Query 016131
Match_columns 394
No_of_seqs 259 out of 941
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 7E-13 1.5E-17 98.8 4.7 52 268-320 6-60 (60)
2 smart00353 HLH helix loop heli 99.3 4.8E-12 1E-16 92.8 6.3 49 271-320 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 5.6E-12 1.2E-16 94.0 4.9 48 269-316 4-55 (55)
4 KOG1318 Helix loop helix trans 99.2 8.9E-12 1.9E-16 127.1 4.9 77 264-340 231-316 (411)
5 KOG1319 bHLHZip transcription 98.8 4.3E-09 9.2E-14 98.6 5.2 64 269-332 65-134 (229)
6 KOG4304 Transcriptional repres 98.4 1.5E-07 3.3E-12 91.1 2.1 52 269-320 35-93 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.0 4.3E-06 9.4E-11 91.9 5.1 52 267-318 21-75 (803)
8 KOG2483 Upstream transcription 98.0 1.3E-05 2.8E-10 77.3 6.5 61 267-327 60-122 (232)
9 PLN03217 transcription factor 97.8 4.8E-05 1E-09 63.7 6.0 55 275-330 16-76 (93)
10 KOG2588 Predicted DNA-binding 97.7 1.7E-05 3.7E-10 88.1 2.2 67 264-330 274-340 (953)
11 KOG0561 bHLH transcription fac 97.1 0.00024 5.1E-09 71.2 2.2 49 269-318 63-113 (373)
12 KOG3960 Myogenic helix-loop-he 97.0 0.0018 3.8E-08 63.7 6.6 56 270-325 122-178 (284)
13 KOG4029 Transcription factor H 96.6 0.0021 4.6E-08 60.9 3.7 58 269-326 112-172 (228)
14 KOG3910 Helix loop helix trans 95.2 0.023 5E-07 60.5 4.6 55 268-322 528-585 (632)
15 KOG4447 Transcription factor T 88.9 0.21 4.5E-06 46.4 1.4 48 269-317 81-130 (173)
16 KOG3558 Hypoxia-inducible fact 85.1 0.62 1.3E-05 51.7 2.7 43 272-314 52-97 (768)
17 KOG3560 Aryl-hydrocarbon recep 84.7 0.85 1.8E-05 49.6 3.4 39 274-313 33-75 (712)
18 KOG3559 Transcriptional regula 75.5 2.4 5.2E-05 45.0 3.1 45 272-316 7-54 (598)
19 KOG3898 Transcription factor N 61.5 5.3 0.00012 39.2 2.1 47 270-317 76-125 (254)
20 PF05308 Mito_fiss_reg: Mitoch 43.1 78 0.0017 31.4 6.8 26 304-329 116-141 (253)
21 KOG4395 Transcription factor A 43.1 34 0.00074 34.5 4.3 65 269-333 177-243 (285)
22 PF13334 DUF4094: Domain of un 41.6 46 0.00099 28.4 4.3 25 305-329 68-92 (95)
23 KOG3582 Mlx interactors and re 40.0 15 0.00032 41.4 1.5 57 268-324 653-713 (856)
24 PF09849 DUF2076: Uncharacteri 38.9 1.8E+02 0.0039 28.9 8.6 25 301-328 49-73 (247)
25 COG3074 Uncharacterized protei 30.8 69 0.0015 26.7 3.5 27 305-331 13-39 (79)
26 KOG3582 Mlx interactors and re 30.3 16 0.00035 41.2 -0.2 60 265-327 786-849 (856)
27 KOG1924 RhoA GTPase effector D 28.1 2.1E+02 0.0046 33.4 7.8 27 300-326 455-483 (1102)
28 KOG1924 RhoA GTPase effector D 26.6 1.3E+02 0.0029 34.9 6.0 10 307-316 475-484 (1102)
29 KOG3584 cAMP response element 26.6 52 0.0011 33.9 2.7 42 275-329 290-331 (348)
30 PF06005 DUF904: Protein of un 24.9 1.1E+02 0.0023 25.0 3.7 25 305-329 13-37 (72)
31 PRK15422 septal ring assembly 24.4 1E+02 0.0022 26.0 3.5 28 305-332 13-40 (79)
32 KOG4447 Transcription factor T 24.2 55 0.0012 30.9 2.2 24 273-296 29-52 (173)
33 PF03233 Cauli_AT: Aphid trans 24.1 1E+02 0.0022 29.1 3.9 49 278-329 113-161 (163)
34 PF10393 Matrilin_ccoil: Trime 22.6 76 0.0017 24.1 2.3 30 302-331 15-44 (47)
35 PF14689 SPOB_a: Sensor_kinase 21.9 1.8E+02 0.0039 22.5 4.3 41 275-323 17-57 (62)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.36 E-value=7e-13 Score=98.80 Aligned_cols=52 Identities=37% Similarity=0.641 Sum_probs=48.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 016131 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVE 320 (394)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe 320 (394)
..|+..||+||++||+.|..|+.|||.+ .+ .+|+.||+.||+||++|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999999999 55 5999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.30 E-value=4.8e-12 Score=92.84 Aligned_cols=49 Identities=39% Similarity=0.569 Sum_probs=44.6
Q ss_pred chhhHHHHHHHHHHHHHHHccCCC---CCCCCChhhHHHHHHHHHHHHHHHHH
Q 016131 271 SLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVE 320 (394)
Q Consensus 271 slaERrRRekIner~~~Lq~LVP~---~~K~tdKAsIL~eAI~YIK~LQ~qVe 320 (394)
+..||+||++||+.|..|+.|||. ..+ .+|++||++||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999996 445 4999999999999999999986
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.26 E-value=5.6e-12 Score=93.97 Aligned_cols=48 Identities=38% Similarity=0.705 Sum_probs=44.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCC----CCCCChhhHHHHHHHHHHHHH
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 316 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~----~K~tdKAsIL~eAI~YIK~LQ 316 (394)
.|+..||+||++||+.|..|+.|||.+ ....+|++||+.||+||++||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 699999999999999999999999997 233599999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.21 E-value=8.9e-12 Score=127.13 Aligned_cols=77 Identities=35% Similarity=0.602 Sum_probs=58.0
Q ss_pred CCccCCcchhhHHHHHHHHHHHHHHHccCCCCCCC---CChhhHHHHHHHHHHHHHHHHHHH------HHhHhhcCCccc
Q 016131 264 GQATNSHSLAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQSLQQQVEFL------SMKLATVNPELN 334 (394)
Q Consensus 264 ~~a~~~HslaERrRRekIner~~~Lq~LVP~~~K~---tdKAsIL~eAI~YIK~LQ~qVe~L------e~~~~~~~p~~~ 334 (394)
+++++.|+++|||||++||+||+.|..|||.|+.- .+|..||..+++||+.||+..+.. +++++..+..|.
T Consensus 231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~ 310 (411)
T KOG1318|consen 231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELA 310 (411)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHH
Confidence 34456899999999999999999999999999431 379999999999999999655522 233444444444
Q ss_pred ccHHHH
Q 016131 335 LDIERI 340 (394)
Q Consensus 335 ~~~~~~ 340 (394)
..++.|
T Consensus 311 ~rieeL 316 (411)
T KOG1318|consen 311 LRIEEL 316 (411)
T ss_pred HHHHHH
Confidence 445544
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.81 E-value=4.3e-09 Score=98.59 Aligned_cols=64 Identities=31% Similarity=0.525 Sum_probs=57.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCCCCC------CChhhHHHHHHHHHHHHHHHHHHHHHhHhhcCCc
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 332 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~~K~------tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~p~ 332 (394)
.|.-+||+||+.|+..+..||.|||.|... +.||.||.++|+||.+|+.++...++++.+++.+
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~ 134 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKD 134 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999977542 3699999999999999999998888888877665
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.36 E-value=1.5e-07 Score=91.09 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=45.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCCCCC-------CChhhHHHHHHHHHHHHHHHHH
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGCNKI-------TGKAVMLDEIINYVQSLQQQVE 320 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~~K~-------tdKAsIL~eAI~YIK~LQ~qVe 320 (394)
.|.+.||+||.|||+.|..|++|||.+.++ .+||.||+-|++|++.||++..
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 578999999999999999999999966443 2799999999999999996543
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.04 E-value=4.3e-06 Score=91.94 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=47.7
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHccCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 016131 267 TNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQ 318 (394)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~---K~tdKAsIL~eAI~YIK~LQ~q 318 (394)
+..|+.+|||||+++|..|.+|.+|||.|. .+.||-.||.+||..||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 348999999999999999999999999997 4469999999999999999875
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.98 E-value=1.3e-05 Score=77.31 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=49.5
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHccCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHhHh
Q 016131 267 TNSHSLAERVRREKISERMRLLQELVPGCNKIT--GKAVMLDEIINYVQSLQQQVEFLSMKLA 327 (394)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~t--dKAsIL~eAI~YIK~LQ~qVe~Le~~~~ 327 (394)
+..|+.-||+||..|.++|..|+.+||....-+ ..++||+.|++||+.|+.+....+..++
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 347999999999999999999999999654432 2689999999999999976655554443
No 9
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.79 E-value=4.8e-05 Score=63.75 Aligned_cols=55 Identities=29% Similarity=0.530 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHccCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131 275 RVRREKISERMRLLQELVPGCN------KITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN 330 (394)
Q Consensus 275 RrRRekIner~~~Lq~LVP~~~------K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~ 330 (394)
|-=-+.|++-+..||.|+|... +. .-+-+|+||++||+.|+++|..|++++.++-
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445889999999999999642 32 5677999999999999999999999998753
No 10
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.68 E-value=1.7e-05 Score=88.10 Aligned_cols=67 Identities=27% Similarity=0.502 Sum_probs=57.3
Q ss_pred CCccCCcchhhHHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131 264 GQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN 330 (394)
Q Consensus 264 ~~a~~~HslaERrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~ 330 (394)
+..+++|+++|||-|-.||++|..|++|||+..-+..|..+|..||+||++||..-+.|....+.+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 3557799999999999999999999999998765558999999999999999987777765554443
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.11 E-value=0.00024 Score=71.22 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=43.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCC--CCCCCChhhHHHHHHHHHHHHHHH
Q 016131 269 SHSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQQQ 318 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~--~~K~tdKAsIL~eAI~YIK~LQ~q 318 (394)
.-+-.||||=.-||-.|..||.|+|. ..|+ .||.||+.+.+||.+|+.+
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~ 113 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGH 113 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhc
Confidence 34667999999999999999999995 5676 8999999999999999854
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.96 E-value=0.0018 Score=63.68 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=46.3
Q ss_pred cchhhHHHHHHHHHHHHHHHcc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 016131 270 HSLAERVRREKISERMRLLQEL-VPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMK 325 (394)
Q Consensus 270 HslaERrRRekIner~~~Lq~L-VP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~ 325 (394)
-.+.||||=.|+||-|.+|+.= +++-+.---|..||..||+||..||.-++++...
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4578999999999999999753 4555544479999999999999999988887643
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.55 E-value=0.0021 Score=60.88 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=49.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHhH
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKL 326 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~ 326 (394)
.++..||.|=+.+|..|..||.+||.. .|+..|..+|..||.||++|+.-++.-+...
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 466779999999999999999999942 3445899999999999999999888776554
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.17 E-value=0.023 Score=60.51 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=45.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHccCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 016131 268 NSHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVEFL 322 (394)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~---~~K~tdKAsIL~eAI~YIK~LQ~qVe~L 322 (394)
...+..||.|=..|||-|++|-.+.-- ..|-.-|..||-.||.-|-.|++||.+-
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 368899999999999999999887642 2222259999999999999999999873
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=88.91 E-value=0.21 Score=46.43 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=42.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQ 317 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~ 317 (394)
.|++-||+|-..+|+-|..||.+||.. .|+ .|.--|.-|-.||-+|=+
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhh
Confidence 599999999999999999999999964 565 788889999999988854
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=85.15 E-value=0.62 Score=51.67 Aligned_cols=43 Identities=33% Similarity=0.367 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCCCCC---CChhhHHHHHHHHHHH
Q 016131 272 LAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQS 314 (394)
Q Consensus 272 laERrRRekIner~~~Lq~LVP~~~K~---tdKAsIL~eAI~YIK~ 314 (394)
-+.|.||.|-|+-|.+|..+||--..+ -|||+|+.-||-|++-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 458999999999999999999933221 3999999999999973
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=84.70 E-value=0.85 Score=49.62 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHccCC----CCCCCCChhhHHHHHHHHHH
Q 016131 274 ERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQ 313 (394)
Q Consensus 274 ERrRRekIner~~~Lq~LVP----~~~K~tdKAsIL~eAI~YIK 313 (394)
-+|-|+|+|-.+..|.+|+| .+.|+ ||.+||.-++-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHH
Confidence 35668999999999999999 46787 99999999999986
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=75.53 E-value=2.4 Score=45.02 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCCCC---CCChhhHHHHHHHHHHHHH
Q 016131 272 LAERVRREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQ 316 (394)
Q Consensus 272 laERrRRekIner~~~Lq~LVP~~~K---~tdKAsIL~eAI~YIK~LQ 316 (394)
-+.|.||++-|-.|..|..|+|-... ..||++|+.-|--|||--+
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 35799999999999999999995432 2499999999999998543
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=61.54 E-value=5.3 Score=39.24 Aligned_cols=47 Identities=26% Similarity=0.433 Sum_probs=40.0
Q ss_pred cchhhHHHHHHHHHHHHHHHccCCC---CCCCCChhhHHHHHHHHHHHHHH
Q 016131 270 HSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQ 317 (394)
Q Consensus 270 HslaERrRRekIner~~~Lq~LVP~---~~K~tdKAsIL~eAI~YIK~LQ~ 317 (394)
-+.-||.|=-.+|+-|..||.+||. ..|+ .|+-.|.-|-+||..|++
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 4567999999999999999999993 4555 689999999999998874
No 20
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=43.15 E-value=78 Score=31.41 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131 304 MLDEIINYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 304 IL~eAI~YIK~LQ~qVe~Le~~~~~~ 329 (394)
.=++||+-|-.||.++..|..+.+++
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999888765
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=43.11 E-value=34 Score=34.48 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=46.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCCCC--CCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcCCcc
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGCNK--ITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEL 333 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~~K--~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~p~~ 333 (394)
.-+..||+|=..+|.-|..|+.+||..+. +-.|-.-|+-|-.||--|=..+..=...++.-..++
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~~~~~~~~~~ 243 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMSGLEKSDVEL 243 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCccccCCcCCccc
Confidence 35788999999999999999999997543 125777888899999888766554333333333333
No 22
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=41.64 E-value=46 Score=28.39 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131 305 LDEIINYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 305 L~eAI~YIK~LQ~qVe~Le~~~~~~ 329 (394)
+.++-+-|+.|.+.|..|||+|++.
T Consensus 68 V~kTh~aIq~LdKtIS~LEMELAaA 92 (95)
T PF13334_consen 68 VSKTHEAIQSLDKTISSLEMELAAA 92 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777899999999999999865
No 23
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=40.00 E-value=15 Score=41.44 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=46.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHccCCCCCCC----CChhhHHHHHHHHHHHHHHHHHHHHH
Q 016131 268 NSHSLAERVRREKISERMRLLQELVPGCNKI----TGKAVMLDEIINYVQSLQQQVEFLSM 324 (394)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~~K~----tdKAsIL~eAI~YIK~LQ~qVe~Le~ 324 (394)
-.|+-+|.+||+.|.-.+..|-.++-...++ +-++.-|..+++||..++.+...+.+
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~ 713 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQE 713 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccch
Confidence 4799999999999999999999999865543 34667799999999988866555443
No 24
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=38.92 E-value=1.8e+02 Score=28.86 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhh
Q 016131 301 KAVMLDEIINYVQSLQQQVEFLSMKLAT 328 (394)
Q Consensus 301 KAsIL~eAI~YIK~LQ~qVe~Le~~~~~ 328 (394)
.+.|++.| ||.|+.||++||.++.+
T Consensus 49 ~vlvQE~A---L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 49 TVLVQEQA---LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 44445544 57899999999998865
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.81 E-value=69 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 016131 305 LDEIINYVQSLQQQVEFLSMKLATVNP 331 (394)
Q Consensus 305 L~eAI~YIK~LQ~qVe~Le~~~~~~~p 331 (394)
+..||+-|.-||..|++|.++...+..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 577999999999999999988775533
No 26
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=30.25 E-value=16 Score=41.23 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=49.0
Q ss_pred CccCCcchhhHHHHHHHHHHHHHHHccCCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHh
Q 016131 265 QATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 327 (394)
Q Consensus 265 ~a~~~HslaERrRRekIner~~~Lq~LVP~~----~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~ 327 (394)
.....|.-++|+||-.+-+++..|-+|.|.. .+++.+++||. +-|+.+|+.-+.+.++.+
T Consensus 786 ~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 786 MVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred eeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 3345788999999999999999999999954 44567999999 888999888877766544
No 27
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.13 E-value=2.1e+02 Score=33.40 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=12.9
Q ss_pred ChhhHHHHHHHHH--HHHHHHHHHHHHhH
Q 016131 300 GKAVMLDEIINYV--QSLQQQVEFLSMKL 326 (394)
Q Consensus 300 dKAsIL~eAI~YI--K~LQ~qVe~Le~~~ 326 (394)
|-+.++|..|+-- +.-+++..+|+.+.
T Consensus 455 d~~~liD~~vdkak~eeseqkA~e~~kk~ 483 (1102)
T KOG1924|consen 455 DLTELIDKMVDKAKAEESEQKAAELEKKF 483 (1102)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666543 23333444444333
No 28
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.65 E-value=1.3e+02 Score=34.90 Aligned_cols=10 Identities=0% Similarity=0.106 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 016131 307 EIINYVQSLQ 316 (394)
Q Consensus 307 eAI~YIK~LQ 316 (394)
+|.+|-|.+.
T Consensus 475 kA~e~~kk~~ 484 (1102)
T KOG1924|consen 475 KAAELEKKFD 484 (1102)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 29
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=26.60 E-value=52 Score=33.86 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131 275 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 275 RrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~ 329 (394)
|+|--|+-..-.+-|. |..+ .| +|||-|+.+|..||.+..++
T Consensus 290 rKRevRLmKNREAARE----CRRK-KK--------EYVKCLENRVAVLENQNKaL 331 (348)
T KOG3584|consen 290 RKREVRLMKNREAARE----CRRK-KK--------EYVKCLENRVAVLENQNKAL 331 (348)
T ss_pred hHHHHHHHhhHHHHHH----HHHh-Hh--------HHHHHHHhHHHHHhcccHHH
No 30
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.86 E-value=1.1e+02 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131 305 LDEIINYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 305 L~eAI~YIK~LQ~qVe~Le~~~~~~ 329 (394)
+..||+-|..||.+|+.|..+...+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5789999999999999999875544
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.43 E-value=1e+02 Score=25.96 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCc
Q 016131 305 LDEIINYVQSLQQQVEFLSMKLATVNPE 332 (394)
Q Consensus 305 L~eAI~YIK~LQ~qVe~Le~~~~~~~p~ 332 (394)
+..||+-|.-||.+|++|.++...+...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999987766543
No 32
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=24.25 E-value=55 Score=30.86 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHccCCCCC
Q 016131 273 AERVRREKISERMRLLQELVPGCN 296 (394)
Q Consensus 273 aERrRRekIner~~~Lq~LVP~~~ 296 (394)
.||.|..++++.+..|+.|+|+..
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgsp 52 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSP 52 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCC
Confidence 488999999999999999999764
No 33
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=24.15 E-value=1e+02 Score=29.09 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131 278 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 278 RekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~ 329 (394)
=+.|..++..|+..++...+ +.+.+..+=++||.+.+++.++++.+..+
T Consensus 113 L~e~snki~kLe~~~k~L~d---~Iv~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 113 LEEISNKIRKLETEVKKLKD---NIVTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred HHHHHHHHHHHHHHHHhHhh---hccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566678888888877765 47778888889999999998888876543
No 34
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=22.62 E-value=76 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 016131 302 AVMLDEIINYVQSLQQQVEFLSMKLATVNP 331 (394)
Q Consensus 302 AsIL~eAI~YIK~LQ~qVe~Le~~~~~~~p 331 (394)
....+.+-.||+.|.+++..++.+++.++-
T Consensus 15 v~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344677888999999999999999987753
No 35
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.91 E-value=1.8e+02 Score=22.47 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 016131 275 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 323 (394)
Q Consensus 275 RrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le 323 (394)
|.-|=.....+.++..|+=- .-.++|.+||+.+-.+++.++
T Consensus 17 R~~RHD~~NhLqvI~gllql--------g~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL--------GKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--------T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHH
Confidence 56676777778888877632 225788999999999888874
Done!