Citrus Sinensis ID: 016132

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----

MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA

cccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEcccccccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccc

cccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccccEEEEcccccEEEEEEEccccccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccHHccccccccEEEEEEcccccccccEEEcccccccccccccccccccEEHHHHHccccccccHHHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccc

myddiafneenprpgviinhphgddvykgvpkdytgedvtvENFFAVILGNktaltggsgkvvdsgpndhififysdhggpgvlgmptsryIYADELIDVLKKKHASGNYKSLVFYLEACesgsifegllpeglniyattasnaeesswgtycpgeipgpppeystclgdlysiawmedsdihnlrTETLHQQYELVKTRTAsynsygshvmqygdiglsknnlftylgtnpandnytfvdenslrpaskavnqrDADLLHFWDKyrkapegtprKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFgiekgpeilntvrpagqplvddwgCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQacenipsgpwssldkgfsa

MYDDIAFneenprpgviinhphgddvYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYrkapegtpRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQAcenipsgpwssldkgfsa

***************VIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDE************RDADLLHFWDKY****************FFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIG*****************************

MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTA********VDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNP*********************QRDADLLHFWDK*****************FFEAMSHRMHVDHSIKLIGKLLFGIE**************PLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSS****F**

MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKA**********QKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPW*********

MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNP*********ENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSG***********

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		394	2.2.26 [Sep-21-2011]
P49043		494	Vacuolar-processing enzym	no	no	1.0	0.797	0.992	0.0
O24325		484	Vacuolar-processing enzym	N/A	no	1.0	0.814	0.784	0.0
Q39119		494	Vacuolar-processing enzym	yes	no	1.0	0.797	0.782	0.0
P49044		493	Vacuolar-processing enzym	N/A	no	0.997	0.797	0.761	1e-180
P49047		478	Vacuolar-processing enzym	no	no	0.997	0.822	0.767	1e-178
P49042		497	Vacuolar-processing enzym	N/A	no	0.997	0.790	0.595	1e-142
P49045		495	Vacuolar-processing enzym	no	no	0.997	0.793	0.588	1e-141
P49046		475	Legumain OS=Canavalia ens	N/A	no	0.997	0.827	0.588	1e-138
Q39044		486	Vacuolar-processing enzym	no	no	0.949	0.769	0.598	1e-135
O24326		493	Vacuolar-processing enzym	N/A	no	0.997	0.797	0.583	1e-134

>sp\|P49043\|VPE_CITSI Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1	Back alignment and function desciption

 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/394 (99%), Positives = 392/394 (99%)

Query: 1   MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSG 60
           MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSG
Sbjct: 101 MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSG 160

Query: 61  KVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 120
           KVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC
Sbjct: 161 KVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 220

Query: 121 ESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDS 180
           ESGSIFEGLL EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDS
Sbjct: 221 ESGSIFEGLLLEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDS 280

Query: 181 DIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFV 240
           DIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFV
Sbjct: 281 DIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFV 340

Query: 241 DENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLI 300
           DENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLI
Sbjct: 341 DENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLI 400

Query: 301 GKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANIC 360
           GKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANIC
Sbjct: 401 GKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANIC 460

Query: 361 NTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 394
           NTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA
Sbjct: 461 NTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 494

Asparagine-specific endopeptidase that may be involved in processing of proteins targeted to vacuoles that accumulate during ethylene-regulated processes such as flower opening and flavedo degreening.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp\|O24325\|VPE1_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1	Back alignment and function description

>sp\|Q39119\|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2	Back alignment and function description

>sp\|P49044\|VPE_VICSA Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1	Back alignment and function description

>sp\|P49047\|VPEA_ARATH Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2	Back alignment and function description

>sp\|P49042\|VPE_RICCO Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|P49045\|VPE_SOYBN Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1	Back alignment and function description

>sp\|P49046\|LEGU_CANEN Legumain OS=Canavalia ensiformis PE=1 SV=1	Back alignment and function description

>sp\|Q39044\|VPEB_ARATH Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3	Back alignment and function description

>sp\|O24326\|VPE2_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
1351408		494	RecName: Full=Vacuolar-processing enzyme	1.0	0.797	0.992	0.0
224141591		489	predicted protein [Populus trichocarpa]	1.0	0.805	0.850	0.0
225429442		493	PREDICTED: vacuolar-processing enzyme [V	1.0	0.799	0.843	0.0
147799465		493	hypothetical protein VITISV_040193 [Viti	1.0	0.799	0.843	0.0
233142300		493	vacuolar processing enzyme a [Populus to	1.0	0.799	0.848	0.0
255550848		492	Vacuolar-processing enzyme precursor, pu	1.0	0.800	0.837	0.0
224088921		493	predicted protein [Populus trichocarpa]	1.0	0.799	0.853	0.0
237861979		494	vacuolar processing enzyme [Malus hupehe	1.0	0.797	0.830	0.0
356514571		484	PREDICTED: vacuolar-processing enzyme-li	1.0	0.814	0.837	0.0
34530959		483	unnamed protein product [Homo sapiens]	1.0	0.815	0.832	0.0

>gi\|1351408\|sp\|P49043.1\|VPE_CITSI RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|633185\|emb\|CAA87720.1\| cystein proteinase (by similarity) [Citrus sinensis] gi\|1588548\|prf\|\|2208463A vascular processing protease	Back alignment and taxonomy information

 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/394 (99%), Positives = 392/394 (99%)

Query: 1   MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSG 60
           MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSG
Sbjct: 101 MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSG 160

Query: 61  KVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 120
           KVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC
Sbjct: 161 KVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 220

Query: 121 ESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDS 180
           ESGSIFEGLL EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDS
Sbjct: 221 ESGSIFEGLLLEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDS 280

Query: 181 DIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFV 240
           DIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFV
Sbjct: 281 DIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFV 340

Query: 241 DENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLI 300
           DENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLI
Sbjct: 341 DENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLI 400

Query: 301 GKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANIC 360
           GKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANIC
Sbjct: 401 GKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANIC 460

Query: 361 NTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 394
           NTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA
Sbjct: 461 NTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 494

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224141591\|ref\|XP_002324151.1\| predicted protein [Populus trichocarpa] gi\|222865585\|gb\|EEF02716.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225429442\|ref\|XP_002276759.1\| PREDICTED: vacuolar-processing enzyme [Vitis vinifera] gi\|296081609\|emb\|CBI20614.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147799465\|emb\|CAN70603.1\| hypothetical protein VITISV_040193 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|233142300\|gb\|ACQ91103.1\| vacuolar processing enzyme a [Populus tomentosa]	Back alignment and taxonomy information

>gi\|255550848\|ref\|XP_002516472.1\| Vacuolar-processing enzyme precursor, putative [Ricinus communis] gi\|223544292\|gb\|EEF45813.1\| Vacuolar-processing enzyme precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224088921\|ref\|XP_002308580.1\| predicted protein [Populus trichocarpa] gi\|222854556\|gb\|EEE92103.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|237861979\|gb\|ACR24644.1\| vacuolar processing enzyme [Malus hupehensis var. mengshanensis]	Back alignment and taxonomy information

>gi\|356514571\|ref\|XP_003525979.1\| PREDICTED: vacuolar-processing enzyme-like [Glycine max]	Back alignment and taxonomy information

>gi\|34530959\|dbj\|BAC86022.1\| unnamed protein product [Homo sapiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
TAIR\|locus:2123782		494	GAMMA-VPE "gamma vacuolar proc	1.0	0.797	0.782	1.4e-176
TAIR\|locus:2043510		478	ALPHA-VPE "alpha-vacuolar proc	0.997	0.822	0.767	1.3e-169
TAIR\|locus:2026242		486	BETA-VPE "beta vacuolar proces	0.949	0.769	0.598	1.4e-126
TAIR\|locus:2087625		466	DELTA-VPE "delta vacuolar proc	0.954	0.806	0.522	1.9e-106
ZFIN\|ZDB-GENE-021030-1		438	lgmn "legumain" [Danio rerio (	0.890	0.801	0.371	1.3e-61
RGD\|619832		435	Lgmn "legumain" [Rattus norveg	0.545	0.494	0.513	2.9e-60
UNIPROTKB\|Q9R0J8		435	Lgmn "Legumain" [Rattus norveg	0.545	0.494	0.513	2.9e-60
UNIPROTKB\|E2QXF2		433	LGMN "Uncharacterized protein"	0.545	0.496	0.495	1.3e-59
MGI\|MGI:1330838		435	Lgmn "legumain" [Mus musculus	0.545	0.494	0.508	2e-59
UNIPROTKB\|Q86TV3		376	LGMN "Full-length cDNA clone C	0.545	0.571	0.495	3.8e-58

TAIR\|locus:2123782 GAMMA-VPE "gamma vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
 Identities = 309/395 (78%), Positives = 348/395 (88%)

Query:     1 MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSG 60
             MYDDIA N ENPRPG IIN PHG DVY+GVPKDYTG+DV V+N FAVILG+KTA+ GGSG
Sbjct:   100 MYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSG 159

Query:    61 KVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 120
             KVVDSGPNDHIFIFYSDHGGPGVLGMPTS Y+YA++L DVLKKKHA G YKSLVFYLEAC
Sbjct:   160 KVVDSGPNDHIFIFYSDHGGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEAC 219

Query:   121 ESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDS 180
             ESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGE P PPPEY TCLGDLYS+AWMEDS
Sbjct:   220 ESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEEPSPPPEYETCLGDLYSVAWMEDS 279

Query:   181 DIHNLRTETLHQQYELVKTRTASYN-SYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTF 239
              +HNL+TETLHQQYELVK RTA    SYGSHVMQYGD+G+SK+NL  Y+GTNPANDN+TF
Sbjct:   280 GMHNLQTETLHQQYELVKRRTAPVGYSYGSHVMQYGDVGISKDNLDLYMGTNPANDNFTF 339

Query:   240 VDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKL 299
              D NSL+P S+  NQRDADL+HFW+KYRKAPEG+ RK EAQKQ  EAMSHR+H+D+S+ L
Sbjct:   340 ADANSLKPPSRVTNQRDADLVHFWEKYRKAPEGSARKTEAQKQVLEAMSHRLHIDNSVIL 399

Query:   300 IGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANI 359
             +GK+LFGI +GPE+LN VR AGQPLVDDW CLK+ VR FE HCG+LSQYG+KHMRS ANI
Sbjct:   400 VGKILFGISRGPEVLNKVRSAGQPLVDDWNCLKNQVRAFERHCGSLSQYGIKHMRSFANI 459

Query:   360 CNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 394
             CN GI  E+M EA++QAC  +P+GPWSSL++GFSA
Sbjct:   460 CNAGIQMEQMEEAASQACTTLPTGPWSSLNRGFSA 494

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0000323 "lytic vacuole" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006624 "vacuolar protein processing" evidence=ISS

TAIR\|locus:2043510 ALPHA-VPE "alpha-vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026242 BETA-VPE "beta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087625 DELTA-VPE "delta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-021030-1 lgmn "legumain" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|619832 Lgmn "legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9R0J8 Lgmn "Legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXF2 LGMN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1330838 Lgmn "legumain" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TV3 LGMN "Full-length cDNA clone CS0DB001YK19 of Neuroblastoma of Homo sapiens (human)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49044	VPE_VICSA	3, ., 4, ., 2, 2, ., -	0.7613	0.9974	0.7971	N/A	no
P49047	VPEA_ARATH	3, ., 4, ., 2, 2, ., -	0.7670	0.9974	0.8221	no	no
P49046	LEGU_CANEN	3, ., 4, ., 2, 2, ., 3, 4	0.5883	0.9974	0.8273	N/A	no
Q9R0J8	LGMN_RAT	3, ., 4, ., 2, 2, ., 3, 4	0.3681	0.8984	0.8137	yes	no
P49043	VPE_CITSI	3, ., 4, ., 2, 2, ., -	0.9923	1.0	0.7975	no	no
O89017	LGMN_MOUSE	3, ., 4, ., 2, 2, ., 3, 4	0.3678	0.8908	0.8068	yes	no
Q39119	VPEG_ARATH	3, ., 4, ., 2, 2, ., -	0.7822	1.0	0.7975	yes	no
Q95M12	LGMN_BOVIN	3, ., 4, ., 2, 2, ., 3, 4	0.3659	0.8857	0.8060	yes	no
O24325	VPE1_PHAVU	3, ., 4, ., 2, 2, ., -	0.7848	1.0	0.8140	N/A	no
Q99538	LGMN_HUMAN	3, ., 4, ., 2, 2, ., 3, 4	0.3634	0.8857	0.8060	yes	no
Q5R5D9	LGMN_PONAB	3, ., 4, ., 2, 2, ., 3, 4	0.3603	0.8984	0.8175	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.921
3rd Layer	3.4.22.34	0.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVIII0730	hypothetical protein (489 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		394
pfam01650		258	pfam01650, Peptidase_C13, Peptidase C13 family	1e-126
COG5206		382	COG5206, GPI8, Glycosylphosphatidylinositol transa	8e-12

>gnl\|CDD\|216627 pfam01650, Peptidase_C13, Peptidase C13 family	Back alignment and domain information

 Score =  363 bits (934), Expect = e-126
 Identities = 145/230 (63%), Positives = 172/230 (74%), Gaps = 13/230 (5%)

Query: 1   MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSG 60
           MYDDIA N ENP PG I N P+G DVYKGVP DYTG DVT  NF AV+LG+K+AL G SG
Sbjct: 42  MYDDIANNPENPFPGKIFNKPNGTDVYKGVPIDYTGNDVTPRNFLAVLLGDKSALKG-SG 100

Query: 61  KVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 120
           KV+ SGPND++FI+++DHG PGVLG P   Y+YA +L + LKK HA G YK LVFY+EAC
Sbjct: 101 KVLKSGPNDNVFIYFTDHGAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYVEAC 160

Query: 121 ESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDS 180
           ESGS+FEG LP+ +NIYATTA+NA+ESSWGTYC      P PE  TCLGDL+S+ WMEDS
Sbjct: 161 ESGSMFEG-LPKDINIYATTAANADESSWGTYC------PDPEDGTCLGDLFSVNWMEDS 213

Query: 181 DIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGT 230
           D H+L  ETL QQ+ELVK RT      GSHVMQYGD  + +  +  + GT
Sbjct: 214 DDHDLSKETLEQQFELVKNRTT-----GSHVMQYGDKSIPQLPVSLFQGT 258

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258

>gnl\|CDD\|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		394
KOG1348		477	consensus Asparaginyl peptidases [Posttranslationa	100.0
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	100.0
KOG1349		309	consensus Gpi-anchor transamidase [Posttranslation	100.0
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	100.0
PF00656		248	Peptidase_C14: Caspase domain; InterPro: IPR011600	98.41
smart00115		241	CASc Caspase, interleukin-1 beta converting enzyme	96.37
cd00032		243	CASc Caspase, interleukin-1 beta converting enzyme	95.98
KOG1546		362	consensus Metacaspase involved in regulation of ap	94.85
PF14538		154	Raptor_N: Raptor N-terminal CASPase like domain	88.04
PF12770		287	CHAT: CHAT domain	85.21

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1e-132  Score=969.24  Aligned_cols=391  Identities=65%  Similarity=1.131  Sum_probs=380.2

Q ss_pred             CCcccCCCCCCCCCCeEeeCCCCCcccCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC
Q 016132            1 MYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG   80 (394)
Q Consensus         1 mydDia~~~~Np~pG~i~~~~~g~~vy~g~~iDY~g~~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~d~vFiY~t~HG~   80 (394)
                      ||||||+||+||+||+|||+|+|+|||+||++||+|++|||+||++||+|++++++|||||||+|+|||||||||+||||
T Consensus        87 MYDDIA~~~~NPrpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~  166 (477)
T KOG1348|consen   87 MYDDIANNEENPRPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGG  166 (477)
T ss_pred             EehhhhcCCCCCCCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeecccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCC
Q 016132           81 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGP  160 (394)
Q Consensus        81 ~g~l~fp~~~~l~a~dl~~~l~~m~~~~~y~~~v~~ieaC~SgSm~~~~l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~  160 (394)
                      ||+|.||+++.|+++||+++|++||+.++|++||||+|||||||||+++||+++||||+||||+.||||++|||+++|.|
T Consensus       167 pGvl~mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psp  246 (477)
T KOG1348|consen  167 PGVLGMPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSP  246 (477)
T ss_pred             CceEecCCCcchhHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCC
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccchhhhHhhhhhccccccCCCCcccHHHHHHHHHhhhccCCCCCCCceeecCCCcccccchhhcccCCCCCCcccc
Q 016132          161 PPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFV  240 (394)
Q Consensus       161 ~~~~~t~lgD~fs~~wme~~~~~~~~~~tl~~~f~~v~~~t~~~~t~~Shv~~yGd~~~~~~~~~~f~g~~~~~~~~~~~  240 (394)
                      +.++.|||||+||++||||||.+|+++|||.+||+.||++|+.....|||||||||..|++++|..|||.+|+++++++.
T Consensus       247 pse~~tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~  326 (477)
T KOG1348|consen  247 PSEYSTCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRTNTSYSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLP  326 (477)
T ss_pred             hhhcccccccceeeeeeccCccccchHHHHHHHHHHHHHhcCCCCCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCC
Confidence            99999999999999999999999999999999999999999998779999999999999999999999999999999886


Q ss_pred             CCCCCCccCccccCcchhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccCCC
Q 016132          241 DENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA  320 (394)
Q Consensus       241 ~~~~l~~~~~~v~sRDa~L~~L~~k~~~~~~~~~~k~~a~~eL~~~l~~R~~id~~v~~I~~ll~g~~~~~~~l~~~r~~  320 (394)
                       +.+..+++..||||||||++||+|++++++++.++.+++++|.++++||++||+++..|+.++||. ....+|+.+|+.
T Consensus       327 -~~s~~~~s~~~n~rD~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~  404 (477)
T KOG1348|consen  327 -ASSHKSPSGLTNQRDAPLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSE  404 (477)
T ss_pred             -ccCcCCccccCCCCCccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcC
Confidence             445556778999999999999999999999999999999999999999999999999999999988 344688889999


Q ss_pred             CCCCcCccchHHHHHHHHhhhcCCCchhhhhHHHHHHHHHccCCCHHHHHHHHHhhccCCCCCCCCCcccCCC
Q 016132          321 GQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFS  393 (394)
Q Consensus       321 g~plv~d~dCyk~~V~~Fe~~Cg~l~eY~lk~~~~laNLC~~G~~~~~i~~Ai~~~C~~~~~~~~~~~~~~~~  393 (394)
                      |+|+++||+|+|.+|++|++|||+++||||||||+|+||||.|++.++|.+|+.++|..+...+|+++.+|||
T Consensus       405 g~Plvddw~C~k~~v~~F~~hCg~~~~YglKh~~~~aN~Cn~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs  477 (477)
T KOG1348|consen  405 GQPLVDDWDCLKSAVRHFETHCGSTYEYGLKHMRVLANMCNKGVPLEQIELAMDQACLGIYTEPWSSLRRGFS  477 (477)
T ss_pred             CCCccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues	Back alignment and domain information

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)	Back alignment and domain information

>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14538 Raptor_N: Raptor N-terminal CASPase like domain	Back alignment and domain information

>PF12770 CHAT: CHAT domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		394
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 45/316 (14%), Positives = 81/316 (25%), Gaps = 121/316 (38%)

Query: 88  TSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIF-------EGLLPE-------- 132
           T+R+    + +      H S ++ S+    +  E  S+           LP         
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 133 GLNIYATTASNAEESSWGTY--------------CPGEIPGPPPEYSTCLGDL------- 171
            L+I A +  +   ++W  +                  +   P EY      L       
Sbjct: 329 RLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSA 385

Query: 172 ------YSIAWMEDSD--------------------------IHNLRTE---------TL 190
                  S+ W +                             I ++  E          L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 191 HQ----QYELVKTRTAS-----------YNSYGSHVMQYGDIGLSKNNLFT--YLGTNPA 233
           H+     Y + KT  +            Y+  G H+         +  LF   +L     
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFL----- 498

Query: 234 NDNYTFVDENSLRPASKAVNQRD--ADLLHFWDKYRK-------APEGTPRKAEAQKQFF 284
             ++ F+ E  +R  S A N      + L     Y+          E   R   A   F 
Sbjct: 499 --DFRFL-EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVNAILDFL 552

Query: 285 EAMSHRMHVDHSIKLI 300
             +   +       L+
Sbjct: 553 PKIEENLICSKYTDLL 568

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		394
3bij_A		285	Uncharacterized protein GSU0716; alpha-beta protei	99.07
4f6o_A		350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	98.46
4af8_A		367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	98.4
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	98.23
1m72_A		272	Caspase-1; caspase, cysteine protease, hydrolase-h	94.64
2j32_A		250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	94.25
3h11_B		271	Caspase-8; cell death, apoptosis, caspase, alterna	94.15
3sir_A		259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	93.86
2nn3_C		310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	93.45
4ehd_A		277	Caspase-3; caspase, apoptosis, allosteric inhibiti	93.25
3od5_A		278	Caspase-6; caspase domain, apoptotic protease, hyd	93.05
1f1j_A		305	Caspase-7 protease; caspase-7, cysteine protease,	92.64
1nw9_B		277	Caspase 9, apoptosis-related cysteine protease; XI	92.53
2fp3_A		316	Caspase NC; apoptosis, initiator caspase activatio	91.89
3e4c_A		302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	90.99
2h54_A		178	Caspase-1; allosteric site, dimer interface, hydro	88.54

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}	Back alignment and structure

Probab=99.07  E-value=2.2e-10  Score=110.83  Aligned_cols=147  Identities=15%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC-------------CccCCCCCCCCCHHHHHHHHH
Q 016132           36 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------------GVLGMPTSRYIYADELIDVLK  102 (394)
Q Consensus        36 g~~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~d~vFiY~t~HG~~-------------g~l~fp~~~~l~a~dl~~~l~  102 (394)
                      ..+.|.+++++.|..-          +-...++|.+||||+|||..             ++|...|+ .|..++|...|+
T Consensus        52 ~~~~t~~~i~~al~~l----------~~~~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~-~i~~~~l~~~l~  120 (285)
T 3bij_A           52 TKAATRAKVIDAIGKA----------AKALGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG-ELIDDELYALLG  120 (285)
T ss_dssp             GGGCCHHHHHHHHHHH----------HHHCCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS-EEEHHHHHHHHT
T ss_pred             CCccCHHHHHHHHHHH----------HHhCCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC-CccHHHHHHHHH
Confidence            3467899998888622          11346889999999999962             35555455 477889998887


Q ss_pred             HHHHcCCCceEEEeeecccccccccc----------------------cCC-----------------------------
Q 016132          103 KKHASGNYKSLVFYLEACESGSIFEG----------------------LLP-----------------------------  131 (394)
Q Consensus       103 ~m~~~~~y~~~v~~ieaC~SgSm~~~----------------------~l~-----------------------------  131 (394)
                      .|.   .-+++++++|+|+||++.+.                      .+|                             
T Consensus       121 ~l~---~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (285)
T 3bij_A          121 KFA---AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKTKKVDLAD  197 (285)
T ss_dssp             TSC---SSCEEEEEEECCCCCCHHHHHHTTC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTT
T ss_pred             hcc---CCCeEEEEEecCCCCccccccccccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhcccccccC
Confidence            662   35789999999999998762                      011                             


Q ss_pred             CCCcEEEEeecCCCCccccccCCCCCCCCCCCccchhhhHhhhhhccccccCCCCcccHHHHHHHHHhhhccCCCCCCCc
Q 016132          132 EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHV  211 (394)
Q Consensus       132 ~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~tl~~~f~~v~~~t~~~~t~~Shv  211 (394)
                      ...++++++|+.++|.||-.-          .-     -.|+.++++-.... ....|+.++++.|++++..    ..||
T Consensus       198 ~~~~~i~lsa~~~~q~A~e~~----------~~-----G~FT~aLl~~L~~~-~~~~s~~~l~~~v~~~~~~----~Q~P  257 (285)
T 3bij_A          198 VKASILLISGCQDNQLSQDGA----------FN-----GAFTGQLLRVWKNG-LYKGSYRSFHKAIVRRMPP----DQTP  257 (285)
T ss_dssp             CSSEEEEEESSCTTSCCEECS----------SS-----CHHHHHHHHHHGGG-TCCSCHHHHHHHHHHHSCT----TCCC
T ss_pred             CCCCEEEEEeCCCCccccccc----------cC-----CHHHHHHHHHHhhC-CCCcCHHHHHHHHHHhcCC----CCCc
Confidence            123689999999999998631          11     36888877643322 1346999999999987754    4889


Q ss_pred             eeecC
Q 016132          212 MQYGD  216 (394)
Q Consensus       212 ~~yGd  216 (394)
                      +.||.
T Consensus       258 ~~~~~  262 (285)
T 3bij_A          258 NFFTA  262 (285)
T ss_dssp             EEEEE
T ss_pred             ceeCC
Confidence            98885

PyMOL of 3bij

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}	Back alignment and structure

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B	Back alignment and structure

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A	Back alignment and structure

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*	Back alignment and structure

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A	Back alignment and structure

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}	Back alignment and structure

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A	Back alignment and structure

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*	Back alignment and structure

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*	Back alignment and structure

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A	Back alignment and structure

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}	Back alignment and structure

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}	Back alignment and structure

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		394
g1qtn.1		242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1nw9b_		277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	97.4
g1sc3.1		261	Interleukin-1beta converting enzyme (a cysteine pr	96.55
g1pyo.1		257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	96.53
g1nme.1		238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	95.66
d1m72a_		256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	95.65
d1f1ja_		245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	94.89

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00018  Score=65.55  Aligned_cols=142  Identities=17%  Similarity=0.240  Sum_probs=77.5

Q ss_pred             CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC-ccC------CCCCCCCCHHHHHHHHHHHH-HcCC
Q 016132           38 DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG-VLG------MPTSRYIYADELIDVLKKKH-ASGN  109 (394)
Q Consensus        38 ~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~d~vFiY~t~HG~~g-~l~------fp~~~~l~a~dl~~~l~~m~-~~~~  109 (394)
                      +.|.+.+.+.|.--.       .+  ...+.|.++|||+|||... .+.      -+++..+.-.++...+.... ..-+
T Consensus        67 nlt~~~~~~~l~~~~-------~~--~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~  137 (277)
T d1nw9b_          67 DLTAKKMVLALLELA-------RQ--DHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLG  137 (277)
T ss_dssp             SCCHHHHHHHHHHHH-------HS--CCTTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGT
T ss_pred             CCCHHHHHHHHHHhh-------hh--cccCCCEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhHHhhhhhcc
Confidence            466777766654211       01  1256799999999999652 121      23444455566655443211 1233


Q ss_pred             CceEEEeeecccccccccc--------------------------------------cCCCCCcEEEEeecCCCCccccc
Q 016132          110 YKSLVFYLEACESGSIFEG--------------------------------------LLPEGLNIYATTASNAEESSWGT  151 (394)
Q Consensus       110 y~~~v~~ieaC~SgSm~~~--------------------------------------~l~~~~nv~~~tAs~~~EsSy~~  151 (394)
                      =|..+|+++||+++.+-.+                                      .+|...++++.-|+.++..||-.
T Consensus       138 ~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~g~~a~~~  217 (277)
T d1nw9b_         138 GKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRD  217 (277)
T ss_dssp             TSCEEEEEEEEC---------------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTC
T ss_pred             cCcEEEEEecccCCcccccccccccCcccccccccccccccchhcccccccccccccccCCcccceEEEecccceEEecC
Confidence            3556899999999865332                                      12333477777777777666542


Q ss_pred             cCCCCCCCCCCCccchhhhHhhhhhccccccCCCCcccHHHHHHHHHhhhcc
Q 016132          152 YCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS  203 (394)
Q Consensus       152 ~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~tl~~~f~~v~~~t~~  203 (394)
                         +       ..+.    +|....++-... .....+|.+++..|.+++..
T Consensus       218 ---~-------~~gS----~f~~~L~~~l~~-~~~~~~l~~il~~V~~~V~~  254 (277)
T d1nw9b_         218 ---P-------KSGS----WYVETLDDIFEQ-WAHSEDLQSLLLRVANAVSV  254 (277)
T ss_dssp             ---T-------TSCB----HHHHHHHHHHHH-HTTTSCHHHHHHHHHHHHHT
T ss_pred             ---C-------CCCC----HHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHH
Confidence               1       2233    344443332221 12346799999999998865

PyMOL of d1nw9b_

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=95.65  E-value=0.0052  Score=55.53  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCccCCCCCCCCCHHHHHHHHHHHHH-cCCCceEEE
Q 016132           37 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHA-SGNYKSLVF  115 (394)
Q Consensus        37 ~~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~d~vFiY~t~HG~~g~l~fp~~~~l~a~dl~~~l~~m~~-~~~y~~~v~  115 (394)
                      .++|.+.+.++|.--.       .+ . -++.|-++|||.|||+.|+|.=-|. .+..+++...+..... .-+-|--+|
T Consensus        65 ~nlt~~~m~~~l~~~~-------~~-~-~~~~d~~vv~~~~HG~~~~i~~~D~-~~~~~~~~~~~~~~~~~~L~~KPKif  134 (256)
T d1m72a_          65 PNLKSEEINKFIQQTA-------EM-D-HSDADCLLVAVLTHGELGMLYAKDT-HYKPDNLWYYFTADKCPTLAGKPKLF  134 (256)
T ss_dssp             ESCCHHHHHHHHHHHH-------TS-C-CTTEEEEEEEEESCEETTEEECSSS-EECTTHHHHTTSTTTCGGGTTSCEEE
T ss_pred             eCCCHHHHHHHHHHHh-------hh-h-ccCCCeEEEEEeccCcCCEEEecCC-cccchHHhhhhhhhhhHHHcCCcEEE
Confidence            4677777777775211       01 1 1345789999999999987644444 3555555544422110 011122489


Q ss_pred             eeecccccccccc----------------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccchhhhHhhhhhccc
Q 016132          116 YLEACESGSIFEG----------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED  179 (394)
Q Consensus       116 ~ieaC~SgSm~~~----------------~l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~  179 (394)
                      +++||...-+-.+                .+|...++++.-|+.++.-||..-          ..++    +|.-.+++-
T Consensus       135 ~lqACRg~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lia~st~~g~~a~~~~----------~~gS----~fi~~L~~~  200 (256)
T d1m72a_         135 FIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRNT----------TRGS----WFMQALCEE  200 (256)
T ss_dssp             EEESCSSSBCBCCEEEEC---------CEEECTTCSEEEEESSCTTBCCEEET----------TTEE----HHHHHHHHH
T ss_pred             EEecCcCCcccCCccccccccccccccccccCCCCCeeEEEecccceeeccCC----------CCCC----HHHHHHHHH
Confidence            9999987543211                123334778888888777777531          2233    344444432


Q ss_pred             cccCCCCcccHHHHHHHHHhhhcc
Q 016132          180 SDIHNLRTETLHQQYELVKTRTAS  203 (394)
Q Consensus       180 ~~~~~~~~~tl~~~f~~v~~~t~~  203 (394)
                      ... ....+.|.+++..|.+++..
T Consensus       201 l~~-~~~~~~l~~il~~V~~~V~~  223 (256)
T d1m72a_         201 LRY-AGTERDILTLLTFVCQKVAL  223 (256)
T ss_dssp             HHH-HTTTSCHHHHHHHHHHHHHH
T ss_pred             HHH-hCCCCCHHHHHHHHHHHHHH
Confidence            221 23456799999999988854

PyMOL of d1m72a_

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.017  Score=51.46  Aligned_cols=142  Identities=13%  Similarity=0.154  Sum_probs=80.5

Q ss_pred             CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCccCCCCCCCCCHHHHHHHHHHHHHc-CCCceEEE
Q 016132           37 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHAS-GNYKSLVF  115 (394)
Q Consensus        37 ~~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~d~vFiY~t~HG~~g~l~fp~~~~l~a~dl~~~l~~m~~~-~~y~~~v~  115 (394)
                      .+.|.+.+.+.|.--.       .+ . -...|.++|||.|||..+.|.=.|. .+..+++...+..-.-. =+-|-.+|
T Consensus        55 ~nl~~~em~~~l~~~~-------~~-~-~~~~~~~vv~~~~HG~~~~i~g~d~-~~~v~~~~~~~~~~~~~~L~~kpKif  124 (245)
T d1f1ja_          55 NDCSCAKMQDLLKKAS-------EE-D-HTNAACFACILLSHGEENVIYGKDG-VTPIKDLTAHFRGDRSKTLLEKPKLF  124 (245)
T ss_dssp             ESCCHHHHHHHHHHHH-------HS-C-GGGEEEEEEEEESCEETTEEECSSS-EEEHHHHHHTTSTTTCGGGTTSCEEE
T ss_pred             cCCCHHHHHHHHHHHH-------HH-h-ccCCceEEEEEeeccccceEecCCC-cEEcchhhhhccchhhHHHhhcchhh
Confidence            3567777777766221       01 1 1235789999999999886554454 36666665554321110 11122478


Q ss_pred             eeeccccccccccc-----------------CCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccchhhhHhhhhhcc
Q 016132          116 YLEACESGSIFEGL-----------------LPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWME  178 (394)
Q Consensus       116 ~ieaC~SgSm~~~~-----------------l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme  178 (394)
                      +++||.++.+-.++                 +|...++++.-|+.++-.||-.-          .-|    -+|.-.+++
T Consensus       125 ~iqaCrg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~li~~st~~g~~a~~~~----------~~g----S~fi~~L~~  190 (245)
T d1f1ja_         125 FIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRSP----------GRG----SWFVQALCS  190 (245)
T ss_dssp             EEESCCSSBCBCCBC---------------CBCTTTTEEEEESSCTTBCCEEET----------TTE----EHHHHHHHH
T ss_pred             ehhhhcCcccccceeecCCCCCccccccccccCCCCCeEEEEecCCCceeccCC----------CCC----CHHHHHHHH
Confidence            89999987653221                 22223566666666665555431          122    244444443


Q ss_pred             ccccCCCCcccHHHHHHHHHhhhcc
Q 016132          179 DSDIHNLRTETLHQQYELVKTRTAS  203 (394)
Q Consensus       179 ~~~~~~~~~~tl~~~f~~v~~~t~~  203 (394)
                      -... ....+.|.+++..|.+++..
T Consensus       191 ~l~~-~~~~~~l~~il~~V~~~V~~  214 (245)
T d1f1ja_         191 ILEE-HGKDLEIMQILTRVNDRVAR  214 (245)
T ss_dssp             HHHH-HTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHH-hCCCCCHHHHHHHHHHHHHH
Confidence            3222 23456899999999988864

PyMOL of d1f1ja_