BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016129
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 183/359 (50%), Positives = 242/359 (67%), Gaps = 15/359 (4%)
Query: 5 EREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNM 64
E E++E + VVTKYK +IAN+ L+ +V GV ++ LCEKGD+ I E+TG +
Sbjct: 11 EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 70
Query: 65 YKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDE-TVLQEGDMIKIDLGCHIDGFIAVVA 123
+K +K++++G+AFP+ +SVNN +CHFSPL SD+ +L+EGD++KIDLG H+DGFIA VA
Sbjct: 71 FKK-EKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVA 129
Query: 124 HTHVL---QDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIV 180
HT V+ Q VTGR LRLV+PG +N VTEA KVA + +C +
Sbjct: 130 HTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPI 189
Query: 181 EGVLSHQLKQFVIDGNKVVLSVSNP-DTRVDD---AEFEENEVYAVDIVTSTGDGKPKLL 236
EG+LSHQLKQ VIDG K + + NP D + D AEFE +EVYAVD++ S+G+GK K
Sbjct: 190 EGMLSHQLKQHVIDGEKTI--IQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDA 247
Query: 237 DEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNH 295
++ TTIYKR K Y LKMK SR FSE+ ++F MPFT RA E EK+AR+G+VEC H
Sbjct: 248 GQR-TTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKH 306
Query: 296 ELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 352
ELLQP+ VL+EK G++VA KFTVLLMPNG RITS + +S + D E+KA L
Sbjct: 307 ELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 365
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 327 bits (839), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 183/359 (50%), Positives = 242/359 (67%), Gaps = 15/359 (4%)
Query: 5 EREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNM 64
E E++E + VVTKYK +IAN+ L+ +V GV ++ LCEKGD+ I E+TG +
Sbjct: 4 EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKI 63
Query: 65 YKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDE-TVLQEGDMIKIDLGCHIDGFIAVVA 123
+K +K++++G+AFP+ +SVNN +CHFSPL SD+ +L+EGD++KIDLG H+DGFIA VA
Sbjct: 64 FKK-EKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVA 122
Query: 124 HTHVL---QDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIV 180
HT V+ Q VTGR LRLV+PG +N VTEA KVA + +C +
Sbjct: 123 HTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPI 182
Query: 181 EGVLSHQLKQFVIDGNKVVLSVSNP-DTRVDD---AEFEENEVYAVDIVTSTGDGKPKLL 236
EG+LSHQLKQ VIDG K + + NP D + D AEFE +EVYAVD++ S+G+GK K
Sbjct: 183 EGMLSHQLKQHVIDGEKTI--IQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDA 240
Query: 237 DEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNH 295
++ TTIYKR K Y LKMK SR FSE+ ++F MPFT RA E EK+AR+G+VEC H
Sbjct: 241 GQR-TTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKH 299
Query: 296 ELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 352
ELLQP+ VL+EK G++VA KFTVLLMPNG RITS + +S + D E+KA L
Sbjct: 300 ELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 358
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/346 (51%), Positives = 235/346 (67%), Gaps = 15/346 (4%)
Query: 18 VVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVA 77
VVTKYK +IAN+ L+ +V GV ++ LCEKGD+ I E+TG ++K +K++++G+A
Sbjct: 10 VVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKK-EKEMKKGIA 68
Query: 78 FPSCVSVNNTLCHFSPLASDE-TVLQEGDMIKIDLGCHIDGFIAVVAHTHVL---QDGPV 133
FP+ +SVNN +CHFSPL SD+ +L+EGD++KIDLG H+DGFIA VAHT V+ Q V
Sbjct: 69 FPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGTQV 128
Query: 134 TGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVI 193
TGR LRLV+PG +N VTEA KVA + +C +EG+LSHQLKQ VI
Sbjct: 129 TGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVI 188
Query: 194 DGNKVVLSVSNP-DTRVDD---AEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVD 249
DG K + + NP D + D AEFE +EVYAVD++ S+G+GK K ++ TTIYKR
Sbjct: 189 DGEKTI--IQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQR-TTIYKRDPS 245
Query: 250 KNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKP 308
K Y LKMK SR FSE+ ++F MPF RA E EK+AR+G+VEC HELLQP+ VL+E+
Sbjct: 246 KQYGLKMKTSRAFFSEVERRFDAMPFALRAFEDEKKARMGVVECAKHELLQPFNVLYERE 305
Query: 309 GDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 352
G++VA KFTVLLMPNG RITS + +S + D E+KA L
Sbjct: 306 GEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 351
>pdb|4IPA|A Chain A, Structure Of A Thermophilic Arx1
pdb|4IPA|B Chain B, Structure Of A Thermophilic Arx1
pdb|4IPA|C Chain C, Structure Of A Thermophilic Arx1
pdb|4IPA|D Chain D, Structure Of A Thermophilic Arx1
Length = 423
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 192/376 (51%), Gaps = 40/376 (10%)
Query: 7 EEKELD--LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNM 64
E+KE D S +V+TKYK+AA+I+ K L V C PG KI+D+CE+GD + E+ +
Sbjct: 12 EKKEADNVAISVDVLTKYKTAAQISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKV 71
Query: 65 YKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDE----TVLQEGDMIKIDLGCHIDGFIA 120
Y++ KK +G + P+ VS + ++PL SDE T +Q G+ IKI LG IDG+
Sbjct: 72 YRD--KKTNKGFSHPTTVSPAAFITPYTPLRSDEKEAATEIQPGEPIKIQLGAQIDGYGT 129
Query: 121 VVAHTHVLQDGP----VTGRXXXXXXXXXXXXXXXLRL--------------------VR 156
+V T V ++ + GR LRL V+
Sbjct: 130 IVCDTIVAKNANDPDVIEGRQADLFLATYYANEVLLRLMVPPGLLATGTDEEKAKAAAVK 189
Query: 157 PGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEE 216
P + K ++ ++KVA A+DC I+E S + I+G K ++ + + + E
Sbjct: 190 PPSQAK-ISSLLEKVAKAYDCNIIESTTSWLFDKNEIEGKKKIILSPGENIKGEGVP-EV 247
Query: 217 NEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFT 276
+V+ V++ S G GK K E++ T+++R + Y LK SR I+SE+ +KF PF+
Sbjct: 248 GDVWGVEVGCSLGSGKVKQF-EQRATLHRR-TNNTYALKRPTSRKIYSEVQKKFGTFPFS 305
Query: 277 ARALEEKR-ARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRI---TSH 332
R LE++R A+ G++ECV + + Y V +K V + T+ + NG RI +
Sbjct: 306 LRQLEDERDAKSGVIECVRGGVFRQYEVTGDKDNAPVCRLLTTIAITKNGITRIGGPPAW 365
Query: 333 TLQEIQSTKTIDDPEI 348
L + ++ K I+D EI
Sbjct: 366 DLSKFKTDKKIEDEEI 381
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 154/331 (46%), Gaps = 32/331 (9%)
Query: 7 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYK 66
E+K LD S E+ ++ AAE + + V+S KPG+ ++++CEK + R K
Sbjct: 154 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------K 206
Query: 67 NVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
+K+ + G+AFP+ S+NN H++P A D TVLQ D+ KID G HI G I A T
Sbjct: 207 LIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 266
Query: 126 HVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKI------ 179
+ ++ + DV EAIQ+V +++ +I
Sbjct: 267 VTFNP-----KYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQ 321
Query: 180 ---VEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLL 236
+ + H + Q+ I K V V + EE EVYA++ STG G +
Sbjct: 322 VKPIRNLNGHSIGQYRIHAGKTVPIVKGGEA----TRMEEGEVYAIETFGSTGKG--VVH 375
Query: 237 DEKQTTIYKRAVDKNY-HLKMKASRFIFSEINQKFPIMPFTARALE---EKRARLGLVEC 292
D+ + + Y + D + +++ ++ + + IN+ F + F R L+ E + + L
Sbjct: 376 DDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNL 435
Query: 293 VNHELLQPYPVLHEKPGDYVAHIKFTVLLMP 323
+ ++ PYP L + G Y A + T+LL P
Sbjct: 436 CDLGIVDPYPPLCDIKGSYTAQFEHTILLRP 466
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 154/331 (46%), Gaps = 32/331 (9%)
Query: 7 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYK 66
E+K LD S E+ ++ AAE + + V+S KPG+ ++++CEK + R K
Sbjct: 154 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------K 206
Query: 67 NVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
+K+ + G+AFP+ S+NN H++P A D TVLQ D+ KID G HI G I A T
Sbjct: 207 LIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 266
Query: 126 HVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKI------ 179
+ ++ + DV EAIQ+V +++ +I
Sbjct: 267 VTFNP-----KYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQ 321
Query: 180 ---VEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLL 236
+ + H + Q+ I K V + + EE EVYA++ STG G +
Sbjct: 322 VKPIRNLNGHSIGQYRIHAGKTVPIIKGGEA----TRMEEGEVYAIETFGSTGKG--VVH 375
Query: 237 DEKQTTIYKRAVDKNY-HLKMKASRFIFSEINQKFPIMPFTARALE---EKRARLGLVEC 292
D+ + + Y + D + +++ ++ + + IN+ F + F R L+ E + + L
Sbjct: 376 DDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNL 435
Query: 293 VNHELLQPYPVLHEKPGDYVAHIKFTVLLMP 323
+ ++ PYP L + G Y A + T+LL P
Sbjct: 436 CDLGIVDPYPPLCDIKGSYTAQFEHTILLRP 466
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 154/331 (46%), Gaps = 32/331 (9%)
Query: 7 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYK 66
E+K LD S E+ ++ AAE + + V+S KPG+ ++++CEK + R K
Sbjct: 46 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------K 98
Query: 67 NVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
+K+ + G+AFP+ S+NN H++P A D TVLQ D+ KID G HI G I A T
Sbjct: 99 LIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 158
Query: 126 HVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKI------ 179
+ ++ + DV EAIQ+V +++ +I
Sbjct: 159 VTFNP-----KYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQ 213
Query: 180 ---VEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLL 236
+ + H + Q+ I K V V + EE EVYA++ STG G +
Sbjct: 214 VKPIRNLNGHSIGQYRIHAGKTVPIVKGGEA----TRMEEGEVYAIETFGSTGKG--VVH 267
Query: 237 DEKQTTIYKRAVDKNY-HLKMKASRFIFSEINQKFPIMPFTARALE---EKRARLGLVEC 292
D+ + + Y + D + +++ ++ + + IN+ F + F R L+ E + + L
Sbjct: 268 DDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNL 327
Query: 293 VNHELLQPYPVLHEKPGDYVAHIKFTVLLMP 323
+ ++ PYP L + G Y A + T+LL P
Sbjct: 328 CDLGIVDPYPPLCDIKGSYTAQFEHTILLRP 358
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 154/331 (46%), Gaps = 32/331 (9%)
Query: 7 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYK 66
E+K LD S E+ ++ AAE + + V+S KPG+ ++++CEK + R K
Sbjct: 45 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------K 97
Query: 67 NVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
+K+ + G+AFP+ S+NN H++P A D TVLQ D+ KID G HI G I A T
Sbjct: 98 LIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 157
Query: 126 HVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKI------ 179
+ ++ + DV EAIQ+V +++ +I
Sbjct: 158 VTFNP-----KYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQ 212
Query: 180 ---VEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLL 236
+ + H + Q+ I K V + + EE EVYA++ STG G +
Sbjct: 213 VKPIRNLNGHSIGQYRIHAGKTVPIIKGGEA----TRMEEGEVYAIETFGSTGKG--VVH 266
Query: 237 DEKQTTIYKRAVDKNY-HLKMKASRFIFSEINQKFPIMPFTARALE---EKRARLGLVEC 292
D+ + + Y + D + +++ ++ + + IN+ F + F R L+ E + + L
Sbjct: 267 DDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNL 326
Query: 293 VNHELLQPYPVLHEKPGDYVAHIKFTVLLMP 323
+ ++ PYP L + G Y A + T+LL P
Sbjct: 327 CDLGIVDPYPPLCDIKGSYTAQFEHTILLRP 357
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 36/309 (11%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPS 80
K A EIA K + + +PG+ +++L E + I E G AFP
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGK------------PAFPV 52
Query: 81 CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRXXXX 140
+S+N H++P D TVL+EGD +KID+G HIDGFIA D VT R
Sbjct: 53 NLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIA---------DTAVTVRVGME 103
Query: 141 XXXXXXXXXXXLR----LVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGN 196
L + R G + K++ +AI+ K + + H+++++ +
Sbjct: 104 EDELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAG 163
Query: 197 KVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKM 256
+ ++ P D+ +E +V+A++ + G G ++++ T IY ++ +++
Sbjct: 164 ISIPNIYRPH---DNYVLKEGDVFAIEPFATIGAG--QVIEVPPTLIYMYV--RDVPVRV 216
Query: 257 KASRFIFSEINQKFPIMPFTARALE----EKRARLGLVECVNHELLQPYPVLHEKPGDYV 312
+RF+ ++I +++ +PF R L+ E + +L L + YPVL E V
Sbjct: 217 AQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIV 276
Query: 313 AHIKFTVLL 321
A + T+++
Sbjct: 277 AQFEHTIIV 285
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 36/309 (11%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPS 80
K A EIA K + + +PG+ +++L E + I E G AFP
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGK------------PAFPV 52
Query: 81 CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRXXXX 140
+S+N H++P D TVL+EGD +KID+G HIDGFIA D VT R
Sbjct: 53 NLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIA---------DTAVTVRVGME 103
Query: 141 XXXXXXXXXXXLR----LVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGN 196
L + R G + K++ +AI+ K + + H+++++ +
Sbjct: 104 EDELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAG 163
Query: 197 KVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKM 256
+ ++ P D+ +E +V+A++ + G G ++++ T IY ++ +++
Sbjct: 164 ISIPNIYRPH---DNYVLKEGDVFAIEPFATIGAG--QVIEVPPTLIYMYV--RDVPVRV 216
Query: 257 KASRFIFSEINQKFPIMPFTARALE----EKRARLGLVECVNHELLQPYPVLHEKPGDYV 312
+RF+ ++I +++ +PF R L+ E + +L L + YPVL E V
Sbjct: 217 AQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIV 276
Query: 313 AHIKFTVLL 321
A + T+++
Sbjct: 277 AQFEHTIIV 285
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 133/313 (42%), Gaps = 39/313 (12%)
Query: 36 VVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLA 95
V S +PG+ ++++ I + T + K + G+ FP+ +S+N+ H++
Sbjct: 62 VQSIVRPGITLLEIVRS----IEDSTRTLLKGERNN---GIGFPAGMSMNSCAAHYTVNP 114
Query: 96 SDE-TVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDG--PVTGRXXXXXXXXXXXXXXXL 152
++ VL+E D++KID G H DG I A T ++ P+ +
Sbjct: 115 GEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENLEPLLVAAREGTETGIKSLGVDV 174
Query: 153 RLVRPGKKNKDVTEAIQKVAAAHDCKI--VEGVLSHQLKQFVIDGNKVVLSVSNPDTRVD 210
R+ G+ +V + + I + + H + QF I G + +V+N DT
Sbjct: 175 RVCDIGRDINEVISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAVNNRDT--- 231
Query: 211 DAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSE----- 265
+ + YAV+ +TG G +I R ++ L SR +F++
Sbjct: 232 -TRIKGDSFYAVETFATTGKG----------SIDDRPPCSHFVLNTYKSRKLFNKDLIKV 280
Query: 266 ---INQKFPIMPFTARALE-EKRARLGLVECVN----HELLQPYPVLHEKPGDYVAHIKF 317
+ +PF+ R L+ + G ++ VN LL PYP L++ G VA +
Sbjct: 281 YEFVKDSLGTLPFSPRHLDYYGLVKGGSLKSVNLLTMMGLLTPYPPLNDIDGCKVAQFEH 340
Query: 318 TVLLMPNGSDRIT 330
TV L +G + +T
Sbjct: 341 TVYLSEHGKEVLT 353
>pdb|4B6A|TT Chain t, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 614
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/450 (21%), Positives = 167/450 (37%), Gaps = 139/450 (30%)
Query: 9 KELDLTSPEVVTKYKSAAEIANKALQLVVS---------ECKPGVKIVDLCEKGDSFIRE 59
K+ ++ V+ KY++A +IA AL+ V S + + + +LC DSFI
Sbjct: 36 KDKNILQESVLNKYRTAGQIAQTALKYVTSLINDSYHSKTTQRQLTVPELCLLTDSFILT 95
Query: 60 QTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSP------------------LASDET-V 100
+ YKN K ERG+A P+ + ++ + P AS T
Sbjct: 96 RLEQYYKN--KVNERGIAIPTTIDIDQISGGWCPEIDDTQNLLNWNKGKDSTFASSVTGT 153
Query: 101 LQEGDMIKIDLGCHIDGFIAVVAHTHVLQ-----------DGPVTGRXXXXXXXXXXXXX 149
L+ GD++KI LG HIDG+ + V+HT V+ GP+ G
Sbjct: 154 LRPGDLVKITLGVHIDGYTSEVSHTMVIYPVDETKPILQPTGPLLGGKADAVAAAHIAME 213
Query: 150 XXLRLV----------------RPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVI 193
+ L+ G + + + +A +++C +V G ++++F+
Sbjct: 214 TVVALLACALTPEKLPASLGGTSSGITGQLIRTIVDTIARSYNCGVVPGSRVRRIRRFLA 273
Query: 194 DGNKVVLS------------------VSNPDTR--------------------VDDAEFE 215
N+ +++ +SN D + DD +
Sbjct: 274 GQNEGIVAEREYKGVVWTESHQEADLLSNTDAKDLTVVDRGQSTPFTNVSAIPSDDFVVQ 333
Query: 216 ENEVYAVDI-------VTSTG----------DGKPKLLDE--KQTTIYKRAVDKNYHLKM 256
EVY +D+ T G GK E + Y R + + LK+
Sbjct: 334 SGEVYLIDLKMASLEHCTKKGLVTLETVDSYTGKSHKAGELIARPGAYVRDFAQTHILKL 393
Query: 257 KASRFIFSEINQK--FPI--------MPFTARALEE--------KRARLGLVECVNHELL 298
K SR + ++I+++ +P PF EE K RLG+ E N+ L
Sbjct: 394 KTSRQLLTKIDKQGVYPFKLSHLSSNFPFVHENEEELQSLKKDLKSFRLGMSEISNNYLC 453
Query: 299 --QPYPVLHEKPGDYVAHIKFTVLLMPNGS 326
P + P D++ +K T PNG+
Sbjct: 454 VESPIQIARWVPWDHI--LKAT---NPNGN 478
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 63 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 117
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + Q
Sbjct: 118 PTIMGERLCRITQESLYLA--LRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQ 175
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 63 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 117
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + Q
Sbjct: 118 PTIMGERLCRITQESLYLA--LRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQ 175
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 62 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 116
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + Q
Sbjct: 117 PTIMGERLCRITQESLYLA--LRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQ 174
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 63 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 117
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + Q
Sbjct: 118 PTIMGERLCRITQESLYLA--LRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQ 175
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 17/178 (9%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGN----MYKNVKKKIERGV 76
K ++A ++A + L + KP V L + +FI YK K I
Sbjct: 16 KMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSI---- 71
Query: 77 AFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR 136
C S+N+ +CH P ++ L+ GD++ ID+ +DG+ + + + D V +
Sbjct: 72 ----CTSINHVVCHGIP---NDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGD--VAIK 122
Query: 137 XXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVID 194
+ +VRPG K D+ AIQ A H+ +V H + + D
Sbjct: 123 PKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHD 180
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 17/178 (9%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGN----MYKNVKKKIERGV 76
K ++A ++A + L + KP V L + +FI YK K I
Sbjct: 16 KMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSI---- 71
Query: 77 AFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR 136
C S+N+ +CH P ++ L+ GD++ ID+ +DG+ + + + D V +
Sbjct: 72 ----CTSINHVVCHGIP---NDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGD--VAIK 122
Query: 137 XXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVID 194
+ +VRPG K D+ AIQ A H+ +V H + + D
Sbjct: 123 PKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHD 180
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 63 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 117
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + +
Sbjct: 118 PTIMGE--RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGR 175
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 62 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 116
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + +
Sbjct: 117 PTIMGE--RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGR 174
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 62 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 116
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + +
Sbjct: 117 PTIMGE--RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGR 174
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 63 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 117
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + +
Sbjct: 118 PTIMGE--RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGR 175
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 62 ---HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 116
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + +
Sbjct: 117 PTIMGE--RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGR 174
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 7/178 (3%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
+ +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 2 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-- 59
Query: 73 ERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGP 132
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 60 -HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPT 116
Query: 133 VTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + +
Sbjct: 117 IMGERLCRITQESLYLA--LRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGR 172
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 7/178 (3%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
+ +PE + K + A +A + L+++ KPGV +L + +I + + +
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-- 61
Query: 73 ERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGP 132
G C+S+N +CH P D +L++GD++ ID+ DGF + ++
Sbjct: 62 -HGYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPT 118
Query: 133 VTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
+ G LR+V+PG +++ AIQK A +V H + +
Sbjct: 119 IMGERLCRITQESLYLA--LRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGR 174
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 13/175 (7%)
Query: 19 VTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAF 78
+ + K+ +++ + L + + KPG+ +L D + E T + +N+ F
Sbjct: 69 IQRIKTVCQLSREVLDIATAAAKPGITTDEL----DRIVHEAT--VERNMYPSPLNYYGF 122
Query: 79 PS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR 136
P C SVN +CH P D L+EGD++ ID+ +++GF + T + G
Sbjct: 123 PKSVCTSVNEVICHGIP---DSRELEEGDILNIDVSSYLNGFHGDLNETVFI--GRPDDD 177
Query: 137 XXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQF 191
+ +V+P K V +AI+ A+ + C +V H +
Sbjct: 178 SVRLVHAAYECLCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHL 232
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 8/180 (4%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ + +P + K K A + AL+ V PG D+ ++ + E +
Sbjct: 14 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDV----ETLVLEIFKKLRVKPAF 69
Query: 71 KIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD 130
K G + +CVSVN + H PL E V +EGD++ +D+G G A T+++
Sbjct: 70 KGYGGYKYATCVSVNEEVVHGLPL--KEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV-- 125
Query: 131 GPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQ 190
G R +++++PG + DV+ IQ+ + ++ + H + +
Sbjct: 126 GETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGR 185
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 6 REEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMY 65
+E E + +PEV+ K + A IA AL PGV +L ++ + G
Sbjct: 37 QEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDN-GAYP 95
Query: 66 KNVKKKIERGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDG 117
+ K FP C S+N +CH P D TV+ +GD++ ID+ +I G
Sbjct: 96 STLGYK-----GFPKSCCTSLNEVICHGIP---DSTVITDGDIVNIDVTAYIGG 141
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 6 REEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMY 65
+E E + +PEV+ K + A IA AL PGV +L ++ + G
Sbjct: 40 QEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDN-GAYP 98
Query: 66 KNVKKKIERGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDG 117
+ K FP C S+N +CH P D TV+ +GD++ ID+ +I G
Sbjct: 99 STLGYK-----GFPKSCCTSLNEVICHGIP---DSTVITDGDIVNIDVTAYIGG 144
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 6 REEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMY 65
+E E + +PEV+ K + A IA AL PGV +L ++ + G
Sbjct: 34 QEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDN-GAYP 92
Query: 66 KNVKKKIERGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDG 117
+ K FP C S+N +CH P D TV+ +GD++ ID+ +I G
Sbjct: 93 STLGYK-----GFPKSCCTSLNEVICHGIP---DSTVITDGDIVNIDVTAYIGG 138
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGAITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 1 MSDDEREEK---ELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFI 57
MS+ E+ K ++ L S E + + +A + L + KPGV E+ D +
Sbjct: 36 MSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTT----EEIDHAV 91
Query: 58 REQTGNMYKNVKKKIERGVAFP--SCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHI 115
+ +N FP C SVN +CH P D LQEGD++ +D+ +
Sbjct: 92 --HLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIP---DRRPLQEGDIVNVDITLYR 146
Query: 116 DGFIAVVAHTHVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAH 175
+G+ + T + G V + V+PG + +++ IQK A A+
Sbjct: 147 NGYHGDLNETFFV--GEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQAN 204
Query: 176 DCKIVEGVLSHQLKQF 191
+V H + +
Sbjct: 205 GFSVVRSYCGHGIHKL 220
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 8 EKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKN 67
+K ++ +P + +A I AL V K GV ++L + +S IRE G +
Sbjct: 29 KKTVEQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIRE-AGAVPSF 87
Query: 68 VKKKIERGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
+ FP+ C SVN+ + H P A+ VL +GD++ ID G +DG+ A T
Sbjct: 88 LGYH-----GFPASICSSVNDQVVHGIPSAT--AVLADGDLVSIDCGAILDGWHGDSAWT 140
Query: 126 HVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQ 169
+ G V + + PG + DV+ AI+
Sbjct: 141 FAV--GTVIPSDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIE 182
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 1 MSDDEREEK---ELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFI 57
MS+ E+ K ++ L S E + + +A + L + KPGV E+ D +
Sbjct: 35 MSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTT----EEIDHAV 90
Query: 58 REQTGNMYKNVKKKIERGVAFP--SCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHI 115
+ +N FP C SVN +CH P D LQEGD++ +D+ +
Sbjct: 91 --HLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIP---DRRPLQEGDIVNVDITLYR 145
Query: 116 DGFIAVVAHTHVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAH 175
+G+ + T + G V + V+PG + +++ IQK A A+
Sbjct: 146 NGYHGDLNETFFV--GEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQAN 203
Query: 176 DCKIVEGVLSHQLKQF 191
+V H + +
Sbjct: 204 GFSVVRSYCGHGIHKL 219
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 1 MSDDEREEK---ELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFI 57
MS+ E+ K ++ L S E + + +A + L + KPGV E+ D +
Sbjct: 60 MSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTT----EEIDHAV 115
Query: 58 REQTGNMYKNVKKKIERGVAFP--SCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHI 115
+ +N FP C SVN +CH P D LQEGD++ +D+ +
Sbjct: 116 --HLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIP---DRRPLQEGDIVNVDITLYR 170
Query: 116 DGFIAVVAHTHVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAH 175
+G+ + T + G V + V+PG + +++ IQK A A+
Sbjct: 171 NGYHGDLNETFFV--GEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQAN 228
Query: 176 DCKIVEGVLSHQLKQF 191
+V H + +
Sbjct: 229 GFSVVRSYCGHGIHKL 244
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 6 REEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMY 65
+E E + +PEV+ K + A IA AL PGV +L ++ + G
Sbjct: 40 QEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDN-GAYP 98
Query: 66 KNVKKKIERGVAFP-SC-VSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDG 117
+ K FP SC S+N +CH P D TV+ +GD++ ID+ +I G
Sbjct: 99 STLGYK-----GFPKSCSTSLNEVICHGIP---DSTVITDGDIVNIDVTAYIGG 144
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRHG 223
Query: 73 ERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGP 132
R ++ + V C + +E +++GD++ ID GC G+ + T + +G
Sbjct: 224 ARYPSYNTIVGSGENGCILA-YTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPV-NGK 281
Query: 133 VTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFV 192
T LRL RPG +VT + ++ + K+ G+L + + +
Sbjct: 282 FTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGDVDELI 339
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 24/185 (12%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ E +++GD++ ID GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYTENECXE--MRDGDLVLIDAGCEYKGYAGDITRTFP 278
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 279 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 335
Query: 188 LKQFV 192
+ + +
Sbjct: 336 VDELI 340
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIR---EQTGNMYKN 67
+ L SP + + E+ + + + KPG+ D+ + F+R E G +
Sbjct: 2 ITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDI----EVFVRDFIESHGGVAAQ 57
Query: 68 VKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
+ + G + +C S+N+ +CH P + VL++GD+IK+D+ + G I+ ++V
Sbjct: 58 IGYE---GYKYATCCSINDEICHGFP---RKKVLKDGDLIKVDMCVDLKGAISDSCWSYV 111
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ G T + + G + D+ AIQ +V + H
Sbjct: 112 V--GESTPEIDRLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHG 169
Query: 188 L 188
+
Sbjct: 170 I 170
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 25/185 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
SPE + + A EI A + +C+PG+ F G ++ +
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM-----------FEYHLEGEIHHEFNRH- 222
Query: 73 ERGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
G +PS ++ N + H++ +E +++GD++ I GC G+ + T
Sbjct: 223 --GARYPSYNTIVGSGENGCILHYT---ENECEMRDGDLVLIAAGCEYKGYAGDITRTFP 277
Query: 128 LQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQ 187
+ +G T LRL RPG +VT + ++ + K+ G+L
Sbjct: 278 V-NGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL--GILKGD 334
Query: 188 LKQFV 192
+ + +
Sbjct: 335 VDELI 339
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 78 FP--SCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVL--QDGPV 133
FP +C+SVN + H P + V++EGD++ ID+ +G+ A + V+ D P+
Sbjct: 62 FPGQTCISVNEEVAHGIP---SKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPM 118
Query: 134 TGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSH 186
+ + V+PG K ++ +A+ A +D K+++ + H
Sbjct: 119 KQKVCDVATMAFENA---IAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGH 168
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGV--AFPS 80
K AA+IA+ A + ++S +PGV +++ + + F+R+Q G + + G+ A P
Sbjct: 140 KEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQ-GATSSSFDIIVASGLRSALPH 198
Query: 81 CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
V + E V++ GD + +D G + G+ + + T
Sbjct: 199 GV-------------ASEKVIETGDFVTLDFGAYYKGYCSDITRT 230
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 21/132 (15%)
Query: 6 REEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFI-----REQ 60
+ + ++ + + E + + + A + K L + PGV ++ K FI
Sbjct: 96 KRKSDIYVNNEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPS 155
Query: 61 TGNMYKNVKKKIERGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGF 118
T N YK FP C SVN +CH P D L+ GD+I ID+ G
Sbjct: 156 TLNYYK-----------FPKSCCTSVNEIVCHGIP---DYRPLKSGDIINIDISVFYKGV 201
Query: 119 IAVVAHTHVLQD 130
+ + T+ + D
Sbjct: 202 HSDLNETYFVGD 213
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 85 NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRXXXXXXXX 144
N T+ H+ ++ +Q GD++ +DLG D + A +++T +G + R
Sbjct: 234 NATVLHYE---DNDAQIQNGDLVLLDLGAQKDYYNADISYT-FPANGTFSSRQKQIYNIV 289
Query: 145 XXXXXXXLRLVRPGKKNKDVTEAIQKVAAAHDCKIV 180
+++PG K + E +KV A CK V
Sbjct: 290 LNALKETTEIIKPGLKFAALNEHAKKV-LAEGCKAV 324
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 20/166 (12%)
Query: 9 KELDLTS-PEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKN 67
KEL + E V + A+ IA+K + +++ G+K +L K + IRE
Sbjct: 126 KELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRE-------- 177
Query: 68 VKKKIERGVAFPSCVSVNNTLC--HFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
+ G+AF V+ H P E +++GD+I +D G G+ + + T
Sbjct: 178 ----LSDGIAFEPIVASGENAANPHHEP---GERKIRKGDIIILDYGARWKGYCSDITRT 230
Query: 126 HVLQDGPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKV 171
L G + R + VR G K KDV ++V
Sbjct: 231 IGL--GELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREV 274
>pdb|1C3V|A Chain A, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1C3V|B Chain B, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1P9L|A Chain A, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
pdb|1P9L|B Chain B, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
Length = 245
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 158 GKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGN-KVVLSVSNPDTRVDDAEFE- 215
G K K T ++ VAAA D + + + + DGN +VV+ ++PD + + EF
Sbjct: 7 GAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLI 66
Query: 216 ENEVYAVDIVTSTG 229
+N ++AV V +TG
Sbjct: 67 DNGIHAV--VGTTG 78
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 19 VTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAF 78
+ K K A EI+ +A V + + G + EK + + E T ++K+ GVAF
Sbjct: 139 IEKIKQAIEISERAFLETVQQIRAG-----MTEKEIAALLEYT------MRKEGAEGVAF 187
Query: 79 PSCVS--VNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIA 120
+ V+ + L H ASD+ V++ GD+I ID G + + A
Sbjct: 188 DTIVASGCRSALPH--GKASDK-VVERGDVIVIDFGATYENYCA 228
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPS 80
K K EI +A + V KPG+ +L + I E Y N + GV
Sbjct: 236 KQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYGEYFN--HSLGHGVGLE- 292
Query: 81 CVSVNNTLCHFSPLAS--DETVLQEGDMIKIDLGCHI 115
H P S DETVL+EG +I I+ G +I
Sbjct: 293 --------VHEWPRVSQYDETVLREGMVITIEPGIYI 321
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 44 VKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQE 103
V++ ++C K + +I + G M +++ E G A L FSPL + + L
Sbjct: 189 VELAEICAKSERYIGTEGGGMDQSISFLAEEGTA---------KLIEFSPLRATDVKLPS 239
Query: 104 GDMIKIDLGC 113
G + I C
Sbjct: 240 GAVFVIANSC 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,674,940
Number of Sequences: 62578
Number of extensions: 410901
Number of successful extensions: 1177
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 61
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)