Query 016131
Match_columns 394
No_of_seqs 259 out of 941
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 8.7E-17 3E-21 137.6 7.1 85 256-340 17-110 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 6.1E-17 2.1E-21 130.3 4.2 64 267-330 7-70 (82)
3 1a0a_A BHLH, protein (phosphat 99.5 1.6E-15 5.4E-20 117.2 1.9 54 267-320 3-62 (63)
4 4h10_B Circadian locomoter out 99.5 4.2E-15 1.4E-19 117.9 3.8 57 267-323 9-65 (71)
5 1an4_A Protein (upstream stimu 99.5 3.6E-15 1.2E-19 114.5 2.6 55 266-320 5-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 4E-15 1.4E-19 118.3 0.7 52 265-317 8-63 (73)
7 1hlo_A Protein (transcription 99.5 4.4E-14 1.5E-18 112.7 6.0 61 268-329 14-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 6.4E-14 2.2E-18 112.2 6.3 62 268-330 4-67 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.8E-13 6E-18 111.8 6.3 60 269-329 9-71 (88)
10 3u5v_A Protein MAX, transcript 99.3 4.3E-13 1.5E-17 107.3 3.8 56 268-323 7-65 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 7E-12 2.4E-16 100.9 7.1 60 269-329 4-66 (80)
12 4f3l_A Mclock, circadian locom 98.9 7.8E-10 2.7E-14 107.0 6.1 52 266-318 12-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.1E-09 3.9E-14 85.8 4.5 51 269-320 15-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 2.9E-09 1E-13 81.5 5.1 52 269-320 5-58 (60)
15 4ath_A MITF, microphthalmia-as 98.8 4.3E-09 1.5E-13 85.8 5.9 64 277-340 3-75 (83)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.7E-09 5.8E-14 106.1 3.1 53 265-318 12-68 (387)
17 2lfh_A DNA-binding protein inh 98.3 1.7E-07 5.7E-12 74.0 2.7 46 271-317 19-67 (68)
18 4aya_A DNA-binding protein inh 97.7 8E-05 2.7E-09 62.3 6.5 49 274-322 33-83 (97)
19 2wt7_A Proto-oncogene protein 54.8 30 0.001 25.9 5.9 45 274-332 1-45 (63)
20 2er8_A Regulatory protein Leu3 47.5 13 0.00045 27.5 2.9 21 310-330 49-69 (72)
21 3coq_A Regulatory protein GAL4 45.7 15 0.00053 27.9 3.2 27 310-336 45-71 (89)
22 1zme_C Proline utilization tra 44.6 10 0.00034 27.8 1.9 21 310-330 44-64 (70)
23 2oqq_A Transcription factor HY 39.3 20 0.00068 25.8 2.6 25 310-334 3-27 (42)
24 1pyi_A Protein (pyrimidine pat 35.0 31 0.0011 26.7 3.4 23 309-331 47-69 (96)
25 1hwt_C Protein (heme activator 34.1 19 0.00066 27.0 2.0 21 309-329 57-77 (81)
26 2wuj_A Septum site-determining 33.0 46 0.0016 24.6 3.9 29 303-331 27-55 (57)
27 2jee_A YIIU; FTSZ, septum, coi 29.5 49 0.0017 26.7 3.7 27 305-331 15-41 (81)
28 1dh3_A Transcription factor CR 28.7 39 0.0013 24.9 2.8 20 310-329 22-41 (55)
29 3muj_A Transcription factor CO 24.4 85 0.0029 27.6 4.6 35 280-315 95-133 (138)
30 1xkm_B Distinctin chain B; por 24.1 80 0.0027 20.2 3.2 20 302-321 3-22 (26)
31 1gd2_E Transcription factor PA 24.1 51 0.0017 25.7 2.8 19 310-328 29-47 (70)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.66 E-value=8.7e-17 Score=137.63 Aligned_cols=85 Identities=28% Similarity=0.412 Sum_probs=51.0
Q ss_pred hhhhcccCCCccCCcchhhHHHHHHHHHHHHHHHccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHh------H
Q 016131 256 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEFLSMK------L 326 (394)
Q Consensus 256 ~~~~Rakr~~a~~~HslaERrRRekIner~~~Lq~LVP~~~K---~tdKAsIL~eAI~YIK~LQ~qVe~Le~~------~ 326 (394)
.....+++.+.+..|+++||+||++||++|..|++|||+|.+ +.+|++||++||+||++||.+++.|+.. +
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l 96 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKL 96 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888899999999999999999999999999864 2489999999999999999999999854 3
Q ss_pred hhcCCcccccHHHH
Q 016131 327 ATVNPELNLDIERI 340 (394)
Q Consensus 327 ~~~~p~~~~~~~~~ 340 (394)
+..+..+...++.|
T Consensus 97 ~~~n~~L~~riqeL 110 (118)
T 4ati_A 97 EHANRHLLLRVQEL 110 (118)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444445544
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.64 E-value=6.1e-17 Score=130.35 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=58.4
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131 267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN 330 (394)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~ 330 (394)
+..|+++||+||++||++|..|++|||++..+++|++||++||+||++||.+++.|+.+++.+.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999844469999999999999999999999999887654
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=1.6e-15 Score=117.20 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=47.9
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHccCCCCCCC------CChhhHHHHHHHHHHHHHHHHH
Q 016131 267 TNSHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVE 320 (394)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~------tdKAsIL~eAI~YIK~LQ~qVe 320 (394)
+.+|+++||+||++||+.|..|+.|||.+.+. ..||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999999999999999977432 3699999999999999998764
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=4.2e-15 Score=117.86 Aligned_cols=57 Identities=19% Similarity=0.415 Sum_probs=51.3
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 016131 267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 323 (394)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le 323 (394)
+.+|+++||+||++||++|..|+.|||++..+.||++||+.||+||+.||.++.-|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 348999999999999999999999999865335999999999999999999987664
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=3.6e-15 Score=114.50 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=49.1
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHccCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 016131 266 ATNSHSLAERVRREKISERMRLLQELVPGCNK-----ITGKAVMLDEIINYVQSLQQQVE 320 (394)
Q Consensus 266 a~~~HslaERrRRekIner~~~Lq~LVP~~~K-----~tdKAsIL~eAI~YIK~LQ~qVe 320 (394)
.+..|+++||+||++||+.|..|+.|||.|.. +.+|++||++||+||++||++++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999872 24999999999999999998753
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=4e-15 Score=118.27 Aligned_cols=52 Identities=31% Similarity=0.521 Sum_probs=47.1
Q ss_pred CccCCcchhhHHHHHHHHHHHHHHHccCCCC----CCCCChhhHHHHHHHHHHHHHH
Q 016131 265 QATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQ 317 (394)
Q Consensus 265 ~a~~~HslaERrRRekIner~~~Lq~LVP~~----~K~tdKAsIL~eAI~YIK~LQ~ 317 (394)
+++..|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 3455899999999999999999999999988 565 999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=4.4e-14 Score=112.73 Aligned_cols=61 Identities=25% Similarity=0.458 Sum_probs=56.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~ 329 (394)
..|+..||+||.+||+.|..|+.|||.+ .| .+|+.||..||+||+.||.+++.|+.+++.+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999987 46 4999999999999999999999999988765
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=6.4e-14 Score=112.20 Aligned_cols=62 Identities=24% Similarity=0.455 Sum_probs=56.6
Q ss_pred CCcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN 330 (394)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~ 330 (394)
..|+..||+||++||+.|..|+++||.+ .| .+|++||..||+||+.||.+++.|+.+++.+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999985 56 49999999999999999999999998877653
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.8e-13 Score=111.80 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=54.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~ 329 (394)
.|++.||+||++||++|..|+++||.+ .| .+|++||.+||+||++|+.+.+.|...++.+
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K-~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999986 36 4999999999999999999999888776543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.34 E-value=4.3e-13 Score=107.26 Aligned_cols=56 Identities=29% Similarity=0.379 Sum_probs=48.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 016131 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLS 323 (394)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le 323 (394)
..|+..||+||+.||++|..|+.+||.+ .|...|+.||..||+||++||++|++++
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999953 3432688999999999999999999874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.27 E-value=7e-12 Score=100.86 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=54.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~ 329 (394)
.|+..||+||..|++.|..|+++||.+ .| ..|++||..||+||+.||.+.+.|..+++.+
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999965 45 4799999999999999999999998877654
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.93 E-value=7.8e-10 Score=106.96 Aligned_cols=52 Identities=21% Similarity=0.470 Sum_probs=41.4
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHccCCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 016131 266 ATNSHSLAERVRREKISERMRLLQELVPG-CNKITGKAVMLDEIINYVQSLQQQ 318 (394)
Q Consensus 266 a~~~HslaERrRRekIner~~~Lq~LVP~-~~K~tdKAsIL~eAI~YIK~LQ~q 318 (394)
.+..|+++||+||++||+.|..|+.|||. ..|+ ||++||..||+|||.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence 34589999999999999999999999994 4565 9999999999999999864
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.88 E-value=1.1e-09 Score=85.80 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=46.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE 320 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe 320 (394)
.|+..||+|+..||+.|..|+.+||.. .| ..|+.||..||+||++||+.++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~K-lSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQR-LPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSC-CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHHHHHHHHHHHc
Confidence 699999999999999999999999964 45 4899999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.83 E-value=2.9e-09 Score=81.51 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=46.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHccCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 016131 269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQVE 320 (394)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~LVP~~~--K~tdKAsIL~eAI~YIK~LQ~qVe 320 (394)
.|+..||+|+..||+.|..|+.+||... ++..|..+|..||+||+.||+.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999653 334899999999999999998764
No 15
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.82 E-value=4.3e-09 Score=85.78 Aligned_cols=64 Identities=27% Similarity=0.439 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHH------HhHhhcCCcccccHHHH
Q 016131 277 RREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEFLS------MKLATVNPELNLDIERI 340 (394)
Q Consensus 277 RRekIner~~~Lq~LVP~~~K---~tdKAsIL~eAI~YIK~LQ~qVe~Le------~~~~~~~p~~~~~~~~~ 340 (394)
-|..||++|..|..|||.+.. ..+|++||..+|+||++||++++.+. .+++..|..+.+.+++|
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 489999999999999998743 14899999999999999998776555 34455666777777766
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.79 E-value=1.7e-09 Score=106.05 Aligned_cols=53 Identities=28% Similarity=0.423 Sum_probs=47.1
Q ss_pred CccCCcchhhHHHHHHHHHHHHHHHccCC----CCCCCCChhhHHHHHHHHHHHHHHH
Q 016131 265 QATNSHSLAERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQSLQQQ 318 (394)
Q Consensus 265 ~a~~~HslaERrRRekIner~~~Lq~LVP----~~~K~tdKAsIL~eAI~YIK~LQ~q 318 (394)
+++.+|+.+||+||+|||+.|..|+.||| ...|+ ||++||..||+|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 34558999999999999999999999999 45675 9999999999999999843
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.35 E-value=1.7e-07 Score=73.96 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=40.6
Q ss_pred chhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHH
Q 016131 271 SLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQ 317 (394)
Q Consensus 271 slaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~ 317 (394)
+--||+|+..||+.|..||.+||.. .|+ .|..+|.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 3558999999999999999999965 454 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.65 E-value=8e-05 Score=62.29 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 016131 274 ERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFL 322 (394)
Q Consensus 274 ERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe~L 322 (394)
||.|=..||+-|..||.+||.. +++-.|..+|.-||+||+.||..++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778888999999999999964 333489999999999999999888753
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.77 E-value=30 Score=25.93 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcCCc
Q 016131 274 ERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 332 (394)
Q Consensus 274 ERrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~p~ 332 (394)
||++|.+...++.+.+. . ..-.+|+..|+.+|+.|+.....+..+
T Consensus 1 Ekr~rrrerNR~AA~rc-----R---------~rKk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R---------NRRRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888776 1 122378888888888888776665443
No 20
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=47.49 E-value=13 Score=27.47 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHhhcC
Q 016131 310 NYVQSLQQQVEFLSMKLATVN 330 (394)
Q Consensus 310 ~YIK~LQ~qVe~Le~~~~~~~ 330 (394)
.||..|+.+|+.|+..++.+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887653
No 21
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=45.66 E-value=15 Score=27.89 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCccccc
Q 016131 310 NYVQSLQQQVEFLSMKLATVNPELNLD 336 (394)
Q Consensus 310 ~YIK~LQ~qVe~Le~~~~~~~p~~~~~ 336 (394)
.||..|+.+|+.||..+..+.+..+++
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~~~l~ 71 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPREDLD 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhhH
Confidence 699999999999999999888765543
No 22
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=44.65 E-value=10 Score=27.82 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhHhhcC
Q 016131 310 NYVQSLQQQVEFLSMKLATVN 330 (394)
Q Consensus 310 ~YIK~LQ~qVe~Le~~~~~~~ 330 (394)
.||..|+.+|+.|+..++.+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888877776553
No 23
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.33 E-value=20 Score=25.80 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCccc
Q 016131 310 NYVQSLQQQVEFLSMKLATVNPELN 334 (394)
Q Consensus 310 ~YIK~LQ~qVe~Le~~~~~~~p~~~ 334 (394)
-|+-.|+.+++.|+.+...++-++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999888887766554
No 24
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.03 E-value=31 Score=26.66 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCC
Q 016131 309 INYVQSLQQQVEFLSMKLATVNP 331 (394)
Q Consensus 309 I~YIK~LQ~qVe~Le~~~~~~~p 331 (394)
..||+.|+.+|+.||..+..+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998876543
No 25
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=34.14 E-value=19 Score=26.98 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhc
Q 016131 309 INYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 309 I~YIK~LQ~qVe~Le~~~~~~ 329 (394)
-.||..|+.+|+.||..+..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999887655
No 26
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=33.01 E-value=46 Score=24.57 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 016131 303 VMLDEIINYVQSLQQQVEFLSMKLATVNP 331 (394)
Q Consensus 303 sIL~eAI~YIK~LQ~qVe~Le~~~~~~~p 331 (394)
..|++.++-+..|.++++.|+.+++.++.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999887654
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.47 E-value=49 Score=26.70 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 016131 305 LDEIINYVQSLQQQVEFLSMKLATVNP 331 (394)
Q Consensus 305 L~eAI~YIK~LQ~qVe~Le~~~~~~~p 331 (394)
++.||+-|.-||.+|++|..+..++..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988876543
No 28
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.74 E-value=39 Score=24.87 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhHhhc
Q 016131 310 NYVQSLQQQVEFLSMKLATV 329 (394)
Q Consensus 310 ~YIK~LQ~qVe~Le~~~~~~ 329 (394)
.||..|+.+|..|+.+...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999988776654
No 29
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=24.39 E-value=85 Score=27.62 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=28.7
Q ss_pred HHHHHHHHHHccCCCC----CCCCChhhHHHHHHHHHHHH
Q 016131 280 KISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSL 315 (394)
Q Consensus 280 kIner~~~Lq~LVP~~----~K~tdKAsIL~eAI~YIK~L 315 (394)
-|.-.|..|+++||.- .++ -|-.||..|-+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 4778899999999943 344 6999999999998876
No 30
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=24.13 E-value=80 Score=20.22 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 016131 302 AVMLDEIINYVQSLQQQVEF 321 (394)
Q Consensus 302 AsIL~eAI~YIK~LQ~qVe~ 321 (394)
.+-|-||-.|+.+|+++++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 35678899999999988764
No 31
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.08 E-value=51 Score=25.66 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHhh
Q 016131 310 NYVQSLQQQVEFLSMKLAT 328 (394)
Q Consensus 310 ~YIK~LQ~qVe~Le~~~~~ 328 (394)
.||+.|+.+|..|+.....
T Consensus 29 ~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888888888765544
Done!