999999999999999999999864 33334567888899999999999999
Q ss_pred HHHHHHHHcC-CCCCHHHHHHH----HHHHHHcCCchHHHHHHHHhhc
Q 016128 169 ETHGHVIRAD-LNKDESMATAL----ISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
..+.++...- -.++....+.+ +..+...+++..|.+.|-+...
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999875431 12232222211 2223456889998888876543
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.63 E-value=7.4 Score=27.30 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL 155 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 155 (394)
+..+-++.+...++.|++......+++|.+.+++.-|.++|+..+.+ ..+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 45566666666777777777777777777777777777777777654 222233454443
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.94 E-value=7.1 Score=25.66 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
....++|..+-+.+... +. ...+--.-+..+...|++++|..+.+...-||...|-.|.. .+.|-..++...+.+
T Consensus 19 ~H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567777777777654 22 22222223446778899999988888888888888877753 466777777666655
Q ss_pred HHhhC
Q 016128 344 LQEME 348 (394)
Q Consensus 344 ~~~~~ 348 (394)
+...+
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 54444
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.78 E-value=12 Score=28.35 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 016128 91 NGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 146 (394)
.+...++.++|..|..+|+--. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4557789999999988876543 5567888888889999999999999988887777
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.56 E-value=7.4 Score=25.61 Aligned_cols=80 Identities=14% Similarity=0.014 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
....++|..+-+.+... +. ...+--.-+..+...|++++|..+.+...-||...|-.|.. .+.|-..++...+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567777777777654 22 22222222446778888888888888888888888777653 356666666665544
Q ss_pred HHhhC
Q 016128 344 LQEME 348 (394)
Q Consensus 344 ~~~~~ 348 (394)
+...+
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 44433
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.73 E-value=11 Score=26.85 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 164 LKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
..++..+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+...
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3344444544444332112222233444555555555555555554443
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.59 E-value=31 Score=32.00 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHHHHHH-hcC--C---------chHHHHHHHHHHhhC-----------
Q 016128 294 VDLLGRSGRLDEARELIRELPEPTVS--VYHSLLGACW-CHL--N---------SDLGEEMAMKLQEME----------- 348 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~-~~g--~---------~~~a~~~~~~~~~~~----------- 348 (394)
..-+...|++++|..+|.-..+.|.+ +.|.++.-.. ... + .+.-..+.+++.+.-
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 34567899999999999999886665 5665553333 221 1 012233333333321
Q ss_pred CCCCchHHHHHHH-----HhhcCCcccHHHHHHHh
Q 016128 349 PENPTPFVILSNI-----YAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 349 ~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 378 (394)
+.+..++..|... +.+.|+|+.|++.++++
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2233455555443 36889999999888875
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.51 E-value=7 Score=29.69 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCC----CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 303 LDEARELIRELPE----PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 303 ~~~a~~~~~~~~~----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
..++..+|.-|.. .... .|......+...|++.+|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4455555544433 2222 45555555555566666666655555543
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.89 E-value=12 Score=24.56 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=20.3
Q ss_pred HHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016128 56 YLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAH 106 (394)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 106 (394)
+...|++++|..+.+... .||...|-+|-. .+.|--+++..-+.++..
T Consensus 49 LmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 344445555544444444 444444433322 233444444444433333
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.29 E-value=13 Score=24.50 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=22.1
Q ss_pred HHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016128 56 YLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 107 (394)
+...|++++|..+.+... .||...|-+|-. .+.|--+++..-+.++...
T Consensus 50 LmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 444555555555555544 455554443322 2334444444444444333
No 275
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=76.88 E-value=15 Score=31.94 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=56.2
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHhhhcCCchH--HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc
Q 016128 16 SVISACASLLYLQFGRQVHGLTLKIEKQSDTM--IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLN 91 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~ 91 (394)
+.+...+..|+.+.+..+++ .|..++.. ...+.+...+..|+.+-+.-+++.-.. ..+..- .+.+...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHC
Confidence 34555567777776555554 45444321 122345556677888877777775331 111111 2334455567
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHccCCHHHHHHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPAT--WNSMISGFSQLGMRFEAFKLFE 137 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~ 137 (394)
|+.+-+.-++ +.|..|+... -...+...+..|+.+-+..+++
T Consensus 91 g~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 91 GHTNMVKLLL----ENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp TCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHH----hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 7765444444 4454443211 1123334455666665554443
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.24 E-value=14 Score=26.64 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhC--CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccc
Q 016128 337 GEEMAMKLQEME--PENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTK 385 (394)
Q Consensus 337 a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 385 (394)
+.++|..+...+ ..-...|...+..+...|++.+|.++++.-++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566666665533 4444556666666667777777777777666655554
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.70 E-value=16 Score=29.12 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=12.1
Q ss_pred hcCChhhHHHHHHHHHHcCCCCC
Q 016128 228 RNGEYESAVEIFDLMQQEKVKPN 250 (394)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~ 250 (394)
..++.....++.+.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34444444555566666655443
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=75.11 E-value=28 Score=30.08 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=43.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHcc
Q 016128 51 ALVDMYLKCGCLPCAHNVFQELKGSRNIL--TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPA--TWNSMISGFSQL 126 (394)
Q Consensus 51 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~ 126 (394)
+.+...+..|+.+-+..+++.-. .++.. ...+.+...+..|+.+-+.-+++ .|..++.. .-...+...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTC-CSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHC
Confidence 34556677899988888887633 33221 12234555667788766555554 34333211 111234445566
Q ss_pred CCHHHHHHHH
Q 016128 127 GMRFEAFKLF 136 (394)
Q Consensus 127 ~~~~~a~~~~ 136 (394)
|+.+-+.-++
T Consensus 91 g~~~~v~~Ll 100 (437)
T 1n11_A 91 GHTNMVKLLL 100 (437)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7765444333
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.40 E-value=9.6 Score=27.91 Aligned_cols=29 Identities=10% Similarity=-0.037 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.|......+-..|++.+|.++|+..++..
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555555555555555555555543
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.35 E-value=24 Score=25.37 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 016128 97 AMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 97 a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 146 (394)
+.++|..|..+|+--. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6677777777655433 4455666666777777777777777766666565
No 281
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=71.16 E-value=12 Score=30.78 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCh--hHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKGSRNI--LTWNTMIAGMMLNGR--SEKAMELFEGLA 105 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~m~ 105 (394)
...++.-|...|+.++|...++++. .|.. .....++......++ -+.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~-~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN-LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC-CGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4667888888899999999999987 4431 222333443433332 233445556554
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=70.29 E-value=24 Score=25.41 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhc
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~ 73 (394)
.+.++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3456666666677777777777665
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.26 E-value=40 Score=27.01 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=31.9
Q ss_pred HhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 016128 20 ACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 73 (394)
.+.+.|+++.+++....-++.. |.|...=..++..+|-.|++++|.+-++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566666666666655554 5555556666666666666666666655544
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=69.25 E-value=30 Score=27.15 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (394)
+.......+..+.+.|+.++|..+|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 444455555666666666666666644
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.90 E-value=67 Score=28.67 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC---Chh---hHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPD---DPA---FWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
...+++.++..|...+.++.|..+..+..-... +.. .+--+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356778888888888999999999888753211 111 1223455667788888898888887654
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.66 E-value=37 Score=24.83 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 016128 95 EKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSL 148 (394)
Q Consensus 95 ~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 148 (394)
+.+.++|..|..+|+--. ...|......+...|++.+|.++|..-++.+-.|..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 346678888888766543 556677777888888888888888888877777743
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.25 E-value=68 Score=27.06 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCh--hHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKGSRNI--LTWNTMIAGMMLNGR--SEKAMELFEGLAHEGFKPDPATWNSMIS 121 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 121 (394)
....++.-|...++.++|...++++. .|.. .....++......++ -+.+-.++..+.. ++-+.......+..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~-~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN-LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT-CCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC-CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 34567788888899999999999987 3332 222333333333322 2345555665553 44444444444333
No 288
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=62.22 E-value=12 Score=21.85 Aligned_cols=50 Identities=24% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCC
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPG 388 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 388 (394)
.+..+.+.++.| +......-.-.-...|+.+.|+..+-.|...+..|+.|
T Consensus 10 ee~l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 10 EEDLKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp HHHHHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 344455555666 33333333333345678888888888888777666543
No 289
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=62.14 E-value=37 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=9.9
Q ss_pred HHHhcCcHHHHHHHHHhC
Q 016128 296 LLGRSGRLDEARELIREL 313 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~ 313 (394)
.|.+.|.+++|.++|++.
T Consensus 126 VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHH
Confidence 455555555555555553
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=62.06 E-value=46 Score=25.77 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 016128 95 EKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 95 ~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 146 (394)
+.+.++|..|..+|+--. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466678888877765543 4556777777777888888888887777666666
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.31 E-value=88 Score=30.65 Aligned_cols=85 Identities=9% Similarity=-0.061 Sum_probs=52.6
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----CC---------------
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----PT--------------- 317 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--------------- 317 (394)
++..|...|..+-+.++... ++.++..--.+.++|...|++++|...|++.-. ++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 55666777777766554332 333444445677788889999999999987753 00
Q ss_pred ----hh---hHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 318 ----VS---VYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 318 ----~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
.. -|..++..+-+.+-++.++++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00 3445555566666666666666666653
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.34 E-value=45 Score=24.01 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM--RFEAFKLFEKMQSTGMVPSLKCVTSVLSA 157 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 157 (394)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-+.......+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 456777788888888888888887532111 23344455555555332 45677788888777765544443333333
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.71 E-value=36 Score=26.35 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.|......+...|++.+|.++|+..++..
T Consensus 152 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 152 FYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 55555566666666666666666666544
No 294
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.02 E-value=60 Score=24.42 Aligned_cols=17 Identities=18% Similarity=-0.017 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHcCC
Q 016128 182 DESMATALISMYMKCGQ 198 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~ 198 (394)
+..+-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 44444444444444444
No 295
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=56.69 E-value=1.5e+02 Score=28.89 Aligned_cols=167 Identities=5% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHh---HHHHHHHHHHHHhh--hcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHH
Q 016128 15 ISVISACASLLY---LQFGRQVHGLTLKI--EKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMM 89 (394)
Q Consensus 15 ~~ll~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~ 89 (394)
..++...|+.|. .+.|.+.|+..... +.+.++..-..+...-.+.|.-++-..+++......+..--..++.+++
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~ 769 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALA 769 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhC
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHhhccchhhH
Q 016128 90 LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEK---MQSTGMVPSLKCVTSVLSACADLSALKL 166 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~---m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (394)
...+.+...++++................+..........+.|.+.+.+ ............+..++......-.-++
T Consensus 770 ~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~ 849 (909)
T 4fke_A 770 CSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEF 849 (909)
T ss_dssp TCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHcCCCC
Q 016128 167 GKETHGHVIRADLNK 181 (394)
Q Consensus 167 a~~~~~~~~~~~~~~ 181 (394)
-.+-++...+.....
T Consensus 850 ~~~~~~~f~~~~~~~ 864 (909)
T 4fke_A 850 ELQQLEQFKKNNMDV 864 (909)
T ss_dssp HHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHhhCCcc
No 296
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=55.58 E-value=68 Score=24.62 Aligned_cols=21 Identities=10% Similarity=-0.121 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHhhhcCCc
Q 016128 25 LYLQFGRQVHGLTLKIEKQSD 45 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~ 45 (394)
+++.+-+.+++.++..+....
T Consensus 33 ~dFrq~rdi~eall~~~l~~~ 53 (235)
T 3bu8_A 33 GDFRQIRDIMQALLVRPLGKE 53 (235)
T ss_dssp HHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHhCccccc
Confidence 455566666666654444333
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.47 E-value=8.6 Score=30.47 Aligned_cols=92 Identities=11% Similarity=-0.067 Sum_probs=52.4
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHH-------HHHHHHHHH--hcCChhHHHHHHHHhccC------------
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMI-------GTALVDMYL--KCGCLPCAHNVFQELKGS------------ 75 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~~~~~------------ 75 (394)
.+...++.|+.+....+++.+.+.+..++... .+.|..+.. +.|..+-+..+++.-...
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34455678999999999998888776555332 233333322 568888777777754211
Q ss_pred -CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 016128 76 -RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDP 113 (394)
Q Consensus 76 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 113 (394)
.|..-+ +.+...+..|+.+-+.- +.+.|..++.
T Consensus 88 ~~d~~g~-t~L~~A~~~g~~~~v~~----Ll~~ga~~~~ 121 (260)
T 3jxi_A 88 DVYYRGQ-TALHIAIERRCKHYVEL----LVEKGADVHA 121 (260)
T ss_dssp CSSEESB-CHHHHHHHTTCHHHHHH----HHHTTCCTTC
T ss_pred ccccCCC-CHHHHHHHcCCHHHHHH----HHhCCCCcCc
Confidence 111112 23445556777664444 4445655543
No 298
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.92 E-value=1e+02 Score=26.43 Aligned_cols=290 Identities=10% Similarity=0.036 Sum_probs=153.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHH---
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKP---DPATWNSMISGFSQL-GMRFEAFKLFEKMQSTGMVPSLKCV--- 151 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~--- 151 (394)
....|...|.+.|+.++..+++.....- +..| .......++..+... +..+.-.++..+..+..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4566888999999999999988876542 1222 233455677777664 3344445555554432111 11222
Q ss_pred ---HHHHHHhhccchhhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHhhcC----CCChhhH
Q 016128 152 ---TSVLSACADLSALKLGKETHGHVIRADLNKD-----ESMATALISMYMKCGQPSWARRFFDQFEIK----PDDPAFW 219 (394)
Q Consensus 152 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 219 (394)
.-++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+...... ++++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2567888899999999888888765321211 344556677788889998888888765432 2334331
Q ss_pred H----HHHHHHh-hcCChhhHHHHHHHHHHc-C-C-CC---CHhhHHHHHHHHHccCCHHHHHHHHH-HchhcCCCCCCH
Q 016128 220 N----AMISGYG-RNGEYESAVEIFDLMQQE-K-V-KP---NSASFVAVLSACGHAGHVDKALQIFT-MMDDDFGLKPKQ 287 (394)
Q Consensus 220 ~----~l~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 287 (394)
. .-...+. ..+++..|...|-+.... . . .| +...|..+.. ... ++..+...++. .....+ ..|..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~-~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IML-GQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHc-CCHHHHHHHhcccccccc-CCccH
Confidence 1 1122355 688888888877765421 1 1 11 1112322222 222 22222222221 111211 23555
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
..+..++.+|. .+++.+...+++.... .|... ...+..+.+. -.. ..+.++ ..|-....+..++..+.-
T Consensus 257 ~~l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l-~~h~~~L~~~-Ir~---~~L~~i--~~pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 257 DAMKSVAEASH-KRSLADFQAALKEYKKELAEDVIV-QAHLGTLYDT-MLE---QNLCRI--IEPYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHH-HHHHHHHHHH-HHH---HHHHHH--HTTCSEEEHHHHHHHHTC
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHH-HHH---HHHHHH--hHhhceeeHHHHHHHHCc
Confidence 55666666654 4677766666666543 33221 1111111000 000 111111 346555666666666543
Q ss_pred cCCcccHHHHHHHhhhccc
Q 016128 365 LGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~~ 383 (394)
..++++..+-+|+..|.
T Consensus 329 --s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --CHHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHHCCC
Confidence 66788888888876654
No 299
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.60 E-value=80 Score=24.83 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 016128 83 TMIAGMMLNGRSEKAMELF 101 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~ 101 (394)
+.+...++.|+.+.+..++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 4455566677765544444
No 300
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.34 E-value=26 Score=29.38 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCh---hHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKGSRNI---LTWNTMIAGMMLN-GRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 124 (394)
...++.-|...|+.++|...++++. .|.. ..+..+..++-+. ...+.+..++..+.+.|+-+... +..++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~-~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~----~~~Gf- 87 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA-SPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ----YYQGL- 87 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC-CGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH----HHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH----HHHHH-
Confidence 4678888999999999999999998 4432 1122222222221 12345566777777665442222 22221
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhhccchhhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL-SACADLSALKL---GKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
.+....+..+.- . .|....+-.-+ ..+...|-... ...+.+.+.+.|. .......++..+.+....+
T Consensus 88 -----~~~~~~l~Dl~l-D-iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~~vl~~l~~~~g~~ 158 (339)
T 1ug3_A 88 -----YEILELAEDMEI-D-IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLLEILGLLCKSMGPK 158 (339)
T ss_dssp -----HHHHHHHHHHTT-T-CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHHHHHHHHHHHHCHH
T ss_pred -----HHHHhhChHhhc-C-ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHcCHH
Confidence 222222222221 1 34544443332 22333333221 1122233333332 3344555666666666677
Q ss_pred HHHHHHHHh
Q 016128 201 WARRFFDQF 209 (394)
Q Consensus 201 ~a~~~~~~~ 209 (394)
.+.++|.+-
T Consensus 159 ~l~~~~~~s 167 (339)
T 1ug3_A 159 KVGTLWREA 167 (339)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 777777763
No 301
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.20 E-value=72 Score=23.93 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=92.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
.++..+-...+..+.+.|..+....+.+.+. .++...-...+.++.+.++.+ +...+..+.. .++...-...+.+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~a 104 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVA 104 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHH
Confidence 4566666777777788777554444455444 677777777777777777643 3344444443 3577777777788
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
+.+.++.+ +...+.++.. .++...-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.+.. ++
T Consensus 105 L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~ 175 (211)
T 3ltm_A 105 LGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RV 175 (211)
T ss_dssp HHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HH
T ss_pred HHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hH
Confidence 88877754 4455555553 456666666777777666643 3344444443 35666666777777777653 34
Q ss_pred HHHHHHh
Q 016128 203 RRFFDQF 209 (394)
Q Consensus 203 ~~~~~~~ 209 (394)
...+..+
T Consensus 176 ~~~L~~~ 182 (211)
T 3ltm_A 176 RAAMEKL 182 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.88 E-value=84 Score=24.59 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=46.9
Q ss_pred HHHHHhcCChhHHHHHHHHhcc-----CC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 53 VDMYLKCGCLPCAHNVFQELKG-----SR----NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
++.+....++++|..++++... ++ +...-...+..-+....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 4566677888888887776553 11 111122223333333333344444444422 34555566666777
Q ss_pred HccCCHHHHHHHHHHHH
Q 016128 124 SQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~ 140 (394)
.+.|+.++|..+|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77888888887776554
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.53 E-value=1.3e+02 Score=26.82 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhccCCCh------hHHH-HHHHHHHhcCCHHHHHHHHHHHHhc
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKGSRNI------LTWN-TMIAGMMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~ 107 (394)
.++|.+++.|...+.++.|..+..+..-+.+. ..|. -+...+.-.+++.+|.+.|......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566666666666666666666665421111 1111 1234445556666666666655543
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.14 E-value=61 Score=23.15 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=33.7
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 139 MQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 139 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44556554433 2234444444455666777777776666556666655566777777654
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.13 E-value=59 Score=22.56 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCh---hHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCC
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKGSRNI---LTWNTMIAGMMLNGR--SEKAMELFEGLAHEGFK 110 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~ 110 (394)
...++.-|...|+.++|...++++. .|.. .....+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~-~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3556777777788888888888876 3321 223333344444332 34566666666666554
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.88 E-value=67 Score=22.27 Aligned_cols=68 Identities=10% Similarity=0.195 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM--RFEAFKLFEKMQSTGMVPSLK 149 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 149 (394)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456788888999999999999988632111 23344455555655532 466778888888777654433
No 307
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=47.41 E-value=43 Score=19.94 Aligned_cols=47 Identities=6% Similarity=-0.235 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhc
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC 59 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 59 (394)
..++.++..+++..-++.++-.++++++.| ..+...|-.-++.+++.
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 357788889999999999999999999998 66777777767666654
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.24 E-value=59 Score=23.02 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=31.7
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 139 MQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 139 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
+.+.|+.++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4455555444322 23333333444555666666666665555555555566666666654
No 309
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.02 E-value=89 Score=23.17 Aligned_cols=151 Identities=16% Similarity=0.021 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
+..+-...+.++...+..+....+.+.+.. +++..-...+.++...++.+ +...+..+.. .++...-...+.++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 333334444444444443333333333322 34444334444444444432 2222222222 23444444444445
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
...++.+....+ ..+.. .++..+-...+.++.+.|+.+....+.+-+..++..+-...+.++...|. .++...+
T Consensus 101 ~~~~~~~~~~~L-~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L 174 (201)
T 3ltj_A 101 GQIGDERAVEPL-IKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 174 (201)
T ss_dssp HHHCCGGGHHHH-HHHTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHhCcHHHHHHH-HHHHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 444443222222 22222 24455555555555555543332233333333443344444455544443 2344444
Q ss_pred HHH
Q 016128 342 MKL 344 (394)
Q Consensus 342 ~~~ 344 (394)
..+
T Consensus 175 ~~~ 177 (201)
T 3ltj_A 175 EKL 177 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 310
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.91 E-value=99 Score=23.38 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhccCCChhH-------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016128 62 LPCAHNVFQELKGSRNILT-------WNTMIAGMMLNGRSEKAMELFEGLAH 106 (394)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~m~~ 106 (394)
++.|+.+|+.+...-+... --..+..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 4567777777664322110 11123445666666666666666433
No 311
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.79 E-value=97 Score=22.96 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
+..+-...+.++.+.+..+....+.+.+.. +++..-...+.++...|. ..+...+..+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKD--EDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 444444444444444443322222222222 333343444444444443 23444444443
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.73 E-value=84 Score=22.22 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHHHc
Q 016128 232 YESAVEIFDLMQQE 245 (394)
Q Consensus 232 ~~~a~~~~~~~~~~ 245 (394)
.-.|.++++.+.+.
T Consensus 37 ~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 37 HPTADDIYKALEGK 50 (145)
T ss_dssp CCCHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHh
Confidence 33344444444333
No 313
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=43.61 E-value=1.2e+02 Score=24.00 Aligned_cols=179 Identities=8% Similarity=-0.038 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016128 44 SDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGR----SEKAMELFEGLAHEGFKPDPATWNSM 119 (394)
Q Consensus 44 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~~~~~l 119 (394)
++..+-...+.++.+.|.. .+...+..+...++...-...+.++.+.|. ......++..+... .++..+-...
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a 111 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATA 111 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHH
Confidence 4555445556666666643 344444444336666555555666666553 22333334322112 2355555555
Q ss_pred HHHHHccCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016128 120 ISGFSQLGM-----RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194 (394)
Q Consensus 120 ~~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (394)
+.++...+. ...+...+..+.. .++..+-...+.++...++.+ +...+..+.+ .++..+-...+.++.
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 555554431 2344444444433 345555555666666665533 2333333332 245555555555555
Q ss_pred HcCC-chHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChh
Q 016128 195 KCGQ-PSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYE 233 (394)
Q Consensus 195 ~~g~-~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (394)
..|. ...+...+..+... +++..-...+.++.+.|+..
T Consensus 185 ~~~~~~~~~~~~L~~~l~d-~~~~vR~~A~~aL~~~~~~~ 223 (280)
T 1oyz_A 185 INKYDNSDIRDCFVEMLQD-KNEEVRIEAIIGLSYRKDKR 223 (280)
T ss_dssp HHTCCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCGG
T ss_pred hhccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCCHh
Confidence 5541 23344333333322 34445455555566666443
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.46 E-value=1e+02 Score=23.27 Aligned_cols=18 Identities=22% Similarity=-0.140 Sum_probs=9.0
Q ss_pred HHhhccchhhHHHHHHHH
Q 016128 156 SACADLSALKLGKETHGH 173 (394)
Q Consensus 156 ~~~~~~~~~~~a~~~~~~ 173 (394)
...+..|+.+....++..
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445555555555543
No 315
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.58 E-value=1.1e+02 Score=23.21 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
-.+.+.|+-.+.+|.+.| .|....-..++.+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 457777777777787777 665555555555554444
No 316
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=42.37 E-value=1.4e+02 Score=24.59 Aligned_cols=132 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc---CCHHHH
Q 016128 56 YLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL---GMRFEA 132 (394)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---~~~~~a 132 (394)
+...|++++|+..|+.+. +...+...-...+.+++.++++...+- ....-+..-.+. .+..+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL-------~~i~l~~v~~~~e~~e~~eli~icrEY-------ilal~iEl~Rr~l~~~~~kR~ 189 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI-------YRITLLMVDDAEDEKLAHKILETAREY-------ILGLSIELERRSLKEGNTVRM 189 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH-------HHHHTCCBCSSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTCCTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHH-------HHhheeeeccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCcccHHHH
Q ss_pred HHHHHHHHhCCCCCCHH--HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH
Q 016128 133 FKLFEKMQSTGMVPSLK--CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW 201 (394)
Q Consensus 133 ~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (394)
+++-.-+-.-.+.|... +....|..+.+.+++..|..+-+++++.+..++...-..-+...+...-.+.
T Consensus 190 lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da 260 (325)
T 3mv2_A 190 LELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDA 260 (325)
T ss_dssp HHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCS
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.67 E-value=63 Score=22.56 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=34.5
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccc-hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 139 MQSTGMVPSLKCVTSVLSACADLS-ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 139 m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
+.+.|+.++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4455655554332 3344444444 55667777777766665566666555666666666543
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.57 E-value=95 Score=22.51 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHc--CCCCCHhhHHHHHHHHHccC
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQE--KVKPNSASFVAVLSACGHAG 265 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 265 (394)
..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444455555555555544 43444444333344444433
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=40.86 E-value=63 Score=22.37 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=27.3
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH 266 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (394)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4455555555666777777777766655566555555555555443
No 320
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=40.56 E-value=91 Score=22.99 Aligned_cols=51 Identities=6% Similarity=-0.212 Sum_probs=36.4
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhc
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC 59 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 59 (394)
.|....++.++..++...-++.++-.++..+..| ..+..+|-.-++.+++.
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3455566888888888888888888888888777 56666666666666554
No 321
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=40.52 E-value=1.8e+02 Score=25.08 Aligned_cols=30 Identities=3% Similarity=-0.060 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+..--..++.+++...+.....++++....
T Consensus 266 ~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~ 295 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEKLQWLLDESFK 295 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 333444555555555555555555555444
No 322
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.23 E-value=57 Score=22.91 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH 266 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (394)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555555555666677777777766655566665555555555443
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.86 E-value=75 Score=20.64 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHH
Q 016128 60 GCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKA 97 (394)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 97 (394)
...+.|.++++.++ .....+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~-~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLE-TRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHT-TSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHH-HcChHHHHHHHHHHHHcCcHHHH
Confidence 35667777777776 55566677777777655554444
No 324
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.80 E-value=1e+02 Score=21.79 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=34.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 138 KMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 138 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
.+.+.|+.++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34556666555432 2333333444 556777777777766666666655566666666644
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.30 E-value=1.1e+02 Score=22.12 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=44.6
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCch
Q 016128 130 FEAFKLFEK-MQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA--DLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 130 ~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
+.+++-+.+ +.+.|+.++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444444443 34567776554 344556666666777888888888777 66667666666677777777553
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.10 E-value=58 Score=23.09 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 102 EGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 102 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 44566777766543 23344444555 6678888888887766666666555555555444
No 327
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=37.94 E-value=1.2e+02 Score=22.36 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=25.1
Q ss_pred HhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016128 57 LKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD 112 (394)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 112 (394)
++.|+++....++..-....+...-.+.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34566665555554322111101112334444455555544555555556655543
No 328
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.38 E-value=1.8e+02 Score=24.21 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=14.1
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHH
Q 016128 15 ISVISACASLLYLQFGRQVHGLTL 38 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~ 38 (394)
..++.-|...|+.++|.+.++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 445555666666666666655554
No 329
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.29 E-value=1.6e+02 Score=24.32 Aligned_cols=215 Identities=10% Similarity=-0.055 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHH
Q 016128 146 PSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESM--ATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMI 223 (394)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~ 223 (394)
.|..-.+.|..+ +..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+.-+++.-... .+..-++ .+
T Consensus 16 ~d~~g~t~L~~A-a~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~g~t-~L 88 (364)
T 3ljn_A 16 SDDENMEKIHVA-ARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-SLWHGQK-PI 88 (364)
T ss_dssp CCHHHHHHHHHH-HHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-CCBTTBC-HH
T ss_pred cCCCCCCHHHHH-HHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCC-HH
Confidence 355555555444 4556665554444 4454433211 122344556678877766666653321 1112222 33
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCH--------------------hhHHHHHHHHHccC--CHHHHHHHHHHchhcC
Q 016128 224 SGYGRNGEYESAVEIFDLMQQEKVKPNS--------------------ASFVAVLSACGHAG--HVDKALQIFTMMDDDF 281 (394)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 281 (394)
...+..|+.+-+..+++.....|..++. .-.+.|..+ +..| +.+-+..+++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~~~v~~Ll~~----- 162 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEYLEMIKILVQL----- 162 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGGHHHHHHHHHH-----
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCchHHHHHHHHHc-----
Confidence 3445678887777777776666766554 123344443 4445 56555555443
Q ss_pred CCCCCH---hhHHHHHHHHHhcCcHHHHHHHHHhCCC--------CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 282 GLKPKQ---EHFGCMVDLLGRSGRLDEARELIRELPE--------PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 282 ~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
|..++. .-.+ .+...+..|+.+-+..+++.... .+..-.+.|.. .+..|+.+-+.-+++.-...+..
T Consensus 163 ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~gad~~~~ 240 (364)
T 3ljn_A 163 GASPTAKDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW-AILINWEDVAMRFVEMGIDVNME 240 (364)
T ss_dssp TCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH-HHTTTCHHHHHHHHTTTCCTTCC
T ss_pred CCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCCCC
Confidence 333322 1222 23344567888888888876433 22223333333 34566665444444322222222
Q ss_pred CCchHHHHHHHHhhcCCcccHHHHHH
Q 016128 351 NPTPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
+..-...|..+ .+.|+.+-+.-+++
T Consensus 241 d~~g~tpL~~A-~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 241 DNEHTVPLYLS-VRAAMVLLTKELLQ 265 (364)
T ss_dssp CTTSCCHHHHH-HHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHH-HHhChHHHHHHHHH
Confidence 32333333333 33355554444443
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.21 E-value=68 Score=22.89 Aligned_cols=62 Identities=10% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccc-hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 138 KMQSTGMVPSLKCVTSVLSACADLS-ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 138 ~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
.+.+.|+.++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35566766655433 3444455555 56678888888877766667666666777777777654
No 331
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.04 E-value=1.7e+02 Score=23.95 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhcCCCC-hhhHHHHHHHHhhcCC--hhhHHHHHHHHHHcCCCCC
Q 016128 187 TALISMYMKCGQPSWARRFFDQFEIKPDD-PAFWNAMISGYGRNGE--YESAVEIFDLMQQEKVKPN 250 (394)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 250 (394)
..++.-|...|+.++|.+.++++...... ......+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 45677777888888888888887651011 1112333334443322 3456677777776665433
No 332
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.10 E-value=71 Score=20.75 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=21.2
Q ss_pred CchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhH
Q 016128 198 QPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESA 235 (394)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 235 (394)
..+.|.++++.+.. ..+..|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~--rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLET--RGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTT--SCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHH--cChHHHHHHHHHHHHcCcHHHH
Confidence 45666666666666 4455566666666555554433
No 333
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.18 E-value=79 Score=19.44 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=33.4
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccc-hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 139 MQSTGMVPSLKCVTSVLSACADLS-ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 139 m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-.
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 445565555443 33444444443 4555666777766665555565555566666665543
No 334
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.10 E-value=1.5e+02 Score=22.54 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=9.8
Q ss_pred HhcCcHHHHHHHHHhCCC
Q 016128 298 GRSGRLDEARELIRELPE 315 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~ 315 (394)
+..|+.+-...+++.-..
T Consensus 124 ~~~~~~~~~~~Ll~~g~~ 141 (241)
T 1k1a_A 124 VNTECQETVQLLLERGAD 141 (241)
T ss_dssp HHHTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHcCCC
Confidence 345666666656555443
No 335
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.78 E-value=1.6e+02 Score=22.72 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=15.8
Q ss_pred HHHHHHcCCchHHHHHHHHhhcC
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
+..|.+.|.+++|.+++++.-..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 44566777777777777776654
No 336
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.74 E-value=25 Score=20.50 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 95 EKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 95 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
++|.+.|.+|.+..-.++..||...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555544432222344455444444
No 337
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.97 E-value=58 Score=24.09 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=7.0
Q ss_pred HhcCChhHHHHHHHH
Q 016128 57 LKCGCLPCAHNVFQE 71 (394)
Q Consensus 57 ~~~g~~~~A~~~~~~ 71 (394)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 344555554444443
No 338
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.64 E-value=1.6e+02 Score=22.52 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=28.1
Q ss_pred HHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 118 SMISGFSQ---LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 118 ~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
.+++++.| -.+.+.|+-++-+|++.|-.|....-..++.+.-..|
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455443 4677888888888888776666555555555554444
No 339
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.02 E-value=93 Score=21.80 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=33.5
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556666666777888888888777666776666677777777754
No 340
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.66 E-value=77 Score=21.62 Aligned_cols=42 Identities=10% Similarity=-0.126 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 100 LFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 100 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+|+.+....+.|++..--.-+......++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555554444333334445667788888887777764
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.55 E-value=3.7e+02 Score=26.36 Aligned_cols=48 Identities=4% Similarity=-0.009 Sum_probs=31.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccc
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSL----KCVTSVLSACADLS 162 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~ 162 (394)
-|..++..+-+.+-++-+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5678888899999999888887777654212222 24566666655443
No 342
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.48 E-value=1.5e+02 Score=21.94 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=13.7
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCC
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
..+...|-.++...+|..+...+|
T Consensus 216 ~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 216 RRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhcccchhHHHHHHHHHhcCC
Confidence 334455666666666666655555
No 343
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.24 E-value=1.9e+02 Score=22.98 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=10.4
Q ss_pred HHHHHhcCcHHHHHHHHHh
Q 016128 294 VDLLGRSGRLDEARELIRE 312 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~ 312 (394)
+...+..|+.+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3344456666666555554
No 344
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.19 E-value=56 Score=25.01 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=10.1
Q ss_pred hhcCCcccHHHHHHHhhh
Q 016128 363 AGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~ 380 (394)
...|+...+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344555666666665544
No 345
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.96 E-value=1.4e+02 Score=21.15 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=14.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCV 151 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 151 (394)
+..+...+..-.|.++++.+.+.+...+..|.
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTV 64 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSV 64 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhH
Confidence 33333344444555555555544433344443
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.43 E-value=2.8e+02 Score=24.41 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=23.2
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
.+.+-|.++.. +.|++--...|..-.+.+...|++++|.++--...
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 44554444432 23333334445555555666666666666555543
No 347
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.26 E-value=1.7e+02 Score=21.72 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=25.3
Q ss_pred hcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016128 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEG 108 (394)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 108 (394)
-.|.+.+++-++.... ..+..-|..| +|-+.+++..|+..++.+....
T Consensus 45 yngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~k 92 (242)
T 3kae_A 45 LNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGK 92 (242)
T ss_dssp HTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc
Confidence 3566666666655543 2222223222 3445667777777777766443
No 348
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.06 E-value=1.8e+02 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
-.+.+.|+-.+-+|++.|-.|....-..++.+.-..|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4677888888888888876665555555555544443
No 349
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.81 E-value=1.8e+02 Score=21.91 Aligned_cols=137 Identities=13% Similarity=0.087 Sum_probs=67.2
Q ss_pred HHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh----hHHHHHHHHHccC
Q 016128 191 SMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA----SFVAVLSACGHAG 265 (394)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 265 (394)
...++.|+.+....+++.-... ..+..- ...+...+..|+.+- ++.+.+.|..++.. ..+. +...+..|
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~ 87 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDVRQPDKEN-VTLLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTP-LHWATRQG 87 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTS-CCHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCH-HHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHcCCCcCCCCCCC-CCHHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCCh-hHHHHHcC
Confidence 3456778887777776642221 122222 234455566677654 44445555443321 2233 34445567
Q ss_pred CHHHHHHHHHHchhcCCCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCCchHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPK---QEHFGCMVDLLGRSGRLDEARELIRELPEPT---VSVYHSLLGACWCHLNSDLGEE 339 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 339 (394)
+.+-+..+++. |..++ ..-.+ .+...+..|+.+-+..+++.-..++ ....+.+..+... +......+
T Consensus 88 ~~~~v~~Ll~~-----g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~ 160 (240)
T 3eu9_A 88 HLSMVVQLMKY-----GADPSLIDGEGCS-CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTR 160 (240)
T ss_dssp CHHHHHHHHHT-----TCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHH
T ss_pred CHHHHHHHHHc-----CCCCcccCCCCCC-HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHH
Confidence 77665555543 33332 21222 2344456788887777777654432 2233444444433 34333333
Q ss_pred H
Q 016128 340 M 340 (394)
Q Consensus 340 ~ 340 (394)
+
T Consensus 161 ~ 161 (240)
T 3eu9_A 161 L 161 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 350
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.36 E-value=90 Score=21.54 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=18.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL 126 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 126 (394)
+..+...+..-.|.++++.+.+.+...+..|....+..+...
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 333333444444555555555544444444433333333333
No 351
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=29.33 E-value=1.1e+02 Score=27.14 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=49.8
Q ss_pred HHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 294 VDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
.+...-...++.|..+|..... |+.. .||.|.......|+.-+|.-.|-+......+.+.+...+...+.+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3333344556778888877765 7777 888888777777887777777777777665567777777666654
No 352
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=29.27 E-value=77 Score=19.65 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=27.5
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 204 RFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
.++.++...|+++.+|+-+...+-+.--..++..+.+++-
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4556666668888888888877766666666666665543
No 353
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=29.08 E-value=1.8e+02 Score=21.84 Aligned_cols=14 Identities=14% Similarity=0.174 Sum_probs=7.0
Q ss_pred hcCcHHHHHHHHHh
Q 016128 299 RSGRLDEARELIRE 312 (394)
Q Consensus 299 ~~g~~~~a~~~~~~ 312 (394)
..|+.+-+..+++.
T Consensus 116 ~~~~~~~~~~Ll~~ 129 (228)
T 2dzn_A 116 GKKWFEVSQFLIEN 129 (228)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCCHhHHHHHHHc
Confidence 44555555555544
No 354
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=28.76 E-value=1.8e+02 Score=21.67 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=10.1
Q ss_pred HHhcCcHHHHHHHHHhCC
Q 016128 297 LGRSGRLDEARELIRELP 314 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~ 314 (394)
.+..|+.+-+..+++.-.
T Consensus 132 A~~~~~~~~v~~Ll~~g~ 149 (223)
T 2f8y_A 132 AAAVNNVDAAVVLLKNGA 149 (223)
T ss_dssp HHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCC
Confidence 345566666666665533
No 355
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.70 E-value=3e+02 Score=24.22 Aligned_cols=130 Identities=13% Similarity=0.042 Sum_probs=74.6
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhH
Q 016128 176 RADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (394)
+.|++--...|..-.+.+...|++++|-++--..+.. -+++.+.+.+-..=...|+..-.+.+|..+.+.| ..+..-=
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 3444444555655666777778888887777665442 3456665555555555666677777777777776 3344333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.-+++.-...|+.+-.++++.+= .+..+...=.. + +..+..-|+.+|.+..-
T Consensus 433 lEl~r~vL~q~r~~llekWl~e~----KL~~SEeLGDl-v----k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWLKED----KLECSEELGDL-V----KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHT----CSCCCHHHHHH-H----HHHCSHHHHHHHHHHCC
T ss_pred hHHhHHHHhccHHHHHHHHHhcC----CccccHHhHhh-h----hhcCHHHHHHHHHHcCC
Confidence 34555555667776666665543 44444433222 2 33355566666665544
No 356
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.63 E-value=1e+02 Score=21.43 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=12.0
Q ss_pred HHHHHHcCCchHHHHHHHH
Q 016128 190 ISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~ 208 (394)
+...+..|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444566777777777666
No 357
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.11 E-value=1.7e+02 Score=21.21 Aligned_cols=51 Identities=14% Similarity=0.004 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----hhccchhhHHHHHHHHHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMVP--SLKCVTSVLS-A-----CADLSALKLGKETHGHVIR 176 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 176 (394)
.|++-+|.++++..=.....+ ....|..||+ + ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777765543333 3445555555 2 1345566666666655543
No 358
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.90 E-value=1.6e+02 Score=20.84 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=30.2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 102 EGLAHEGFKPDPATWNSMISGFSQLG-MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 102 ~~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 345556666554432 2333444444 45556667766666554455555444444444443
No 359
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.21 E-value=2.4e+02 Score=22.48 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=25.4
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcCC----CChhhHHHHHHHHhh-cCChhhHHHHHHHHH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIKP----DDPAFWNAMISGYGR-NGEYESAVEIFDLMQ 243 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 243 (394)
++....+.+++++....++++.... .+..-.|.|..+|-. .|....+.+++..+.
T Consensus 14 ~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 14 MAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4444555566666666666554422 222224444444432 233344444444443
No 360
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.20 E-value=1.6e+02 Score=20.43 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 104 LAHEGFKPDPATWNSMISGFSQLG-MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 104 m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4455666544332 2334444444 45566666666666554445555444444443333
No 361
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.17 E-value=2e+02 Score=21.69 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=12.0
Q ss_pred HhhcCChhhHHHHHHHHHHcCCC
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
.+..|+.+.+..+++.+.+.|..
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Confidence 34456665555555555444433
No 362
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.02 E-value=2.1e+02 Score=21.73 Aligned_cols=57 Identities=12% Similarity=0.266 Sum_probs=36.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHhCCCCC
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR-----FEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~m~~~~~~~ 146 (394)
++..+.+.|+-.+-+|.+.| .|....-..++.+.-.-|.- .-|...++.....|.+-
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 45689999999999999999 66655556666666555532 23444444455555443
No 363
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.62 E-value=2.7e+02 Score=22.97 Aligned_cols=28 Identities=4% Similarity=0.037 Sum_probs=21.5
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
...-+....+.+++..|..+-+++.+.+
T Consensus 201 Lr~AM~~a~K~KNy~tAa~fArrLLel~ 228 (320)
T 3mkr_B 201 LRTALNLFFKLKNFRTAAAFARRLLELG 228 (320)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4555666778888888888888888864
No 364
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.76 E-value=2.2e+02 Score=21.56 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 127 (394)
++..+.+.|+-.+-+|.+.|..|....-..++.+.-.-|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 356789999999999999888776665555555554444
No 365
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.66 E-value=2e+02 Score=21.00 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=69.4
Q ss_pred HHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh---hHHHHHHHHHccC
Q 016128 191 SMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA---SFVAVLSACGHAG 265 (394)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 265 (394)
...+..|+.+....++..-... ..+..-++.|. ..+..|+.+ +++.+.+.|..++.. ..+.+. ..+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~ 83 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIE----IAKALIDRGADINLQNSISDSPYL-YAGAQG 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHH-HHHHcC
Confidence 3445678888777777654311 12222233333 334556544 444455556554432 223333 334557
Q ss_pred CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhC-CC---CChhhHHHHHHHHHhcCC-chHHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIREL-PE---PTVSVYHSLLGACWCHLN-SDLGEEM 340 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~l~~~~~~~g~-~~~a~~~ 340 (394)
+.+-+..+++..... -...+..-.+ .+...+..|+.+-+..+++.- .. ++..-.+.+..+. ..++ ...-.++
T Consensus 84 ~~~~~~~Ll~~~~~~-~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~ 160 (201)
T 3hra_A 84 RTEILAYMLKHATPD-LNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDI 160 (201)
T ss_dssp CHHHHHHHHHHSCCC-TTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHH
T ss_pred CHHHHHHHHhccCcc-cccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHH
Confidence 777666666443211 0111111111 223345667887777777765 22 2222334444443 3333 2223445
Q ss_pred HHHHHhhC
Q 016128 341 AMKLQEME 348 (394)
Q Consensus 341 ~~~~~~~~ 348 (394)
.+.+.+.+
T Consensus 161 v~~Ll~~g 168 (201)
T 3hra_A 161 VKLLMENG 168 (201)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 55555544
No 366
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.58 E-value=50 Score=25.77 Aligned_cols=55 Identities=11% Similarity=-0.163 Sum_probs=35.5
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCch-------HHHHHHHHHHHhc---CChhHHHHHHHHh
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDT-------MIGTALVDMYLKC---GCLPCAHNVFQEL 72 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---g~~~~A~~~~~~~ 72 (394)
.+...++.|+.+....+++.+.+.|..++. .-.+ .+...+.. |+.+-+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcC
Confidence 455567788999888888888877754443 2223 33444455 7777777777653
No 367
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.54 E-value=1.8e+02 Score=25.93 Aligned_cols=75 Identities=9% Similarity=-0.022 Sum_probs=52.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHHHHHh
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLGACWC 330 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 330 (394)
+..|.+.......++.|..+|..... -.+-+...|+.|.-.....|+.-+|.-.|-+... |-..+..++...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 33445555556778999999999876 3444567899888888878887777766655443 544577777777654
No 368
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.75 E-value=1.5e+02 Score=24.53 Aligned_cols=214 Identities=11% Similarity=0.040 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHH
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK---CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 188 (394)
|..-++.|. ..+..|+.+-+..++ +.|..++.. ..+ .+...+..|+.+- .+.+.+.|..++...-..
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLI----ETGVSPTIQNRFGCT-ALHLACKFGCVDT----AKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHH----HTTCCTTCCCTTCCC-HHHHHHHHCCHHH----HHHHHHHCCCCCCBTTBC
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHH----HcCCCccccCCCCCc-HHHHHHHcCCHHH----HHHHHHCCCCccccCCCC
Confidence 555555544 445667766555444 455544432 222 3334444566544 444444454333311222
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcCCCChhh----------------------HHHHHHHHhhcC--ChhhHHHHHHHHHH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAF----------------------WNAMISGYGRNG--EYESAVEIFDLMQQ 244 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~~--~~~~a~~~~~~~~~ 244 (394)
.+...+..|+.+-+..+++.......++.. ++.|. ..+..| +.+ +.+.+.+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~----~v~~Ll~ 161 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLE----MIKILVQ 161 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHH----HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHH----HHHHHHH
Confidence 444556778888777777764432233322 23333 334455 443 4444445
Q ss_pred cCCCCCHh---hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCCh
Q 016128 245 EKVKPNSA---SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMVDLLGRSGRLDEARELIRELPEPTV 318 (394)
Q Consensus 245 ~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 318 (394)
.|..++.. -.+.|. ..+..|+.+-+..+++.-....+..++ ..-.+ .+...+..|+.+-+..+++.-..++.
T Consensus 162 ~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 162 LGASPTAKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVEMGIDVNM 239 (364)
T ss_dssp HTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred cCCCCcccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 56555432 233443 344668888777777654321111111 11112 22334577888877777776544332
Q ss_pred h---hHHHHHHHHHhcCCchHHHHHHHH
Q 016128 319 S---VYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 319 ~---~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
. -.+.|..+ +..|+.+-+.-+++.
T Consensus 240 ~d~~g~tpL~~A-~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 240 EDNEHTVPLYLS-VRAAMVLLTKELLQK 266 (364)
T ss_dssp CCTTSCCHHHHH-HHTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHH-HHhChHHHHHHHHHc
Confidence 2 33334333 455666655555543
No 369
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.27 E-value=2.2e+02 Score=20.70 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHH------HHHccCCHHHHHHHHHHHHh
Q 016128 90 LNGRSEKAMELFEGLAHEGFKP--DPATWNSMIS------GFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~------~~~~~~~~~~a~~~~~~m~~ 141 (394)
..|++-+|-++++..=.....| ....|..||. ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478888888888877664444 4455666666 23457899999988888754
No 370
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.63 E-value=1.4e+02 Score=20.32 Aligned_cols=42 Identities=14% Similarity=-0.050 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
+|+.+....+.|+...--.-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444443333222223334556777777777766654
No 371
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.06 E-value=2e+02 Score=22.24 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=8.7
Q ss_pred HHHHcCCchHHHHHHHH
Q 016128 192 MYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~ 208 (394)
..++.|+.+....+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~ 27 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSF 27 (260)
T ss_dssp HHHHHTCGGGGTTHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 34455665555555553
No 372
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.04 E-value=2.9e+02 Score=22.71 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred CccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh----cCChhHHHHHHHHhccCC
Q 016128 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK----CGCLPCAHNVFQELKGSR 76 (394)
Q Consensus 1 M~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 76 (394)
+.+. |+.|...++.-++..+++.=.++.+.++|+.+...|...-..+.-+++..+.. ..++++....+.......
T Consensus 214 L~~~-~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~ 292 (331)
T 3qye_A 214 LEEH-EIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNL 292 (331)
T ss_dssp HHHT-TCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCC
T ss_pred HHHc-CCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~ 100 (394)
+......++.-.....-..+..++
T Consensus 293 ~~~di~~li~~A~~l~~s~~l~~~ 316 (331)
T 3qye_A 293 GLVQMEKTINQVFEMDIAKQLQAY 316 (331)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHH
No 373
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.49 E-value=2.7e+02 Score=20.79 Aligned_cols=182 Identities=12% Similarity=0.037 Sum_probs=89.5
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH---hhHHHHHHHHHc
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS---ASFVAVLSACGH 263 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 263 (394)
.+...+..|+.+....+++.-... ..+..-++.| ...+..|+.+ +++.+.+.|..++. ...+.+. ..+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLH-IAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHH-HHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHH-HHHH
Confidence 355667789999999888764321 2233333333 3345566654 44445555655443 2233333 3345
Q ss_pred cCCHHHHHHHHHHchhcCCCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHHHHHHhcCCchHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPK---QEHFGCMVDLLGRSGRLDEARELIRELPEPTVS--VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~ 338 (394)
.|+.+-+..+++. |..++ ..-.+ .+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+-+.
T Consensus 83 ~~~~~~v~~Ll~~-----g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 83 AGXDEIVKALLVK-----GAHVNAVNQNGCT-PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp HTCHHHHHHHHHT-----TCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHHc-----CCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 5777655555443 33332 21222 334445678888888888765543332 1122333334566666554
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccC
Q 016128 339 EMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLP 387 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 387 (394)
.+++.-...+..+..-...+-.+ .+.|+. ++.+.+.+.|..++.
T Consensus 157 ~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 157 ILLFYKASTNIQDTEGNTPLHLA-CDEERV----EEAKFLVTQGASIYI 200 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHH-HHTTCH----HHHHHHHHTTCCSCC
T ss_pred HHHhcCCCccccCCCCCCHHHHH-HHCCCH----HHHHHHHHCCCCCCC
Confidence 44442222222222222333222 344553 455556666766543
No 374
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.06 E-value=3e+02 Score=21.07 Aligned_cols=58 Identities=10% Similarity=0.217 Sum_probs=38.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHhCCCCC
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR-----FEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~m~~~~~~~ 146 (394)
++..+.+.|+-.+-+|.+.|..|.-..-..++.+.-.-|.- .-|...++.....|.+-
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 35688999999999999998877666666666666555432 34445555555556443
Done!