AmiGO: BLAST Results


BLAST match view associations BLAST with RecQl3 RecQl3 RecQl3 AT4G35740	protein from Arabidopsis thaliana	2.9e-142
BLAST match view associations BLAST with F1NWK5 F1NWK5 F1NWK5 Uncharacterized protein	protein from Gallus gallus	5.9e-70
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 RecQ protein-like 5	protein from Homo sapiens	2.4e-69
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	2.7e-69
BLAST match view associations BLAST with F1NT69 F1NT69 F1NT69 Uncharacterized protein	protein from Gallus gallus	4.9e-69
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Bos taurus	9.6e-69
BLAST match view associations BLAST with Recql5 Recql5 Recql5 RecQ protein-like 5	gene from Rattus norvegicus	1.3e-68
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Canis lupus familiaris	4.0e-68
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	1.5e-67
BLAST match view associations BLAST with him-6 him-6 him-6	gene from Caenorhabditis elegans	5.0e-65
BLAST match view associations BLAST with blm blm blm Bloom syndrome protein	gene from Dictyostelium discoideum	2.7e-64
BLAST match view associations BLAST with blm blm blm Bloom syndrome	gene_product from Danio rerio	1.9e-63
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Sus scrofa	2.4e-60
BLAST match view associations BLAST with RECQL2 RECQL2 RECQL2 RECQ helicase L2	protein from Arabidopsis thaliana	1.3e-59
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome helicase ortholog	protein from Drosophila melanogaster	1.4e-59
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Bos taurus	1.6e-59
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein	protein from Homo sapiens	3.2e-59
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein	protein from Homo sapiens	4.2e-59
BLAST match view associations BLAST with SGS1 SGS1 SGS1 Nucleolar DNA helicase of the RecQ family	gene from Saccharomyces cerevisiae	4.4e-59
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Canis lupus familiaris	8.6e-59
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Canis lupus familiaris	8.8e-59
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome, RecQ helicase-like	protein from Mus musculus	1.1e-58
BLAST match view associations BLAST with RECQ4A RECQ4A RECQ4A	protein from Arabidopsis thaliana	1.4e-58
BLAST match view associations BLAST with RecQ5 RecQ5 RecQ5 homolog of RecQ	protein from Drosophila melanogaster	5.2e-58
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	3.1e-57
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	5.4e-57
BLAST match view associations BLAST with blm blm blm Bloom syndrome protein homolog	protein from Xenopus laevis	6.7e-57
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	1.8e-56
BLAST match view associations BLAST with SGS1 SGS1 SGS1	gene_product from Candida albicans	8.9e-56
BLAST match view associations BLAST with SGS1 SGS1 SGS1 Putative uncharacterized protein SGS1	protein from Candida albicans SC5314	8.9e-56
BLAST match view associations BLAST with Recql Recql Recql RecQ protein-like (DNA helicase Q1-like)	gene from Rattus norvegicus	1.8e-55
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Gallus gallus	2.3e-55
BLAST match view associations BLAST with K02F3.12 K02F3.12 K02F3.12	gene from Caenorhabditis elegans	2.9e-55
BLAST match view associations BLAST with recql recql recql RecQ protein-like (DNA helicase Q1-like)	gene_product from Danio rerio	7.8e-55
BLAST match view associations BLAST with RECQI1 RECQI1 RECQI1 RECQ helicase l1	protein from Arabidopsis thaliana	9.9e-55
BLAST match view associations BLAST with DDB_G0272384 DDB_G0272384 DDB_G0272384 Bloom syndrome-like protein	gene from Dictyostelium discoideum	2.1e-54
BLAST match view associations BLAST with Recql Recql Recql RecQ protein-like	protein from Mus musculus	2.6e-54
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome, RecQ helicase-like	gene from Rattus norvegicus	1.9e-53
BLAST match view associations BLAST with RECQL RECQL RECQL RecQ protein-like (DNA helicase Q1-like)	protein from Bos taurus	8.0e-53
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Sus scrofa	8.0e-53
BLAST match view associations BLAST with CBU_0472 CBU_0472 CBU_0472 ATP-dependent DNA helicase RecQ	protein from Coxiella burnetii RSA 493	1.0e-52
BLAST match view associations BLAST with RECQL RECQL RECQL ATP-dependent DNA helicase Q1	protein from Homo sapiens	2.1e-52
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Canis lupus familiaris	4.4e-52
BLAST match view associations BLAST with GSU_0898 GSU_0898 GSU_0898 ATP-dependent DNA helicase RecQ	protein from Geobacter sulfurreducens PCA	7.2e-52
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome ATP-dependent helicase homolog	protein from Xenopus laevis	1.0e-51
BLAST match view associations BLAST with SO_4241 SO_4241 SO_4241 ATP-dependent DNA helicase RecQ	protein from Shewanella oneidensis MR-1	1.9e-51
BLAST match view associations BLAST with recQ recQ recQ	gene from Escherichia coli K-12	1.7e-50
BLAST match view associations BLAST with VC_0196 VC_0196 VC_0196 ATP-dependent DNA helicase RecQ	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.5e-49
BLAST match view associations BLAST with VC_0196 VC_0196 VC_0196 ATP-dependent DNA helicase RecQ	protein from Vibrio cholerae O1 biovar El Tor	2.5e-49
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	2.9e-48
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome protein	gene from Dictyostelium discoideum	2.9e-48
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	3.2e-48
BLAST match view associations BLAST with recQ recQ recQ Probable ATP-dependent DNA helicase RecQ	protein from Bacillus subtilis subsp. subtilis str. 168	4.7e-48
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	4.8e-48
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome	gene_product from Danio rerio	5.6e-48
BLAST match view associations BLAST with PF14_0278 PF14_0278 PF14_0278 ATP-dependent DNA helicase, putative	gene from Plasmodium falciparum	6.3e-48
BLAST match view associations BLAST with PF14_0278 PF14_0278 PF14_0278 ATP-dependent DNA helicase, putative	protein from Plasmodium falciparum 3D7	6.3e-48
BLAST match view associations BLAST with rcq-5 rcq-5 rcq-5	gene from Caenorhabditis elegans	1.4e-47
BLAST match view associations BLAST with F1NAR0 F1NAR0 F1NAR0 Uncharacterized protein	protein from Gallus gallus	1.6e-46
BLAST match view associations BLAST with BA_2818 BA_2818 BA_2818 ATP-dependent DNA helicase RecQ	protein from Bacillus anthracis str. Ames	1.8e-46
BLAST match view associations BLAST with WRN WRN WRN Werner syndrome ATP-dependent helicase	protein from Homo sapiens	2.2e-46
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Bos taurus	3.2e-45
BLAST match view associations BLAST with Wrn Wrn Wrn Werner syndrome homolog (human)	protein from Mus musculus	4.1e-45
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Sus scrofa	1.0e-43
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Sus scrofa	1.1e-43
BLAST match view associations BLAST with wrn-1 wrn-1 wrn-1	gene from Caenorhabditis elegans	3.6e-42
BLAST match view associations BLAST with SPO_0107 SPO_0107 SPO_0107 ATP-dependent DNA helicase RecQ	protein from Ruegeria pomeroyi DSS-3	2.0e-41
BLAST match view associations BLAST with BA_1505 BA_1505 BA_1505 ATP-dependent DNA helicase RecQ	protein from Bacillus anthracis str. Ames	3.2e-41
BLAST match view associations BLAST with Wrn Wrn Wrn Werner syndrome, RecQ helicase-like	gene from Rattus norvegicus	6.2e-41
BLAST match view associations BLAST with RECQSIM RECQSIM RECQSIM RECQ helicase SIM	protein from Arabidopsis thaliana	7.6e-39
BLAST match view associations BLAST with CPS_4237 CPS_4237 CPS_4237 RecQ domain protein	protein from Colwellia psychrerythraea 34H	2.2e-35
BLAST match view associations BLAST with CPS_4237 CPS_4237 CPS_4237 RecQ domain protein	protein from Colwellia psychrerythraea 34H	2.2e-35
BLAST match view associations BLAST with SO_2380 SO_2380 SO_2380 ATP-dependent DNA helicase RecQ family	protein from Shewanella oneidensis MR-1	1.2e-32
BLAST match view associations BLAST with SO_2380 SO_2380 SO_2380 RecQ domain protein	protein from Shewanella oneidensis MR-1	1.2e-32
BLAST match view associations BLAST with AT1G27880 AT1G27880 AT1G27880	protein from Arabidopsis thaliana	6.6e-32
BLAST match view associations BLAST with H9KZS5 H9KZS5 H9KZS5 Uncharacterized protein	protein from Gallus gallus	2.2e-28
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	6.4e-28
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Sus scrofa	2.2e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 ATP-dependent DNA helicase Q4	protein from Homo sapiens	5.0e-23
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	8.1e-23
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	8.2e-23
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	8.4e-23
BLAST match view associations BLAST with RTS RTS RTS RECQL4-helicase-like protein	protein from Xenopus laevis	1.1e-22
BLAST match view associations BLAST with recql4 recql4 recql4 RecQ4 protein	protein from Xenopus laevis	1.1e-22
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Sus scrofa	1.3e-22
BLAST match view associations BLAST with Recql4 Recql4 Recql4 RecQ protein-like 4	protein from Mus musculus	6.6e-22
BLAST match view associations BLAST with Recql4 Recql4 Recql4 RecQ protein-like 4	gene from Rattus norvegicus	6.6e-22
BLAST match view associations BLAST with RecQ4 RecQ4 RecQ4	protein from Drosophila melanogaster	2.9e-21
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 RECQL4 protein	protein from Bos taurus	3.7e-21
BLAST match view associations BLAST with CPS_2945 CPS_2945 CPS_2945 Putative DEAD/DEAH box helicase	protein from Colwellia psychrerythraea 34H	2.2e-18
BLAST match view associations BLAST with CPS_2945 CPS_2945 CPS_2945 putative DEAD/DEAH box helicase	protein from Colwellia psychrerythraea 34H	2.2e-18
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	8.8e-15
BLAST match view associations BLAST with eIF-4a eIF-4a eIF-4a Eukaryotic initiation factor 4a	protein from Drosophila melanogaster	2.4e-10
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016133
        (394 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37...  1391  2.9e-142  1
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein...   711  5.9e-70   1
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic...   703  2.4e-69   1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic...   703  2.7e-69   1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein...   700  4.9e-69   1
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein...   698  9.6e-69   1
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species...   696  1.3e-68   1
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein...   693  4.0e-68   1
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic...   686  1.5e-67   1
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd...   666  5.0e-65   1
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote...   665  2.7e-64   1
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec...   650  1.9e-63   2
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein...   618  2.4e-60   1
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase...   623  1.0e-59   1
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe...   611  1.3e-59   1
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth...   623  1.4e-59   1
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s...   622  1.6e-59   1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp...   618  3.2e-59   1
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp...   618  4.2e-59   1
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t...   618  4.4e-59   1
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s...   615  8.6e-59   1
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s...   615  8.8e-59   1
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica...   614  1.1e-58   1
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop...   611  1.4e-58   1
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7...   604  5.2e-58   1
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom...   598  3.1e-57   1
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom...   598  5.4e-57   1
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom...   597  6.7e-57   1
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom...   591  1.8e-56   1
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric...   588  8.0e-56   1
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica...   585  8.9e-56   1
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ...   585  8.9e-56   1
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica...   572  1.8e-55   1
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica...   572  1.8e-55   1
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"...   571  2.3e-55   1
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh...   570  2.9e-55   1
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik...   566  7.8e-55   1
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe...   565  9.9e-55   1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr...   531  2.1e-54   2
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species...   561  2.6e-54   1
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l...   561  1.9e-53   1
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"...   547  8.0e-53   1
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"...   547  8.0e-53   1
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he...   546  1.0e-52   1
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica...   543  2.1e-52   1
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"...   540  4.4e-52   1
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he...   538  7.2e-52   1
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend...   549  1.0e-51   1
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli...   534  1.9e-51   1
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia...   525  1.7e-50   1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli...   514  2.5e-49   1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli...   514  2.5e-49   1
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric...   288  1.0e-48   3
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s...   517  2.9e-48   1
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot...   478  2.9e-48   2
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s...   517  3.2e-48   1
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN...   502  4.7e-48   1
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s...   514  4.8e-48   1
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe...   337  5.6e-48   2
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe...   296  6.3e-48   2
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he...   296  6.3e-48   2
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd...   503  1.4e-47   1
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein...   500  1.6e-46   1
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli...   488  1.8e-46   1
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend...   499  2.2e-46   1
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s...   488  3.2e-45   1
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum...   487  4.1e-45   1
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s...   474  1.0e-43   1
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s...   474  1.1e-43   1
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd...   457  3.6e-42   1
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he...   443  2.0e-41   1
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli...   385  3.2e-41   2
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-...   448  6.2e-41   1
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s...   250  7.6e-39   2
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ...   389  2.2e-35   1
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"...   389  2.2e-35   1
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli...   363  1.2e-32   1
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s...   363  1.2e-32   1
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi...   360  6.6e-32   1
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein...   198  2.2e-28   3
UNIPROTKB|J3KSL7 - symbol:RECQL5 "ATP-dependent DNA helic...   312  6.4e-28   1
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s...   293  2.2e-25   1
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic...   279  5.0e-23   1
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein...   277  8.1e-23   1
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein...   277  8.2e-23   1
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein...   277  8.4e-23   1
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote...   186  1.1e-22   2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:...   186  1.1e-22   2
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s...   273  1.3e-22   1
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe...   273  6.6e-22   1
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species...   273  6.6e-22   1
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso...   195  2.9e-21   2
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species...   270  3.7e-21   1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo...   248  2.2e-18   1
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b...   248  2.2e-18   1
UNIPROTKB|J3KRM6 - symbol:RECQL5 "ATP-dependent DNA helic...   193  8.8e-15   1
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer...   219  1.3e-14   1
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica...   190  3.1e-11   1
POMBASE|SPAC212.11 - symbol:tlh1 "RecQ type DNA helicase"...   190  3.5e-11   1
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac...   173  2.4e-10   1

WARNING:  Descriptions of 316 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2127998 [details] [associations]
            symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
            thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0009378 "four-way junction helicase activity" evidence=IDA]
            [GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
            "3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
            GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
            HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
            IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
            UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
            PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
            KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
            InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
            ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
        Length = 713

 Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
 Identities = 264/382 (69%), Positives = 318/382 (83%)

Query:     3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 62
             VK KI+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDEAHCISSWGH
Sbjct:   114 VKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGH 173

Query:    63 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             DFRPSYR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL L+NPLVLKSSFNRPN+FYE
Sbjct:   174 DFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYE 233

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             VRYK           ++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN K
Sbjct:   234 VRYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSK 293

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              RS+VLDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQLP
Sbjct:   294 MRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLP 353

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKK 302
             S+S+LYYG+DDR++ME++L           + +  SSKK  SDF Q+V YCEGSGCRRKK
Sbjct:   354 SRSVLYYGVDDRKKMEYLLRNSE-------NKKSSSSKKPTSDFEQIVTYCEGSGCRRKK 406

Query:   303 ILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI-SSQDMTDGGQ 361
             ILESFGE+ PV  CK +CDACKHPN +A  L EL +   ++++ S+IFI SS + T+ GQ
Sbjct:   407 ILESFGEEFPVQQCKKTCDACKHPNQVAHCLEELMTTASRRHNSSRIFITSSNNKTNEGQ 466

Query:   362 YSEFWNRDDEASGSEEDISDCD 383
             YSEFWNR+++ S S E+ISD D
Sbjct:   467 YSEFWNRNEDGSNSNEEISDSD 488


>UNIPROTKB|F1NWK5 [details] [associations]
            symbol:F1NWK5 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
            evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
            Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
        Length = 1023

 Score = 711 (255.3 bits), Expect = 5.9e-70, P = 5.9e-70
 Identities = 159/401 (39%), Positives = 224/401 (55%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             Q K  I  DL S KP ++LLY+TPE+ A   F   L  + SR LL+ + IDEAHC+S WG
Sbjct:   112 QEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWG 171

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLF 120
             HDFRP Y +L +LR  +P+ P +ALTATA  +VQ D++ +L L+ PL   K+   R NLF
Sbjct:   172 HDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDIVTALKLKQPLATFKTPCFRSNLF 231

Query:   121 YEVRYKXXXX---XXXXXXC-SVLKANGDT-----CAIVYCLERTTCDELSAYLSAGGIS 171
             Y+V++K             C   L+    T     C IVYC  R  CD+L+  LS  G+ 
Sbjct:   232 YDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCGIVYCRMRDVCDQLAIELSYRGVK 291

Query:   172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 231
               AYHAGL    R+SV ++W+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +YQ
Sbjct:   292 AKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQ 351

Query:   232 ESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVD 291
             ESGRAGRD  PS   LYY  +DR ++ F++            T + S K  ++ F  +V 
Sbjct:   352 ESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKIQEKKGTLKESDKSVMTAFDAIVS 411

Query:   292 YCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI 351
             +CE  GCR   I + FG+  P   C   CD CK+P  + + L  L       N++S+  I
Sbjct:   412 FCEELGCRHAAIAKYFGDVTPP--CNKCCDYCKNPEAVKRQLEALERC---SNNWSKTCI 466

Query:   352 ----SSQDMTD-----GGQYS--EFWNRDDEASGSEEDISD 381
                 SS D  D     GG+     F   D+E+SG+ ++ ++
Sbjct:   467 GPTGSSWDSYDPELYEGGRRGCRGFSRYDEESSGNGDEANE 507


>UNIPROTKB|Q6P4G0 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
            IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
            ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
            STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
            ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
        Length = 964

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 154/391 (39%), Positives = 222/391 (56%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             Q + ++  DL+  KP  ++LY+TPE+ A+  F   L  + SR LL+ + +DEAHC+S WG
Sbjct:    80 QERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWG 139

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLF 120
             HDFRP Y +L +LR+ L   P +ALTATA P+VQ+DV  +L L+ P+ + K+   R NLF
Sbjct:   140 HDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLF 199

Query:   121 YEVRYKXXXXXXXXXXCSV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISC 172
             Y+V++K              LKA G         C IVYC  R  C++L+  LS  G++ 
Sbjct:   200 YDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNA 259

Query:   173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 232
              AYHAGL    R+ V +DW+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +YQE
Sbjct:   260 KAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQE 319

Query:   233 SGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDY 292
             SGRAGRD  PS   LYY  +DR ++ F++             +  S K +I  F  +V +
Sbjct:   320 SGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTF 378

Query:   293 CEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF--SQI 349
             CE  GCR   I + FG+ +P   C   CD C++P  + + L  L  S+   K     SQ 
Sbjct:   379 CEELGCRHAAIAKYFGDALPA--CAKGCDHCQNPTAVRRRLEALERSSSWSKTCIGPSQG 436

Query:   350 FISSQDMTDGGQ--YSEFWNRDDEASGSEED 378
                  ++ +GG+  Y +F +R DE SG   D
Sbjct:   437 NGFDPELYEGGRKGYGDF-SRYDEGSGGSGD 466


>UNIPROTKB|O94762 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
            evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
            "cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
            evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
            holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
            [GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
            GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
            EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
            EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
            RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
            UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
            DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
            PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
            Ensembl:ENST00000317905 Ensembl:ENST00000340830
            Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
            KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
            CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
            HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
            HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
            OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
            NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
            Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
            Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
        Length = 991

 Score = 703 (252.5 bits), Expect = 2.7e-69, P = 2.7e-69
 Identities = 154/391 (39%), Positives = 222/391 (56%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             Q + ++  DL+  KP  ++LY+TPE+ A+  F   L  + SR LL+ + +DEAHC+S WG
Sbjct:   107 QERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWG 166

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLF 120
             HDFRP Y +L +LR+ L   P +ALTATA P+VQ+DV  +L L+ P+ + K+   R NLF
Sbjct:   167 HDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLF 226

Query:   121 YEVRYKXXXXXXXXXXCSV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISC 172
             Y+V++K              LKA G         C IVYC  R  C++L+  LS  G++ 
Sbjct:   227 YDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNA 286

Query:   173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 232
              AYHAGL    R+ V +DW+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +YQE
Sbjct:   287 KAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQE 346

Query:   233 SGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDY 292
             SGRAGRD  PS   LYY  +DR ++ F++             +  S K +I  F  +V +
Sbjct:   347 SGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTF 405

Query:   293 CEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF--SQI 349
             CE  GCR   I + FG+ +P   C   CD C++P  + + L  L  S+   K     SQ 
Sbjct:   406 CEELGCRHAAIAKYFGDALPA--CAKGCDHCQNPTAVRRRLEALERSSSWSKTCIGPSQG 463

Query:   350 FISSQDMTDGGQ--YSEFWNRDDEASGSEED 378
                  ++ +GG+  Y +F +R DE SG   D
Sbjct:   464 NGFDPELYEGGRKGYGDF-SRYDEGSGGSGD 493


>UNIPROTKB|F1NT69 [details] [associations]
            symbol:F1NT69 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
            evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
            ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
            ArrayExpress:F1NT69 Uniprot:F1NT69
        Length = 451

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 144/342 (42%), Positives = 198/342 (57%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             Q K  I  DL S KP ++LLY+TPE+ A   F   L  + SR LL+ + IDEAHC+S WG
Sbjct:   112 QEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWG 171

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLF 120
             HDFRP Y +L +LR  +P+ P +ALTATA  +VQ D++ +L L+ PL   K+   R NLF
Sbjct:   172 HDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDIVTALKLKQPLATFKTPCFRSNLF 231

Query:   121 YEVRYKXXXX---XXXXXXC-SVLKANGDT-----CAIVYCLERTTCDELSAYLSAGGIS 171
             Y+V++K             C   L+    T     C IVYC  R  CD+L+  LS  G+ 
Sbjct:   232 YDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCGIVYCRMRDVCDQLAIELSYRGVK 291

Query:   172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 231
               AYHAGL    R+SV ++W+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +YQ
Sbjct:   292 AKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQ 351

Query:   232 ESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVD 291
             ESGRAGRD  PS   LYY  +DR ++ F++            T + S K  ++ F  +V 
Sbjct:   352 ESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKIQEKKGTLKESDKSVMTAFDAIVS 411

Query:   292 YCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYL 333
             +CE  GCR   I + FG+  P   C   CD CK+P  + + L
Sbjct:   412 FCEELGCRHAAIAKYFGDVTPP--CNKCCDYCKNPEAVKRQL 451


>UNIPROTKB|E1BKM5 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
            "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
            UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
            KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
        Length = 987

 Score = 698 (250.8 bits), Expect = 9.6e-69, P = 9.6e-69
 Identities = 154/396 (38%), Positives = 226/396 (57%)

Query:     1 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60
             +Q + ++  DL+  KP  +LLY+TPE+ A+  F   L  + SR LL+ + +DEAHC+S W
Sbjct:   105 VQERKELLSDLEQEKPQTKLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQW 164

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNL 119
             GHDFRP Y +L +LR+ L D P +ALTATA P+V++DV  +L L+ P+   K+   R NL
Sbjct:   165 GHDFRPDYLRLGALRSRLADAPCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANL 224

Query:   120 FYEVRYKXXXXXXXXXXCSV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGIS 171
             FY+V++K              LKA G         C I+YC  R  C++L+  LS  G++
Sbjct:   225 FYDVQFKELLPDPYGNLRDFCLKALGQKADKGLSGCGIIYCRTREACEQLATELSYRGVN 284

Query:   172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 231
               AYHAGL    R+ V ++W+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +YQ
Sbjct:   285 AKAYHAGLKAPERTLVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQ 344

Query:   232 ESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVD 291
             ESGRAGRD  PS   LYY   DR ++ F++             +  S K ++  F  +V 
Sbjct:   345 ESGRAGRDGKPSWCRLYYSRSDRDQVSFLIRKEVAKLQEKRGNKA-SDKAAVLAFDALVA 403

Query:   292 YCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI 351
             +CE SGCR   I + FG+  P   C   CD C++P  + K L     A+ Q++ +++  I
Sbjct:   404 FCEESGCRHAAIAKYFGDSPPA--CTKGCDCCQNPTGVRKQL----DALEQRSSWNKTCI 457

Query:   352 S-SQ------DMTDGGQ--YSEFWNRDDEASGSEED 378
               SQ      ++ +GG+  Y  F +R DE SG   D
Sbjct:   458 GPSQGNGYDPELYEGGRRGYGGF-SRYDEGSGGSGD 492


>RGD|1310823 [details] [associations]
            symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
            holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
            evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
            GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
            Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
            RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
            GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
        Length = 973

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 155/393 (39%), Positives = 222/393 (56%)

Query:     1 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60
             +Q + ++  DL+  KP  +LLY+TPE+ A+  F   L  + SR LL+ + +DEAHC+S W
Sbjct:   106 VQERKELLSDLERDKPRTKLLYITPEMAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQW 165

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNL 119
             GHDFRP Y +L +LR+ L   P +ALTATA P+VQ+DV  +L L+ P+   K+   R NL
Sbjct:   166 GHDFRPDYLRLGALRSRLAHAPCVALTATATPQVQEDVFAALHLKQPVASFKTPCFRANL 225

Query:   120 FYEVRYKXXXXXXXXXXCSV-LKA------NGDT--CAIVYCLERTTCDELSAYLSAGGI 170
             FY+V++K              LKA      NG +  C IVYC  R  C++L+  LS+ G+
Sbjct:   226 FYDVQFKELIPDVYGNLRDFCLKALGQKADNGSSSGCGIVYCRTREACEQLAIELSSRGV 285

Query:   171 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 230
             +  AYHAGL    R+ V ++W+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +Y
Sbjct:   286 NAKAYHAGLKASERTQVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYY 345

Query:   231 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMV 290
             QESGRAGRD  PS   LYY  +DR ++ F++             +  S K ++  F  +V
Sbjct:   346 QESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKELAKLQEKRGNKP-SDKATLLAFDALV 404

Query:   291 DYCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF--S 347
              +CE  GCR   I + FG+  P   C   CD C+ P  + K L  L  S+   K     S
Sbjct:   405 TFCEEVGCRHAAIAKYFGDAPPA--CAKGCDCCQSPAAIRKKLDALEHSSSWGKTCIGPS 462

Query:   348 QIFISSQDMTDGGQ--YSEFWNRDDEASGSEED 378
             Q      ++ +GG+  Y  F +R DE SG   D
Sbjct:   463 QGDGFDPELYEGGRRGYGGF-SRYDEGSGGSGD 494


>UNIPROTKB|F1PAG8 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
            Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
            Uniprot:F1PAG8
        Length = 989

 Score = 693 (249.0 bits), Expect = 4.0e-68, P = 4.0e-68
 Identities = 157/392 (40%), Positives = 218/392 (55%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             Q K ++  DL+  KP  +LLY+TPE+ A+P F   L  + SR LL+ + +DEAHC+S WG
Sbjct:   103 QEKKELLSDLEREKPQTKLLYITPEMAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWG 162

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLF 120
             HDFRP Y +L +LR+ L   P +ALTATA  +VQ+DV  +L L+ P+   K+   R NLF
Sbjct:   163 HDFRPDYLRLGTLRSRLAHAPCIALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLF 222

Query:   121 YEVRYKXXXXXXXXXXCSV-LKANGDT--------CAIVYCLERTTCDELSAYLSAGGIS 171
             Y+V++K              LKA G          C IVYC  R  C++L+  LS  G++
Sbjct:   223 YDVQFKELLSDPYGNLRDFCLKALGQKADKGLLSGCGIVYCRTREACEQLATELSYRGVN 282

Query:   172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 231
               AYHAGL    R+ V ++W+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +YQ
Sbjct:   283 AKAYHAGLKASERTLVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQ 342

Query:   232 ESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVD 291
             ESGRAGRD  PS   LYY  +DR ++ F++             +  S K +I  F  +V 
Sbjct:   343 ESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKAAILAFDALVT 401

Query:   292 YCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF--SQ 348
             +CE  GCR   I + FG+  P   C   CD C+ P  L K L  L  S+   K     SQ
Sbjct:   402 FCEELGCRHAAIAKYFGDAPPA--CTKGCDHCRDPAALRKRLDALEHSSSWNKTCIGPSQ 459

Query:   349 IFISSQDMTDGGQ--YSEFWNRDDEASGSEED 378
                   ++ +GG+  Y  F +R DE SG   D
Sbjct:   460 GNGFDPELYEGGRRGYGGF-SRYDEGSGGSGD 490


>UNIPROTKB|J3KTQ2 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
            Ensembl:ENST00000578201 Uniprot:J3KTQ2
        Length = 480

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 140/344 (40%), Positives = 201/344 (58%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             Q + ++  DL+  KP  ++LY+TPE+ A+  F   L  + SR LL+ + +DEAHC+S WG
Sbjct:   107 QERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWG 166

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLF 120
             HDFRP Y +L +LR+ L   P +ALTATA P+VQ+DV  +L L+ P+ + K+   R NLF
Sbjct:   167 HDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLF 226

Query:   121 YEVRYKXXXXXXXXXXCSV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISC 172
             Y+V++K              LKA G         C IVYC  R  C++L+  LS  G++ 
Sbjct:   227 YDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNA 286

Query:   173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 232
              AYHAGL    R+ V +DW+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +YQE
Sbjct:   287 KAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQE 346

Query:   233 SGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDY 292
             SGRAGRD  PS   LYY  +DR ++ F++             +  S K +I  F  +V +
Sbjct:   347 SGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTF 405

Query:   293 CEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGEL 336
             CE  GCR   I + FG+ +P   C   CD C++P  + + L  L
Sbjct:   406 CEELGCRHAAIAKYFGDALPA--CAKGCDHCQNPTAVRRRLEAL 447


>WB|WBGene00001865 [details] [associations]
            symbol:him-6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006260 "DNA replication"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0051307 "meiotic chromosome separation" evidence=IMP]
            [GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
            "chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
            evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
            "reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
            damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
            GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
            RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
            SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
            PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
            KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
            InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
            GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            Uniprot:O18017
        Length = 988

 Score = 666 (239.5 bits), Expect = 5.0e-65, P = 5.0e-65
 Identities = 147/326 (45%), Positives = 194/326 (59%)

Query:     6 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDF 64
             KIY +L SG PS++LLYVTPE  +  G ++ +   +H RGLL    IDEAHC+S WGHDF
Sbjct:   328 KIYAELGSGNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDF 387

Query:    65 RPSYRKLSSLRN-YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             RP Y KLSSLR  Y  P VPI+ALTATA PK+  D  + L +QN  +  SSF R NL Y+
Sbjct:   388 RPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYD 447

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             +  K                 G +  IVYCL R  C+ +   L+  G+S   YHAGLND 
Sbjct:   448 LIPKAARSLINVVEKMKQLYPGKS-GIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDN 506

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R SV   WI+++  V+ AT+AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD +P
Sbjct:   507 LRVSVQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMP 566

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             S  L+ Y   D  R+  ++           +T  RS    +++  Q+V YCE  S CRRK
Sbjct:   567 SYCLMLYSYHDSIRLRRMIEEGNT------TTGVRSMH--LNNVLQVVAYCENVSVCRRK 618

Query:   302 KILESFGEQIPVSLCKNS---CDACK 324
              ++E FGE      C+NS   CD C+
Sbjct:   619 MLVEHFGEVYDEQSCRNSKTPCDICE 644


>DICTYBASE|DDB_G0292130 [details] [associations]
            symbol:blm "Bloom syndrome protein" species:44689
            "Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
            EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
            InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
            Uniprot:Q54DM3
        Length = 1259

 Score = 665 (239.2 bits), Expect = 2.7e-64, P = 2.7e-64
 Identities = 136/319 (42%), Positives = 191/319 (59%)

Query:     7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             +Y+D+ S  P +RLLY+TPE +  +   +  L  +  +GL + + IDEAHC+S WGHDFR
Sbjct:   608 VYKDIRSNSPKIRLLYLTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFR 667

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y++LS LR   P VPILALTATA  +V+ DV+ +L ++NP+  K SFNRPNL Y+V  
Sbjct:   668 PDYKELSILRRKFPKVPILALTATATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVLK 727

Query:   126 KXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
             K            +     D   IVYC+ +  C+ ++  L    IS A YHAGL +  R+
Sbjct:   728 KTKQVVDDMSKF-IHSTYPDKSGIVYCISKYDCENVAKRLRELKISAAHYHAGLENDERA 786

Query:   186 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 245
              V  +W   R +V+VAT+AFGMGI++ DVR V H ++PKS+E +YQESGRAGRD   S  
Sbjct:   787 KVQANWQKGRIKVIVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHC 846

Query:   246 LLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKIL 304
             LLY+   D+ R + ++           S   R ++ S++   +MV+YCE  + CRR+  L
Sbjct:   847 LLYFSWADKLRNDLLIQNSFTSGQGS-SHNTRETRDSLN---KMVNYCENETDCRRQLQL 902

Query:   305 ESFGEQIPVSLCKNSCDAC 323
               FGE    S CK +CD C
Sbjct:   903 AYFGENFEKSGCKKTCDNC 921


>ZFIN|ZDB-GENE-070702-5 [details] [associations]
            symbol:blm "Bloom syndrome" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
            regulation of mitotic recombination" evidence=IMP] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
            EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
            EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
            EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
            EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
            EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
            IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
        Length = 1420

 Score = 650 (233.9 bits), Expect = 1.9e-63, Sum P(2) = 1.9e-63
 Identities = 143/330 (43%), Positives = 187/330 (56%)

Query:     6 KIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDF 64
             +IY  L    P+++LLY TPE     G M S L+ ++ RGLL  + IDEAHC+S WGHDF
Sbjct:   740 RIYMQLSRKDPAIKLLYATPEKVCASGRMISALQNLYERGLLARLVIDEAHCVSQWGHDF 799

Query:    65 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 124
             RP Y++L  LR   P+VPI+ALTATA P+VQKD++  L +  P V   SFNR NL Y V 
Sbjct:   800 RPDYKRLHELRRMFPNVPIMALTATATPRVQKDILNQLAMTRPQVFTMSFNRNNLKYSVL 859

Query:   125 YKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 184
              K            + K       IVYCL R  CD L+  L   GI+  AYHAGL+D  R
Sbjct:   860 PKKPKKVDEECIQWIKKYYPRDSGIVYCLSRNDCDTLADSLQRAGIAALAYHAGLSDSDR 919

Query:   185 SSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
               V + WI+    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   S
Sbjct:   920 EYVQNKWINQDGCQVMCATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEIS 979

Query:   244 KSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRKK 302
               +L+Y   D  R++ ++              ++S    I++   MV +CE  + CRR +
Sbjct:   980 HCVLFYSYSDVIRIKRLIAMDKDG-------NQQSKATHINNLHSMVHFCENVAECRRIQ 1032

Query:   303 ILESFGEQ-IPVSLCKNS----CDACKHPN 327
             +L  FGE     S CK      CD C  PN
Sbjct:  1033 LLAYFGEHTFNTSFCKEHPEVICDNCARPN 1062

 Score = 38 (18.4 bits), Expect = 1.9e-63, Sum P(2) = 1.9e-63
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query:   355 DMTDGGQYSEFWNRDDEASGSE 376
             D T G Q  E  N DD+  G +
Sbjct:  1295 DTTRGHQNDEDDNDDDDEGGGD 1316


>UNIPROTKB|I3LFW3 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
            "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
            Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
        Length = 432

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 128/305 (41%), Positives = 183/305 (60%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             Q + ++  DL+  KP  +LLY+TPE+ A+  F   LK + +R LL+ + +DEAHC+S WG
Sbjct:   103 QERKELLSDLEQEKPRTKLLYITPEMAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWG 162

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLF 120
             HDFRP Y +L +LR+ L   P +ALTATA  +VQ+DV  +L L+ P+   K+   R NLF
Sbjct:   163 HDFRPDYLRLGALRSRLAHAPCVALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLF 222

Query:   121 YEVRYKXXXXXXXXXXCSV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISC 172
             Y+V++K              LKA G         C IVYC  R  C++L+  LSA G++ 
Sbjct:   223 YDVQFKELLSDPYGNLRDFCLKALGQKADKGLSGCGIVYCRTREACEQLAIELSARGVNA 282

Query:   173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 232
              AYHAGL    R+ V ++W+  +  V+VAT++FGMG+D+ +VR V H+NI KSM  +YQE
Sbjct:   283 KAYHAGLKAAERTLVQNEWMEGKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQE 342

Query:   233 SGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDY 292
             SGRAGRD  PS   LYY  +DR ++ F++             +  S K ++S F  +V +
Sbjct:   343 SGRAGRDGRPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKAALSAFDALVAF 401

Query:   293 CEGSG 297
             CE SG
Sbjct:   402 CEESG 406


>POMBASE|SPAC2G11.12 [details] [associations]
            symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
            "Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
            evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=IGI] [GO:0000725
            "recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
            involved in replication" evidence=ISO] [GO:0006974 "response to DNA
            damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
            recombination" evidence=IMP] [GO:0009650 "UV protection"
            evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
            evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
            evidence=IDA] [GO:0034065 "replication fork processing at rDNA
            locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
            evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
            evidence=IC] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
            recombination intermediates" evidence=IMP] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
            GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
            RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
            EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
            OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
            GO:GO:0071140 Uniprot:Q09811
        Length = 1328

 Score = 623 (224.4 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 126/309 (40%), Positives = 186/309 (60%)

Query:    18 LRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
             ++LLYVTPE  A+ G +++ LK ++ R LL  + IDEAHC+S WGHDFRP Y++L  LR+
Sbjct:   616 VKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRD 675

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXX 136
                 +P +ALTATA   V+KD++ +L ++N L LKSSFNRPNLFYE++ K          
Sbjct:   676 RYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPKKDLYTELYRF 735

Query:   137 CSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSR 195
              S    +     I+YCL RT+C++++A L    G+    YHAGL    R  + ++W S  
Sbjct:   736 IS--NGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGS 793

Query:   196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255
              +++VAT+AFGMG+D+ DVR V H + PKS+E +YQE+GRAGRD  P+  +++Y   D  
Sbjct:   794 YKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHV 853

Query:   256 RMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVS 314
               + ++            T+ER  +       Q++ +CE  + CRRK++L  FGE     
Sbjct:   854 TFQKLIMSGDGDA----ETKERQRQM----LRQVIQFCENKTDCRRKQVLAYFGENFDKV 905

Query:   315 LCKNSCDAC 323
              C+  CD C
Sbjct:   906 HCRKGCDIC 914


>TAIR|locus:2197555 [details] [associations]
            symbol:RECQL2 "RECQ helicase L2" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
            repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
            [GO:0009378 "four-way junction helicase activity" evidence=IDA]
            [GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
            "mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
            evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
            GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
            EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
            RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
            ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
            PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
            KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
            OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
            Genevestigator:Q9FT73 Uniprot:Q9FT73
        Length = 705

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 134/322 (41%), Positives = 185/322 (57%)

Query:     7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             +Y+ L+ G+  L++LYVTPE ++ +  FMSKL+K H+ G L+L++IDEAHC S WGHDFR
Sbjct:   171 VYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFR 230

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+ LS L+   P VP++ALTATA  KVQ D++E L +   +   SS NRPNLFY VR 
Sbjct:   231 PDYKNLSILKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVRE 290

Query:   126 KXXXXXXXXXXCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             K           +       + +   IVYC  R  C++++  L   GIS   YHA ++  
Sbjct:   291 KSAVGKLVVDEIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDAN 350

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R  V   W  ++ QV+V TVAFGMGI++ DVR V H ++ KSME +YQESGRAGRD LP
Sbjct:   351 MREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLP 410

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             S+ +L++   D  R   ++              E S  +++ D   +V YC+  + CRR 
Sbjct:   411 SECILFFRSADVPRQSSMVFY------------EYSGLQNLYD---IVRYCQSKTKCRRS 455

Query:   302 KILESFGEQIPVSLCKNSCDAC 323
                  FGE  P   C   CD C
Sbjct:   456 AFFRHFGE--PSQDCNGMCDNC 475


>FB|FBgn0002906 [details] [associations]
            symbol:Blm "Bloom syndrome helicase ortholog" species:7227
            "Drosophila melanogaster" [GO:0006302 "double-strand break repair"
            evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
            evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
            [GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
            synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0045003 "double-strand break repair via synthesis-dependent
            strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
            evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
            [GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
            [GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
            evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IDA] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
            meiotic recombination" evidence=IMP] [GO:1901291 "negative
            regulation of double-strand break repair via single-strand
            annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
            InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
            UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
            MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
            EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
            CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
            OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
            NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
            GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
            Uniprot:Q9VGI8
        Length = 1487

 Score = 623 (224.4 bits), Expect = 1.4e-59, P = 1.4e-59
 Identities = 130/323 (40%), Positives = 185/323 (57%)

Query:     7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             IY DL+S  P ++LLYVTPE ++++  F   L  ++S   ++   IDEAHC+S WGHDFR
Sbjct:   819 IYRDLESQPPMVKLLYVTPEKISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFR 878

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+KL  L+   P+VP +ALTATA P+V+ D++  L L+N     SSFNR NL Y V  
Sbjct:   879 PDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLP 938

Query:   126 KXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
             K            +         I+YCL R  CDE S  +   G+   +YHAGL D  R 
Sbjct:   939 KKGVSTLDDISRYIRSKPQHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRE 998

Query:   186 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 245
             S   DW++ + +V+ ATVAFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD   +  
Sbjct:   999 SRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADC 1058

Query:   246 LLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKIL 304
             +LYY   D  R++ +L          ++ +    K  + +  ++V YCE  + CRR + L
Sbjct:  1059 ILYYNYSDMLRIKKMLDSDKALQ---YNVK----KIHVDNLYRIVGYCENLTDCRRAQQL 1111

Query:   305 ESFGEQIPVSLC----KNSCDAC 323
             + FGE      C    + +CD C
Sbjct:  1112 DYFGEHFTSEQCLENRETACDNC 1134


>UNIPROTKB|E1BQ04 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051782 "negative regulation of cell division" evidence=IEA]
            [GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0046641 "positive
            regulation of alpha-beta T cell proliferation" evidence=IEA]
            [GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
            [GO:0045950 "negative regulation of mitotic recombination"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0031297 "replication fork processing"
            evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
            "nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
            evidence=IEA] [GO:0009378 "four-way junction helicase activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005657 "replication fork"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
            binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
            "bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
            GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
            GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
            GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
            Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
        Length = 1417

 Score = 622 (224.0 bits), Expect = 1.6e-59, P = 1.6e-59
 Identities = 148/359 (41%), Positives = 198/359 (55%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             T IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHD
Sbjct:   747 TSIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHD 806

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FRP Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V
Sbjct:   807 FRPDYKRMNILRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYV 866

Query:   124 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
               K            + K +     I+YCL R  CD ++  L   G++  AYHAGL+D A
Sbjct:   867 LPKKPKKVAFDCLEWIRKHHPHDSGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSA 926

Query:   184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             R  V   WI+    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   
Sbjct:   927 RDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEI 986

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             S  +L+Y   D  R++ ++            TRE       ++   MV YCE  + CRR 
Sbjct:   987 SHCILFYTYHDVTRLKRLILMEKDGNRH---TRETH----FNNLYSMVHYCENITECRRI 1039

Query:   302 KILESFGE-QIPVSLCKN----SCDAC-KHPNLLAKYLGELTSAVLQKNHFSQIFISSQ 354
             ++L  FGE +     CK     SCD C K  +   K   ++T  V     F Q   SSQ
Sbjct:  1040 QLLAYFGENEFNPHFCKKYPDVSCDNCYKTKDFKTK---DVTEDVKNIVRFVQEHSSSQ 1095


>UNIPROTKB|H0YNU5 [details] [associations]
            symbol:BLM "Bloom syndrome protein" species:9606 "Homo
            sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
            ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
            Bgee:H0YNU5 Uniprot:H0YNU5
        Length = 1286

 Score = 618 (222.6 bits), Expect = 3.2e-59, P = 3.2e-59
 Identities = 148/361 (40%), Positives = 197/361 (54%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             T IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHD
Sbjct:   747 TNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHD 806

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FR  Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V
Sbjct:   807 FRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYV 866

Query:   124 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
               K            + K +     I+YCL R  CD ++  L   G++  AYHAGL+D A
Sbjct:   867 LPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSA 926

Query:   184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             R  V   WI+    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   
Sbjct:   927 RDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEI 986

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             S  LL+Y   D  R++ ++            TRE       ++   MV YCE  + CRR 
Sbjct:   987 SHCLLFYTYHDVTRLKRLIMMEKDGNHH---TRETH----FNNLYSMVHYCENITECRRI 1039

Query:   302 KILESFGEQ-IPVSLCKN----SCD-ACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQD 355
             ++L  FGE       CK     SCD  CK  +   +   ++T  V     F Q   SSQ 
Sbjct:  1040 QLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTR---DVTDDVKSIVRFVQEHSSSQG 1096

Query:   356 M 356
             M
Sbjct:  1097 M 1097


>UNIPROTKB|P54132 [details] [associations]
            symbol:BLM "Bloom syndrome protein" species:9606 "Homo
            sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
            "replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
            DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IEA] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=IEA] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
            "replication fork processing" evidence=IDA] [GO:0000781
            "chromosome, telomeric region" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
            [GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
            "lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
            evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
            [GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=IDA] [GO:0009378
            "four-way junction helicase activity" evidence=IDA] [GO:0000405
            "bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
            binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0051782 "negative regulation of cell division"
            evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
            evidence=NAS] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=NAS] [GO:0010165 "response to
            X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
            [GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
            "helicase activity" evidence=IDA] [GO:0045910 "negative regulation
            of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
            evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IMP] [GO:0000729 "DNA double-strand break processing"
            evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
            [GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
            GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
            Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
            GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
            GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
            EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
            RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
            PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
            IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
            DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
            GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
            GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
            MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
            InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
            EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
            PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
            Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
            GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
            GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
            GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
            Uniprot:P54132
        Length = 1417

 Score = 618 (222.6 bits), Expect = 4.2e-59, P = 4.2e-59
 Identities = 148/361 (40%), Positives = 197/361 (54%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             T IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHD
Sbjct:   747 TNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHD 806

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FR  Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V
Sbjct:   807 FRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYV 866

Query:   124 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
               K            + K +     I+YCL R  CD ++  L   G++  AYHAGL+D A
Sbjct:   867 LPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSA 926

Query:   184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             R  V   WI+    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   
Sbjct:   927 RDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEI 986

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             S  LL+Y   D  R++ ++            TRE       ++   MV YCE  + CRR 
Sbjct:   987 SHCLLFYTYHDVTRLKRLIMMEKDGNHH---TRETH----FNNLYSMVHYCENITECRRI 1039

Query:   302 KILESFGEQ-IPVSLCKN----SCD-ACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQD 355
             ++L  FGE       CK     SCD  CK  +   +   ++T  V     F Q   SSQ 
Sbjct:  1040 QLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTR---DVTDDVKSIVRFVQEHSSSQG 1096

Query:   356 M 356
             M
Sbjct:  1097 M 1097


>SGD|S000004802 [details] [associations]
            symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
            species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0000722 "telomere maintenance via
            recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
            formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
            DNA double-strand break processing" evidence=IGI] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0010520
            "regulation of reciprocal meiotic recombination" evidence=IGI]
            [GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
            [GO:0000724 "double-strand break repair via homologous
            recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
            mating-type locus, DNA double-strand break processing"
            evidence=IGI] [GO:0000729 "DNA double-strand break processing"
            evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
            [GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
            molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
            segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
            segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
            replication" evidence=IDA] [GO:0051276 "chromosome organization"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
            GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
            GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
            GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
            EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
            OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
            RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
            SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
            STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
            GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
            OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
            Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
            InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
        Length = 1447

 Score = 618 (222.6 bits), Expect = 4.4e-59, P = 4.4e-59
 Identities = 121/311 (38%), Positives = 187/311 (60%)

Query:    18 LRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
             L L+Y++PE+ +A+      + ++++ G L  + +DEAHC+S+WGHDFRP Y++L   + 
Sbjct:   773 LDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKR 832

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXX 136
               PD+P++ALTATA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV  K          
Sbjct:   833 EYPDIPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEI-- 890

Query:   137 CSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 195
             C  +K+   +   I+YC  + +C++ SA +   GI CA YHAG+    R SV   W +  
Sbjct:   891 CDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADE 950

Query:   196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255
              QV+ ATVAFGMGID+ DVR V HF +P+++E +YQE+GRAGRD   S  + Y+   D R
Sbjct:   951 IQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIR 1010

Query:   256 RMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVS 314
              M+ ++             RE + +K ++   Q++ YC+  + CRRK +L  F E     
Sbjct:  1011 TMQTMIQKDKNLD------RE-NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEDFDSK 1063

Query:   315 LCKNSCDACKH 325
             LC  +CD C++
Sbjct:  1064 LCHKNCDNCRN 1074


>UNIPROTKB|E2RS76 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
            evidence=IEA] [GO:0051782 "negative regulation of cell division"
            evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
            [GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
            "positive regulation of alpha-beta T cell proliferation"
            evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
            evidence=IEA] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0045120
            "pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
            [GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
            X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
            fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
            "p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
            "bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
        Length = 1407

 Score = 615 (221.5 bits), Expect = 8.6e-59, P = 8.6e-59
 Identities = 139/327 (42%), Positives = 184/327 (56%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             T IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHD
Sbjct:   736 TSIYLQLSKKDPIIKLLYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHD 795

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FR  Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V
Sbjct:   796 FRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYV 855

Query:   124 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
               K            + K +     I+YCL R  CD ++  L   G++  AYHAGL+D A
Sbjct:   856 LPKKPKKVAFDCLEWIRKYHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSA 915

Query:   184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             R  V   WI+    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   
Sbjct:   916 RDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEI 975

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             S  LL+Y   D  R++ ++            TRE       ++   MV YCE  + CRR 
Sbjct:   976 SHCLLFYTYHDVTRLKRLILMEKDGNRH---TRETH----FNNLYSMVHYCENITECRRI 1028

Query:   302 KILESFGEQ-IPVSLCKN----SCDAC 323
             ++L  FGE       CK     SCD C
Sbjct:  1029 QLLAYFGESGFNPDFCKKYPDVSCDNC 1055


>UNIPROTKB|J9PB86 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
            EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
            GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
        Length = 1420

 Score = 615 (221.5 bits), Expect = 8.8e-59, P = 8.8e-59
 Identities = 139/327 (42%), Positives = 184/327 (56%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             T IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHD
Sbjct:   749 TSIYLQLSKKDPIIKLLYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHD 808

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FR  Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V
Sbjct:   809 FRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYV 868

Query:   124 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
               K            + K +     I+YCL R  CD ++  L   G++  AYHAGL+D A
Sbjct:   869 LPKKPKKVAFDCLEWIRKYHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSA 928

Query:   184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             R  V   WI+    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   
Sbjct:   929 RDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEI 988

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             S  LL+Y   D  R++ ++            TRE       ++   MV YCE  + CRR 
Sbjct:   989 SHCLLFYTYHDVTRLKRLILMEKDGNRH---TRETH----FNNLYSMVHYCENITECRRI 1041

Query:   302 KILESFGEQ-IPVSLCKN----SCDAC 323
             ++L  FGE       CK     SCD C
Sbjct:  1042 QLLAYFGESGFNPDFCKKYPDVSCDNC 1068


>MGI|MGI:1328362 [details] [associations]
            symbol:Blm "Bloom syndrome, RecQ helicase-like"
            species:10090 "Mus musculus" [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
            "telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
            break processing" evidence=ISO] [GO:0000733 "DNA strand
            renaturation" evidence=ISO] [GO:0000800 "lateral element"
            evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
            [GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
            "replication fork" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
            "ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISO] [GO:0009378 "four-way junction
            helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
            evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
            [GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
            "replication fork processing" evidence=ISO] [GO:0036310 "annealing
            helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
            DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
            metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
            DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
            of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
            cell differentiation" evidence=IMP] [GO:0046641 "positive
            regulation of alpha-beta T cell proliferation" evidence=IMP]
            [GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
            "protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
            organization" evidence=IMP] [GO:0051782 "negative regulation of
            cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
            Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
            GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
            HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
            CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
            EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
            RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
            SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
            PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
            KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
            Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
            GermOnline:ENSMUSG00000030528 Uniprot:O88700
        Length = 1416

 Score = 614 (221.2 bits), Expect = 1.1e-58, P = 1.1e-58
 Identities = 137/325 (42%), Positives = 186/325 (57%)

Query:     7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHDFR
Sbjct:   757 IYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFR 816

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
               Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V  
Sbjct:   817 QDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLP 876

Query:   126 KXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
             K            + K +     I+YCL R  CD ++  L   G++  AYHAGL+D AR 
Sbjct:   877 KKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARD 936

Query:   186 SVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
              V   WI+    QV+ AT+AFGMGID+ DVR V H ++PKSME +YQESGRAGRD   S 
Sbjct:   937 EVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISH 996

Query:   245 SLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKI 303
              +L+Y   D  R++ ++          + T+E      +++   MV YCE  + CRR ++
Sbjct:   997 CVLFYTYHDVTRLKRLIMMEKDGN---YHTKETH----VNNLYSMVHYCENITECRRIQL 1049

Query:   304 LESFGEQ-IPVSLCKN----SCDAC 323
             L  FGE+      CK     SCD C
Sbjct:  1050 LAYFGEKGFNPDFCKKYPDVSCDNC 1074


>TAIR|locus:2197394 [details] [associations]
            symbol:RECQ4A species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
            recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
            response to cold" evidence=IEP] [GO:0071215 "cellular response to
            abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
            maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
            via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
            "response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
            "3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
            "chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
            GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
            EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
            RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
            SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
            EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
            TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
            PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
            Uniprot:Q8L840
        Length = 1188

 Score = 611 (220.1 bits), Expect = 1.4e-58, P = 1.4e-58
 Identities = 134/347 (38%), Positives = 196/347 (56%)

Query:     6 KIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 64
             KI+++L+S     +LLYVTPE  A +   +  L+ ++SRGLL    IDEAHC+S WGHDF
Sbjct:   534 KIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 593

Query:    65 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 124
             RP Y+ L  L+   P++P+LALTATA   V++DV+++L L N +V + SFNRPNL+Y V 
Sbjct:   594 RPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVV 653

Query:   125 YKXXXXXXXXXXCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
              K             +K N  D C I+YCL R  C+++S  L   G   A YH  +  + 
Sbjct:   654 PKTKKCLEDID--KFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQ 711

Query:   184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
             R+ +   W      ++ ATVAFGMGI++ DVR V H ++PKS+E ++QE GRAGRD   S
Sbjct:   712 RAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 771

Query:   244 KSLLYYGMDDRRRMEFILXXXXXXXXXXFS--TRERSSKKSIS----DFSQMVDYCEGS- 296
               +LYYG  D  R++ ++           +   R  SS + +     +  +MV YCE   
Sbjct:   772 SCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVASSGRLLETNTENLLRMVRYCENEV 831

Query:   297 GCRRKKILESFGEQIPVSLCKNSCD-ACKHPNLLAKYLGELTSAVLQ 342
              CRR   L   GE+   + CK +CD  C   +L+ K +  +T  +++
Sbjct:   832 ECRRFLQLVHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVE 878


>FB|FBgn0027375 [details] [associations]
            symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
            melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
            helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
            evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
            ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
            "GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
            mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
            evidence=IDA] [GO:0045002 "double-strand break repair via
            single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
            mitotic anaphase" evidence=IDA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
            TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
            FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
            PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
            Uniprot:Q9U5E0
        Length = 1058

 Score = 604 (217.7 bits), Expect = 5.2e-58, P = 5.2e-58
 Identities = 143/399 (35%), Positives = 207/399 (51%)

Query:     4 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             + ++  DL + + +L+ LY+TPE  AT  F   L+ +H    L   A+DEAHC+S WGHD
Sbjct:   101 RDRVIMDLKAVRTNLKFLYITPEQAATKFFQDLLQTLHKHNKLAYFAVDEAHCVSQWGHD 160

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFY 121
             FRP Y KL  LR+   DV  LALTATA+ +V++D+ + L L  P+   S  SF R NLFY
Sbjct:   161 FRPDYLKLGELRSKYSDVIWLALTATASREVKEDIYKQLRLHQPVAQFSTPSF-RKNLFY 219

Query:   122 EVRYKXXXXXXXXXXCSVLK---ANG----DT------CAIVYCLERTTCDELSAYLSAG 168
             ++ YK              +    N     DT      C IVYC  R   + ++  ++  
Sbjct:   220 DIVYKNSIEDDFQHLADFARHCLGNPKEFKDTPKPQRGCGIVYCRTRDQVERMAIGVTKQ 279

Query:   169 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 228
             GI   AYHAGL    R+ V + W+   + ++ AT +FGMG+D+  VR V H+++P+++ A
Sbjct:   280 GIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVRFVIHWDVPQNVAA 339

Query:   229 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQ 288
             +YQESGRAGRD L S   LYYG +D R + F+L             +E  ++++I  F +
Sbjct:   340 YYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDAHRARGR-GDKELLTERAIKQFEK 398

Query:   289 MVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQ 348
             + ++CE + CR K   + FG+  P   C   CD CK P    K L E+   +   + F  
Sbjct:   399 ITEFCERTTCRHKLFSDFFGDPTPD--CSGQCDVCKRPKKADKAL-EMFHRLCMDDAFKS 455

Query:   349 IFISSQDMTD---GGQYSEFWNRDDEASGSEEDISDCDG 384
               IS QD  D   GG+         E +G E    D  G
Sbjct:   456 -HISLQDCADLYEGGRPG-IKRAAQEYAGGESGSDDDSG 492


>UNIPROTKB|F1ND40 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0000079 "regulation of cyclin-dependent protein
            serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
            DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
            evidence=IEA] [GO:0000729 "DNA double-strand break processing"
            evidence=IEA] [GO:0000781 "chromosome, telomeric region"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
            "replication fork" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
            "four-way junction helicase activity" evidence=IEA] [GO:0010165
            "response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
            evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
            "replication fork processing" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045950 "negative regulation of mitotic recombination"
            evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
            evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
            proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
            evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
            [GO:0051782 "negative regulation of cell division" evidence=IEA]
            [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
            ArrayExpress:F1ND40 Uniprot:F1ND40
        Length = 1142

 Score = 598 (215.6 bits), Expect = 3.1e-57, P = 3.1e-57
 Identities = 141/371 (38%), Positives = 201/371 (54%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             +K Y  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHD
Sbjct:   477 SKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHD 536

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FR  Y++L+ LR     VP++ALTATA P+VQKD+   L +  P V   SFNR NL Y+V
Sbjct:   537 FRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDV 596

Query:   124 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
               K            + K +     I+YCL R  CD  +A L   G++  AYHAGL D  
Sbjct:   597 LPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSN 656

Query:   184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             R  V   W++    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   
Sbjct:   657 RDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEM 716

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGS-GCRRK 301
             S  LL+Y   D  R+  ++            TR+       ++   MV YCE    CRR 
Sbjct:   717 SHCLLFYSYSDVTRLRRLILMEKDGNSH---TRQTH----FNNLYSMVHYCENVVDCRRI 769

Query:   302 KILESFGE-QIPVSLCKNS----CDAC-KHPNLLAKYLGELTSAVLQ--KNHFSQIF-IS 352
             ++L  FGE     + CK+     CD C +  +  ++ + +   ++++  + H  Q+  I+
Sbjct:   770 QLLAYFGETDFNPNFCKDHPEVICDNCSRKKDYKSRNVTDEVKSIIRFVQQHCGQMGGIN 829

Query:   353 SQDMTDGGQYS 363
                 T  G+Y+
Sbjct:   830 GNRNTGSGRYT 840


>UNIPROTKB|F1P3V1 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
            "regulation of cyclin-dependent protein serine/threonine kinase
            activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
            cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005657 "replication fork"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
            activity" evidence=IEA] [GO:0010165 "response to X-ray"
            evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
            [GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
            mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=IEA] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0051259 "protein
            oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
            cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
            GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
            GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
            OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
        Length = 1380

 Score = 598 (215.6 bits), Expect = 5.4e-57, P = 5.4e-57
 Identities = 141/371 (38%), Positives = 201/371 (54%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             +K Y  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHD
Sbjct:   715 SKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHD 774

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FR  Y++L+ LR     VP++ALTATA P+VQKD+   L +  P V   SFNR NL Y+V
Sbjct:   775 FRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDV 834

Query:   124 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
               K            + K +     I+YCL R  CD  +A L   G++  AYHAGL D  
Sbjct:   835 LPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSN 894

Query:   184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             R  V   W++    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   
Sbjct:   895 RDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEM 954

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGS-GCRRK 301
             S  LL+Y   D  R+  ++            TR+       ++   MV YCE    CRR 
Sbjct:   955 SHCLLFYSYSDVTRLRRLILMEKDGNSH---TRQTH----FNNLYSMVHYCENVVDCRRI 1007

Query:   302 KILESFGE-QIPVSLCKNS----CDAC-KHPNLLAKYLGELTSAVLQ--KNHFSQIF-IS 352
             ++L  FGE     + CK+     CD C +  +  ++ + +   ++++  + H  Q+  I+
Sbjct:  1008 QLLAYFGETDFNPNFCKDHPEVICDNCSRKKDYKSRNVTDEVKSIIRFVQQHCGQMGGIN 1067

Query:   353 SQDMTDGGQYS 363
                 T  G+Y+
Sbjct:  1068 GNRNTGSGRYT 1078


>UNIPROTKB|Q9DEY9 [details] [associations]
            symbol:blm "Bloom syndrome protein homolog" species:8355
            "Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
            evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
            CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
            ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
            Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
        Length = 1364

 Score = 597 (215.2 bits), Expect = 6.7e-57, P = 6.7e-57
 Identities = 133/325 (40%), Positives = 180/325 (55%)

Query:     7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             IY  L    P ++LLYVTPE + A+   +S ++ ++ R LL    IDEAHC+S WGHDFR
Sbjct:   701 IYLQLSKKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFR 760

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y++L+ LR     VP++ALTATA P+V+KD++  L +  P +   SFNR NL YEV  
Sbjct:   761 PDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLP 820

Query:   126 KXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
             K            + K + +   I+YCL R  CD ++  L   G++  AYHAGL D  R 
Sbjct:   821 KKPKRVALDCVEWIKKHHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRD 880

Query:   186 SVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
              V   WI+    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   S 
Sbjct:   881 YVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSH 940

Query:   245 SLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKI 303
              LL+Y   D  R+  ++            T         ++   MV YCE    CRR ++
Sbjct:   941 CLLFYSYHDVTRIRRLIQMEKDGNSHTKQTH-------FNNLYSMVHYCENVVECRRMQL 993

Query:   304 LESFGEQ-IPVSLCKN----SCDAC 323
             L  FGE     + CK     +CD C
Sbjct:   994 LSYFGENNFNPNFCKEHTQVACDNC 1018


>UNIPROTKB|Q9I920 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
            double-strand break processing" evidence=ISS] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
            ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
            HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
            OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
        Length = 1142

 Score = 591 (213.1 bits), Expect = 1.8e-56, P = 1.8e-56
 Identities = 140/371 (37%), Positives = 199/371 (53%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             +K Y  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHD
Sbjct:   477 SKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHD 536

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FR  Y++L+ LR     VP++ALTATA P+VQKD+   L +  P V   SFNR NL Y+V
Sbjct:   537 FRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDV 596

Query:   124 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
               K            + K +     I+YCL R  CD  +A L   G++  AYHAGL D  
Sbjct:   597 LPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSN 656

Query:   184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             R  V   W++    QV+ AT+AFGMGID+ DVR V H ++PKS+E +Y ESGRAGRD   
Sbjct:   657 RDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEM 716

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGS-GCRRK 301
             S  LL+Y   D  R+  ++            TR+       ++   MV YCE    CRR 
Sbjct:   717 SHCLLFYSYSDVTRLRRLILMEKDGNSH---TRQTH----FNNLYSMVHYCENVVDCRRI 769

Query:   302 KILESFGE-QIPVSLCKNS----CDACK-HPNLLAKYLGELTSAVLQ--KNHFSQIF-IS 352
             ++L  FGE     + CK+     CD C    +  ++ + +   ++++  + H  Q+  I+
Sbjct:   770 QLLAYFGETDFNPNFCKDHPEVICDNCSTKKDYKSRNVTDEVKSIIRFVQQHCGQMGGIN 829

Query:   353 SQDMTDGGQYS 363
                 T  G+Y+
Sbjct:   830 GNRNTGSGRYT 840


>ASPGD|ASPL0000045206 [details] [associations]
            symbol:musN species:162425 "Emericella nidulans"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
            EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
            ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
            GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
            Uniprot:G5EB35
        Length = 1534

 Score = 588 (212.0 bits), Expect = 8.0e-56, P = 8.0e-56
 Identities = 129/324 (39%), Positives = 180/324 (55%)

Query:     7 IYEDLDSGKPS--LRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             I   L S  P   + LLY+TPE+ + +     +++K+ S   L  V IDEAHC+S WGHD
Sbjct:   786 IMSTLSSHNPETHIELLYITPEMISKSHALTDRIEKLCSIQKLARVVIDEAHCVSQWGHD 845

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
             FRP Y+++ + R  +P VP++ALTATA   V+ DV+ +L +Q   V   SFNRPNL YEV
Sbjct:   846 FRPDYKQIGAFRARIPGVPLMALTATATENVKVDVIHNLRMQGCEVFTQSFNRPNLTYEV 905

Query:   124 RYKXXXXXXXXXXCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLND 181
             R K             +K+   + C IVYCL R TC++++  L     I    YHAGL+ 
Sbjct:   906 RRKGKHAELLDSIADTIKSTYRNKCGIVYCLSRNTCEKVAEALRTNYSIKAEHYHAGLDA 965

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R+     W +    V+VAT+AFGMGID+ DVR V H +IPKS+E +YQE+GRAGRD  
Sbjct:   966 ETRARTQQRWQAGDVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGR 1025

Query:   242 PSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSG-CRR 300
              S   LY+   D   M+ ++             ++    + ++D   +V YCE +  CRR
Sbjct:  1026 RSGCYLYFSHRDVSTMQSMIEKNEDSD----DVQKGRQTRMLND---VVKYCENANDCRR 1078

Query:   301 KKILESFGEQIPVSLCKNSCDACK 324
              +IL  F E      C  SCD CK
Sbjct:  1079 VQILAYFSESFKRQDCNASCDNCK 1102


>CGD|CAL0004296 [details] [associations]
            symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] [GO:0001302
            "replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
            "filamentous growth of a population of unicellular organisms"
            evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
            evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
            processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
            replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
            segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
            checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
            mating-type locus, DNA double-strand break processing"
            evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
            evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
            molecule formation" evidence=IEA] [GO:0000724 "double-strand break
            repair via homologous recombination" evidence=IEA] [GO:0045132
            "meiotic chromosome segregation" evidence=IEA] [GO:0030447
            "filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
            GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
            EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
            RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
            GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
            KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
        Length = 1189

 Score = 585 (211.0 bits), Expect = 8.9e-56, P = 8.9e-56
 Identities = 118/312 (37%), Positives = 184/312 (58%)

Query:    18 LRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
             L ++Y++PE       M  +  K+++   L  V IDEAHC+SSWGHDFRP Y+ L   ++
Sbjct:   560 LDIVYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKD 619

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXX 136
               P VPI+ALTATA  KVQ D++ +L +++P++LK SFNR NLFYE++ K          
Sbjct:   620 KFPKVPIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKD 679

Query:   137 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 196
               + + +G +  I+YC  + +C+  S  L+  G+  + YHAG++   R ++   W  ++ 
Sbjct:   680 YILSRFSGKS-GIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKI 738

Query:   197 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 256
             QV+ AT+AFGMGID+ DVR V H  +P+++E +YQE+GRAGRD   S+ ++YY   D R 
Sbjct:   739 QVICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARS 798

Query:   257 MEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQIPVSL 315
             ++ ++           S RE      ++   Q++ YCE +  CRRK++L+ F E    + 
Sbjct:   799 LQNLIQRDEELSE---SGRE----SHLAKLRQVIQYCENTTDCRRKQVLQYFNETFDPAN 851

Query:   316 CKNSCDACKHPN 327
             C   CD C+  N
Sbjct:   852 CHKQCDNCRDYN 863


>UNIPROTKB|Q5A5R4 [details] [associations]
            symbol:SGS1 "Putative uncharacterized protein SGS1"
            species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
            cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
            stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
            evidence=IMP] [GO:0044182 "filamentous growth of a population of
            unicellular organisms" evidence=IMP] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
            GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
            EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
            RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
            GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
            KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
        Length = 1189

 Score = 585 (211.0 bits), Expect = 8.9e-56, P = 8.9e-56
 Identities = 118/312 (37%), Positives = 184/312 (58%)

Query:    18 LRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
             L ++Y++PE       M  +  K+++   L  V IDEAHC+SSWGHDFRP Y+ L   ++
Sbjct:   560 LDIVYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKD 619

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXX 136
               P VPI+ALTATA  KVQ D++ +L +++P++LK SFNR NLFYE++ K          
Sbjct:   620 KFPKVPIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKD 679

Query:   137 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 196
               + + +G +  I+YC  + +C+  S  L+  G+  + YHAG++   R ++   W  ++ 
Sbjct:   680 YILSRFSGKS-GIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKI 738

Query:   197 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 256
             QV+ AT+AFGMGID+ DVR V H  +P+++E +YQE+GRAGRD   S+ ++YY   D R 
Sbjct:   739 QVICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARS 798

Query:   257 MEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQIPVSL 315
             ++ ++           S RE      ++   Q++ YCE +  CRRK++L+ F E    + 
Sbjct:   799 LQNLIQRDEELSE---SGRE----SHLAKLRQVIQYCENTTDCRRKQVLQYFNETFDPAN 851

Query:   316 CKNSCDACKHPN 327
             C   CD C+  N
Sbjct:   852 CHKQCDNCRDYN 863


>RGD|1311071 [details] [associations]
            symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
            species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
            renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0015630 "microtubule cytoskeleton"
            evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
            EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
            UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
            STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
            KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
            Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
        Length = 621

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 129/342 (37%), Positives = 185/342 (54%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++ ++ +    L+L+YVTPE  A +  FMS+L+K +  G L  VA+DE HC S WGHDFR
Sbjct:   173 VHTEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFR 232

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+ L  L+   P++ ++ LTATA   V KD  + LC++  L   +SFNRPNL+YEVR 
Sbjct:   233 PDYKALGILKRQFPNISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQ 292

Query:   126 KXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             K           + L  NG       I+YC  +   ++++  L   G+    YHA +  +
Sbjct:   293 KPSSAEDFIENIANL-INGRYKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPE 351

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R+ V   W ++  QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD   
Sbjct:   352 DRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWR 411

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             +  +LYYG  D  R+  ++              E   ++ + +   MV YC+  S CRR 
Sbjct:   412 ADCILYYGFGDIFRISSMV------------VMENVGQQKLYE---MVSYCQNISKCRRA 456

Query:   302 KILESFGEQIPVSLCKNSCD-ACKHPNLLAKYLGELTSAVLQ 342
              I + F E      C   CD  CK  +   K + E   A+++
Sbjct:   457 LIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHCQALIK 498


>UNIPROTKB|Q6AYJ1 [details] [associations]
            symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
            EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
            UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
            STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
            KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
            Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
        Length = 621

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 129/342 (37%), Positives = 185/342 (54%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++ ++ +    L+L+YVTPE  A +  FMS+L+K +  G L  VA+DE HC S WGHDFR
Sbjct:   173 VHTEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFR 232

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+ L  L+   P++ ++ LTATA   V KD  + LC++  L   +SFNRPNL+YEVR 
Sbjct:   233 PDYKALGILKRQFPNISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQ 292

Query:   126 KXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             K           + L  NG       I+YC  +   ++++  L   G+    YHA +  +
Sbjct:   293 KPSSAEDFIENIANL-INGRYKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPE 351

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R+ V   W ++  QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD   
Sbjct:   352 DRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWR 411

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             +  +LYYG  D  R+  ++              E   ++ + +   MV YC+  S CRR 
Sbjct:   412 ADCILYYGFGDIFRISSMV------------VMENVGQQKLYE---MVSYCQNISKCRRA 456

Query:   302 KILESFGEQIPVSLCKNSCD-ACKHPNLLAKYLGELTSAVLQ 342
              I + F E      C   CD  CK  +   K + E   A+++
Sbjct:   457 LIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHCQALIK 498


>UNIPROTKB|F1NPI7 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
            evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
            cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
            GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
            Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
        Length = 661

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 135/341 (39%), Positives = 181/341 (53%)

Query:    18 LRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
             L+LLYVTPE  A +  FMSKL+K +  G L  +A+DE HC S WGHDFRP Y+ L  L+ 
Sbjct:   184 LKLLYVTPEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKR 243

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXX 136
               P  P++ LTATA   V KD    L +Q  +   +SFNRPNL+YEVR+K          
Sbjct:   244 QFPCAPLIGLTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKPSNNEDFIED 303

Query:   137 CSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193
                L  NG       IVYC  +   ++++  L   GI    YHA ++ K ++ V   W +
Sbjct:   304 IVKL-INGRYKGLSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWAA 362

Query:   194 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
             ++ QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD   +  +LYYG  D
Sbjct:   363 NQIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKADCILYYGFGD 422

Query:   254 RRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSG-CRRKKILESFGEQIP 312
               R+  ++              E   ++ + D   MV YC+    CRR  I   F E   
Sbjct:   423 IFRISSMV------------VMENVGQEKLYD---MVSYCQNMNKCRRVLIARHFDEVWE 467

Query:   313 VSLCKNSCDACKHPNLLAK-----YLGELTSAVLQKNHFSQ 348
              + C   CD C   N L K     Y  +L   + Q ++ S+
Sbjct:   468 SANCNRMCDNCCRENSLEKKDITGYYRDLIKILEQADNMSE 508


>WB|WBGene00019334 [details] [associations]
            symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
            RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
            ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
            GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
            WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
            NextBio:887386 Uniprot:Q9TXJ8
        Length = 631

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 137/330 (41%), Positives = 181/330 (54%)

Query:     4 KTKIYEDLDSGKPS-LRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             + K  ED  + K S  RLLYVTPE L  +   M+KL+K  S G L L+AIDE HC S WG
Sbjct:   187 EAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWG 246

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 121
             HDFR  Y  L+ L+     VPIL LTATA   V  DV + L +Q  L  ++ FNR NL Y
Sbjct:   247 HDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKY 306

Query:   122 EVRYKXXXXXX-XXXXCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG 178
             +V  K              +K +  G T  I+YCL R  C++++  L + GI    YHA 
Sbjct:   307 KVVQKPGSEDECTEEIAKTIKRDFAGQT-GIIYCLSRNDCEKVAKALKSHGIKAKHYHAY 365

Query:   179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             +    RS     WIS + QV+VATVAFGMGID+ +VR V H ++PKS+E +YQESGRAGR
Sbjct:   366 MEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGR 425

Query:   239 DQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYC-EGSG 297
             D  P+  +LYY + D  +   ++             +ER+    I +   MV Y  + S 
Sbjct:   426 DGQPATCILYYRLADIFKQSSMVQ------------QERTG---IQNLYNMVRYAADSST 470

Query:   298 CRRKKILESFGEQIPVSLCKNSCDACKHPN 327
             CRR K+ E F E    S C+  CD C++ N
Sbjct:   471 CRRVKLAEHFEEAWEPSWCQKQCDTCENGN 500


>ZFIN|ZDB-GENE-050809-134 [details] [associations]
            symbol:recql "RecQ protein-like (DNA helicase
            Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
            Uniprot:F1Q4T3
        Length = 640

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 126/318 (39%), Positives = 170/318 (53%)

Query:    12 DSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             D   P  +LLYVTPE  A     MSKL+K  + GLL  +A+DE HC S WGHDFRP Y+ 
Sbjct:   185 DKNSP-FKLLYVTPEKIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDYKL 243

Query:    71 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXX 130
             L  L+   P+VP++ LTATA   V KD  + LC+Q P+ L + FNRPNL+YEVR+K    
Sbjct:   244 LGILKRQFPNVPLIGLTATATSNVLKDCQKILCVQEPVTLTAPFNRPNLYYEVRFKDNED 303

Query:   131 XXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 190
                     +     +   IVY   +   + ++  L    I    YHA +    +S V   
Sbjct:   304 CTDQIASLIRGRYKNQSGIVYVFSQKDAEVVATELQKRDIVAQPYHANMEPSHKSLVHQR 363

Query:   191 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 250
             W S + QVVVATVAFGMGID+ DVR V H  I KS+E +YQESGRAGRD  P+  ++++G
Sbjct:   364 WSSKKIQVVVATVAFGMGIDKADVRFVIHHTISKSIENYYQESGRAGRDDSPADCIVFFG 423

Query:   251 MDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 309
               D  R+  ++              E + ++ + +   MV YC+    CRR  +   F E
Sbjct:   424 FMDIFRISTMV------------VMENTGQQKLHN---MVAYCQNVDRCRRAMMAIHFDE 468

Query:   310 QIPVSLCKNSCDACKHPN 327
                   C   CD C+H N
Sbjct:   469 VWNDEECNEMCDVCRHGN 486


>TAIR|locus:2074429 [details] [associations]
            symbol:RECQI1 "RECQ helicase l1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0042631 "cellular response to water deprivation" evidence=IEP]
            [GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
            "DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
            TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
            EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
            UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
            EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
            TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
            ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
        Length = 606

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 128/325 (39%), Positives = 183/325 (56%)

Query:     7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             + ++L    PS +LLYVTPE +  +  F+  L+ +  +GLL    +DEAHC+S WGHDFR
Sbjct:   289 VLQELRRDNPSCKLLYVTPEKIAGSSSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFR 348

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P YR+L  L+   P VP++ALTATA   V +DV++SL +    VLK SF+R NL YEV  
Sbjct:   349 PDYRELGCLKQNFPRVPVMALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIV 408

Query:   126 KXXXXXXXXXXCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKA 183
             K            +L+    D   IVYCL ++ C +++ +L+    +    YHAG+  K 
Sbjct:   409 KTKEPLKQLQ--ELLRDRFKDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQ 466

Query:   184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
             R  V   W +   ++V AT+AFGMGID+ DVR V H  + K++E++YQESGRAGRD L +
Sbjct:   467 RVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQA 526

Query:   244 KSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCE-GSGCRRKK 302
             + +  Y   D  R+  +L          F +    +KK       M  YCE  + CRR+ 
Sbjct:   527 QCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAMAQAKK-------MQQYCELKTECRRQM 579

Query:   303 ILESFGEQIPVSLCKNS---CDACK 324
             +LE FGE     +CK+S   CD C+
Sbjct:   580 LLEYFGESFDRMICKSSLNPCDNCE 604


>DICTYBASE|DDB_G0272384 [details] [associations]
            symbol:DDB_G0272384 "Bloom syndrome-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
            GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
            TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
            EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
            OMA:YQQTGRA Uniprot:Q55A06
        Length = 973

 Score = 531 (192.0 bits), Expect = 2.1e-54, Sum P(2) = 2.1e-54
 Identities = 105/258 (40%), Positives = 155/258 (60%)

Query:     7 IYEDLDSGKP-SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             + + L +G+   L+L+Y+TPE  A   F+  L +++ +G L  + +DEAHCIS WGH FR
Sbjct:   561 VLDQLLNGETCKLKLIYITPERLAQSEFLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFR 620

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P YR +S+ R+  P VPI A TA+A P V+ D+  SL + NP+ + SSF RPNL Y+VR 
Sbjct:   621 PKYRLISTFRDRFPSVPISAFTASATPNVEIDIKNSLKMVNPITINSSFLRPNLLYQVRQ 680

Query:   126 KXXXXXXXXXXCS--VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
             K              +     ++  I+YC     C+ ++ YLS  G+S   YHA L++  
Sbjct:   681 KQSDEESLLKDIYNFISFKYPNSTGIIYCATVRECEIVADYLSERGLSSNFYHAKLSNTQ 740

Query:   184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
             RS +  DW +   ++V  T+AFGMGID+ D R V H ++P+SME++YQ++GRAGRD   S
Sbjct:   741 RSKLQKDWTNGEFKIVCTTIAFGMGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHS 800

Query:   244 KSLLYYGMDDRRRMEFIL 261
               LL+Y   D  R + I+
Sbjct:   801 DCLLFYNKSDLMRFKHII 818

 Score = 65 (27.9 bits), Expect = 2.1e-54, Sum P(2) = 2.1e-54
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query:   275 RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDAC 323
             ++ S+K  + D   +  +C   S CRR  +L  FGE      C N CD C
Sbjct:   874 QQTSTKLEMLD--SVASFCSTQSKCRRVTLLNYFGENS--KSCGNMCDIC 919


>MGI|MGI:103021 [details] [associations]
            symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
            strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
            unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
            GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
            HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
            EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
            IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
            UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
            PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
            Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
            KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
            Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
            GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
        Length = 648

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 126/322 (39%), Positives = 173/322 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++ ++ +    L+L+YVTPE  A +  FMS+L+K +  G L   A+DE HC S WGHDFR
Sbjct:   173 VHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFR 232

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+ L  L+   P+  ++ LTATA   V KDV + LC+   L   +SFNRPNLFYEVR 
Sbjct:   233 PDYKALGILKRQFPNASLMGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQ 292

Query:   126 KXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             K             L  NG       I+YC  +   ++++  L   GI    YHA +  +
Sbjct:   293 KPSSAEDFTEDIVKL-INGRYKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPE 351

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              ++ V   W ++  QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD   
Sbjct:   352 DKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSR 411

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             +  +LYYG  D  R+  ++              E   ++ + +   MV YC+  S CRR 
Sbjct:   412 ADCILYYGFGDIFRISSMV------------VMENVGQQKLYE---MVSYCQNVSKCRRV 456

Query:   302 KILESFGEQIPVSLCKNSCDAC 323
              I + F E      C   CD C
Sbjct:   457 LIAQHFDEVWNADACNKMCDNC 478


>RGD|1308810 [details] [associations]
            symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
            "Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
            protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
            "bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
            maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
            processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
            evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
            [GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
            binding" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=ISO] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
            "helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
            fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
            process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009378 "four-way junction helicase activity"
            evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
            [GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
            evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
            "annealing helicase activity" evidence=ISO] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
            [GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045910 "negative regulation of DNA recombination"
            evidence=ISO] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=ISO] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
            "regulation of binding" evidence=ISO] [GO:0051259 "protein
            oligomerization" evidence=ISO] [GO:0051276 "chromosome
            organization" evidence=ISO] [GO:0051782 "negative regulation of
            cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] [GO:0000781 "chromosome, telomeric region"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
            UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
        Length = 999

 Score = 561 (202.5 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 116/257 (45%), Positives = 157/257 (61%)

Query:     7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHDFR
Sbjct:   740 IYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFR 799

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
               Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V  
Sbjct:   800 QDYKRMNMLRQRFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLP 859

Query:   126 KXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
             K            + K +     I+YCL R  CD ++  L   G++  AYHAGL+D AR 
Sbjct:   860 KKPKKVALDCLEWIRKHHPYDSGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARD 919

Query:   186 SVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
              V   WI+    QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD   S 
Sbjct:   920 EVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISH 979

Query:   245 SLLYYGMDDRRRMEFIL 261
              +L+Y   D  R++ ++
Sbjct:   980 CVLFYTYHDVTRLKRLI 996


>UNIPROTKB|A0JN36 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
            activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
            HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
            EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
            RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
            Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
            InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
        Length = 649

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 121/322 (37%), Positives = 173/322 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++ ++ +    L+L+YVTPE  A +  FMS+L+K +       +A+DE HC S WGHDFR
Sbjct:   173 VHAEMVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFR 232

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+ L  L+   P+  ++ LTATA   V KD  + LC++      +SFNRPNL+YEVR 
Sbjct:   233 PDYKALGILKRQFPNASLIGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQ 292

Query:   126 KXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             K             L  NG       I+YC  +   ++++  L   GI   AYHA +  +
Sbjct:   293 KPSNTEDFIEDIVKL-INGRYKGQSGIIYCFSQKDSEQVTISLQKLGIPAGAYHANMEPE 351

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              ++ V   W ++  QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD + 
Sbjct:   352 DKTKVHRRWAANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMK 411

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             +  +LYYG  D  R+  ++              E   ++ + +   MV YC+  + CRR 
Sbjct:   412 ADCILYYGFGDIFRISSMV------------VMENVGQQKLYE---MVSYCQNINKCRRV 456

Query:   302 KILESFGEQIPVSLCKNSCDAC 323
              I + F E      C   CD C
Sbjct:   457 LIAQHFDEVWSPEACNKMCDNC 478


>UNIPROTKB|F1SR01 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
            renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
            OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
            Uniprot:F1SR01
        Length = 649

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 123/322 (38%), Positives = 173/322 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++ ++ +    L+L+YVTPE  A +  FMS+L+K +       +AIDE HC S WGHDFR
Sbjct:   173 VHAEMVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAIDEVHCCSQWGHDFR 232

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+ L  L+   P+  ++ LTATA   V KD  + LC++      +SFNRPNL+YEVR 
Sbjct:   233 PDYKALGILKRQFPNTSLIGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQ 292

Query:   126 KXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             K             L  NG       I+YC  +   ++++  L   GI   AYHA +  +
Sbjct:   293 KPSNTEDFIEDIVKL-INGRYKGQSGIIYCFSQKDSEQVTVSLQKLGIHAGAYHANMEPE 351

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              +++V   W ++  QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD   
Sbjct:   352 DKTTVHRRWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDTK 411

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             +  +LYYG  D  R+  ++              E   ++ + +   MV YC+  S CRR 
Sbjct:   412 ADCILYYGFGDIFRISSMV------------VMENVGQQKLYE---MVSYCQNISKCRRV 456

Query:   302 KILESFGEQIPVSLCKNSCDAC 323
              I + F E      C   CD C
Sbjct:   457 LIAQHFDEVWSPEECNKMCDNC 478


>TIGR_CMR|CBU_0472 [details] [associations]
            symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
            species:227377 "Coxiella burnetii RSA 493" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
            GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
            GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
            ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
            Uniprot:Q83E59
        Length = 601

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 122/306 (39%), Positives = 170/306 (55%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 77
             L LLY+ PE   T  F+S+L+++     L LVAIDEAHC+S WGHDFRP Y +L  LR Y
Sbjct:   108 LDLLYIAPERLMTESFLSRLREVK----LALVAIDEAHCVSQWGHDFRPEYLRLGELREY 163

Query:    78 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC 137
              P VP +ALTATA  + ++D+++ L L    V  +SFNRPN+ Y +  K           
Sbjct:   164 FPKVPFIALTATADKQTRQDILQRLRLTKANVHIASFNRPNIRYTLLEKQKSYNQLVNFL 223

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
                KA+     IVYCL R   +E++A L A G S   YHAGL    R    + +      
Sbjct:   224 KDRKAD---FGIVYCLSRNRVEEVAAKLQADGYSALPYHAGLPAAQRGKTQEAFQRDDVN 280

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257
             ++VAT+AFGMGID+ +VR V H+++PK +E +YQE+GRAGRD LPS++LL YG+ D   +
Sbjct:   281 IIVATIAFGMGIDKPNVRFVVHYDLPKHIEGYYQETGRAGRDGLPSEALLLYGLRDIAVI 340

Query:   258 EFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCK 317
             +  +              E   +  +   + M  + E   CRR+ +L  F E +    C 
Sbjct:   341 KSFIEN---------GNNEIRKRIELHKLNCMSAFAEARTCRRRVLLNYFNESLTED-CG 390

Query:   318 NSCDAC 323
             N CD C
Sbjct:   391 N-CDIC 395


>UNIPROTKB|P46063 [details] [associations]
            symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
            "Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000733 "DNA strand
            renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
            evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
            EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
            EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
            EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
            IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
            UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
            ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
            STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
            PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
            Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
            CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
            HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
            PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
            PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
            EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
            ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
            Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
        Length = 649

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 121/322 (37%), Positives = 173/322 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++ ++ +    L+L+YVTPE  A +  FMS+L+K +       +A+DE HC S WGHDFR
Sbjct:   173 VHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFR 232

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+ L  L+   P+  ++ LTATA   V  D  + LC++      +SFNRPNL+YEVR 
Sbjct:   233 PDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQ 292

Query:   126 KXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             K             L  NG       I+YC  +   ++++  L   GI   AYHA L  +
Sbjct:   293 KPSNTEDFIEDIVKL-INGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPE 351

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              +++V   W ++  QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD + 
Sbjct:   352 DKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMK 411

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             +  +LYYG  D  R+  ++              E   ++ + +   MV YC+  S CRR 
Sbjct:   412 ADCILYYGFGDIFRISSMV------------VMENVGQQKLYE---MVSYCQNISKCRRV 456

Query:   302 KILESFGEQIPVSLCKNSCDAC 323
              + + F E      C   CD C
Sbjct:   457 LMAQHFDEVWNSEACNKMCDNC 478


>UNIPROTKB|F1PNP1 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
            RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
            KEGG:cfa:486641 Uniprot:F1PNP1
        Length = 646

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 119/322 (36%), Positives = 172/322 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++ ++ +    L+L+YVTPE  A +  FMS+L+K +       +A+DE HC S WGHDFR
Sbjct:   173 VHAEMINKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFR 232

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
             P Y+ L  L+   P+  ++ LTATA   V KD  + LC+       +SFNRPNL+YE+R 
Sbjct:   233 PDYKALGILKRQFPNTALMGLTATATSHVLKDAQKILCVGKCFTFTASFNRPNLYYEIRQ 292

Query:   126 KXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             K             L  NG       I+YC  +   ++++  L   GI   AYHA +  +
Sbjct:   293 KPSNTEDVIEDIVKL-INGRYKGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPE 351

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              ++ V   W ++  QVVVATVAFGMGID+ DVR + H ++ KS+E +YQESGRAGRD + 
Sbjct:   352 DKTRVHRRWSANEIQVVVATVAFGMGIDKPDVRFIIHHSMSKSIENYYQESGRAGRDDMK 411

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
             +  +LYYG  D  R+  ++              E   ++ + +   MV YC+  S CRR 
Sbjct:   412 ADCILYYGFGDIFRISSMV------------VMENVGQQKLYE---MVSYCQNISKCRRV 456

Query:   302 KILESFGEQIPVSLCKNSCDAC 323
              I + F E      C   CD C
Sbjct:   457 LIAQHFDEVWNAEACNRMCDNC 478


>TIGR_CMR|GSU_0898 [details] [associations]
            symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
            GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
            ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
            Uniprot:Q74ER2
        Length = 603

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 122/309 (39%), Positives = 173/309 (55%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 77
             L LLYV PE   T  F+ +L++I     + L AIDEAHC+S WGHDFRP Y +L  LR  
Sbjct:   108 LDLLYVAPERLMTDAFLERLREIP----IALFAIDEAHCVSQWGHDFRPEYVELGRLRGL 163

Query:    78 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC 137
              P VP++ALTATA  + + D++  L L++  +  + F+RPN+ Y V  K           
Sbjct:   164 FPTVPMIALTATADAQTRGDIVTRLGLRDAEMFVTGFDRPNIRYSVLEKQKPFRQLE--- 220

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
               L        IVYCL R   +E++  L A G+   AYHAGL D  RS V + ++    +
Sbjct:   221 EFLATRPREAGIVYCLSRKRVEEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIR 280

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257
             VVVATVAFGMGID+ +VR V H+++PK++E++YQE+GRAGRD LP+++LL +G  D    
Sbjct:   281 VVVATVAFGMGIDKPNVRFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIPVS 340

Query:   258 EFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCK 317
               ++                  +  +   + MV + E   CRR+ +L  FGE++    C 
Sbjct:   341 RSLIESGG---------NPEQVRIELHKLNAMVGFAEALVCRRRALLGYFGERLEEP-CG 390

Query:   318 NSCDACKHP 326
             N CD C  P
Sbjct:   391 N-CDLCLAP 398


>UNIPROTKB|O93530 [details] [associations]
            symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
            species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
            evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
            [GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
            "manganese ion binding" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
            SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
            EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
            ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
            Xenbase:XB-GENE-992879 Uniprot:O93530
        Length = 1436

 Score = 549 (198.3 bits), Expect = 1.0e-51, P = 1.0e-51
 Identities = 133/329 (40%), Positives = 184/329 (55%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             + +D+  GK  +R++Y+TPE  +  G +S L+ + +R  + L+AIDEAHCIS WGHDFR 
Sbjct:   568 VLQDVKDGK--MRVIYMTPEFCSR-G-ISLLQDLDNRYGITLIAIDEAHCISEWGHDFRS 623

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             +YR L SL+  LP+VPI+ALTATA+P +++D+ +SL L NP V  +SF+RPNL+ +V  K
Sbjct:   624 AYRSLGSLKRMLPNVPIVALTATASPSIREDITKSLNLHNPQVTCTSFDRPNLYLDVARK 683

Query:   127 XXXXXXXXXXCSVLKANG-----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
                         + K  G     +   IVYC  R T ++++A L   GI+C  YHAG+  
Sbjct:   684 TTNISIDLRQFLIKKQQGSGWEFEGATIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGI 743

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             K R  V   ++      VVATVAFGMGI++ D+R V H+  PK ME++YQE GRAGRD L
Sbjct:   744 KQRREVHHRFMRDEIHCVVATVAFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGL 803

Query:   242 PSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRK 301
             PS     +   D   M F            F  RE   K      ++M  Y   S CRRK
Sbjct:   804 PSCCHALWAQAD---MNFNRHMLGEIPNKGF--REYKLKM----LTKMEKYLNSSTCRRK 854

Query:   302 KILESFGE-QIP-----VSLCKNSCDACK 324
              IL  F + Q+      +   +  CD CK
Sbjct:   855 IILSHFEDKQLRKASSGIMGTEKCCDNCK 883


>TIGR_CMR|SO_4241 [details] [associations]
            symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
            species:211586 "Shewanella oneidensis MR-1" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
            GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
            ProtClustDB:CLSK907564 Uniprot:Q8E9M8
        Length = 607

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 121/325 (37%), Positives = 180/325 (55%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             ++  ++   L  G+  L+LLYV+PE   T  F+ +++ +     L++ AIDEAHCIS WG
Sbjct:   102 ELSLEVLRQLHLGE--LKLLYVSPERLLTADFIERMQSLP----LSMFAIDEAHCISQWG 155

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 121
             HDFRP Y  L  L+   P VP++ALTATA    ++++ E L + NP  L SSF+RPN+ Y
Sbjct:   156 HDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICERLGI-NPFKLLSSFDRPNIRY 214

Query:   122 EVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
              V  K            +L+ NG +  I+YC  R   DE++  L+  G    AYHAG+  
Sbjct:   215 TVAEKLNAANQLRQF--LLQQNGSS-GIIYCSSRRRVDEVAERLTLQGFHAKAYHAGMTP 271

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R  V D ++  +  +VVATVAFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L
Sbjct:   272 EERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGL 331

Query:   242 PSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRK 301
              +++ + +   D  R+  ++           S      +      + M  + E   CRR+
Sbjct:   332 EAEAFMLFDPADIGRVRHLIEQ---------SEPGPQQQVEFHKLNTMAAFAEAQTCRRQ 382

Query:   302 KILESFGEQIPVSLCKNSCDACKHP 326
              +L  F E   +  C N CD C  P
Sbjct:   383 VLLHYFDESA-LEPCGN-CDICLDP 405


>UNIPROTKB|P15043 [details] [associations]
            symbol:recQ species:83333 "Escherichia coli K-12"
            [GO:0046914 "transition metal ion binding" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
            "DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
            [GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
            helicase activity" evidence=IDA] [GO:0017117 "single-stranded
            DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
            "DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
            catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
            "SOS response" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
            GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
            GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
            KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
            PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
            ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
            MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
            EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
            KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
            EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
            BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
            BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
            Genevestigator:P15043 Uniprot:P15043
        Length = 609

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 124/311 (39%), Positives = 174/311 (55%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 77
             +RLLY+ PE      F+  L   H   +L  +A+DEAHCIS WGHDFRP Y  L  LR  
Sbjct:   116 IRLLYIAPERLMLDNFLEHLA--HWNPVL--LAVDEAHCISQWGHDFRPEYAALGQLRQR 171

Query:    78 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC 137
              P +P +ALTATA    ++D++  L L +PL+  SSF+RPN+ Y +  K           
Sbjct:   172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRY- 230

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
              V +  G +  I+YC  R   ++ +A L + GIS AAYHAGL +  R+ V + +     Q
Sbjct:   231 -VQEQRGKS-GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ 288

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257
             +VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y   D   M
Sbjct:   289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---M 345

Query:   258 EFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE--QIPVSL 315
              ++               ER    ++  F+      E   CRR  +L  FGE  Q P   
Sbjct:   346 AWLRRCLEEKPQGQLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGEGRQEP--- 396

Query:   316 CKNSCDACKHP 326
             C N CD C  P
Sbjct:   397 CGN-CDICLDP 406


>UNIPROTKB|Q9KVF0 [details] [associations]
            symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
            recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
            RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
            DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
            Uniprot:Q9KVF0
        Length = 620

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 120/320 (37%), Positives = 176/320 (55%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             IY  + +G+  L+LLYV+PE   T  F+ +L  +     L ++A+DEAHCIS WGHDFRP
Sbjct:   119 IYNRMHAGQ--LKLLYVSPERVLTAEFIERLSHLP----LAMIAVDEAHCISQWGHDFRP 172

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
              Y  L  L+   P+VP++ALTATA    + D+M+ L L  P     SF+RPN+ Y +  K
Sbjct:   173 EYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEK 232

Query:   127 XXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 186
                          L+     C I+YC  R   + L+  L    I  A+YHAG++   R+ 
Sbjct:   233 HKPVSQVIRY---LETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAW 289

Query:   187 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 246
             V + +     Q+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++
Sbjct:   290 VQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 349

Query:   247 LYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILES 306
             + Y   D   +  +L           + ++  S K     + M  + E   CRR+ +L  
Sbjct:   350 MLYDPADMNWLRRMLDEKPDG-----AQKQVESHK----LTAMGAFAEAQTCRRQVLLNY 400

Query:   307 FGEQIPVSLCKNSCDACKHP 326
             FGE      C N CD C  P
Sbjct:   401 FGEYRDKP-CGN-CDICLDP 418


>TIGR_CMR|VC_0196 [details] [associations]
            symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
            "DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
            RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
            DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
            Uniprot:Q9KVF0
        Length = 620

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 120/320 (37%), Positives = 176/320 (55%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             IY  + +G+  L+LLYV+PE   T  F+ +L  +     L ++A+DEAHCIS WGHDFRP
Sbjct:   119 IYNRMHAGQ--LKLLYVSPERVLTAEFIERLSHLP----LAMIAVDEAHCISQWGHDFRP 172

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
              Y  L  L+   P+VP++ALTATA    + D+M+ L L  P     SF+RPN+ Y +  K
Sbjct:   173 EYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEK 232

Query:   127 XXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 186
                          L+     C I+YC  R   + L+  L    I  A+YHAG++   R+ 
Sbjct:   233 HKPVSQVIRY---LETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAW 289

Query:   187 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 246
             V + +     Q+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++
Sbjct:   290 VQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 349

Query:   247 LYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILES 306
             + Y   D   +  +L           + ++  S K     + M  + E   CRR+ +L  
Sbjct:   350 MLYDPADMNWLRRMLDEKPDG-----AQKQVESHK----LTAMGAFAEAQTCRRQVLLNY 400

Query:   307 FGEQIPVSLCKNSCDACKHP 326
             FGE      C N CD C  P
Sbjct:   401 FGEYRDKP-CGN-CDICLDP 418


>ASPGD|ASPL0000072255 [details] [associations]
            symbol:recQ species:162425 "Emericella nidulans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
            HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
            EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
        Length = 541

 Score = 288 (106.4 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
 Identities = 65/124 (52%), Positives = 81/124 (65%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             I EDL SG P +RLLYVTPEL     F   L+ +H +  L  +AIDEAHCIS WGHDFRP
Sbjct:    87 ILEDLLSGHPRIRLLYVTPELCQNNTFRRNLQTMHKQRELVRIAIDEAHCISEWGHDFRP 146

Query:    67 SYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFY 121
             +Y+ LS  R+ L  P VPI ALTATA  +V+ D++  L L NP  LK   +   RPN+ Y
Sbjct:   147 AYKALSWFRHSLTNPPVPISALTATATSQVRTDIINILGL-NPRRLKIFSTPSARPNIHY 205

Query:   122 EVRY 125
             E+R+
Sbjct:   206 EIRF 209

 Score = 223 (83.6 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
 Identities = 66/189 (34%), Positives = 91/189 (48%)

Query:   149 IVYCLERTTCDELSAYL--SAGGISCAAYHAGLNDKARSSVLDDWISSRKQ--------- 197
             IVY   R   + L+  L  S   I   AYHAGL    R  V ++WI+ +KQ         
Sbjct:   257 IVYVSTRVAAERLAHVLCQSDNRIRAVAYHAGLVAADRVRVQNEWIAPQKQPQQRGPGAK 316

Query:   198 -----VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252
                  ++VAT AFGMGID  +VR V H++ P++ E F QESGRAGRD   + S++YY + 
Sbjct:   317 PVTFYIIVATTAFGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGRAAASIVYYSLQ 376

Query:   253 DRRRMEFILXXXXXXXXXXFSTRE---RSSKKSI--------SDFSQMVDYCEGSG-CRR 300
             +R R+   L             R       K S+          F ++V YCE +  CR 
Sbjct:   377 ERERVLNHLRRDIENVNNSTGGRNAGLNQDKVSLLRNLYARKQSFEKVVRYCETTTRCRH 436

Query:   301 KKILESFGE 309
             + I E FG+
Sbjct:   437 ELIKEFFGD 445

 Score = 44 (20.5 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query:   312 PVSLCKNSCDACKH-PNLLAKYLGELTSA 339
             P S C  +CD CK  P  L      + SA
Sbjct:   479 PSSPCDYACDFCKEGPGELTARKARMASA 507


>UNIPROTKB|F1PZR3 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
            Uniprot:F1PZR3
        Length = 1499

 Score = 517 (187.1 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 122/332 (36%), Positives = 187/332 (56%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             + ED+  GK   R++Y+TPE  +  G +  L+++ +   + L+A+DEAHCIS WGHDFR 
Sbjct:   685 VLEDIKLGK--YRIVYITPEFCS--GNLFLLQQLQADIGITLIAVDEAHCISEWGHDFRS 740

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             S+R L SL+  LP VPI+ALTATA+  +++D++  L L+NP +  + F+RPNL+ EVR K
Sbjct:   741 SFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRK 800

Query:   127 XXXXXXXXXXCSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
                         V K +     +   I+YC  R T ++++A L    ++C AYHAGL+ K
Sbjct:   801 TGSILQDLDQFLVQKTSSIWEFEGPTIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIK 860

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             +R  +   ++    Q VVAT+AFGMGI++ D+R V H+  PK ME++YQE GRAGRD L 
Sbjct:   861 SRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQ 920

Query:   243 SKS-LLYYGMD---DRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGC 298
             S   +L+   D   +R R+  I             T E+     +   ++M  Y   + C
Sbjct:   921 SSCHVLWAPADICLNRHRLSEI-------------TSEKFRLYKLKMMAKMEKYLHSTRC 967

Query:   299 RRKKILESFGEQ------IPVSLCKNSCDACK 324
             RR+ IL  F ++      + +   +  CD C+
Sbjct:   968 RRQLILSHFEDKQLRKASVGIMGTEQCCDNCR 999


>DICTYBASE|DDB_G0268512 [details] [associations]
            symbol:wrn "Werner syndrome protein" species:44689
            "Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
            GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
            EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
            EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
            OMA:FLFNKTE Uniprot:B0G0Y4
        Length = 1136

 Score = 478 (173.3 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 118/314 (37%), Positives = 166/314 (52%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 64
             +K YE +  G     L+Y+TPE      + S  + + +  +  L AIDEAHCIS WGH F
Sbjct:   379 SKEYELIFKGY--YNLVYITPERIINE-YQSIGELVRNEKIC-LFAIDEAHCISQWGHSF 434

Query:    65 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRPNLFYE 122
             R SYRKL  LRN  P VPI+A+TATA   ++ D++ +L + N    + KSS NRPN++Y+
Sbjct:   435 RESYRKLQELRNQFPTVPIMAVTATATKSIESDIINNLGIGNGNCKMFKSSKNRPNIYYK 494

Query:   123 VRYKXXXXXXXXXXC-SVL----KANG--DTCAIVYCLERTTCDELSAYLSAGGISCAAY 175
             V  K             +L    K  G      I+YC      +EL+ +L    I    Y
Sbjct:   495 VIIKDKLVSNDFKMILDILLETRKTIGVVSNSTIIYCTTIQIANELNRFLCDNKIQSNVY 554

Query:   176 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 235
             H+ L DK R   L +++ ++ +V+VAT+AFGMGID+ DVRL+ ++   KS+E FYQESGR
Sbjct:   555 HSQLGDKQRDETLKNFLFNKTEVIVATIAFGMGIDKHDVRLIINYGASKSVEDFYQESGR 614

Query:   236 AGRDQLPSKSLLYYGMDDRRRMEFILXXXXX----XXXXXFSTRERSSKKSISDFSQMVD 291
             AGRD L S SL+ Y + D  +  F+L               S   +SS  S S      D
Sbjct:   615 AGRDGLQSLSLIIYSLQDFVKSSFLLRNNNNYNKYSSSSSSSQSSQSSPLSSSSSPSQFD 674

Query:   292 YCEGSGCRRKKILE 305
               E      +K+L+
Sbjct:   675 SLEPKKSENEKLLK 688

 Score = 65 (27.9 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query:   298 CRRKKILESFGEQIPVSLCKN--SCDACKHPNLLAKYLGELTSAVLQ 342
             CRR+ +LE+FGE+  +       SCD C      + Y+  L+  VLQ
Sbjct:   699 CRRQMLLEAFGEEFIIDANNGCASCDNCVELRDSSDYIN-LSFEVLQ 744


>UNIPROTKB|F1PUF8 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
            OMA:TERICLM Uniprot:F1PUF8
        Length = 1574

 Score = 517 (187.1 bits), Expect = 3.2e-48, P = 3.2e-48
 Identities = 122/332 (36%), Positives = 187/332 (56%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             + ED+  GK   R++Y+TPE  +  G +  L+++ +   + L+A+DEAHCIS WGHDFR 
Sbjct:   717 VLEDIKLGK--YRIVYITPEFCS--GNLFLLQQLQADIGITLIAVDEAHCISEWGHDFRS 772

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             S+R L SL+  LP VPI+ALTATA+  +++D++  L L+NP +  + F+RPNL+ EVR K
Sbjct:   773 SFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRK 832

Query:   127 XXXXXXXXXXCSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
                         V K +     +   I+YC  R T ++++A L    ++C AYHAGL+ K
Sbjct:   833 TGSILQDLDQFLVQKTSSIWEFEGPTIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIK 892

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
             +R  +   ++    Q VVAT+AFGMGI++ D+R V H+  PK ME++YQE GRAGRD L 
Sbjct:   893 SRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQ 952

Query:   243 SKS-LLYYGMD---DRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGC 298
             S   +L+   D   +R R+  I             T E+     +   ++M  Y   + C
Sbjct:   953 SSCHVLWAPADICLNRHRLSEI-------------TSEKFRLYKLKMMAKMEKYLHSTRC 999

Query:   299 RRKKILESFGEQ------IPVSLCKNSCDACK 324
             RR+ IL  F ++      + +   +  CD C+
Sbjct:  1000 RRQLILSHFEDKQLRKASVGIMGTEQCCDNCR 1031


>UNIPROTKB|O34748 [details] [associations]
            symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
            ProteinModelPortal:O34748 SMR:O34748
            EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
            PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
            ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
            TIGRFAMs:TIGR01389 Uniprot:O34748
        Length = 591

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 126/355 (35%), Positives = 180/355 (50%)

Query:     2 QVKTKIYEDLDSGKP-SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60
             Q   +IYE L+  K  + +L Y+TPE   +  F+  L+ I     + LVAIDEAHCIS W
Sbjct:    92 QSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGID----VPLVAIDEAHCISQW 147

Query:    61 GHDFRPSYRKLSSLRNYLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL 119
             GHDFRPSYR +  L   L D P I+ALTATA P+V  D+ + L +Q    + + F+R NL
Sbjct:   148 GHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENL 207

Query:   120 FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179
              ++V  K             ++ N     IVY   R   D +   L    +    YH GL
Sbjct:   208 TFKV-VKGENKDRFID--EYVQNNRHEAGIVYTATRKEADRIYERLKRNQVRAGRYHGGL 264

Query:   180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239
              D  R    + +++   QV+VAT AFGMGID+ ++R V H  IPK ME++YQE+GRAGRD
Sbjct:   265 ADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRAGRD 324

Query:   240 QLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCR 299
              L S+ +L +   D     F++           S  E   K+ +    QMVDYC    C 
Sbjct:   325 GLASECVLLFSPQDIMVQRFLIEQ---------SEHEEKQKQDLKKLRQMVDYCHTEDCL 375

Query:   300 RKKILESFGEQIPVSL--CKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFIS 352
             ++ IL  FGE+ P +   C N  D     ++  +    L+  +  K  F +  ++
Sbjct:   376 QRFILMYFGEKEPDACGQCGNCTDTRAAHDVTREAQMVLSCIIRMKERFGKTMVA 430


>UNIPROTKB|F1PZR2 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
            Uniprot:F1PZR2
        Length = 1336

 Score = 514 (186.0 bits), Expect = 4.8e-48, P = 4.8e-48
 Identities = 122/333 (36%), Positives = 185/333 (55%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             + ED+  GK   R++Y+TPE  +  G +  L+++ +   + L+A+DEAHCIS WGHDFR 
Sbjct:   604 VLEDIKLGK--YRIVYITPEFCS--GNLFLLQQLQADIGITLIAVDEAHCISEWGHDFRS 659

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             S+R L SL+  LP VPI+ALTATA+  +++D++  L L+NP +  + F+RPNL+ EVR K
Sbjct:   660 SFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRK 719

Query:   127 XXXXXXXXXXCSVLKANGDTC-----AIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
                         V K            I+YC  R T ++++A L    ++C AYHAGL+ 
Sbjct:   720 TGSILQDLDQFLVQKTRNSIWEFEGPTIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDI 779

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             K+R  +   ++    Q VVAT+AFGMGI++ D+R V H+  PK ME++YQE GRAGRD L
Sbjct:   780 KSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGL 839

Query:   242 PSKS-LLYYGMD---DRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSG 297
              S   +L+   D   +R R+  I             T E+     +   ++M  Y   + 
Sbjct:   840 QSSCHVLWAPADICLNRHRLSEI-------------TSEKFRLYKLKMMAKMEKYLHSTR 886

Query:   298 CRRKKILESFGEQ------IPVSLCKNSCDACK 324
             CRR+ IL  F ++      + +   +  CD C+
Sbjct:   887 CRRQLILSHFEDKQLRKASVGIMGTEQCCDNCR 919


>ZFIN|ZDB-GENE-070702-2 [details] [associations]
            symbol:wrn "Werner syndrome" species:7955 "Danio
            rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0044237
            "cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
            SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
            ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
        Length = 1436

 Score = 337 (123.7 bits), Expect = 5.6e-48, Sum P(2) = 5.6e-48
 Identities = 79/206 (38%), Positives = 115/206 (55%)

Query:     4 KTK-IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 62
             +TK + E +  G    R++Y+TPE  +  G +  L ++     L+L+A+DEAHCIS WGH
Sbjct:   518 QTKNLNEQVKRG--DFRVVYMTPEFCS--GNIPLLVQLDRTVGLSLIAVDEAHCISQWGH 573

Query:    63 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             DFR +YR+L  L+  LP VP LALTATA+P ++ D+++SL L NP++  +SF+RPNL+ +
Sbjct:   574 DFRSAYRELGKLKKNLPTVPFLALTATASPSIRDDIIKSLHLINPMITCTSFDRPNLYLD 633

Query:   123 VRYKXXXXXXXXXXCSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG 178
             V  K            V K  G    +  AIVYC  +   + ++  L    I C  YHAG
Sbjct:   634 VNRKSGDVIQDLKRFLVKKKGGGYEFEGSAIVYCPSKKEAERVTTALFKLDIPCGVYHAG 693

Query:   179 LNDKARSSVLDDWISSRKQVVVATVA 204
             L+ K R      ++    QV    VA
Sbjct:   694 LSIKQRRETQHQFMRDEIQVHAYDVA 719

 Score = 209 (78.6 bits), Expect = 5.6e-48, Sum P(2) = 5.6e-48
 Identities = 57/143 (39%), Positives = 79/143 (55%)

Query:   188 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 247
             LD+ ++S+   VVATVAFGMGI++ D+R V H+  PK ME++YQE GRAGRD LPS   +
Sbjct:   759 LDEIMNSQGWCVVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHV 818

Query:   248 YYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 307
              +   D    +FIL           S R RS K  I   ++M  Y   + CRRK IL  F
Sbjct:   819 LWMPGDMALNKFILNQSK-------SERFRSYK--IDMMAKMEKYLNSTKCRRKLILCHF 869

Query:   308 GEQ----IPVSLCKNS--CDACK 324
              ++    +   +  +S  CD C+
Sbjct:   870 EDKRLRKVTSGILGSSQCCDNCR 892


>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
            symbol:PF14_0278 "ATP-dependent DNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
            RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
            EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
            EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
            Uniprot:Q8ILG5
        Length = 1440

 Score = 296 (109.3 bits), Expect = 6.3e-48, Sum P(2) = 6.3e-48
 Identities = 68/221 (30%), Positives = 113/221 (51%)

Query:   104 LQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LKA----------NGDTCA---- 148
             LQN L+ +SS N+ NLFY VR K            + LK           N   C+    
Sbjct:   228 LQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKICSYNST 287

Query:   149 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208
             ++Y   +  C+ + ++L   G+    YHA L +  +    + ++    Q++VATVAFGMG
Sbjct:   288 LIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGMG 347

Query:   209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXX 268
             ID+ D+R + H+   +S+EA+ Q+ GRAGRD   ++++L++ ++D  +++ I+       
Sbjct:   348 IDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRENTAN 407

Query:   269 XXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 309
                  T  +  +  +  F+Q  DY   + CRRKKI E F E
Sbjct:   408 NL-IETNFQRVEHIVHIFTQASDYAYSTACRRKKIYEYFDE 447

 Score = 250 (93.1 bits), Expect = 6.3e-48, Sum P(2) = 6.3e-48
 Identities = 57/123 (46%), Positives = 78/123 (63%)

Query:     6 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             KI  ++  G    +++Y +PE       +  L K  +R LL  +AIDE HC+S WGHDFR
Sbjct:   134 KILNEIKHG--IYKIVYCSPEYALNNKDVFILLK--NRILL--IAIDEVHCMSEWGHDFR 187

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC--LQNPLVLKSSFNRPNLFYEV 123
             PSYRKL+ LR  L ++PI+ LTAT    VQ D++++L   LQN L+ +SS N+ NLFY V
Sbjct:   188 PSYRKLNELRIILKEIPIMCLTATCTKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSV 247

Query:   124 RYK 126
             R K
Sbjct:   248 REK 250


>UNIPROTKB|Q8ILG5 [details] [associations]
            symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
            RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
            EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
            EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
            Uniprot:Q8ILG5
        Length = 1440

 Score = 296 (109.3 bits), Expect = 6.3e-48, Sum P(2) = 6.3e-48
 Identities = 68/221 (30%), Positives = 113/221 (51%)

Query:   104 LQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LKA----------NGDTCA---- 148
             LQN L+ +SS N+ NLFY VR K            + LK           N   C+    
Sbjct:   228 LQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKICSYNST 287

Query:   149 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208
             ++Y   +  C+ + ++L   G+    YHA L +  +    + ++    Q++VATVAFGMG
Sbjct:   288 LIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGMG 347

Query:   209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXX 268
             ID+ D+R + H+   +S+EA+ Q+ GRAGRD   ++++L++ ++D  +++ I+       
Sbjct:   348 IDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRENTAN 407

Query:   269 XXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 309
                  T  +  +  +  F+Q  DY   + CRRKKI E F E
Sbjct:   408 NL-IETNFQRVEHIVHIFTQASDYAYSTACRRKKIYEYFDE 447

 Score = 250 (93.1 bits), Expect = 6.3e-48, Sum P(2) = 6.3e-48
 Identities = 57/123 (46%), Positives = 78/123 (63%)

Query:     6 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             KI  ++  G    +++Y +PE       +  L K  +R LL  +AIDE HC+S WGHDFR
Sbjct:   134 KILNEIKHG--IYKIVYCSPEYALNNKDVFILLK--NRILL--IAIDEVHCMSEWGHDFR 187

Query:    66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC--LQNPLVLKSSFNRPNLFYEV 123
             PSYRKL+ LR  L ++PI+ LTAT    VQ D++++L   LQN L+ +SS N+ NLFY V
Sbjct:   188 PSYRKLNELRIILKEIPIMCLTATCTKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSV 247

Query:   124 RYK 126
             R K
Sbjct:   248 REK 250


>WB|WBGene00004322 [details] [associations]
            symbol:rcq-5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            [GO:0008340 "determination of adult lifespan" evidence=IMP]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
            ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
            EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
            UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
            InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
        Length = 809

 Score = 503 (182.1 bits), Expect = 1.4e-47, P = 1.4e-47
 Identities = 110/273 (40%), Positives = 152/273 (55%)

Query:     4 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             +++I  +L   KP++R+LY+T E  AT G    L  + +R +L  + +DEAHC++ WGHD
Sbjct:   258 RSRIMGELAKEKPTIRMLYLTAEGVATDGTKKLLNGLANRDVLRYIVVDEAHCVTQWGHD 317

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE- 122
             FRP Y  L SLR+  P VP +ALTATA  K Q D+   L L+NP   KS   R NLFY+ 
Sbjct:   318 FRPDYLTLGSLRDVCPGVPWVALTATANAKAQDDIAFQLKLRNPESFKSGTYRDNLFYDN 377

Query:   123 -----------VRYKXXXXXXXXXXCSVLKANGDT---CAIVYCLERTTCDELSAYLSAG 168
                        V  K           +    N  T    AIVYC  R  C +++  L   
Sbjct:   378 HMASFITKCLTVDAKTSSSNLTKHEKAERSQNKKTFTGSAIVYCRSRNECGQVAKMLEIA 437

Query:   169 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 228
             GI   AYHAGL  K R+ V + W+++   VV ATVAFGMGID+ DVR V H++  +++  
Sbjct:   438 GIPAMAYHAGLGKKDRNEVQEKWMNNEIPVVAATVAFGMGIDKPDVRAVIHWSPSQNLAG 497

Query:   229 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261
             +YQE+GRAGRD   S   +YY   D+  + F++
Sbjct:   498 YYQEAGRAGRDGKRSYCRIYYSKQDKNALNFLV 530

 Score = 327 (120.2 bits), Expect = 1.8e-28, P = 1.8e-28
 Identities = 71/186 (38%), Positives = 103/186 (55%)

Query:   148 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 207
             AIVYC  R  C +++  L   GI   AYHAGL  K R+ V + W+++   VV ATVAFGM
Sbjct:   417 AIVYCRSRNECGQVAKMLEIAGIPAMAYHAGLGKKDRNEVQEKWMNNEIPVVAATVAFGM 476

Query:   208 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI----LXX 263
             GID+ DVR V H++  +++  +YQE+GRAGRD   S   +YY   D+  + F+    L  
Sbjct:   477 GIDKPDVRAVIHWSPSQNLAGYYQEAGRAGRDGKRSYCRIYYSKQDKNALNFLVSGELAK 536

Query:   264 XXXXXXXXFSTRERSSK--KSI-SDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSC 320
                      +  E++    KSI +  ++M++YCE + CR   I  SF +      CK +C
Sbjct:   537 LREKAKKNNAEGEKAEMQIKSIQTGLAKMLEYCESARCRHVSIA-SFFDDTECRPCKTNC 595

Query:   321 DACKHP 326
             D C+ P
Sbjct:   596 DYCRDP 601


>UNIPROTKB|F1NAR0 [details] [associations]
            symbol:F1NAR0 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
            "magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
            binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
            [GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
            repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0009267 "cellular response to starvation"
            evidence=IEA] [GO:0009378 "four-way junction helicase activity"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0010259 "multicellular organismal aging" evidence=IEA]
            [GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
            "replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
            to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
            complex" evidence=IEA] [GO:0032403 "protein complex binding"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0042803 "protein homodimerization activity" evidence=IEA]
            [GO:0042981 "regulation of apoptotic process" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
            GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
            GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
            Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
        Length = 1367

 Score = 500 (181.1 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 121/325 (37%), Positives = 179/325 (55%)

Query:    12 DSGKPSL-RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             D+ K  L R++Y+TPE  +  G +  L+ I     + L+A+DEAHCIS WGHDFR S+RK
Sbjct:   540 DNIKAGLYRVIYMTPEFCS--GNLELLQDIDRTTGIALIAVDEAHCISEWGHDFRISFRK 597

Query:    71 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXX 130
             L+SL+  LP VPI+ALTATA+P +++D++  L L+NP V  +SF+RPNL+ EV  +    
Sbjct:   598 LNSLKKALPSVPIVALTATASPSIREDIVNCLNLKNPQVTCTSFDRPNLYLEVGRQSGNT 657

Query:   131 XXXXXXCSVLKANGDTC-----AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
                       K +  T       I+YC  R   +++   L+  G++C AYHAG+  + R 
Sbjct:   658 LRDLKQFLTRKGSSSTYEFEGPTIIYCPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRR 717

Query:   186 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 245
                  ++    Q VVATVAFGMGI++ D+R+V H+  PK ME++YQE GRAGRD LP+  
Sbjct:   718 DTHHQFMRDEIQCVVATVAFGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASC 777

Query:   246 LLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILE 305
              + +   D       L           + + R  K  + +  +M  Y   + CR + IL 
Sbjct:   778 HVLWTAAD-------LVLNRRLLNEIHNEKFRLYKLKMLE--KMEKYLSSNSCRSRIILS 828

Query:   306 SFGE-QI-PVSL----CKNSCDACK 324
              F + Q+  VS      +  CD C+
Sbjct:   829 HFEDKQLRKVSSGIMGTEECCDNCR 853


>TIGR_CMR|BA_2818 [details] [associations]
            symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
            species:198094 "Bacillus anthracis str. Ames" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
            "DNA unwinding involved in replication" evidence=ISS] [GO:0006281
            "DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
            evidence=ISS] [GO:0009378 "four-way junction helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
            GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
            RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
            DNASU:1085972 EnsemblBacteria:EBBACT00000011651
            EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
            GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
            KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
            BioCyc:BANT260799:GJAJ-2691-MONOMER
            BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
        Length = 705

 Score = 488 (176.8 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 110/306 (35%), Positives = 162/306 (52%)

Query:    19 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 78
             +L YV PE   +  F+ +L  I  +  + ++AIDEAHCIS WGHDFRPSY  +  + +YL
Sbjct:   109 KLFYVAPERLDSMEFVDQL--IDMK--IPMIAIDEAHCISQWGHDFRPSYLHIHRILDYL 164

Query:    79 PDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC 137
             P+ P +LALTATA P+V+ D+  +L +     + ++F R NL + V              
Sbjct:   165 PEEPLVLALTATATPQVRDDICNTLGINQENTIMTTFERENLSFSV---IKGQDRNAYLA 221

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
               ++ N     I+Y   R   D+L   L   G+S + YHAG++D  R+   + ++     
Sbjct:   222 DYIRQNQKESGIIYAATRKVVDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVS 281

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257
             V+VAT AFGMGID+ ++R V H+ +PK+ME++YQE+GRAGRD L S  +L Y   D +  
Sbjct:   282 VMVATSAFGMGIDKSNIRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQ 341

Query:   258 EFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCK 317
              F++           S  E      +     M DYC    C +  IL+ FGE+ P   C 
Sbjct:   342 RFLIDQ---------SIGESRFSNELEKLQNMTDYCHTEQCLQSFILQYFGEE-PKEDC- 390

Query:   318 NSCDAC 323
               C  C
Sbjct:   391 GRCGNC 396


>UNIPROTKB|Q14191 [details] [associations]
            symbol:WRN "Werner syndrome ATP-dependent helicase"
            species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
            "regulation of growth rate" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0031297 "replication fork processing" evidence=IMP;IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
            maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
            [GO:0010259 "multicellular organismal aging" evidence=IMP]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
            [GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
            [GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
            exonuclease activity" evidence=IDA] [GO:0042803 "protein
            homodimerization activity" evidence=IDA] [GO:0032403 "protein
            complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
            in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
            evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
            [GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
            DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
            activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
            evidence=IDA] [GO:0009378 "four-way junction helicase activity"
            evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
            [GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
            "positive regulation of hydrolase activity" evidence=IDA]
            [GO:0006979 "response to oxidative stress" evidence=IDA]
            [GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
            binding" evidence=IDA] [GO:0030145 "manganese ion binding"
            evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
            [GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
            radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
            evidence=IDA] [GO:0009267 "cellular response to starvation"
            evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
            evidence=IDA] [GO:0042981 "regulation of apoptotic process"
            evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
            catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
            evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
            GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
            GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
            MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
            GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
            GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
            EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
            EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
            UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
            PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
            PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
            PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
            ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
            MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
            PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
            KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
            H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
            MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
            HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
            OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
            EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
            CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
            Uniprot:Q14191
        Length = 1432

 Score = 499 (180.7 bits), Expect = 2.2e-46, P = 2.2e-46
 Identities = 118/327 (36%), Positives = 177/327 (54%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             +  D+  GK   R++YVTPE  +  G M  L+++ +   + L+A+DEAHCIS WGHDFR 
Sbjct:   627 VLTDIKLGK--YRIVYVTPEYCS--GNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRD 682

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             S+RKL SL+  LP VPI+ALTATA+  +++D++  L L+NP +  + F+RPNL+ EVR K
Sbjct:   683 SFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRK 742

Query:   127 XXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
                         V  ++    +   I+YC  R    +++  L    +SC  YHAG++   
Sbjct:   743 TGNILQDLQPFLVKTSSHWEFEGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFST 802

Query:   184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
             R  +   ++    Q V+AT+AFGMGI++ D+R V H+  PK ME++YQE GRAGRD L S
Sbjct:   803 RKDIHHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQS 862

Query:   244 KSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKI 303
                + +   D      +L              E+     +   ++M  Y   S CRR+ I
Sbjct:   863 SCHVLWAPADINLNRHLLTEIR---------NEKFRLYKLKMMAKMEKYLHSSRCRRQII 913

Query:   304 LESFGE-QIP-VSL----CKNSCDACK 324
             L  F + Q+   SL     +  CD C+
Sbjct:   914 LSHFEDKQVQKASLGIMGTEKCCDNCR 940


>UNIPROTKB|E1BEE6 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0042981 "regulation of apoptotic process"
            evidence=IEA] [GO:0042803 "protein homodimerization activity"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
            "MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
            nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0030145 "manganese ion binding"
            evidence=IEA] [GO:0010259 "multicellular organismal aging"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0009267 "cellular response to starvation" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=IEA] [GO:0006284
            "base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
            evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
            DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
            GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
            EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
            EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
            EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
            EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
            EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
            EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
            EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
            EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
            EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
            EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
            EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
            EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
            IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
        Length = 1404

 Score = 488 (176.8 bits), Expect = 3.2e-45, P = 3.2e-45
 Identities = 116/328 (35%), Positives = 175/328 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             + ED+  GK   R++Y+TPE  +  G +  L+++ +   + L+A+DEAHCIS WGHDFR 
Sbjct:   593 VVEDIKLGK--YRIVYLTPEFCS--GNLELLRQLEANIGITLIAVDEAHCISEWGHDFRN 648

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             S+R L  L+   P VPI+ALTATA   V++D++  L L++P +  + F+RPNL+ EV  K
Sbjct:   649 SFRDLGCLKAEFPKVPIVALTATAGSSVREDIVCCLNLKDPQITCTGFDRPNLYLEVGRK 708

Query:   127 XXXXXXXXXXCSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
                         V K++     +   I+YC  R   ++++A L    ++C  YHAGL+  
Sbjct:   709 TGDILQDLKQFLVCKSSSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLACGTYHAGLSIN 768

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R  V   ++    Q V+ATVAFGMGI++ D+R V H+  PK ME++YQE GRAGRD L 
Sbjct:   769 LRKQVHHRFMRDEIQCVIATVAFGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQ 828

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKK 302
             S   + +   D      +L              E+     +    +M  Y   S CRR+ 
Sbjct:   829 SSCHVLWAPADMNLNRCLLSEIR---------NEKFRLYKLKMMGKMEKYLYSSKCRRQI 879

Query:   303 ILESFGEQ------IPVSLCKNSCDACK 324
             IL  F ++      + +   +N CD CK
Sbjct:   880 ILSHFEDKQLRKASVGIMGTENCCDNCK 907


>MGI|MGI:109635 [details] [associations]
            symbol:Wrn "Werner syndrome homolog (human)" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
            "Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
            evidence=ISO] [GO:0000723 "telomere maintenance"
            evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
            repair" evidence=ISO] [GO:0001302 "replicative cell aging"
            evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
            activity" evidence=ISO] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
            [GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
            "exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
            [GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
            "DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
            [GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
            damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
            stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
            exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
            response to starvation" evidence=ISO] [GO:0009378 "four-way
            junction helicase activity" evidence=ISO] [GO:0010225 "response to
            UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
            evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
            ion binding" evidence=ISO] [GO:0031297 "replication fork
            processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
            transport" evidence=ISO] [GO:0032403 "protein complex binding"
            evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
            [GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
            "protein homodimerization activity" evidence=ISO] [GO:0042981
            "regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
            DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
            metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0051345 "positive regulation of hydrolase
            activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
            GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
            GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
            GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
            HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
            OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
            EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
            EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
            RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
            PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
            SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
            PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
            Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
            InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
            Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
            GermOnline:ENSMUSG00000031583 Uniprot:O09053
        Length = 1401

 Score = 487 (176.5 bits), Expect = 4.1e-45, P = 4.1e-45
 Identities = 120/332 (36%), Positives = 177/332 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             I  D+  GK   R++Y+TPE  +  G +  L+++ S   + L+A+DEAHCIS WGHDFR 
Sbjct:   591 ILGDVKLGK--YRVIYITPEFCS--GNLDLLQQLDSSIGITLIAVDEAHCISEWGHDFRS 646

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             S+R L SL+  LP VP++AL+ATA+  +++D++  L L++P +  + F+RPNL+ EV  K
Sbjct:   647 SFRMLGSLKTALPLVPVIALSATASSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRK 706

Query:   127 XXXXXXXXXXCSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
                         V KA+     +   I+YC  R   ++++A L    ++C  YHAG+   
Sbjct:   707 TGNILQDLKPFLVRKASSAWEFEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKIS 766

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R  V   ++    Q VVATVAFGMGI++ D+R V H+  PK ME++YQE GRAGRD L 
Sbjct:   767 ERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQ 826

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKK 302
             S   L +   D      +L              E+     +    +M  Y   S CRR+ 
Sbjct:   827 SSCHLLWAPADFNTSRNLLIEIHD---------EKFRLYKLKMMVKMEKYLHSSQCRRRI 877

Query:   303 ILESFGEQI--PVSL----CKNSCDACKHPNL 328
             IL  F ++     SL     +  CD C+ P L
Sbjct:   878 ILSHFEDKCLQKASLDIMGTEKCCDNCR-PRL 908


>UNIPROTKB|F1RX70 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
            Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
        Length = 1409

 Score = 474 (171.9 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 114/328 (34%), Positives = 175/328 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             + ED+  GK   R++Y+TPE  +  G +  L+ + +   + ++A+DEAHCIS WGHDFR 
Sbjct:   595 VLEDIKLGK--YRIVYLTPEFCS--GNLDLLQHLEANIGITVIAVDEAHCISEWGHDFRN 650

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             S+R L SL++ LP VPI+ALTAT    +++D++  L L++P +  + F+RPNL+ EV  K
Sbjct:   651 SFRTLGSLKSALPLVPIVALTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLYLEVGRK 710

Query:   127 XXXXXXXXXXCSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
                         V K +     +   I+YC  R   ++++A L    ++C  YHAGL+  
Sbjct:   711 TGDILQDLKQFLVQKTSSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLACETYHAGLSIH 770

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R  V   ++    Q V+AT+AFGMGI++ D+R V H+  PK +E++YQE GRAGRD L 
Sbjct:   771 LRKQVHHKFMRDEIQCVIATIAFGMGINKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQ 830

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKK 302
             S   + +   D      +L              E      +   ++M  Y   S CRR+ 
Sbjct:   831 SSCHILWAPADINLNRHLLSEI---------CNENFRLYKLKMMAKMEKYLHSSRCRRQI 881

Query:   303 ILESFGE-QI-PVSL----CKNSCDACK 324
             IL  F + Q+   SL     +  CD C+
Sbjct:   882 ILSHFEDKQLRKASLGIMGTEKCCDNCR 909


>UNIPROTKB|I3LC91 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0042981 "regulation of apoptotic process"
            evidence=IEA] [GO:0042803 "protein homodimerization activity"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
            "MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
            nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0030145 "manganese ion binding"
            evidence=IEA] [GO:0010259 "multicellular organismal aging"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0009267 "cellular response to starvation" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=IEA] [GO:0006284
            "base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
            evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
            DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
            GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
            Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
        Length = 1507

 Score = 474 (171.9 bits), Expect = 1.1e-43, P = 1.1e-43
 Identities = 114/328 (34%), Positives = 175/328 (53%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             + ED+  GK   R++Y+TPE  +  G +  L+ + +   + ++A+DEAHCIS WGHDFR 
Sbjct:   694 VLEDIKLGK--YRIVYLTPEFCS--GNLDLLQHLEANIGITVIAVDEAHCISEWGHDFRN 749

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
             S+R L SL++ LP VPI+ALTAT    +++D++  L L++P +  + F+RPNL+ EV  K
Sbjct:   750 SFRTLGSLKSALPLVPIVALTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLYLEVGRK 809

Query:   127 XXXXXXXXXXCSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
                         V K +     +   I+YC  R   ++++A L    ++C  YHAGL+  
Sbjct:   810 TGDILQDLKQFLVQKTSSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLACETYHAGLSIH 869

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R  V   ++    Q V+AT+AFGMGI++ D+R V H+  PK +E++YQE GRAGRD L 
Sbjct:   870 LRKQVHHKFMRDEIQCVIATIAFGMGINKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQ 929

Query:   243 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKK 302
             S   + +   D      +L              E      +   ++M  Y   S CRR+ 
Sbjct:   930 SSCHILWAPADINLNRHLLSEI---------CNENFRLYKLKMMAKMEKYLHSSRCRRQI 980

Query:   303 ILESFGE-QI-PVSL----CKNSCDACK 324
             IL  F + Q+   SL     +  CD C+
Sbjct:   981 ILSHFEDKQLRKASLGIMGTEKCCDNCR 1008


>WB|WBGene00006944 [details] [associations]
            symbol:wrn-1 species:6239 "Caenorhabditis elegans"
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040018 "positive regulation of
            multicellular organism growth" evidence=IMP] [GO:0010171 "body
            morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
            "response to ionizing radiation" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
            process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005662 "DNA replication factor A complex" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
            GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
            GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
            PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
            IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
            EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
            UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
            InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
        Length = 1056

 Score = 457 (165.9 bits), Expect = 3.6e-42, P = 3.6e-42
 Identities = 108/327 (33%), Positives = 170/327 (51%)

Query:     5 TKI-YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             T+I ++ + +    +R +Y++PE+  +   +  L        ++L+AIDEAHC+S WGHD
Sbjct:   302 TQIEWDQVANNMHRIRFIYMSPEMVTSQKGLELLTSCRKH--ISLLAIDEAHCVSQWGHD 359

Query:    64 FRPSYRKLSSLRNY--LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 121
             FR SYR L+ +RN   L ++P++ALTATA  +V+ DV+ +L L+ PL+  +SF+R NL+ 
Sbjct:   360 FRNSYRHLAEIRNRSDLCNIPMIALTATATVRVRDDVIANLRLRKPLITTTSFDRKNLYI 419

Query:   122 EVRYKXXXXXXXXXXCSVLKANGDTCA---IVYCLERTTCDELSAYLSAGGISCAAYHAG 178
              V                 +  G       I+YC  +   D+++  L   G+  A YHAG
Sbjct:   420 SVHSSKDMAEDLGLFMKTDEVKGRHFGGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAG 479

Query:   179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             L    R     D++  +   +VATVAFGMGID+ DVR V H+  P ++E++YQE GRAGR
Sbjct:   480 LTKNQREKAHTDFMRDKITTIVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGR 539

Query:   239 DQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGC 298
             D  PS   +++   D   ++F L             +E   +       Q+       GC
Sbjct:   540 DGSPSICRVFWAPKDLNTIKFKLRNS--------QQKEEVVENLTMMLRQLELVLTTVGC 591

Query:   299 RRKKILESFGEQI--PVSLCKNSCDAC 323
             RR ++L+ F      P ++  + CD C
Sbjct:   592 RRYQLLKHFDPSYAKPPTMQADCCDRC 618


>TIGR_CMR|SPO_0107 [details] [associations]
            symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
            recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
            OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
            GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
            ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
        Length = 679

 Score = 443 (161.0 bits), Expect = 2.0e-41, P = 2.0e-41
 Identities = 111/321 (34%), Positives = 163/321 (50%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             +++ L++G+  L+LLY+ PE  A+   M  L++I   G+ +L+A+DEAHC+S WGHDFRP
Sbjct:    98 VWQALEAGR--LKLLYMAPERLASGAAMGMLRRI---GV-SLIAVDEAHCVSQWGHDFRP 151

Query:    67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRY 125
              Y ++  LR  L  VP+ A TATA  + Q +++  L   + P      F+RPN+      
Sbjct:   152 DYLRIGELRRAL-GVPLAAFTATADAETQAEIVAKLFDGEEPRSFLRGFDRPNIHLAFAA 210

Query:   126 KXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
             K              +       IVYC  R   + L+  L   G S   YH G+  + R 
Sbjct:   211 KDSPRRQILDFAGARRGQS---GIVYCGTRAKTETLAQALREDGHSACHYHGGMEAEDRR 267

Query:   186 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 245
              V   +      +VVATVAFGMGID+ D+R V H ++PKS+EA+YQE GRAGRD  P+++
Sbjct:   268 IVETRFAREDGLIVVATVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRAGRDGGPAET 327

Query:   246 LLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILE 305
             L  +G DD R                 +  ER +    +  + ++   E   CRR+ +L 
Sbjct:   328 LTLFGPDDIRLRR-------SQIDEGLAPPERRAADH-ARLNALLGLAEAMTCRRQTLLG 379

Query:   306 SFGEQIPVSLCKNSCDACKHP 326
              FGE     +    CD C  P
Sbjct:   380 YFGE---TEITCGKCDLCDSP 397


>TIGR_CMR|BA_1505 [details] [associations]
            symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
            species:198094 "Bacillus anthracis str. Ames" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
            RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
            EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
            EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
            GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
            ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
            BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
        Length = 509

 Score = 385 (140.6 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 82/233 (35%), Positives = 135/233 (57%)

Query:    17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
             S + ++V+PE+  +   + +LKKIH    ++L  +DEAHCIS WG+DFRP Y+KL+ +  
Sbjct:   104 SYKFIFVSPEMLQSELLIRELKKIH----ISLFVVDEAHCISQWGYDFRPDYKKLNVVIE 159

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXX 136
              +    +LALTATA   V +D+ +SL L+       S +RPN+  +V++           
Sbjct:   160 NIGSPTVLALTATATKGVLQDIADSLNLKGAAEHVYSIDRPNIAMDVQFVETIEEKKEAL 219

Query:   137 CS-VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAA-YHAGLNDKARSSVLDDWISS 194
                V+   G    IVYC  R   + L+ YL   G++  A YH G+  + R  +   ++++
Sbjct:   220 LEQVMYLQGP--GIVYCSSRAWTERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNN 277

Query:   195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 247
             + Q+V+ T AFGMG+++ + R + HF+ P ++ ++ QE GRAGRD  PS ++L
Sbjct:   278 QLQLVICTSAFGMGVNKANTRYIIHFHYPTNIASYLQEIGRAGRDGEPSIAIL 330

 Score = 69 (29.3 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query:   280 KKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDAC 323
             +   S+   M  + +  GCRR+ +L+ FG +    L  N CD C
Sbjct:   431 RNKYSELENMKSWIQVKGCRREYVLQQFGYRKEQELM-NCCDYC 473


>RGD|1564788 [details] [associations]
            symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
            "Rattus norvegicus" [GO:0000287 "magnesium ion binding"
            evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
            "telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
            involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
            aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
            "DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
            activity" evidence=ISO] [GO:0004527 "exonuclease activity"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
            "ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
            process" evidence=ISO] [GO:0006260 "DNA replication"
            evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
            "double-strand break repair" evidence=ISO] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
            evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
            "3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
            "cellular response to starvation" evidence=ISO] [GO:0009378
            "four-way junction helicase activity" evidence=ISO] [GO:0010225
            "response to UV-C" evidence=ISO] [GO:0010259 "multicellular
            organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
            [GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
            "nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
            "protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
            unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
            evidence=ISO] [GO:0042803 "protein homodimerization activity"
            evidence=ISO] [GO:0042981 "regulation of apoptotic process"
            evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
            evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0051345 "positive regulation of
            hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
            binding" evidence=ISO] [GO:0071480 "cellular response to gamma
            radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
            SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
            GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
            GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
            SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
            GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
            GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
            GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
            Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
        Length = 1448

 Score = 448 (162.8 bits), Expect = 6.2e-41, P = 6.2e-41
 Identities = 104/293 (35%), Positives = 154/293 (52%)

Query:    46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105
             + L+A+DEAHCIS WGHDFR S+R L SL+  LP VP++AL+ATA+  +++D++  L L+
Sbjct:   674 ITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPVIALSATASSSIREDIIRCLNLK 733

Query:   106 NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG----DTCAIVYCLERTTCDEL 161
             +P +  + F+RPNL+ EV  K            V K +     +   I+YC  R   +++
Sbjct:   734 DPHITCTGFDRPNLYLEVERKTGNILQDLKPFLVRKTSSAWEFEGPTIIYCPSRKVTEQV 793

Query:   162 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 221
             +  L    ++C AYHAG+    R  +   ++    Q VVAT+AFGMGI++ D+R V H+ 
Sbjct:   794 TVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGINKADIRKVIHYG 853

Query:   222 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKK 281
              PK ME++YQE GRAGRD L S   L +   D       L              E+    
Sbjct:   854 APKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRNRLIEIH---------NEKFRLH 904

Query:   282 SISDFSQMVDYCEGSGCRRKKILESFGEQ------IPVSLCKNSCDACKHPNL 328
              +    +M  Y   S CRR+ IL  F ++      + V   +  CD C+ P L
Sbjct:   905 KLKMMVKMEKYLHSSRCRRQIILSHFEDKRLQKASLAVMGTEKCCDNCR-PRL 956


>TAIR|locus:2180255 [details] [associations]
            symbol:RECQSIM "RECQ helicase SIM" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
            helicase activity" evidence=IDA] [GO:0006270 "DNA replication
            initiation" evidence=RCA] [GO:0006275 "regulation of DNA
            replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
            InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
            TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
            HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
            IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
            ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
            EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
            TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
            OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
            Genevestigator:Q9FT69 Uniprot:Q9FT69
        Length = 858

 Score = 250 (93.1 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
 Identities = 65/175 (37%), Positives = 93/175 (53%)

Query:   149 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208
             I+Y   R     ++ YL   G+  AAY+A L  K    V  D+  ++ QVVVAT+AFGMG
Sbjct:   501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560

Query:   209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXX 268
             ID+K+VR + H+   +S+EA+YQE+GRAGRD   ++ +LY    D  R   +L       
Sbjct:   561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLYA---DLSRAPTLLPSRRS-- 615

Query:   269 XXXFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDAC 323
                   +   + K +SD  +       S CR K ++E FGE+     C NSCD C
Sbjct:   616 ----KEQTEQAYKMLSDCFRYG--MNTSQCRAKILVEYFGEEFSSKKC-NSCDVC 663

 Score = 233 (87.1 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
 Identities = 54/117 (46%), Positives = 73/117 (62%)

Query:    19 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NY 77
             +++YV PE       +  L+K+     + L AIDEAHC+S WGHDFRP YRKLS LR N+
Sbjct:   257 QIIYVCPETVVR--LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENF 314

Query:    78 LP--------DVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY 125
                       DVPI+ALTATA   VQ+D++ESL L     ++ +SF RPNL + V++
Sbjct:   315 CASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKH 371


>UNIPROTKB|Q47WD5 [details] [associations]
            symbol:CPS_4237 "RecQ domain protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
            evidence=ND] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
            GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
            ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
            KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
            ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
            Uniprot:Q47WD5
        Length = 690

 Score = 389 (142.0 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 80/213 (37%), Positives = 124/213 (58%)

Query:    46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105
             ++++ +DEAHCIS WGH+FRP Y KL S    L    +L LTATA  KV++D+     ++
Sbjct:   140 VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLLTATATRKVKQDMAAKFAIR 199

Query:   106 NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYL 165
             +  ++++ F R NL   V               ++ A      IVY   + + + ++ YL
Sbjct:   200 DEHIVQTGFYRSNLDLSV-LPVTQAHKNKQLEQIISAQ-QGAGIVYVTLQHSAETVAQYL 257

Query:   166 SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 225
                GI+  AYHAG +   RS +  D+++ + QV+VAT+AFGMGID+ ++R V H+++PKS
Sbjct:   258 KQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIRFVIHYDLPKS 317

Query:   226 MEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 258
             +E + QE GRAGRD LPS+      +D    +E
Sbjct:   318 IENYSQEIGRAGRDGLPSQCFTLANLDGLNTVE 350


>TIGR_CMR|CPS_4237 [details] [associations]
            symbol:CPS_4237 "RecQ domain protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
            GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
            ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
            KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
            ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
            Uniprot:Q47WD5
        Length = 690

 Score = 389 (142.0 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 80/213 (37%), Positives = 124/213 (58%)

Query:    46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105
             ++++ +DEAHCIS WGH+FRP Y KL S    L    +L LTATA  KV++D+     ++
Sbjct:   140 VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLLTATATRKVKQDMAAKFAIR 199

Query:   106 NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYL 165
             +  ++++ F R NL   V               ++ A      IVY   + + + ++ YL
Sbjct:   200 DEHIVQTGFYRSNLDLSV-LPVTQAHKNKQLEQIISAQ-QGAGIVYVTLQHSAETVAQYL 257

Query:   166 SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 225
                GI+  AYHAG +   RS +  D+++ + QV+VAT+AFGMGID+ ++R V H+++PKS
Sbjct:   258 KQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIRFVIHYDLPKS 317

Query:   226 MEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 258
             +E + QE GRAGRD LPS+      +D    +E
Sbjct:   318 IENYSQEIGRAGRDGLPSQCFTLANLDGLNTVE 350


>UNIPROTKB|Q8EEK1 [details] [associations]
            symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003674
            "molecular_function" evidence=ND] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
            ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
            PATRIC:23524381 Uniprot:Q8EEK1
        Length = 654

 Score = 363 (132.8 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 88/254 (34%), Positives = 138/254 (54%)

Query:     6 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++  +  SG+  L+LL V+ E      F   ++ I     L+++ +DEAHCIS WGH+FR
Sbjct:   107 QVMREARSGQ--LKLLMVSVERFKNERFRQFIQSIP----LSMLVVDEAHCISEWGHNFR 160

Query:    66 PSYRKLSSLRNYLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 124
             P Y KL      L  +P +L LTATA  KV++D+     ++   ++++ F R NL   V 
Sbjct:   161 PDYLKLPDYCREL-SIPLVLLLTATATRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVL 219

Query:   125 YKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 184
                           +   +G    IVY   + T +E+++ L + G    AYHAG +D  R
Sbjct:   220 PVASENKLRILKQQLQSFDG--AGIVYVTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKR 277

Query:   185 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
               +  D++  + Q+VVAT+AFGMGID+ ++R V H+++PKS+E + QE GRAGRD   S 
Sbjct:   278 QQIQHDFMLGQTQIVVATIAFGMGIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSH 337

Query:   245 SLLYYGMDDRRRME 258
              +    +D    +E
Sbjct:   338 CVTLANLDGINTVE 351


>TIGR_CMR|SO_2380 [details] [associations]
            symbol:SO_2380 "RecQ domain protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
            HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
            ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
            GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
        Length = 654

 Score = 363 (132.8 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 88/254 (34%), Positives = 138/254 (54%)

Query:     6 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
             ++  +  SG+  L+LL V+ E      F   ++ I     L+++ +DEAHCIS WGH+FR
Sbjct:   107 QVMREARSGQ--LKLLMVSVERFKNERFRQFIQSIP----LSMLVVDEAHCISEWGHNFR 160

Query:    66 PSYRKLSSLRNYLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 124
             P Y KL      L  +P +L LTATA  KV++D+     ++   ++++ F R NL   V 
Sbjct:   161 PDYLKLPDYCREL-SIPLVLLLTATATRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVL 219

Query:   125 YKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 184
                           +   +G    IVY   + T +E+++ L + G    AYHAG +D  R
Sbjct:   220 PVASENKLRILKQQLQSFDG--AGIVYVTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKR 277

Query:   185 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
               +  D++  + Q+VVAT+AFGMGID+ ++R V H+++PKS+E + QE GRAGRD   S 
Sbjct:   278 QQIQHDFMLGQTQIVVATIAFGMGIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSH 337

Query:   245 SLLYYGMDDRRRME 258
              +    +D    +E
Sbjct:   338 CVTLANLDGINTVE 351


>TAIR|locus:2029799 [details] [associations]
            symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
            to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
            evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
            [GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
            H3-K9 methylation" evidence=RCA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
            GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
            HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
            IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
            ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
            EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
            KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
            OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
            Genevestigator:Q0WVW7 Uniprot:Q0WVW7
        Length = 911

 Score = 360 (131.8 bits), Expect = 6.6e-32, P = 6.6e-32
 Identities = 90/240 (37%), Positives = 133/240 (55%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL--SSLR 75
             +++L+V+PE      F+S  +   S   ++LV +DEAHC+S W H+FRPSY +L  S L 
Sbjct:   359 IKVLFVSPERLLNVEFLSMFRMSLS---VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLF 415

Query:    76 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXX 135
             + L    ILA+TATA     + VM SL + +  +++ S  R N  +E+            
Sbjct:   416 SELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDN--FELSVSLSGANRMKD 473

Query:   136 XCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 192
                ++++         IVYC  +   D +S YL    I+   YH+GL  K R  + + + 
Sbjct:   474 LLILMESPPYKEIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFC 533

Query:   193 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252
             S++ +VVVATVAFGMG+D+ DV  V HF++P SME + QE GRAGRD   S   L+Y  D
Sbjct:   534 SNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDND 593


>UNIPROTKB|H9KZS5 [details] [associations]
            symbol:H9KZS5 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0043473 "pigmentation"
            evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
            cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
            evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
            InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
            Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
        Length = 252

 Score = 198 (74.8 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
 Identities = 39/71 (54%), Positives = 51/71 (71%)

Query:   173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 232
             AAYHAGL    R  V   ++  R +VVVATVAFGMG+D+ DVR V H+N+P++ E++ QE
Sbjct:   173 AAYHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQE 232

Query:   233 SGRAGRDQLPS 243
              GRAGRD  P+
Sbjct:   233 IGRAGRDGEPA 243

 Score = 104 (41.7 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query:    51 IDEAHCISSWGHDFRPSYRKLSSLRNYLP 79
             IDEAHCIS W H+FRPSY +L  +   LP
Sbjct:     4 IDEAHCISEWSHNFRPSYLRLCKVCEVLP 32

 Score = 53 (23.7 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
 Identities = 26/96 (27%), Positives = 38/96 (39%)

Query:    72 SSLRNYLPDVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPNLFYEVRYKXXX 129
             S LR+ L     LALTATA     +DV   L +  Q+ + ++ +   PNL   V  +   
Sbjct:    49 SVLRDRLGIRCFLALTATATVATARDVAAHLGIPQQDGIAVQCAAVPPNLQLSVSVEWDR 108

Query:   130 XXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYL 165
                        +       IVYC  R     ++A L
Sbjct:   109 DRALVNLLRSERFVALRSIIVYCTRREDTTRVAALL 144


>UNIPROTKB|J3KSL7 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR002464
            InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
            Uniprot:J3KSL7
        Length = 198

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 58/126 (46%), Positives = 86/126 (68%)

Query:     2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
             Q + ++  DL+  KP  ++LY+TPE+ A+  F   L  + SR LL+ + +DEAHC+S WG
Sbjct:    11 QERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWG 70

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLF 120
             HDFRP Y +L +LR+ L   P +ALTATA P+VQ+DV  +L L+ P+ + K+   R NLF
Sbjct:    71 HDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLF 130

Query:   121 YEVRYK 126
             Y+V++K
Sbjct:   131 YDVQFK 136


>UNIPROTKB|F1RMJ2 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
            Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
        Length = 511

 Score = 293 (108.2 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 70/166 (42%), Positives = 95/166 (57%)

Query:   165 LSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIP 223
             L   G++  AYHAGL+D AR  V   WI+    QV+ AT+AFGMGID+ DVR V H ++P
Sbjct:     5 LQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLP 64

Query:   224 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSI 283
             KS+E +YQESGRAGRD   S+ LL+Y   D  R++ ++            T+E       
Sbjct:    65 KSVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEKDGNHH---TKETH----F 117

Query:   284 SDFSQMVDYCEG-SGCRRKKILESFGE-QIPVSLCKN----SCDAC 323
             ++   MV YCE  + CRR ++L  FGE +   + CK     SCD C
Sbjct:   118 NNLYSMVHYCENIAECRRIQLLAYFGENEFNPNFCKKYPDVSCDNC 163


>UNIPROTKB|O94761 [details] [associations]
            symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
            "Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
            "DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
            renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
            "DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
            evidence=TAS] [GO:0007275 "multicellular organismal development"
            evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
            EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
            EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
            PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
            DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
            PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
            KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
            HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
            neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
            PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
            InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
            GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
            Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
            Pfam:PF11719 Uniprot:O94761
        Length = 1208

 Score = 279 (103.3 bits), Expect = 5.0e-23, P = 5.0e-23
 Identities = 79/247 (31%), Positives = 113/247 (45%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRN 76
             + +L +TPE     G +    ++     +    IDEAHC+S W H+FRP Y ++   LR 
Sbjct:   574 VHVLMLTPEALVGAGGLPPAAQLPP---VAFACIDEAHCLSQWSHNFRPCYLRVCKVLRE 630

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXX 135
              +     L LTATA  +   DV + L +     L      P NL   V            
Sbjct:   631 RMGVHCFLGLTATATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLT 690

Query:   136 XCSVLKANGDTCAIVYCLERTTCDELSAYL----------SAGG----ISCAAYHAGLND 181
                  +       I+YC  R   + ++A L           +GG     +  AYHAG+  
Sbjct:   691 LLQGKRFQNLDSIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCS 750

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R  V   ++  + +VVVATVAFGMG+DR DVR V H  +P S E++ Q  GRAGRD  
Sbjct:   751 RERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQ 810

Query:   242 PSKSLLY 248
             P+   L+
Sbjct:   811 PAHCHLF 817


>UNIPROTKB|F1RSP7 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
            EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
        Length = 1204

 Score = 277 (102.6 bits), Expect = 8.1e-23, P = 8.1e-23
 Identities = 82/247 (33%), Positives = 115/247 (46%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRN 76
             +++L ++PE  A  G  + L  +     +    IDEAHC+S W H+FRP Y ++   LR 
Sbjct:   581 VQVLMLSPEALAGAG-AAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRE 639

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXX 135
              +     L LTATA      DV + L +    VL+     P NL   V            
Sbjct:   640 RVGVSCFLGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVT 699

Query:   136 XCSVLKANGDTCAIVYCLERTTCDELSAYLSA----------GGIS----CAAYHAGLND 181
                  +       I+YC  R   + ++A L            GG +      AYHAG+  
Sbjct:   700 LLQSDRFCALDSIIIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCS 759

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R  V   ++  R +VVVATVAFGMG+DR DVR V H  +P S E++ Q  GRAGRD  
Sbjct:   760 RERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQ 819

Query:   242 PSKSLLY 248
             P+   L+
Sbjct:   820 PAHCHLF 826


>UNIPROTKB|K7GSZ9 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
            Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
        Length = 1209

 Score = 277 (102.6 bits), Expect = 8.2e-23, P = 8.2e-23
 Identities = 82/247 (33%), Positives = 115/247 (46%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRN 76
             +++L ++PE  A  G  + L  +     +    IDEAHC+S W H+FRP Y ++   LR 
Sbjct:   586 VQVLMLSPEALAGAG-AAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRE 644

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXX 135
              +     L LTATA      DV + L +    VL+     P NL   V            
Sbjct:   645 RVGVSCFLGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVT 704

Query:   136 XCSVLKANGDTCAIVYCLERTTCDELSAYLSA----------GGIS----CAAYHAGLND 181
                  +       I+YC  R   + ++A L            GG +      AYHAG+  
Sbjct:   705 LLQSDRFCALDSIIIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCS 764

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R  V   ++  R +VVVATVAFGMG+DR DVR V H  +P S E++ Q  GRAGRD  
Sbjct:   765 RERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQ 824

Query:   242 PSKSLLY 248
             P+   L+
Sbjct:   825 PAHCHLF 831


>UNIPROTKB|F1RV44 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
            [GO:0045875 "negative regulation of sister chromatid cohesion"
            evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
            "positive regulation of cell proliferation" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
            GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
            GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
            OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
        Length = 1227

 Score = 277 (102.6 bits), Expect = 8.4e-23, P = 8.4e-23
 Identities = 82/247 (33%), Positives = 115/247 (46%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRN 76
             +++L ++PE  A  G  + L  +     +    IDEAHC+S W H+FRP Y ++   LR 
Sbjct:   604 VQVLMLSPEALAGAG-AAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRE 662

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXX 135
              +     L LTATA      DV + L +    VL+     P NL   V            
Sbjct:   663 RVGVSCFLGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVT 722

Query:   136 XCSVLKANGDTCAIVYCLERTTCDELSAYLSA----------GGIS----CAAYHAGLND 181
                  +       I+YC  R   + ++A L            GG +      AYHAG+  
Sbjct:   723 LLQSDRFCALDSIIIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCS 782

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R  V   ++  R +VVVATVAFGMG+DR DVR V H  +P S E++ Q  GRAGRD  
Sbjct:   783 RERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQ 842

Query:   242 PSKSLLY 248
             P+   L+
Sbjct:   843 PAHCHLF 849


>UNIPROTKB|Q4JNX8 [details] [associations]
            symbol:RTS "RECQL4-helicase-like protein" species:8355
            "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
            initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
            GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
            Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
            ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
            Uniprot:Q4JNX8
        Length = 1500

 Score = 186 (70.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 38/88 (43%), Positives = 60/88 (68%)

Query:   174 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 233
             +YHAG++   R  V ++++  + ++VVATVAFGMG+D+ DVR + H+N+PK+ E++ QE 
Sbjct:  1019 SYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEI 1078

Query:   234 GRAGRDQLPSKSLLYYG-----MDDRRR 256
             GRAGRD   ++  L+       MD+ RR
Sbjct:  1079 GRAGRDGKDAQCHLFLDPEGQDMDELRR 1106

 Score = 160 (61.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 60/199 (30%), Positives = 89/199 (44%)

Query:     9 EDLDSGKPSLRLLYVTPELTATPGFM--SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             E +  GK  + +L ++PE     GF   S L        +    IDEAHC+S W H+FRP
Sbjct:   813 EKVKQGK--VHVLLLSPEALVGGGFSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRP 870

Query:    67 SYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPNLFYEV 123
              Y +L   LR  L    +L LTATA     +DV   L +  +  + ++ +   PNL   V
Sbjct:   871 CYLRLCKVLRERLGVNCLLGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNLHLSV 930

Query:   124 RYKXXXXXXXXXXCSVLKANGDTC---AIVYCLERTTCDELSAYL--SAGGISCAAYHAG 178
                           ++LK     C    IVYC  R     +SA L  S  G++ +A ++ 
Sbjct:   931 ---SMDRNRDQALVTLLKGERFGCLDSVIVYCTRREETQRISALLRTSLQGVTVSA-NSH 986

Query:   179 LNDKARSSVLDDWISSRKQ 197
             LN + +    D  +S RK+
Sbjct:   987 LNSQEQE---DTTVSDRKK 1002


>UNIPROTKB|Q33DM4 [details] [associations]
            symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
            [GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
            binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
            evidence=IMP] [GO:0035563 "positive regulation of chromatin
            binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
            GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
            Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
            HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
            EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
            ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
            Xenbase:XB-GENE-997817 Uniprot:Q33DM4
        Length = 1503

 Score = 186 (70.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 38/88 (43%), Positives = 60/88 (68%)

Query:   174 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 233
             +YHAG++   R  V ++++  + ++VVATVAFGMG+D+ DVR + H+N+PK+ E++ QE 
Sbjct:  1022 SYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEI 1081

Query:   234 GRAGRDQLPSKSLLYYG-----MDDRRR 256
             GRAGRD   ++  L+       MD+ RR
Sbjct:  1082 GRAGRDGKDAQCHLFLDPEGQDMDELRR 1109

 Score = 160 (61.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 60/199 (30%), Positives = 89/199 (44%)

Query:     9 EDLDSGKPSLRLLYVTPELTATPGFM--SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
             E +  GK  + +L ++PE     GF   S L        +    IDEAHC+S W H+FRP
Sbjct:   816 EKVKQGK--VHVLLLSPEALVGGGFSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRP 873

Query:    67 SYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPNLFYEV 123
              Y +L   LR  L    +L LTATA     +DV   L +  +  + ++ +   PNL   V
Sbjct:   874 CYLRLCKVLRERLGVNCLLGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNLHLSV 933

Query:   124 RYKXXXXXXXXXXCSVLKANGDTC---AIVYCLERTTCDELSAYL--SAGGISCAAYHAG 178
                           ++LK     C    IVYC  R     +SA L  S  G++ +A ++ 
Sbjct:   934 ---SMDRNRDQALVTLLKGERFGCLDSVIVYCTRREETQRISALLRTSLQGVTVSA-NSH 989

Query:   179 LNDKARSSVLDDWISSRKQ 197
             LN + +    D  +S RK+
Sbjct:   990 LNSQEQE---DTTVSDRKK 1005


>UNIPROTKB|F1RMJ3 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
            PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
            Uniprot:F1RMJ3
        Length = 541

 Score = 273 (101.2 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 52/106 (49%), Positives = 72/106 (67%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             T IY  L    P ++LLYVTPE + A+   +S L+ +++R LL    IDEAHC+S WGHD
Sbjct:   436 TSIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYNRKLLARFVIDEAHCVSQWGHD 495

Query:    64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV 109
             FRP Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V
Sbjct:   496 FRPDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV 541


>MGI|MGI:1931028 [details] [associations]
            symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
            strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
            "DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
            [GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
            regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
            morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
            GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
            Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
            KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
            EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
            RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
            SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
            PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
            KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
            Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
            GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
        Length = 1216

 Score = 273 (101.2 bits), Expect = 6.6e-22, P = 6.6e-22
 Identities = 77/214 (35%), Positives = 102/214 (47%)

Query:    51 IDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV 109
             IDE HC+S W H+FRP Y ++   LR ++     L LTATA     +DV + L +     
Sbjct:   626 IDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAGEFE 685

Query:   110 LKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCL-ERTTCDELSAY--- 164
             L  S N P NL   V                 +       I+YC  ER     L+     
Sbjct:   686 LSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRERIQNGWLALLRTC 745

Query:   165 LSAGGIS----CA------AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 214
             LS  G S    C       AYHAG++ + R  V   ++    ++VVATVAFGMG+DR DV
Sbjct:   746 LSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDV 805

Query:   215 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248
             R V H  +P S E++ Q  GRAGRD  P+   L+
Sbjct:   806 RAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839


>RGD|1307732 [details] [associations]
            symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
            norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
            [GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
            "skeletal system development" evidence=ISO] [GO:0003674
            "molecular_function" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
            replication" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
            regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
            "DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
            "pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
            of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
            "skeletal system morphogenesis" evidence=IEA;ISO]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
            IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
            ArrayExpress:D4A5W5 Uniprot:D4A5W5
        Length = 1216

 Score = 273 (101.2 bits), Expect = 6.6e-22, P = 6.6e-22
 Identities = 73/214 (34%), Positives = 102/214 (47%)

Query:    51 IDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV 109
             IDE HC+S W H+FRP Y ++   LR ++     L LTATA     +DV + L +   L 
Sbjct:   626 IDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAEELE 685

Query:   110 LKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSA- 167
             +  S + P NL   V                 +       I+YC  R   + ++A L   
Sbjct:   686 VSGSASIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSIIIYCARRKDTERVAALLRTC 745

Query:   168 ------------GGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 214
                         G  + A AYHAG+  + R  V   ++    ++VVATVAFGMG+DR DV
Sbjct:   746 LSTVRDSKPRGRGPETLAEAYHAGMCSQERKRVQQAFMQGHLRMVVATVAFGMGLDRPDV 805

Query:   215 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248
             R V H  +P S E++ Q  GRAGRD  P+   L+
Sbjct:   806 RAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839


>FB|FBgn0040290 [details] [associations]
            symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
            helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
            ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
            evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
            [GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
            "positive regulation of cell proliferation" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
            regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
            regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
            [GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
            division" evidence=IMP] [GO:0002164 "larval development"
            evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
            evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
            [GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
            "mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
            GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
            GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
            GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
            GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
            UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
            PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
            KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
            OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
            ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
        Length = 1579

 Score = 195 (73.7 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
 Identities = 36/74 (48%), Positives = 54/74 (72%)

Query:   175 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 234
             YHAG+    R +V   ++S+  ++VVAT+AFGMGI++ D+R V H+N+P++ E++ QE G
Sbjct:  1143 YHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIG 1202

Query:   235 RAGRDQLPSKSLLY 248
             RAGRD LPS   L+
Sbjct:  1203 RAGRDGLPSHCHLF 1216

 Score = 137 (53.3 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
 Identities = 44/169 (26%), Positives = 75/169 (44%)

Query:     4 KTKIYEDLDSGKPSLRLLYVTPELTAT----PGFMSKLKKIHSRGLLNLVAIDEAHCISS 59
             + KI + + +G+  + +L V+PE         GF + L+++     +    IDEAHC+S 
Sbjct:   952 RMKIQQMIANGE--IDILLVSPEAVVAGERATGFGAILRQLPP---IAFACIDEAHCVSQ 1006

Query:    60 WGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRP 117
             W H+FRPSY  +   LR  L    +L LTATA    +  ++  L + +    + S    P
Sbjct:  1007 WSHNFRPSYLMICKVLRKNLGVRTVLGLTATATLPTRVSIINHLGISDGERGIISDIPLP 1066

Query:   118 -NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYL 165
              NL   V              +  +       I+YC  R  C+ ++ ++
Sbjct:  1067 DNLVLSVSKDENRDAALLQLLNSERFEPCQSIIIYCTRRDECERIAGFI 1115


>UNIPROTKB|A5D786 [details] [associations]
            symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
            [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
            [GO:0045875 "negative regulation of sister chromatid cohesion"
            evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
            "positive regulation of cell proliferation" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
            GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
            HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
            InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
            EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
            UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
            GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
            Uniprot:A5D786
        Length = 1218

 Score = 270 (100.1 bits), Expect = 3.7e-21, P = 3.7e-21
 Identities = 81/247 (32%), Positives = 113/247 (45%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-RKLSSLRN 76
             +++L ++PE     G  + L ++     +    +DEAHC+S W H+FRP Y R   +LR+
Sbjct:   588 VQVLMLSPEALVGAGASTLLSQLPP---VAFACLDEAHCLSQWSHNFRPCYLRVCQTLRD 644

Query:    77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXX 135
              +     L LTATA      DV   L +    VL+     P NL   V            
Sbjct:   645 QMGVHCFLGLTATATRSTALDVAWHLGVTEESVLRGPATIPDNLHLSVSSDRDPDQALVT 704

Query:   136 XCSVLKANGDTCAIVYCLERTTCDELSAYLSA--------GGISCA------AYHAGLND 181
                  +       I+YC  R   + ++A L          G    A      AYHAGL  
Sbjct:   705 LLRSDRFRALGSVIIYCHRREDTERVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCS 764

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R  V   ++  R ++VVATVAFGMG+DR DVR V H  +P S E + Q  GRAGRD  
Sbjct:   765 RERRRVQRAFMEGRLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQ 824

Query:   242 PSKSLLY 248
             P+   L+
Sbjct:   825 PAHCHLF 831


>UNIPROTKB|Q47ZX4 [details] [associations]
            symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
            ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
            KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
            ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
            Uniprot:Q47ZX4
        Length = 843

 Score = 248 (92.4 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 67/255 (26%), Positives = 130/255 (50%)

Query:     4 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             K++I +++D+ K   ++++ +PE + T   +  L ++  +  +  + IDEAH I +WG +
Sbjct:   237 KSEIRDNIDNDKQ--KVIFTSPE-SVTGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGSN 293

Query:    64 FRPSYRKLSSLRNYLPDV---PI--LALTATAAPKVQKDVMESLCLQN--PLVLKSSFNR 116
             FR  +++  +L   L  V   P   + ++AT        +    C  +  P+V+  +F R
Sbjct:   294 FRSEFQRFGALVASLRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVVNGNFLR 353

Query:   117 PNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
             P +    + +            V+ A      +   L + + D LS +L A G++  A  
Sbjct:   354 PEISSSYKNEGENNHLQSVVGRVI-ALPKPLILYTTLVQDSID-LSCHLKAIGLNRIALF 411

Query:   177 AGLND-KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 235
              G  D ++R  +++ W      +++AT AFG+G+D+ +V+ V H  IP +++ +YQE GR
Sbjct:   412 NGKTDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGR 471

Query:   236 AGRD-QLPSKSLLYY 249
             AGRD +  +  ++YY
Sbjct:   472 AGRDGEAATSEVIYY 486


>TIGR_CMR|CPS_2945 [details] [associations]
            symbol:CPS_2945 "putative DEAD/DEAH box helicase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
            ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
            KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
            ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
            Uniprot:Q47ZX4
        Length = 843

 Score = 248 (92.4 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 67/255 (26%), Positives = 130/255 (50%)

Query:     4 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
             K++I +++D+ K   ++++ +PE + T   +  L ++  +  +  + IDEAH I +WG +
Sbjct:   237 KSEIRDNIDNDKQ--KVIFTSPE-SVTGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGSN 293

Query:    64 FRPSYRKLSSLRNYLPDV---PI--LALTATAAPKVQKDVMESLCLQN--PLVLKSSFNR 116
             FR  +++  +L   L  V   P   + ++AT        +    C  +  P+V+  +F R
Sbjct:   294 FRSEFQRFGALVASLRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVVNGNFLR 353

Query:   117 PNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
             P +    + +            V+ A      +   L + + D LS +L A G++  A  
Sbjct:   354 PEISSSYKNEGENNHLQSVVGRVI-ALPKPLILYTTLVQDSID-LSCHLKAIGLNRIALF 411

Query:   177 AGLND-KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 235
              G  D ++R  +++ W      +++AT AFG+G+D+ +V+ V H  IP +++ +YQE GR
Sbjct:   412 NGKTDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGR 471

Query:   236 AGRD-QLPSKSLLYY 249
             AGRD +  +  ++YY
Sbjct:   472 AGRDGEAATSEVIYY 486


>UNIPROTKB|J3KRM6 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
            PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
            EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
            Uniprot:J3KRM6
        Length = 118

 Score = 193 (73.0 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/93 (43%), Positives = 54/93 (58%)

Query:   205 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXX 264
             FGMG+D+ +VR V H+NI KSM  +YQESGRAGRD  PS   LYY  +DR ++ F++   
Sbjct:     2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 61

Query:   265 XXXXXXXFSTRERSSKKSISDFSQMVDYCEGSG 297
                       +  S K +I  F  +V +CE  G
Sbjct:    62 VAKLQEKRGNKA-SDKATIMAFDALVTFCEELG 93


>ASPGD|ASPL0000073665 [details] [associations]
            symbol:AN5092 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
            RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
            EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
            HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
        Length = 1571

 Score = 219 (82.2 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 75/251 (29%), Positives = 119/251 (47%)

Query:    20 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 79
             ++ VTPE T  P F + L +      L+ + IDE H I +   DF+P+  +L  L +   
Sbjct:   998 IVLVTPESTENPDFHTFLNRQRQMRRLDRIVIDECHVILNDQKDFQPAMARLGRLVS--A 1055

Query:    80 DVPILALTATAAPKVQKDVMESLCLQNPLV--LKSSFNRPNLFYE-VRYKXXXXXXXXXX 136
                ++ LTA   P  +   +  +  Q   V   ++  +R N+ Y  VR            
Sbjct:  1056 QTQLVFLTAMLPPIEEARFLRRIKHQRSEVGIHRARTSRRNVAYRMVRPSLPRGVPRKPH 1115

Query:   137 CSVLKAN------------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 184
               + + N            GD   IVY   ++  D +S  L      C AYH+ + D+  
Sbjct:  1116 QWLTQPNVRGFIQQRIQQAGDGQVIVYANIKSQVDAISCELG-----CEAYHSAVLDQ-- 1168

Query:   185 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
             + V+  + SS+ +++ AT A GMGID  D+R V H   P+++  + QESGRAGRD L SK
Sbjct:  1169 TGVMQRFQSSQTRIIAATSALGMGIDIPDIRCVIHLGRPRTLLDYSQESGRAGRDGLASK 1228

Query:   245 SLLYY--GMDD 253
             +++ +  G DD
Sbjct:  1229 AVIVHPQGWDD 1239

 Score = 134 (52.2 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 42/150 (28%), Positives = 70/150 (46%)

Query:   184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
             ++ V+  + SS+ +++ AT A GMGID  D+R V H   P+++  + QESGRAGRD L S
Sbjct:  1168 QTGVMQRFQSSQTRIIAATSALGMGIDIPDIRCVIHLGRPRTLLDYSQESGRAGRDGLAS 1227

Query:   244 KSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQMVDYCEGSGCRR--- 300
             K+++ +         ++               +R S          ++  EG GCRR   
Sbjct:  1228 KAVIVHPQGWDDLDPWV---------------DRVSDAEFEHIQAYMEVVEGVGCRRYVL 1272

Query:   301 KKILESFGEQIPVSLCKNS------CDACK 324
              + L+   +      C++       CDAC+
Sbjct:  1273 DQYLDGTVDGYTRQQCQDQDPDKLPCDACR 1302


>POMBASE|SPBCPT2R1.08c [details] [associations]
            symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
            "Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
            recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
            region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
            GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
            EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
            EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
            NextBio:20892152 Uniprot:Q1RKN3
        Length = 1919

 Score = 190 (71.9 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 64/249 (25%), Positives = 118/249 (47%)

Query:    11 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             L++  P L +L  T E   T   +   + + + G L  V IDEAH + + G  +R +  +
Sbjct:  1283 LETQLPDLFIL--TYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSGA-WRTALSR 1339

Query:    71 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXX 130
              S L       P+  L+AT   +++    ++ C    ++ ++S  R N+FY + +     
Sbjct:  1340 ASRLSGLY--APLHLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFL-HPYDNT 1396

Query:   131 XXXXXXCSVLKAN----GDTCAIVYCLERTTCDELSAYLSAGGISC----AAYHAGLNDK 182
                    +++K      GD  AI++C  +   + +   L    +        Y   ++D+
Sbjct:  1397 EFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDE 1456

Query:   183 ARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240
              R    D +   + + ++++AT AFG+GI+   VRLV H+ +P S   + QE+GRAGRD 
Sbjct:  1457 ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDG 1516

Query:   241 LPSKSLLYY 249
               + + L+Y
Sbjct:  1517 KYAIAALFY 1525


>POMBASE|SPAC212.11 [details] [associations]
            symbol:tlh1 "RecQ type DNA helicase" species:4896
            "Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
            recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
            region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
            GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
            GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
            ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
            OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
        Length = 2100

 Score = 190 (71.9 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 64/249 (25%), Positives = 118/249 (47%)

Query:    11 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             L++  P L +L  T E   T   +   + + + G L  V IDEAH + + G  +R +  +
Sbjct:  1464 LETQLPDLFIL--TYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSGA-WRTALSR 1520

Query:    71 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXX 130
              S L       P+  L+AT   +++    ++ C    ++ ++S  R N+FY + +     
Sbjct:  1521 ASRLSGLY--APLHLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFL-HPYDNT 1577

Query:   131 XXXXXXCSVLKAN----GDTCAIVYCLERTTCDELSAYLSAGGISC----AAYHAGLNDK 182
                    +++K      GD  AI++C  +   + +   L    +        Y   ++D+
Sbjct:  1578 EFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDE 1637

Query:   183 ARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240
              R    D +   + + ++++AT AFG+GI+   VRLV H+ +P S   + QE+GRAGRD 
Sbjct:  1638 ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDG 1697

Query:   241 LPSKSLLYY 249
               + + L+Y
Sbjct:  1698 KYAIAALFY 1706


>FB|FBgn0001942 [details] [associations]
            symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
            "Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0006413 "translational initiation"
            evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
            factor 4F complex" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
            evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
            ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
            unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
            cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
            [GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
            "instar larval development" evidence=TAS] [GO:0009950
            "dorsal/ventral axis specification" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
            [GO:0007052 "mitotic spindle organization" evidence=IMP]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
            damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
            cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
            maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
            [GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
            organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
            GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
            GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
            GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
            GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
            EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
            RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
            RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
            ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
            MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
            EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
            EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
            EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
            KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
            InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
            GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
            Uniprot:Q02748
        Length = 403

 Score = 173 (66.0 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 61/243 (25%), Positives = 111/243 (45%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG +  +  +K+     + L  +DEA  + S G  F+   + +  +    PDV ++
Sbjct:   152 VVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRG--FKDQIQDVFKMLP--PDVQVI 207

Query:    85 ALTATAAPKVQKDVME-SLC-LQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXC 137
              L+AT  P    DV+E S C +++P   LV K       +  FY V  K          C
Sbjct:   208 LLSATMPP----DVLEVSRCFMRDPVSILVKKEELTLEGIKQFY-VNVKQENWKLGTL-C 261

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
              +      T ++++C  R   D+L+  +S    + +A H  +  + R  ++  + S   +
Sbjct:   262 DLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSR 321

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257
             V++ T     GID + V LV ++++P + E +    GR GR      ++ +   DDRR +
Sbjct:   322 VLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRIL 381

Query:   258 EFI 260
             + I
Sbjct:   382 KDI 384


>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
            symbol:PFL1310c "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
            metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
            ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
            EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
            EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
            Uniprot:Q8I5E7
        Length = 742

 Score = 173 (66.0 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 59/235 (25%), Positives = 103/235 (43%)

Query:    27 LTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81
             + ATPG   +L      G +NL     V IDEA  +   G  F    RK+ +  N   + 
Sbjct:   481 IVATPG---RLLDFLENGNINLLKCIYVVIDEADRLLDMG--FEKQLRKIMTQVN--KNK 533

Query:    82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVL- 140
              +L LTAT   +V+K +    C  +P+ ++   N       +               +L 
Sbjct:   534 QLLFLTATWPEQVRK-LAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLD 592

Query:   141 --KANGDTCAI-VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
               K N +   I ++C  +  CD L   L     +  + H     + R  +L+++ + R  
Sbjct:   593 WLKENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCN 652

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252
             ++VAT     G+D K++ +V +++IP ++E +    GR GR     KS+L++  D
Sbjct:   653 ILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYD 707


>TAIR|locus:2084178 [details] [associations]
            symbol:DRH1 "DEAD box RNA helicase 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
            PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
            SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
            EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
            EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
            PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
            RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
            ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
            PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
            EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
            KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
            OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
            Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
        Length = 619

 Score = 163 (62.4 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 70/264 (26%), Positives = 116/264 (43%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPGFMS---KLKKIHSRGLLNLVAIDEAHCISSW 60
             T +Y     G P LR L    ++  ATPG ++   ++++I  R +  LV +DEA  +   
Sbjct:   262 TCLYGGAPKG-PQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLV-LDEADRMLDM 319

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF 120
             G  F P  RK+  ++        L  TAT  PK  + +   L L NP    +  N  N+ 
Sbjct:   320 G--FEPQIRKI--VKEIPTKRQTLMYTATW-PKGVRKIAADL-LVNP----AQVNIGNVD 369

Query:   121 YEVRYKXXXXXXXXXXC--------SVLKANGD-TCAIVYCLERTTCDELSAYLSAGGIS 171
               V  K                    +L++    +  I++C  +  CD+L+  L+     
Sbjct:   370 ELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FG 428

Query:   172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 231
              AA H   +   R +VL+ + S R  V+VAT     G+D KD+R V +++ P  +E +  
Sbjct:   429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488

Query:   232 ESGRAGRDQLPSKSLLYYGMDDRR 255
               GR GR     ++  ++G  D +
Sbjct:   489 RIGRTGRAGATGQAFTFFGDQDSK 512


>TAIR|locus:2035741 [details] [associations]
            symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
            IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
            UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
            PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
            KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
            OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
            Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
        Length = 501

 Score = 161 (61.7 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 63/245 (25%), Positives = 112/245 (45%)

Query:     2 QVKTK-IYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLVAIDEAHCI 57
             ++KT  IY  +  G P +R L    E+  ATPG +  + + ++  L  +  + +DEA  +
Sbjct:   200 KIKTTCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRM 258

Query:    58 SSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFN 115
                G D  P  RK+ S  +  PD   L  +AT   +V++  +    L NP  +++ SS  
Sbjct:   259 LDMGFD--PQIRKIVS--HIRPDRQTLYWSATWPKEVEQ--LSKKFLYNPYKVIIGSSDL 312

Query:   116 RPN-LFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE-RTTCDELSAYLSAGGISCA 173
             + N    ++               +L+   D   I+  L+ +  CD+++  L   G    
Sbjct:   313 KANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPAL 372

Query:   174 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 233
             + H   +   R  VL ++ S +  ++ AT     G+D KDV+ V +++ P S+E +    
Sbjct:   373 SIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRI 432

Query:   234 GRAGR 238
             GR GR
Sbjct:   433 GRTGR 437


>CGD|CAL0003204 [details] [associations]
            symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
            EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
            ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
            GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
            Uniprot:Q59LU0
        Length = 562

 Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 64/253 (25%), Positives = 106/253 (41%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWG 61
             T +Y     G P +R L    E+  ATPG +  + +     L  +  + +DEA  +   G
Sbjct:   232 TCVYGGAPKG-PQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMG 290

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC--LQ---NPLVLKSSFNR 116
               F P  RK+  +    PD   L  +AT   +VQ+   + L   +Q     L L +S   
Sbjct:   291 --FEPQIRKI--VDQIRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTI 346

Query:   117 PNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
               L   +              S L    D   +V+   + TCDE++ YL + G    A H
Sbjct:   347 TQLVEVIDEFSKRDRLVKHLESALNEK-DNKILVFASTKRTCDEITTYLRSDGWPALAIH 405

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                    R  VLD++   +  ++VAT     GID K +  V ++++P ++E +    GR 
Sbjct:   406 GDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRT 465

Query:   237 GRDQLPSKSLLYY 249
             GR      ++ ++
Sbjct:   466 GRGGASGTAISFF 478


>UNIPROTKB|Q8EDC4 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 154 (59.3 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 54/233 (23%), Positives = 101/233 (43%)

Query:    27 LTATPGFMS---KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 83
             + ATPG ++   + K +   GL  L+ +DEA  +   G  F P  + ++   ++     +
Sbjct:   127 IVATPGRIADHLEQKNLFLNGL-ELLILDEADRMLDLG--FAPQLKAINEAADHKRRQTL 183

Query:    84 LALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVL 140
             +  +AT       ++  +L L+NPL   +  +     ++   +               +L
Sbjct:   184 M-FSATLDHSEINEIAAAL-LKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRLL 241

Query:   141 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200
                     I++   R   + L+A LSA G + AA    L   AR+ ++D +   ++Q++V
Sbjct:   242 SDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILV 301

Query:   201 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
              T     G+D  +V LV +F++PK  E +    GR GR      ++   G  D
Sbjct:   302 TTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKD 354


>TIGR_CMR|SO_2838 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 154 (59.3 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 54/233 (23%), Positives = 101/233 (43%)

Query:    27 LTATPGFMS---KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 83
             + ATPG ++   + K +   GL  L+ +DEA  +   G  F P  + ++   ++     +
Sbjct:   127 IVATPGRIADHLEQKNLFLNGL-ELLILDEADRMLDLG--FAPQLKAINEAADHKRRQTL 183

Query:    84 LALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVL 140
             +  +AT       ++  +L L+NPL   +  +     ++   +               +L
Sbjct:   184 M-FSATLDHSEINEIAAAL-LKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRLL 241

Query:   141 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200
                     I++   R   + L+A LSA G + AA    L   AR+ ++D +   ++Q++V
Sbjct:   242 SDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILV 301

Query:   201 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
              T     G+D  +V LV +F++PK  E +    GR GR      ++   G  D
Sbjct:   302 TTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKD 354


>UNIPROTKB|A4RN46 [details] [associations]
            symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
            PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
            "mycelium development" evidence=IEP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
            ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
            KEGG:mgr:MGG_15532 Uniprot:A4RN46
        Length = 1012

 Score = 158 (60.7 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 57/223 (25%), Positives = 98/223 (43%)

Query:    27 LTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81
             + AT G M  L   +   +++L     + +DEA  +   G  F P   K+ +  N  PD 
Sbjct:   505 VVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMG--FEPQVMKIFA--NVRPDR 560

Query:    82 PILALTATAAPKVQKDVMESLCLQNPLVL----KSSF-NRPNLFYEVR-YKXXXXXXXXX 135
               +  +AT  PK+  D +    L+NP+ +    KS   +      E+R  K         
Sbjct:   561 QTVLFSATM-PKIM-DALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLEL 618

Query:   136 XCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 195
                + K + D  ++++   +   DEL   L   G  C + H G +   R S + D+ S  
Sbjct:   619 LGELYKDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGV 678

Query:   196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
               V++AT     G+D K ++LV +++ P  +E +   +GR GR
Sbjct:   679 CPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGR 721


>TAIR|locus:2222617 [details] [associations]
            symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
            PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
            Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
            ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
            EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
            OMA:YLIPGFM Uniprot:F4K6V1
        Length = 712

 Score = 155 (59.6 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 65/242 (26%), Positives = 107/242 (44%)

Query:    27 LTATPGFMS---KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-P 82
             + ATPG ++   ++K+I    +  LV +DEA  +   G  F P  RK+    N +P    
Sbjct:   355 VVATPGRLNDILEMKRISLHQVSYLV-LDEADRMLDMG--FEPQIRKIV---NEVPTKRQ 408

Query:    83 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC----- 137
              L  TAT   +V+K +   L L NP    +  N  N+   V  K                
Sbjct:   409 TLMYTATWPKEVRK-IAADL-LVNP----AQVNIGNVDELVANKSITQTIEVLAPMEKHS 462

Query:   138 ---SVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193
                 +L++    +  I++C  +  CD+L+  L+      AA H   +   R  VL+ + S
Sbjct:   463 RLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRS 521

Query:   194 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
              R  V+VAT     G+D KD+R+V +++ P  +E +    GR GR      +  ++G  D
Sbjct:   522 GRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581

Query:   254 RR 255
              +
Sbjct:   582 AK 583


>SGD|S000005056 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
            protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
            "nuclear polyadenylation-dependent mRNA catabolic process"
            evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
            ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
            "rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
            RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
            SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
            STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
            GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
            CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
            Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
        Length = 546

 Score = 152 (58.6 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 53/217 (24%), Positives = 96/217 (44%)

Query:    29 ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 86
             ATPG +  + +I    L  +  + +DEA  +   G  F P  RK+  +    PD   L  
Sbjct:   242 ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMW 297

Query:    87 TATAAPKVQK---DVM-ESLCLQ-NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLK 141
             +AT   +V++   D + + + +Q   L L +S N   +  EV                  
Sbjct:   298 SATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIV-EVVSDFEKRDRLNKYLETAS 356

Query:   142 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 201
              + +   +++   +  CD+++ YL   G    A H   + + R  VL ++ + R  ++VA
Sbjct:   357 QDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVA 416

Query:   202 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             T     GID K +  V ++++P ++E +    GR GR
Sbjct:   417 TDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGR 453


>TAIR|locus:2162022 [details] [associations]
            symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
            EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
            IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
            UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
            PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
            KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
            OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
            Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
        Length = 591

 Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 63/257 (24%), Positives = 109/257 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWG 61
             T IY     G P +R L    E+  ATPG +  + +     L  +  + +DEA  +   G
Sbjct:   270 TCIYGGAPKG-PQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMG 328

Query:    62 HDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL- 119
               F P  RK+ S +R   PD   L  +AT   +V+    + L      ++ S+  + N  
Sbjct:   329 --FEPQIRKIVSQIR---PDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQS 383

Query:   120 FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE-RTTCDELSAYLSAGGISCAAYHAG 178
               +V              ++LK   D   I+  +E +  CD+++  L   G    A H  
Sbjct:   384 INQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGD 443

Query:   179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  R  VL ++ S R  ++ AT     G+D KD++ V +++ P ++E +    GR GR
Sbjct:   444 KTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGR 503

Query:   239 DQLPSKSLLYYGMDDRR 255
                   +  ++  D+ +
Sbjct:   504 AGAKGMAFTFFTHDNAK 520


>TAIR|locus:2087852 [details] [associations]
            symbol:PMH2 "putative mitochondrial RNA helicase 2"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
            evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
            GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
            UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
            PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
            KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
            HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
            ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
            Uniprot:Q9LUW5
        Length = 616

 Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 35/119 (29%), Positives = 53/119 (44%)

Query:   142 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 201
             A G  C IV+   +   D LS Y  A    C A H  ++   R   L  +      ++VA
Sbjct:   347 AKGGKC-IVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVA 404

Query:   202 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260
             T     G+D  +V L+ H+ +P + E F   +GR GR      ++L Y  D  R ++ I
Sbjct:   405 TDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKII 463


>TAIR|locus:2119176 [details] [associations]
            symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
            IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
            ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
            EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
            GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
            PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
            Uniprot:Q9SZB4
        Length = 542

 Score = 149 (57.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 55/220 (25%), Positives = 92/220 (41%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNYLPDVP 82
             + ATPG +  +  KK  S     L+ +DEA  +   G   D R  +    S R       
Sbjct:   233 VVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQ------ 286

Query:    83 ILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNL--FYEVRY-KXXXXXXXXXXCS 138
              L  +AT   K+Q  +  +  L  P+ +        NL    EV Y K          C 
Sbjct:   287 TLLFSATMPAKIQ--IFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC- 343

Query:   139 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 198
             + K       +++C  +   D++  YL   G+   A H G + + R   +  + + +K V
Sbjct:   344 LQKTTPPV--LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDV 401

Query:   199 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             +VAT     G+D  D++ V ++++P  +E +    GR GR
Sbjct:   402 LVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGR 441


>DICTYBASE|DDB_G0275443 [details] [associations]
            symbol:helB1 "putative RNA splicing factor"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
            GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
            EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
            ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
            GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
            ProtClustDB:CLSZ2500419 Uniprot:Q553B1
        Length = 1151

 Score = 153 (58.9 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 58/223 (26%), Positives = 97/223 (43%)

Query:    27 LTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPD 80
             +  TPG M  +   ++R + NL     + +DEA  +   G  F P    +  S+R   PD
Sbjct:   636 VVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMG--FGPQINCIVDSIR---PD 690

Query:    81 VPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNL--FYEVRYKXXXXXXXXX 135
                +  +AT  PKV+ +V + + L  PL + +   S    ++  F EVR           
Sbjct:   691 RQTIMFSATFPPKVE-NVAKKI-LNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIE 748

Query:   136 XCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 195
               S+    G    +++   + T D L   LS     C + H   +   R   + D+ +  
Sbjct:   749 LLSIWYHKGQI--LIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKV 806

Query:   196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             K +++AT     G+D KD+ LV +F+ P  +E +    GR GR
Sbjct:   807 KTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGR 849


>TAIR|locus:2176192 [details] [associations]
            symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
            OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
            RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
            SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
            EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
            GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
            ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
            Uniprot:Q9LU46
        Length = 591

 Score = 149 (57.5 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 54/220 (24%), Positives = 90/220 (40%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNYLPDVP 82
             + ATPG +  +  KK  S      + +DEA  +   G   D R  +    S R       
Sbjct:   282 VVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQ------ 335

Query:    83 ILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNL--FYEVRY-KXXXXXXXXXXCS 138
              L  +AT   K+Q  +     L  P+ +        NL    EV Y K          C 
Sbjct:   336 TLLFSATMPTKIQ--IFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC- 392

Query:   139 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 198
              L+       +++C  +   D++  YL   G+   A H G + + R   +  + + +K V
Sbjct:   393 -LQKTSPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDV 450

Query:   199 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             +VAT     G+D  D++ V ++++P  +E +    GR GR
Sbjct:   451 LVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 490


>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
            symbol:PF14_0655 "RNA helicase-1, putative"
            species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003743 "translation initiation factor activity"
            evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
            [GO:0006446 "regulation of translational initiation" evidence=ISS]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
            GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
            RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
            IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
            GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
            ProtClustDB:PTZ00424 Uniprot:Q8IKF0
        Length = 398

 Score = 145 (56.1 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 59/260 (22%), Positives = 115/260 (44%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGL--LNLVAIDEAHCISSWG 61
             T + ED+D  K  + ++        TPG +   + K H  G+  L L  +DEA  + S G
Sbjct:   129 TVVREDIDKLKQGVHMV------VGTPGRVYDMIDKRHL-GVDRLKLFILDEADEMLSRG 181

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPN 118
               F+    ++   +  +PD+ +   +AT   ++ +  + +  +++P   LV K       
Sbjct:   182 --FKAQIYEV--FKKLVPDIQVALFSATMPQEILE--LTTRFMRDPKTILVKKDELTLEG 235

Query:   119 L--FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
             +  FY    K          C + +    T +I+YC  R   D L+  +     + +  H
Sbjct:   236 IRQFYVAVEKEEWKLDTL--CDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMH 293

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
               ++ K R  ++ ++ S   +V+V T     GID + V LV ++++P S + +    GR+
Sbjct:   294 GDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRS 353

Query:   237 GRDQLPSKSLLYYGMDDRRR 256
             GR      ++ +   DD+ +
Sbjct:   354 GRFGRKGVAINFVTNDDKEK 373


>UNIPROTKB|Q8IKF0 [details] [associations]
            symbol:H45 "Helicase 45" species:36329 "Plasmodium
            falciparum 3D7" [GO:0006446 "regulation of translational
            initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
            GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
            RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
            IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
            GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
            ProtClustDB:PTZ00424 Uniprot:Q8IKF0
        Length = 398

 Score = 145 (56.1 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 59/260 (22%), Positives = 115/260 (44%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGL--LNLVAIDEAHCISSWG 61
             T + ED+D  K  + ++        TPG +   + K H  G+  L L  +DEA  + S G
Sbjct:   129 TVVREDIDKLKQGVHMV------VGTPGRVYDMIDKRHL-GVDRLKLFILDEADEMLSRG 181

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPN 118
               F+    ++   +  +PD+ +   +AT   ++ +  + +  +++P   LV K       
Sbjct:   182 --FKAQIYEV--FKKLVPDIQVALFSATMPQEILE--LTTRFMRDPKTILVKKDELTLEG 235

Query:   119 L--FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
             +  FY    K          C + +    T +I+YC  R   D L+  +     + +  H
Sbjct:   236 IRQFYVAVEKEEWKLDTL--CDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMH 293

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
               ++ K R  ++ ++ S   +V+V T     GID + V LV ++++P S + +    GR+
Sbjct:   294 GDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRS 353

Query:   237 GRDQLPSKSLLYYGMDDRRR 256
             GR      ++ +   DD+ +
Sbjct:   354 GRFGRKGVAINFVTNDDKEK 373


>ZFIN|ZDB-GENE-980526-150 [details] [associations]
            symbol:pl10 "pl10" species:7955 "Danio rerio"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
            EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
            ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
            CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
            Uniprot:Q6PBB2
        Length = 688

 Score = 148 (57.2 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 53/221 (23%), Positives = 96/221 (43%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL   N + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   352 LVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGLR 408

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D +E        V +      N+  +V +             
Sbjct:   409 QTMMFSATFPKEIQILARDFLEDYIFL--AVGRVGSTSENITQKVVW-VEENDKRSFLLD 465

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S R  
Sbjct:   466 LLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCP 525

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   526 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 566


>ASPGD|ASPL0000014018 [details] [associations]
            symbol:fal1 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
            ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
            EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
            OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
        Length = 399

 Score = 144 (55.7 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 52/247 (21%), Positives = 107/247 (43%)

Query:    14 GKPSLRLLYVTPELTATPGFMSKL-KKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKL 71
             G+   +L Y    ++ TPG ++ + ++ H R   + ++ +DEA  + + G  FR    ++
Sbjct:   134 GEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRG--FR---EQI 188

Query:    72 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNLFYEVRYKXX 128
               +  YLP    + + +   P    D M +  + +P   LV +       +         
Sbjct:   189 YDVYRYLPPATQVVVVSATLPYDVLD-MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEK 247

Query:   129 XXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 188
                     C +      T A+++C  R   D L+  +     + ++ H  +  K R S++
Sbjct:   248 EEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIM 307

Query:   189 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248
              D+     +V+++T  +  GID + V LV ++++P + E +    GR+GR      ++ +
Sbjct:   308 QDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINF 367

Query:   249 YGMDDRR 255
                DD R
Sbjct:   368 VTSDDVR 374


>TAIR|locus:2091191 [details] [associations]
            symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
            hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
            [GO:0035145 "exon-exon junction complex" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
            GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
            EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
            OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
            IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
            ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
            PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
            KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
            PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
            GermOnline:AT3G19760 Uniprot:Q94A52
        Length = 408

 Score = 144 (55.7 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 52/236 (22%), Positives = 109/236 (46%)

Query:    27 LTATPGF---MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVP 82
             ++ TPG    M K + + +R +  L+ +DE+  + S G  F+    ++  +  YLP D+ 
Sbjct:   157 VSGTPGRVCDMIKRRSLRTRAI-KLLILDESDEMLSRG--FKD---QIYDVYRYLPPDLQ 210

Query:    83 ILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXC 137
             +  ++AT   ++ +  M S  +  P   LV +       +  F+    K          C
Sbjct:   211 VCLVSATLPHEILE--MTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTL--C 266

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
              +      T A+++C  +   D LS  + +   + ++ H  +  K R ++++++ S   +
Sbjct:   267 DLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSR 326

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
             V++ T  +  GID + V LV ++++P + E +    GR+GR      ++ +   DD
Sbjct:   327 VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 382


>DICTYBASE|DDB_G0287361 [details] [associations]
            symbol:ddx41 "DEAD box protein abstrakt"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
            GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
            EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
            IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
            KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
        Length = 671

 Score = 146 (56.5 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 54/217 (24%), Positives = 95/217 (43%)

Query:    27 LTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 83
             + ATPG +  L   KKI+ + L   + +DEA  +   G  F    R  S L N+      
Sbjct:   359 IIATPGRLLDLLNKKKINFK-LCKYLGLDEADRLIDLG--FEDDIR--SVLDNFTNQRQT 413

Query:    84 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLK 141
             L  +AT   K+Q+    +L L   + V ++     N+  EV + K          C  L+
Sbjct:   414 LLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLEC--LQ 471

Query:   142 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 201
                    +++C  +   D++  YL    +   + H   +   R S +  +   +K V+VA
Sbjct:   472 KTPPP-VLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVA 530

Query:   202 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             T     G+D  +++ V +F++P+ +E +    GR GR
Sbjct:   531 TDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGR 567


>TAIR|locus:2127043 [details] [associations]
            symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
            "virus-host interaction" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
            GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
            ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
            IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
            RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
            UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
            PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
            EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
            GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
            Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
        Length = 505

 Score = 144 (55.7 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 63/228 (27%), Positives = 101/228 (44%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLR 75
             +RL      L  TPG +  L K     L   +++ +DEA  + S   +F+PS   L S  
Sbjct:   244 MRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLS--QEFQPSVEHLIS-- 299

Query:    76 NYLPDV-PILALTATAAPKVQKDVMESLCLQNPLVL----KSSFNRPNLFYEVRYKXXXX 130
              +LP+   IL  +AT  P   KD  +   L NP V+    + +      FY    +    
Sbjct:   300 -FLPESRQILMFSATF-PVTVKDFKDRF-LTNPYVINLMDELTLKGITQFYAFVEERQKI 356

Query:   131 XXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 190
                    S L+ N    +I++C      + L+  ++  G SC   HA +    R+ V  D
Sbjct:   357 HCLNTLFSKLQINQ---SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHD 413

Query:   191 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             + +   + +V T  F  GID + V +V +F+ PK+ E +    GR+GR
Sbjct:   414 FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGR 461


>WB|WBGene00002083 [details] [associations]
            symbol:inf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
            GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
            EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
            UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
            DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
            PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
            EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
            UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
            InParanoid:P27639 NextBio:890522 Uniprot:P27639
        Length = 402

 Score = 142 (55.0 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 53/241 (21%), Positives = 106/241 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG +  +  +       + +  +DEA  + S G  F+    ++   R+   DV ++
Sbjct:   151 VVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRG--FKDQIYEV--FRSMPQDVQVV 206

Query:    85 ALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSV 139
              L+AT   +V  DV     ++NP   LV K       +  FY    K          C +
Sbjct:   207 LLSATMPSEVL-DVTNRF-MRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCL--CDL 262

Query:   140 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 199
                   T A+++C  R   D L+  ++    + +  H  ++   R +++ ++ S   +V+
Sbjct:   263 YNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVL 322

Query:   200 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 259
             + T     GID + V LV ++++P + E +    GR+GR      ++ +   +D R+++ 
Sbjct:   323 ITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKE 382

Query:   260 I 260
             I
Sbjct:   383 I 383


>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
            symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
            IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
            Uniprot:F1QQ09
        Length = 473

 Score = 143 (55.4 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    29 ATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 86
             ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L  
Sbjct:   170 ATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMG--FEEDIRTIFSY--FKGQRQTLLF 225

Query:    87 TATAAPKVQKDVMESLCLQNPLVL---KSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
             +AT   K+Q     +L    P+ +   ++     ++  EV Y K          C  L+ 
Sbjct:   226 SATMPKKIQNFAKSALV--KPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 281

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   282 TPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVAT 340

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   341 DVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGR 376


>ASPGD|ASPL0000006660 [details] [associations]
            symbol:AN5931 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
            EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
            ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
            EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
            OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
        Length = 563

 Score = 144 (55.7 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 61/261 (23%), Positives = 113/261 (43%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWG 61
             T +Y  +  G P +R L    E+  ATPG +  + +     L  +  + +DEA  +   G
Sbjct:   245 TCVYGGVPKG-PQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMG 303

Query:    62 HDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFN-R 116
               F P  RK+ S +R   PD      +AT   +V++   D + +    N   +  S N R
Sbjct:   304 --FEPQIRKIISQIR---PDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHR 358

Query:   117 PNLFYEVRYKXXXXXXXXXXCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAY 175
                  EV  +             +  N G+ C +V+   +   DE++ +L   G    + 
Sbjct:   359 ITQIVEVISEFEKRDRMIKHLEKIMENRGNKC-LVFTGTKRIADEITRFLRQDGWPALSI 417

Query:   176 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 235
             H     + R  VL+++ + +  ++VAT     GID +D+  V +++ P + E +    GR
Sbjct:   418 HGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGR 477

Query:   236 AGRDQLPSKSLLYYGMDDRRR 256
              GR      ++ ++  D+ ++
Sbjct:   478 TGRAGAKGTAITFFTTDNAKQ 498


>FB|FBgn0015331 [details] [associations]
            symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
            "establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
            system development" evidence=NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
            evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
            GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
            EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
            ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
            MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
            EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
            UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
            OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
            NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
        Length = 619

 Score = 144 (55.7 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 54/216 (25%), Positives = 93/216 (43%)

Query:    27 LTATPG-FMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG  M  L KKI +  +   + +DEA  +   G  F    R + S   +      L
Sbjct:   313 VVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMG--FEEDVRTIFSF--FKGQRQTL 368

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     N+  +V Y K          C  L+ 
Sbjct:   369 LFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDC--LQK 426

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + RS  +D +   +K V+VAT
Sbjct:   427 TAPP-VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVAT 485

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D  +V+ V ++++P  +E +    GR GR
Sbjct:   486 DVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGR 521


>RGD|1559513 [details] [associations]
            symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
            IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
            NextBio:667517 Uniprot:D4ADJ9
        Length = 621

 Score = 144 (55.7 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   316 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 371

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     ++  EV Y K          C  L+ 
Sbjct:   372 LFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 429

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   430 TPPP-VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 488

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   489 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 524


>RGD|2314437 [details] [associations]
            symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
            species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
            EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
            UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
            GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
        Length = 652

 Score = 144 (55.7 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 52/221 (23%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   313 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 369

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   370 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEELDKRSFLLD 426

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L     +C + H   + K R   L  + S RK 
Sbjct:   427 LLNATGRDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKP 486

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   487 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 527


>POMBASE|SPBP8B7.16c [details] [associations]
            symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
            species:4896 "Schizosaccharomyces pombe" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
            EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
            ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
            EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
            NextBio:20802492 Uniprot:P24782
        Length = 550

 Score = 143 (55.4 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 64/261 (24%), Positives = 111/261 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSW 60
             T +Y  +  G P +R L    E+  ATPG +  +    K + R +  LV +DEA  +   
Sbjct:   227 TCVYGGVPRG-PQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLV-LDEADRMLDM 284

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL--CLQ---NPLVLKSSFN 115
             G  F P  RK+  +    PD   +  +AT   +VQ+   + L   +Q     L L +S N
Sbjct:   285 G--FEPQIRKI--VDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHN 340

Query:   116 RPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 175
                +   V               VLK + D   +++   +   D+++ +L   G    A 
Sbjct:   341 IKQIVEVVDNADKRARLGKDIEEVLK-DRDNKVLIFTGTKRVADDITRFLRQDGWPALAI 399

Query:   176 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 235
             H       R  VL+++ + +  ++VAT     GID K +  V +++ P + E +    GR
Sbjct:   400 HGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGR 459

Query:   236 AGRDQLPSKSLLYYGMDDRRR 256
              GR      +  Y+  D+ ++
Sbjct:   460 TGRAGAKGTAYTYFTSDNAKQ 480


>ZFIN|ZDB-GENE-030131-18 [details] [associations]
            symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
            UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
            KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
            Uniprot:F1QBS1
        Length = 671

 Score = 144 (55.7 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 58/241 (24%), Positives = 99/241 (41%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWG 61
             T +Y     G P +R L    E+  ATPG +    ++    L     + +DEA  +   G
Sbjct:   200 TCVYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMG 258

Query:    62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRPN 118
               F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N   
Sbjct:   259 --FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNI 314

Query:   119 L-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 177
             L   +V  +             + A  +   I++   +  CDEL+  +   G      H 
Sbjct:   315 LQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHG 374

Query:   178 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 237
               +   R  VL ++ S +  +++AT     G+D +DV+ V +++ P S E +    GR  
Sbjct:   375 DKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTA 434

Query:   238 R 238
             R
Sbjct:   435 R 435


>FB|FBgn0035720 [details] [associations]
            symbol:CG10077 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
            EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
            GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
            ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
            RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
            STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
            UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
        Length = 818

 Score = 145 (56.1 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 58/219 (26%), Positives = 96/219 (43%)

Query:    29 ATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 83
             ATPG   +L     RG  +L     + +DEA  +   G  F P  RK+  ++   PD  +
Sbjct:   286 ATPG---RLIDFLERGTTSLKRCTYLVLDEADRMLDMG--FEPQIRKI--MQQIRPDRQV 338

Query:    84 LALTATAAPKVQKDVMESL--CLQ-NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSV 139
             L  +AT   +V++   E L   +Q N   L  S N   L   +V  +           + 
Sbjct:   339 LMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTD 398

Query:   140 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 199
             + A  +T  I++   +   DE++  +S  G    A H   + + R  VL  + + R  ++
Sbjct:   399 ISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 458

Query:   200 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             VAT     G+D  DV+ V +++ P + E +    GR GR
Sbjct:   459 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGR 497


>TIGR_CMR|CPS_3401 [details] [associations]
            symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
            STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
            OMA:HLIKEHQ ProtClustDB:CLSK907013
            BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
        Length = 432

 Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 51/215 (23%), Positives = 96/215 (44%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             L ATPG +  L   ++  L  +  + +DEA  + S G        +L++L    P     
Sbjct:   141 LVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFT-----EELTALLALTPKKKQT 195

Query:    85 ALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKXXXXXXXXXXCSVLKAN 143
              L +   P+    + + L L NP+ ++  S +   L   V +             +++  
Sbjct:   196 LLFSATFPEQVTTLTQEL-LNNPIEIQLQSADASTLVQRV-FTVNKGEKTAVLAHLIQQE 253

Query:   144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203
                 A+++   +  C+ L+  L+  GI+ A +H       RS VLD + +   +V++AT 
Sbjct:   254 QWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATD 313

Query:   204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                 G+D + + +V +FN+P+S   +    GR+GR
Sbjct:   314 IAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGR 348


>TAIR|locus:2828586 [details] [associations]
            symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
            EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
            RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
            UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
            PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
            EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
            GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
            ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
        Length = 505

 Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 58/234 (24%), Positives = 100/234 (42%)

Query:    27 LTATPGFMSKLKKIHSRGLLNLVA--IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG +  L   H+  L N++   +DE  C+   G  FR    ++      L    +L
Sbjct:   240 IIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRG--FRDQVMQIFQA---LSQPQVL 294

Query:    85 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-LFYEVRYKXXXXXXXXXXCSVLKAN 143
               +AT + +V+K V  SL  +  LV   + N+PN    ++               +L++ 
Sbjct:   295 LFSATISREVEK-VGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQ 353

Query:   144 GD--TCAIVYCLERTTCDELS-AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200
                   A+VY   R   D L+ A     G+   + H     K R  V+  ++     V+V
Sbjct:   354 NHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLV 413

Query:   201 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254
             +T   G G+D   VR V  F++P +++ +    GRA R      ++++   DDR
Sbjct:   414 STGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDR 467


>UNIPROTKB|F1NAH6 [details] [associations]
            symbol:LOC100859810 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
            [GO:0035458 "cellular response to interferon-beta" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
            to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
            EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
            Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
        Length = 607

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 51/218 (23%), Positives = 95/218 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   313 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 368

Query:    85 ALTATAAPKVQKDVMESLCLQNPLVL---KSSFNRPNLFYEVRY-KXXXXXXXXXXCSVL 140
               +AT   K+Q     +L    P+ +   ++     ++  EV Y K          C  L
Sbjct:   369 LFSATMPKKIQNFAKSALV--KPITINVGRAGAASLDVVQEVEYVKEEAKMVYLLEC--L 424

Query:   141 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200
             +       +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+V
Sbjct:   425 QKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLV 483

Query:   201 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             AT     G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   484 ATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 521


>UNIPROTKB|A3KN07 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
            RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
            Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
            InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
        Length = 622

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   317 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 372

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     ++  EV Y K          C  L+ 
Sbjct:   373 LFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 430

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   431 TPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 525


>UNIPROTKB|E2R052 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
            RefSeq:XP_536417.2 ProteinModelPortal:E2R052
            Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
            NextBio:20854482 Uniprot:E2R052
        Length = 622

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   317 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 372

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     ++  EV Y K          C  L+ 
Sbjct:   373 LFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 430

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   431 TPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 525


>UNIPROTKB|Q9UJV9 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
            "cellular response to interferon-beta" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0051607 "defense response to virus"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0007275 "multicellular organismal development"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
            GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
            EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
            EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
            UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
            SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
            PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
            PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
            KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
            HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
            PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
            OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
            EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
            ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
            Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
        Length = 622

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   317 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 372

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     ++  EV Y K          C  L+ 
Sbjct:   373 LFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 430

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   431 TPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 525


>MGI|MGI:1920185 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
            response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
            RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
            SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
            PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
            KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
            CleanEx:MM_DDX41 Genevestigator:Q91VN6
            GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
        Length = 622

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   317 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 372

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     ++  EV Y K          C  L+ 
Sbjct:   373 LFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 430

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   431 TPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 525


>RGD|1311758 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
            evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
            "defense response to virus" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
            RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
            Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
            UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
            Uniprot:B2RYL8
        Length = 622

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   317 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 372

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     ++  EV Y K          C  L+ 
Sbjct:   373 LFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 430

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   431 TPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 525


>UNIPROTKB|J3KNN5 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
            Ensembl:ENST00000330503 Uniprot:J3KNN5
        Length = 640

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   335 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 390

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     ++  EV Y K          C  L+ 
Sbjct:   391 LFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 448

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   449 TPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 507

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   508 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 543


>UNIPROTKB|J9NZF6 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
            Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
        Length = 649

 Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 51/216 (23%), Positives = 94/216 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +  L  KK+ S  +   +A+DEA  +   G  F    R + S   +      L
Sbjct:   344 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG--FEGDIRTIFSY--FKGQRQTL 399

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKA 142
               +AT   K+Q     +L     + V ++     ++  EV Y K          C  L+ 
Sbjct:   400 LFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQK 457

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
                   +++  ++   D +  YL   G+   A H G + + R+  ++ +   +K V+VAT
Sbjct:   458 TPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 516

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D   ++ V ++++P+ +E +    GR GR
Sbjct:   517 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGR 552


>UNIPROTKB|B4DXX7 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
            UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
            IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
            UCSC:uc011nar.1 Uniprot:B4DXX7
        Length = 657

 Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 51/221 (23%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   315 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 371

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   372 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEDLDKRSFLLD 428

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   429 ILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 488

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +VR V +F++P  +E +    GR GR
Sbjct:   489 ILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGR 529


>UNIPROTKB|O15523 [details] [associations]
            symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
            HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
            HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
            EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
            RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
            SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
            PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
            Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
            KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
            HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
            InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
            NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
            Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
        Length = 660

 Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 51/221 (23%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 374

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   375 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEDLDKRSFLLD 431

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   432 ILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 491

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +VR V +F++P  +E +    GR GR
Sbjct:   492 ILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGR 532


>WB|WBGene00020284 [details] [associations]
            symbol:mel-46 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006898
            GO:GO:0040010 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K13131 GeneTree:ENSGT00530000062880 EMBL:CU457744 EMBL:EU051652
            RefSeq:NP_001255908.1 RefSeq:NP_001255909.1 UniGene:Cel.7369
            ProteinModelPortal:G5ED26 SMR:G5ED26 EnsemblMetazoa:T06A10.1a
            EnsemblMetazoa:T06A10.1b GeneID:178469 KEGG:cel:CELE_T06A10.1
            CTD:178469 WormBase:T06A10.1a WormBase:T06A10.1b OMA:SATYPRN
            NextBio:901260 Uniprot:G5ED26
        Length = 973

 Score = 145 (56.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 53/240 (22%), Positives = 114/240 (47%)

Query:     4 KTKIYEDLDSGKPSLRLLYVT-PELT-ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISS 59
             +T +Y    + K +L  L  T P++   TPG +++L K+ +  +  ++   +DEA  +  
Sbjct:   119 RTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMD 178

Query:    60 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL 119
                 FR     ++ + N LP +  +A+ +   P+   D + S  L++  +++ + +   L
Sbjct:   179 --EVFRDD---INIIINSLPQIRQVAVFSATYPR-NLDNLLSTFLRDAALVRFNADDVQL 232

Query:   120 FYEVRYKXXXXXXXXXXCS-VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG 178
             F   +Y            + VLK+     A+V+C + + C+ ++ +L + G+      + 
Sbjct:   233 FGIKQYVVAKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSA 292

Query:   179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++ K R   +D   + R +++V++     GID  +V LV + +   + E ++   GRA R
Sbjct:   293 MSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIGRAAR 352


>RGD|1308685 [details] [associations]
            symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
            evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
            [GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
            GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
            RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
            GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
        Length = 819

 Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 39/153 (25%), Positives = 71/153 (46%)

Query:    87 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-YKXXXXXXXXXXCSVLKANGD 145
             TAT  P V++ +  S   +  +V   S  +P+   E + +            ++L+   D
Sbjct:   605 TATMPPAVER-LARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFD 663

Query:   146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205
                I++  ++  CD L+  L   G +    H G   + R   L +  +  K ++VAT   
Sbjct:   664 PPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVA 723

Query:   206 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             G GID +DV +V ++++ K++E +    GR GR
Sbjct:   724 GRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 756


>UNIPROTKB|A6QLB2 [details] [associations]
            symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
            HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
            EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
            UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
            GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
            Uniprot:A6QLB2
        Length = 820

 Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 39/153 (25%), Positives = 71/153 (46%)

Query:    87 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-YKXXXXXXXXXXCSVLKANGD 145
             TAT  P V++ +  S   +  +V   S  +P+   E + +            ++L+   D
Sbjct:   606 TATMPPAVER-LARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFD 664

Query:   146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205
                I++  ++  CD L+  L   G +    H G   + R   L +  +  K ++VAT   
Sbjct:   665 PPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVA 724

Query:   206 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             G GID +DV +V ++++ K++E +    GR GR
Sbjct:   725 GRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 757


>UNIPROTKB|E2RTL6 [details] [associations]
            symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
            GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
            RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
            Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
            NextBio:20853071 Uniprot:E2RTL6
        Length = 820

 Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 39/153 (25%), Positives = 71/153 (46%)

Query:    87 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-YKXXXXXXXXXXCSVLKANGD 145
             TAT  P V++ +  S   +  +V   S  +P+   E + +            ++L+   D
Sbjct:   606 TATMPPAVER-LARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFD 664

Query:   146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205
                I++  ++  CD L+  L   G +    H G   + R   L +  +  K ++VAT   
Sbjct:   665 PPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVA 724

Query:   206 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             G GID +DV +V ++++ K++E +    GR GR
Sbjct:   725 GRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 757


>UNIPROTKB|Q9BUQ8 [details] [associations]
            symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
            "RNA splicing, via transesterification reactions" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
            "cis assembly of pre-catalytic spliceosome" evidence=IC]
            [GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
            GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
            KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
            RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
            SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
            STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
            PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
            KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
            HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
            PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
            InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
            GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
            CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
            Uniprot:Q9BUQ8
        Length = 820

 Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 39/153 (25%), Positives = 71/153 (46%)

Query:    87 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-YKXXXXXXXXXXCSVLKANGD 145
             TAT  P V++ +  S   +  +V   S  +P+   E + +            ++L+   D
Sbjct:   606 TATMPPAVER-LARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFD 664

Query:   146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205
                I++  ++  CD L+  L   G +    H G   + R   L +  +  K ++VAT   
Sbjct:   665 PPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVA 724

Query:   206 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             G GID +DV +V ++++ K++E +    GR GR
Sbjct:   725 GRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGR 757


>DICTYBASE|DDB_G0291804 [details] [associations]
            symbol:ddx6 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
            ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
            EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
            OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
        Length = 423

 Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 62/230 (26%), Positives = 99/230 (43%)

Query:    18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNL--VAIDEAHCISSWGHDFRPSYRKLSSLR 75
             +RL      L ATPG +  L + +   L N   + +DEA  + S   +F+P   +L    
Sbjct:   162 MRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLS--QEFQPLVEQLI--- 216

Query:    76 NYLPDVPILALTATAAPKVQKDVME-------SLCLQNPLVLKSSFNRPNLFYEVRYKXX 128
             N+LP    + L +   P   K   E        + L   L LK    +   F E R K  
Sbjct:   217 NFLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLMEELTLKG-VTQYYAFVEERQKIH 275

Query:   129 XXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 188
                      S L+ N    +I++C      + L+  ++  G SC   HA +    R+ V 
Sbjct:   276 CLNTLF---SKLQINQ---SIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVF 329

Query:   189 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
              D+ +   + +V++  F  GID +DV +V +F+ PK  E +    GR+GR
Sbjct:   330 HDFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGR 379


>FB|FBgn0037549 [details] [associations]
            symbol:CG7878 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
            GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
            UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
            GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
            FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
            GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
        Length = 703

 Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 52/234 (22%), Positives = 102/234 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG ++ L    +     +  + +DEA  +   G  F P  RK+  + +  PD   +
Sbjct:   410 IICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMG--FEPQIRKV--MLDIRPDRQTI 465

Query:    85 ALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRP---NLFYEVRYKXXXXXXXXXXCSVL 140
               +AT  P V++ + +S  ++NP+ V   S +     ++   ++             S +
Sbjct:   466 MTSATWPPGVRR-LAQSY-MKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFV 523

Query:   141 KANGDTCAIV-YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 199
             K    T  I+ +C  +   D+LS+ L+  G      H   +   R   + D  S   +++
Sbjct:   524 KNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRIL 583

Query:   200 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
             VAT     G+D +D+  V +++ P ++E +    GR GR      S+ ++  +D
Sbjct:   584 VATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTRED 637


>WB|WBGene00013214 [details] [associations]
            symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
            HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
            SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
            GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
            WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
            Uniprot:Q9XVZ6
        Length = 504

 Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 60/242 (24%), Positives = 104/242 (42%)

Query:    29 ATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 86
             ATPG ++ L    + S   +  V +DEA  +   G  F  + R++  L    PD  ++AL
Sbjct:   218 ATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMG--FEVAIRRI--LFEIRPD-RLVAL 272

Query:    87 TATAAPK-VQK--D--VMESLCLQNPLVLKSSFNRPNLFYE-VRYKXXXXXXXXXXCSVL 140
             T+   P+ V+K  D    E++   N  +  +S      F+E V +             + 
Sbjct:   273 TSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLT 332

Query:   141 KANGDTCA-IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 199
              A+G     I++   +   D LS+     GI+    H G +   R   L+   S   Q++
Sbjct:   333 AAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQIL 392

Query:   200 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 259
             VAT     GID  D+  V +++ P  +E +    GR GR     +++ +   +DR   E 
Sbjct:   393 VATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEG 452

Query:   260 IL 261
             ++
Sbjct:   453 LI 454


>ZFIN|ZDB-GENE-030131-925 [details] [associations]
            symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
            ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
        Length = 617

 Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 62/253 (24%), Positives = 106/253 (41%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   201 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLV-LDEADRMLDM 258

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   259 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHN 314

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V                + +  +   I++   +  CD+L+  +   G      H
Sbjct:   315 ILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIH 374

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                N + R  VL+++   +  +++AT     G+D +DV+ V +F+ P + E +    GR 
Sbjct:   375 GDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRT 434

Query:   237 GRDQLPSKSLLYY 249
              R Q    +  ++
Sbjct:   435 ARSQKTGTAYTFF 447


>UNIPROTKB|E2RDN3 [details] [associations]
            symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
            OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
            Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
        Length = 1163

 Score = 145 (56.1 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 46/152 (30%), Positives = 67/152 (44%)

Query:    18 LRLLYVTPE--LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-L 74
             ++LL ++PE  + A  G    L ++     +    IDEAHCIS W H+FRP Y ++   L
Sbjct:   587 VQLLVLSPETLVGAGAGMPGHLPQLPP---VAFACIDEAHCISQWSHNFRPCYLRVCKVL 643

Query:    75 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXX 133
             R ++     L LTATA     +DV   L +   LVL+     P NL   V          
Sbjct:   644 REHMGVRCFLGLTATATRSTARDVARHLGVAEELVLRGPATVPSNLHLSVSRDRDPDQAL 703

Query:   134 XXXCSVLKANGDTCAIVYCLERTTCDELSAYL 165
                    +    +  IVYC  R   + ++A L
Sbjct:   704 VTLLQSDRFRALSSVIVYCHRRGDTERVAALL 735


>ZFIN|ZDB-GENE-070912-83 [details] [associations]
            symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
            EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
            Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
        Length = 485

 Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 64/228 (28%), Positives = 101/228 (44%)

Query:    18 LRLLYVTPELTATPG-FMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRK-LSSL 74
             +RL      + ATPG  +  +KK +   G + ++ +DEA  + S   DF     + LSSL
Sbjct:   212 MRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADKLLS--QDFVQMMEEILSSL 269

Query:    75 RNYLPDVPILALTATAAPKVQKDVMESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXX 130
                     IL  +AT    VQK  M S  LQ P    L+ + +      +Y    +    
Sbjct:   270 SKQRQ---ILLYSATFPLSVQK-FMNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKV 324

Query:   131 XXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 190
                    S L+ N    +I++C      + L+  +S  G SC   HA +  + R+ V  D
Sbjct:   325 HCLNTLFSRLQINQ---SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHD 381

Query:   191 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             + +   + +V T  F  GID + V +V +F+ PK  E +    GR+GR
Sbjct:   382 FRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGR 429


>UNIPROTKB|E1C2R8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
            development" evidence=IEA] [GO:0072358 "cardiovascular system
            development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
            Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
        Length = 496

 Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   195 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLV-LDEADRMLDM 252

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   253 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHN 308

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   309 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 368

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                +   R  VL+++ S +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   369 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 428

Query:   237 GR 238
              R
Sbjct:   429 AR 430


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 33/139 (23%), Positives = 66/139 (47%)

Query:   122 EVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
             +V Y+           S+L +     AIV+C  +   DE+   L+  G +    H  ++ 
Sbjct:   216 QVYYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQ 275

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R+  +  + + + +++VAT     G+D  DV  V +F+IP++ E++    GR GR   
Sbjct:   276 RERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGR 335

Query:   242 PSKSLLYYGMDDRRRMEFI 260
               K++      +R+ ++ I
Sbjct:   336 EGKAITLINYRERKLLKAI 354


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 33/139 (23%), Positives = 66/139 (47%)

Query:   122 EVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
             +V Y+           S+L +     AIV+C  +   DE+   L+  G +    H  ++ 
Sbjct:   216 QVYYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQ 275

Query:   182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
             + R+  +  + + + +++VAT     G+D  DV  V +F+IP++ E++    GR GR   
Sbjct:   276 RERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGR 335

Query:   242 PSKSLLYYGMDDRRRMEFI 260
               K++      +R+ ++ I
Sbjct:   336 EGKAITLINYRERKLLKAI 354


>UNIPROTKB|F1RX16 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
            signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
            of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
            "intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
            "cellular response to osmotic stress" evidence=IEA] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=IEA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
            "positive regulation of translational initiation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
            response" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0043024 "ribosomal small subunit
            binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
            evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
            "negative regulation of protein complex assembly" evidence=IEA]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA]
            [GO:0030307 "positive regulation of cell growth" evidence=IEA]
            [GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
            "response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
            signaling pathway via death domain receptors" evidence=IEA]
            [GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
            EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
        Length = 661

 Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 376

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   377 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEESDKRSFLLD 433

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   434 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 493

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   494 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534


>UNIPROTKB|J9P0V9 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
            RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
            KEGG:cfa:480886 Uniprot:J9P0V9
        Length = 662

 Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 376

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   377 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEESDKRSFLLD 433

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   434 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 493

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   494 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534


>UNIPROTKB|O00571 [details] [associations]
            symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
            "mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
            regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IDA] [GO:1900087
            "positive regulation of G1/S transition of mitotic cell cycle"
            evidence=IMP] [GO:0045948 "positive regulation of translational
            initiation" evidence=IMP] [GO:0031333 "negative regulation of
            protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
            initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
            regulation of translation" evidence=IMP] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
            stress" evidence=IDA] [GO:0071243 "cellular response to
            arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
            regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
            [GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
            "cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
            "positive regulation of translation" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
            initiation factor binding" evidence=IDA] [GO:0042256 "mature
            ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
            subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
            [GO:0009615 "response to virus" evidence=IDA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IDA] [GO:0032728
            "positive regulation of interferon-beta production" evidence=TAS]
            [GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
            "positive regulation of chemokine (C-C motif) ligand 5 production"
            evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
            "transcription factor binding" evidence=IDA] [GO:0030308 "negative
            regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
            apoptotic signaling pathway via death domain receptors"
            evidence=IMP] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IMP] [GO:0043154 "negative regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
            evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IMP]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
            GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
            GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
            GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
            GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
            GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
            GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
            GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
            GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
            KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
            EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
            EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
            IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
            UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
            PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
            DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
            PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
            SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
            Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
            KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
            HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
            neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
            OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
            ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
            GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
            CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
            GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
            GO:GO:0032728 Uniprot:O00571
        Length = 662

 Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 376

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   377 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEESDKRSFLLD 433

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   434 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 493

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   494 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 138 (53.6 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 53/215 (24%), Positives = 93/215 (43%)

Query:    27 LTATPGFMSKLKKIHSRGLLNLVA--IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPI 83
             L ATPG +  L   ++  L  + A  +DEA  + S G        +L  +   LP     
Sbjct:   139 LVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFT-----EELEQVLAALPRQKQT 193

Query:    84 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKAN 143
             L  +AT   +V+   + +  L  PL       + +   +                ++K +
Sbjct:   194 LLFSATFPEEVR--ALTTKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLIKQH 251

Query:   144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203
               + A+++   + TC+ L+  LS  GIS   +H      AR+ VLD + +    V++AT 
Sbjct:   252 QWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATD 311

Query:   204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                 GID   + +V +F++P+S   +    GR+GR
Sbjct:   312 IAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGR 346


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 138 (53.6 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 53/215 (24%), Positives = 93/215 (43%)

Query:    27 LTATPGFMSKLKKIHSRGLLNLVA--IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPI 83
             L ATPG +  L   ++  L  + A  +DEA  + S G        +L  +   LP     
Sbjct:   139 LVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFT-----EELEQVLAALPRQKQT 193

Query:    84 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKAN 143
             L  +AT   +V+   + +  L  PL       + +   +                ++K +
Sbjct:   194 LLFSATFPEEVR--ALTTKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLIKQH 251

Query:   144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203
               + A+++   + TC+ L+  LS  GIS   +H      AR+ VLD + +    V++AT 
Sbjct:   252 QWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATD 311

Query:   204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                 GID   + +V +F++P+S   +    GR+GR
Sbjct:   312 IAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGR 346


>DICTYBASE|DDB_G0281925 [details] [associations]
            symbol:DDB_G0281925 "DEAD/DEAH box helicase"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
            EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
            ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
            GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
            Uniprot:Q54T87
        Length = 586

 Score = 140 (54.3 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 55/221 (24%), Positives = 96/221 (43%)

Query:    30 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTA 88
             TPG ++ L + H    +  + +DEA  +   G  F P   ++ SL + +P +   L  +A
Sbjct:   241 TPGRLNDLLRKHHLSSVQYLVLDEADRMLDMG--FMP---QIESLIDQIPKERQTLMFSA 295

Query:    89 TAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-- 139
             T  PK  K ++ S  L++P+        L  S N       +               +  
Sbjct:   296 TW-PKEVK-LLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINK 353

Query:   140 -LKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQ 197
              L A+     IV+C E+  CD+   YLS    +     H+G + + R S L  +   R +
Sbjct:   354 ILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIR 413

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             +++AT     G+D   V+ V ++ +P ++E +    GR GR
Sbjct:   414 ILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGR 454


>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
            symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
            RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
            Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
            OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
        Length = 709

 Score = 141 (54.7 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 52/220 (23%), Positives = 91/220 (41%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVP 82
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++       P     
Sbjct:   368 LVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGSRQ 425

Query:    83 ILALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV 139
              +  +AT   ++Q   +D +E        V +      N+  +V +             +
Sbjct:   426 TMMFSATFPKEIQILARDFLEEYIFL--AVGRVGSTSENITQKVVW-VEENDKRSFLLDL 482

Query:   140 LKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 198
             L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S R  +
Sbjct:   483 LNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPI 542

Query:   199 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             +VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   543 MVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 582


>TAIR|locus:2057640 [details] [associations]
            symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
            OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
            RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
            SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
            EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
            GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
            ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
            Uniprot:P93008
        Length = 733

 Score = 141 (54.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 31/95 (32%), Positives = 48/95 (50%)

Query:   144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203
             G+  AIV+   +  CD ++  L   G      H G + + R   L+ + + R  V+VAT 
Sbjct:   575 GEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATD 634

Query:   204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
               G GID  DV  V ++++PK +E +    GR GR
Sbjct:   635 VVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGR 669


>UNIPROTKB|Q8EHT1 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 57/224 (25%), Positives = 94/224 (41%)

Query:    21 LYVTPELT-ATPGFMSKL-KKIH-SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 77
             L   P+L  ATPG +  L  + H S   +  + +DEA  +   G  F P  +KL ++   
Sbjct:   146 LSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMG--FWPDMQKLMAM--- 200

Query:    78 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKXXXXXXXX 134
             +P      L +   P+    +   L   +PL +++S  R  +  E+    Y         
Sbjct:   201 MPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGSKAQ 259

Query:   135 XXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194
                ++LK       +V+   R   D ++  L   GI+ AA H   +   RS  L D+ + 
Sbjct:   260 ALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKAD 319

Query:   195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             R QV+VAT     GI    + +V + ++P S   +    GR  R
Sbjct:   320 RIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTAR 363


>TIGR_CMR|SO_1136 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 57/224 (25%), Positives = 94/224 (41%)

Query:    21 LYVTPELT-ATPGFMSKL-KKIH-SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 77
             L   P+L  ATPG +  L  + H S   +  + +DEA  +   G  F P  +KL ++   
Sbjct:   146 LSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMG--FWPDMQKLMAM--- 200

Query:    78 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKXXXXXXXX 134
             +P      L +   P+    +   L   +PL +++S  R  +  E+    Y         
Sbjct:   201 MPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGSKAQ 259

Query:   135 XXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194
                ++LK       +V+   R   D ++  L   GI+ AA H   +   RS  L D+ + 
Sbjct:   260 ALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKAD 319

Query:   195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             R QV+VAT     GI    + +V + ++P S   +    GR  R
Sbjct:   320 RIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTAR 363


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 138 (53.6 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 60/241 (24%), Positives = 104/241 (43%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDVP 82
             L ATPG +  L+  ++  L  + ++ +DEA  +   G  HD R    KL + R  L    
Sbjct:   129 LVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNL---- 184

Query:    83 ILALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV 139
                 +AT +  + K + E L L NPL   V + +     +   V +             +
Sbjct:   185 --LFSATFSDDI-KALAEKL-LHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240

Query:   140 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 199
              K N     +V+   +   + L+  L+  GI  AA H   +  AR+  L D+ S   +V+
Sbjct:   241 GKGNWQQ-VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299

Query:   200 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 259
             VAT     G+D +++  V ++ +P   E +    GR GR     ++L    +D+ + +  
Sbjct:   300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359

Query:   260 I 260
             I
Sbjct:   360 I 360


>UNIPROTKB|A4QVP2 [details] [associations]
            symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
            RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
            EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
            Uniprot:A4QVP2
        Length = 396

 Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 32/115 (27%), Positives = 58/115 (50%)

Query:   146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205
             T A+++C  R   D L+  L+A   + +A H  ++   R  ++ ++ S   +V++AT   
Sbjct:   263 TQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLL 322

Query:   206 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260
               GID + V LV ++++P + E +    GR GR      ++ +   DD R M  I
Sbjct:   323 ARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI 377


>SGD|S000002428 [details] [associations]
            symbol:FAL1 "Nucleolar protein required for maturation of 18S
            rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
            EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
            OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
            RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
            SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
            STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
            GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
            CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
            Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
            Uniprot:Q12099
        Length = 399

 Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 49/221 (22%), Positives = 104/221 (47%)

Query:    27 LTATPG-FMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVP 82
             ++ TPG  +  +KK  + +R +  LV +DEA  + S    F+   +++  +   LP +  
Sbjct:   146 VSGTPGRVLDMIKKQMLQTRNVQMLV-LDEADELLSETLGFK---QQIYDIFAKLPKNCQ 201

Query:    83 ILALTATAAPKVQKDVMESL--CLQNP---LVLKSSFNRPNLFYEVRYKXXXXXXXXXXC 137
             ++ ++AT    + KD++E     + +P   LV +   +   +   V             C
Sbjct:   202 VVVVSAT----MNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLC 257

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
              +  +   T  +++C  +   D LS  L     +  + H  +  + R  V++D+ +   +
Sbjct:   258 DIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             V+++T  +  GID + V LV ++++P+ +E +    GR+GR
Sbjct:   318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGR 358


>MGI|MGI:1349406 [details] [associations]
            symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
            Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
            CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
            RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
            SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
            PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
            InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
            GermOnline:ENSMUSG00000069045 Uniprot:Q62095
        Length = 658

 Score = 144 (55.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 52/221 (23%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   319 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 375

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   376 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEELDKRSFLLD 432

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L     +C + H   + K R   L  + S RK 
Sbjct:   433 LLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKP 492

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   493 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 533

 Score = 39 (18.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query:   359 GGQYSEFWNRDDEASGSEEDISDCDGN 385
             GG Y  F+N D           D  GN
Sbjct:   632 GGGYGGFYNNDGYGGNYNSQAVDWWGN 658


>TIGR_CMR|SPO_1443 [details] [associations]
            symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
            ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
            PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
        Length = 471

 Score = 138 (53.6 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 58/248 (23%), Positives = 100/248 (40%)

Query:    27 LTATPGFMSKLKKIHSRGLL-----NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81
             L ATPG   +L     RG L      ++ +DEA  +   G  F P   ++ SL  +    
Sbjct:   127 LIATPG---RLLDHFERGKLLLTGVQIMVVDEADRMLDMG--FIPDIERIFSLTPFTRQT 181

Query:    82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-------LFYEVRYKXXXXXXXX 134
               L  +AT AP++++     L     + +               LF   R          
Sbjct:   182 --LFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRA 239

Query:   135 XXCSVLKANGDTC--AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 192
                +++ A G+ C  AI++C  +T  D ++  L   G   A  H  L+   R+  LD + 
Sbjct:   240 VLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFR 299

Query:   193 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252
               + +++VA+     G+D   V  V +F++P   E +    GR GR     K++      
Sbjct:   300 EGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPR 359

Query:   253 DRRRMEFI 260
             D + ++ I
Sbjct:   360 DEKALDAI 367


>MGI|MGI:103064 [details] [associations]
            symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
            X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
            "RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
            "mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
            catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
            of translation" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
            [GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=ISO]
            [GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
            "metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
            initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
            apoptotic signaling pathway via death domain receptors"
            evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
            "RNA secondary structure unwinding" evidence=ISO] [GO:0016020
            "membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030307 "positive regulation of cell growth" evidence=ISO]
            [GO:0030308 "negative regulation of cell growth" evidence=ISO]
            [GO:0031333 "negative regulation of protein complex assembly"
            evidence=ISO] [GO:0031369 "translation initiation factor binding"
            evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
            [GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
            assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
            binding" evidence=ISO] [GO:0043065 "positive regulation of
            apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
            of apoptotic process" evidence=ISO] [GO:0043154 "negative
            regulation of cysteine-type endopeptidase activity involved in
            apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=ISO] [GO:0045087 "innate immune response"
            evidence=ISO] [GO:0045727 "positive regulation of translation"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0045948
            "positive regulation of translational initiation" evidence=ISO]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=ISO]
            [GO:0071470 "cellular response to osmotic stress" evidence=ISO]
            [GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
            [GO:1900087 "positive regulation of G1/S transition of mitotic cell
            cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
            apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
            GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
            GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
            GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
            GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
            GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
            GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
            GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
            GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
            GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
            HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
            GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
            IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
            ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
            MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
            REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
            Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
            InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
            Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
        Length = 662

 Score = 140 (54.3 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 376

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   377 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEEIDKRSFLLD 433

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   434 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 493

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   494 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534


>RGD|1564771 [details] [associations]
            symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
            X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
            PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
            Uniprot:D4ADE8
        Length = 662

 Score = 140 (54.3 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 376

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   377 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEEIDKRSFLLD 433

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   434 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 493

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   494 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534


>TAIR|locus:2087832 [details] [associations]
            symbol:PMH1 "putative mitochondrial RNA helicase 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
            GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
            EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
            UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
            STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
            GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
            InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
            Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
        Length = 610

 Score = 139 (54.0 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 34/117 (29%), Positives = 53/117 (45%)

Query:   144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203
             G  C IV+   +   D L A+  A    C A H  ++   R   L  +      ++VAT 
Sbjct:   361 GGKC-IVFTQTKRDADRL-AFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATD 418

Query:   204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260
                 G+D  +V LV H+ +P + E F   +GR GR      ++L +G D  R ++ I
Sbjct:   419 VAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMI 475


>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
            symbol:PFE0215w "ATP-dependent helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0020011
            "apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
            ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
            GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
            HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
        Length = 755

 Score = 140 (54.3 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 60/241 (24%), Positives = 103/241 (42%)

Query:    27 LTATPG-FMSKLKKIHSRGLLNL--VAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDV 81
             LT TPG  +  ++K  +  L N+  V +DEA  + + G  HD     R LS++   L + 
Sbjct:   311 LTGTPGRIIDHIEK-KNLSLQNIKYVVLDEADEMLNLGFTHDIE---RILSNIN--LKEA 364

Query:    82 PILALTATAAPKVQKDVMESLCLQNPLVL-------KSSFNRPNLFYEVRYKXXXXXXXX 134
              +L  +AT  P   KD+  S  L+NP  +       K++ N  ++  +  Y         
Sbjct:   365 QVLLYSATT-PSWIKDI-SSKYLKNPFCIDVVDSSNKTAKNIKHIAIKTPYDIKEKALLL 422

Query:   135 XXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194
                 ++K+NG    I++   +   D L +  S   +S A  H  +    R   +  +   
Sbjct:   423 EDIILVKSNGGQ-VIIFTRTKLEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQG 481

Query:   195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254
               Q+++AT     G+D  +V LV     P     +   +GR GR      SL+ Y  +D+
Sbjct:   482 MFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYSNEDK 541

Query:   255 R 255
             +
Sbjct:   542 Q 542


>UNIPROTKB|Q8I457 [details] [associations]
            symbol:PFE0215w "ATP-dependent helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
            ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
            GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
            HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
        Length = 755

 Score = 140 (54.3 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 60/241 (24%), Positives = 103/241 (42%)

Query:    27 LTATPG-FMSKLKKIHSRGLLNL--VAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDV 81
             LT TPG  +  ++K  +  L N+  V +DEA  + + G  HD     R LS++   L + 
Sbjct:   311 LTGTPGRIIDHIEK-KNLSLQNIKYVVLDEADEMLNLGFTHDIE---RILSNIN--LKEA 364

Query:    82 PILALTATAAPKVQKDVMESLCLQNPLVL-------KSSFNRPNLFYEVRYKXXXXXXXX 134
              +L  +AT  P   KD+  S  L+NP  +       K++ N  ++  +  Y         
Sbjct:   365 QVLLYSATT-PSWIKDI-SSKYLKNPFCIDVVDSSNKTAKNIKHIAIKTPYDIKEKALLL 422

Query:   135 XXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194
                 ++K+NG    I++   +   D L +  S   +S A  H  +    R   +  +   
Sbjct:   423 EDIILVKSNGGQ-VIIFTRTKLEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQG 481

Query:   195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254
               Q+++AT     G+D  +V LV     P     +   +GR GR      SL+ Y  +D+
Sbjct:   482 MFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYSNEDK 541

Query:   255 R 255
             +
Sbjct:   542 Q 542


>POMBASE|SPAC1F5.10 [details] [associations]
            symbol:SPAC1F5.10 "ATP-dependent RNA helicase
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
            OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
            ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
            EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
            NextBio:20802696 Uniprot:Q10055
        Length = 394

 Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 50/232 (21%), Positives = 100/232 (43%)

Query:    14 GKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G    +L Y    ++ TPG ++ +   + + +R +  L+ +DEA  + + G  F+    +
Sbjct:   130 GNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLI-LDEADELLNQG--FK---EQ 183

Query:    71 LSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNLFYEVRYK 126
             +  +  YLP    ++ ++AT    V +  M +    NP   LV +       L       
Sbjct:   184 IYDIYRYLPPGTQVVVVSATLPQDVLE--MTNKFTTNPVRILVKRDELTLEGLKQYFIAV 241

Query:   127 XXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 186
                       C +      T A+++C  R   D L+  +     +  + H  +  K R +
Sbjct:   242 EKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDA 301

Query:   187 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++ D+     +V++ T  +  GID + V LV ++++P + E +    GR+GR
Sbjct:   302 IMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGR 353


>UNIPROTKB|B4DLW8 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003712 "transcription cofactor activity"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
            HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
            STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
            Uniprot:B4DLW8
        Length = 535

 Score = 138 (53.6 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   120 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 177

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   178 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 233

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   234 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 293

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   294 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 353

Query:   237 GR 238
              R
Sbjct:   354 AR 355


>UNIPROTKB|F1NIX2 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
            Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
        Length = 636

 Score = 139 (54.0 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   297 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 353

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   354 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEELDKRSFLLD 410

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   411 LLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 470

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   471 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 511


>UNIPROTKB|F1NIX1 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
            IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
            Uniprot:F1NIX1
        Length = 638

 Score = 139 (54.0 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   298 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 354

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   355 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEELDKRSFLLD 411

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   412 LLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 471

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   472 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 512


>ASPGD|ASPL0000037981 [details] [associations]
            symbol:AN2932 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
            PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
            Uniprot:Q5B948
        Length = 398

 Score = 136 (52.9 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 32/115 (27%), Positives = 57/115 (49%)

Query:   146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205
             T A+++C  R   D L+  L+A   + +A H  +    R  ++ ++ S   +V++AT   
Sbjct:   265 TQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLL 324

Query:   206 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260
               GID + V LV ++++P + E +    GR GR      ++ +   DD R M  I
Sbjct:   325 ARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI 379


>FB|FBgn0037573 [details] [associations]
            symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
            melanogaster" [GO:0016281 "eukaryotic translation initiation factor
            4F complex" evidence=ISS] [GO:0003743 "translation initiation
            factor activity" evidence=ISS] [GO:0006413 "translational
            initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
            oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
            DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
            GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
            EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
            STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
            InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
        Length = 399

 Score = 136 (52.9 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 53/249 (21%), Positives = 111/249 (44%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    ++ TPG  F M K + + +R +  LV +DEA  + + G  F+    +
Sbjct:   135 GEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLV-LDEADEMLNKG--FK---EQ 188

Query:    71 LSSLRNYLPDVP-ILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNLFYEVRYK 126
             +  +  YLP    ++ ++AT   ++ +  M S  + +P   LV +       +       
Sbjct:   189 IYDVYRYLPPATQVVLISATLPHEILE--MTSKFMTDPIRILVKRDELTLEGIKQFFVAV 246

Query:   127 XXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 186
                       C +      T A+++C  +   D L+  +     + ++ H  +  K R  
Sbjct:   247 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDE 306

Query:   187 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 246
             ++ ++ + + +V++ T  +  GID + V LV ++++P + E +    GR+GR      ++
Sbjct:   307 IMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366

Query:   247 LYYGMDDRR 255
              +   DD R
Sbjct:   367 NFVKSDDIR 375


>UNIPROTKB|D3IVZ2 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
            EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
            Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
        Length = 661

 Score = 139 (54.0 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIIE-QDTMPPKGVR 376

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   377 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEEADKRSFLLD 433

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   434 LLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 493

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   494 ILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGR 534


>WB|WBGene00018997 [details] [associations]
            symbol:F57B9.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
            GO:GO:0000003 GO:GO:0003676 GO:GO:0019915 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 GeneTree:ENSGT00530000062880 KO:K03257
            PIR:E88493 RefSeq:NP_498514.1 UniGene:Cel.32055
            ProteinModelPortal:Q20935 SMR:Q20935 STRING:Q20935 PaxDb:Q20935
            EnsemblMetazoa:F57B9.3 GeneID:186440 KEGG:cel:CELE_F57B9.3
            UCSC:F57B9.3 CTD:186440 WormBase:F57B9.3 InParanoid:Q20935
            NextBio:931850 Uniprot:Q20935
        Length = 363

 Score = 135 (52.6 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 58/219 (26%), Positives = 102/219 (46%)

Query:    27 LTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 85
             L  TP  F+S +    SR  + +  +DEA  + S G  F+    ++   R+   DV ++ 
Sbjct:   113 LMGTPKDFLSNIPSDTSR--IKMFVLDEADEMLSKG--FKDQIYEV--FRSMPQDVQVVL 166

Query:    86 LTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSVL 140
             L+AT   +V  DV     +++P   LV K       +  FY    K          C +L
Sbjct:   167 LSATMPSEVL-DVTNRF-MRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCL--CDLL 222

Query:   141 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200
             K + +T A+++C  R    +L+  L +  I  + +H  +    R  ++ D+ S   +V+V
Sbjct:   223 KTSRETQALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLV 282

Query:   201 AT--VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 237
              T  +A GM I RK   L+ ++++  +ME +   +GR G
Sbjct:   283 TTDLMARGMNI-RKS--LIINYDVSGNMENYMLRNGRQG 318


>UNIPROTKB|G3MYF0 [details] [associations]
            symbol:LOC100300937 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
            Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
        Length = 608

 Score = 138 (53.6 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 31/105 (29%), Positives = 52/105 (49%)

Query:   149 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208
             IV+   +   D+LS+ LS  GI   + H       R   L+D+ + R ++++AT     G
Sbjct:   450 IVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILIATDLAARG 509

Query:   209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
             +D  DV  V ++N P+++E +    GR GR     +S+     DD
Sbjct:   510 LDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDD 554


>UNIPROTKB|F1MBQ8 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
            class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
            receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
            receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0043517 "positive regulation of DNA damage response, signal
            transduction by p53 class mediator" evidence=IEA] [GO:0036002
            "pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
            of intracellular estrogen receptor signaling pathway" evidence=IEA]
            [GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0003713 "transcription coactivator activity"
            evidence=IEA] [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
            GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
            GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
            EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
            UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
            Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
            NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
        Length = 614

 Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   199 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 256

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   257 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   313 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 372

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   373 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432

Query:   237 GR 238
              R
Sbjct:   433 AR 434


>UNIPROTKB|J3KTA4 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003712 "transcription cofactor activity"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
            Ensembl:ENST00000578804 Uniprot:J3KTA4
        Length = 614

 Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   199 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 256

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   257 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   313 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 372

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   373 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432

Query:   237 GR 238
              R
Sbjct:   433 AR 434


>UNIPROTKB|P17844 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0001701 "in utero embryonic development" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
            evidence=IEA] [GO:0045069 "regulation of viral genome replication"
            evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
            [GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0043517 "positive regulation of DNA damage response, signal
            transduction by p53 class mediator" evidence=IMP] [GO:0072332
            "intrinsic apoptotic signaling pathway by p53 class mediator"
            evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
            "regulation of skeletal muscle cell differentiation" evidence=ISS]
            [GO:0045667 "regulation of osteoblast differentiation"
            evidence=ISS] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0050681
            "androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
            of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
            "positive regulation of intracellular estrogen receptor signaling
            pathway" evidence=IDA] [GO:0003713 "transcription coactivator
            activity" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
            "pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
            GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
            GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
            GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
            GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
            EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
            RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
            PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
            IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
            DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
            PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
            Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
            CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
            HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
            InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
            EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
            ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
            Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
        Length = 614

 Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   199 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 256

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   257 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   313 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 372

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   373 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432

Query:   237 GR 238
              R
Sbjct:   433 AR 434


>UNIPROTKB|Q4R6M5 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
            HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
            Uniprot:Q4R6M5
        Length = 614

 Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   199 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 256

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   257 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   313 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 372

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   373 GDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432

Query:   237 GR 238
              R
Sbjct:   433 AR 434


>UNIPROTKB|Q5R4I9 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
            GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
            RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
            PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
            Uniprot:Q5R4I9
        Length = 614

 Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   199 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 256

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   257 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   313 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 372

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   373 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432

Query:   237 GR 238
              R
Sbjct:   433 AR 434


>MGI|MGI:105037 [details] [associations]
            symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
            species:10090 "Mus musculus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0001701 "in utero embryonic development"
            evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IDA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
            "nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
            receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=ISO]
            [GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
            replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=IMP] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
            evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
            [GO:0060765 "regulation of androgen receptor signaling pathway"
            evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
            p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
            skeletal muscle cell differentiation" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
            GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
            GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
            GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
            ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
            UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
            DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
            PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
            Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
        Length = 614

 Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   199 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 256

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   257 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   313 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 372

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   373 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432

Query:   237 GR 238
              R
Sbjct:   433 AR 434


>RGD|619906 [details] [associations]
            symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
            "Rattus norvegicus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
            development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
            activity" evidence=ISO] [GO:0003713 "transcription coactivator
            activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
            evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
            rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
            evidence=IDA] [GO:0030331 "estrogen receptor binding"
            evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
            "pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
            replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
            evidence=IDA] [GO:0050681 "androgen receptor binding"
            evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
            signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
            signaling pathway by p53 class mediator" evidence=IEA;ISO]
            [GO:2001014 "regulation of skeletal muscle cell differentiation"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
            GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
            GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
            EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
            GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
            EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
            UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
            Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
            UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
            Genevestigator:Q6AYI1 Uniprot:Q6AYI1
        Length = 615

 Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   199 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 256

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   257 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   313 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 372

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   373 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432

Query:   237 GR 238
              R
Sbjct:   433 AR 434


>WB|WBGene00018007 [details] [associations]
            symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
            "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0018996 "molting
            cycle, collagen and cuticulin-based cuticle" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
            GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
            EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
            ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
            MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
            EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
            KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
            WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
        Length = 399

 Score = 135 (52.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 56/251 (22%), Positives = 113/251 (45%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    ++ TPG  F M + + + +R +  L+ +DEA  + + G  F+    +
Sbjct:   135 GEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAI-KLLVLDEADEMLNKG--FK---EQ 188

Query:    71 LSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE-VRYKXX 128
             L  +  YLP    ++ L+AT   ++ +  M S  + +P+  +    R  L  E ++    
Sbjct:   189 LYDIYRYLPPGAQVVLLSATLPHEILE--MTSKFMTDPI--RILVKRDELTLEGIKQFFV 244

Query:   129 XXXXXXXXCSVLKANGDTC----AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 184
                        L    DT     A+++C  R   D L+  +     + ++ H  +  K R
Sbjct:   245 AVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDR 304

Query:   185 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
               V+ ++ +   +V+++T  +  G+D   V LV ++++P + E +    GR+GR      
Sbjct:   305 DEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 364

Query:   245 SLLYYGMDDRR 255
             ++ +   DD R
Sbjct:   365 AINFVKQDDVR 375


>WB|WBGene00022029 [details] [associations]
            symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0018996 "molting cycle, collagen and
            cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
            GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
            GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
            RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
            STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
            KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
            InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
        Length = 399

 Score = 135 (52.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 56/251 (22%), Positives = 113/251 (45%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    ++ TPG  F M + + + +R +  L+ +DEA  + + G  F+    +
Sbjct:   135 GEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAI-KLLVLDEADEMLNKG--FK---EQ 188

Query:    71 LSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE-VRYKXX 128
             L  +  YLP    ++ L+AT   ++ +  M S  + +P+  +    R  L  E ++    
Sbjct:   189 LYDIYRYLPPGAQVVLLSATLPHEILE--MTSKFMTDPI--RILVKRDELTLEGIKQFFV 244

Query:   129 XXXXXXXXCSVLKANGDTC----AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 184
                        L    DT     A+++C  R   D L+  +     + ++ H  +  K R
Sbjct:   245 AVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDR 304

Query:   185 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
               V+ ++ +   +V+++T  +  G+D   V LV ++++P + E +    GR+GR      
Sbjct:   305 DEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 364

Query:   245 SLLYYGMDDRR 255
             ++ +   DD R
Sbjct:   365 AINFVKQDDVR 375


>UNIPROTKB|A7E307 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
            CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
            GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
            IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
            Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
            InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
        Length = 650

 Score = 138 (53.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 62/242 (25%), Positives = 102/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   197 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV-LDEADRMLDM 254

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D +      N   L+ S N  
Sbjct:   255 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHN 310

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   311 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 370

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                +   R  VL+++ S +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   371 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430

Query:   237 GR 238
              R
Sbjct:   431 AR 432


>UNIPROTKB|E2RJ60 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
            Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
        Length = 650

 Score = 138 (53.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 62/242 (25%), Positives = 102/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   197 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV-LDEADRMLDM 254

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D +      N   L+ S N  
Sbjct:   255 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHN 310

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   311 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 370

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                +   R  VL+++ S +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   371 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430

Query:   237 GR 238
              R
Sbjct:   431 AR 432


>MGI|MGI:1914290 [details] [associations]
            symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0072358 "cardiovascular system
            development" evidence=IMP] [GO:2001014 "regulation of skeletal
            muscle cell differentiation" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
            GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
            GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
            ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
            EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
            RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
            UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
            IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
            REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
            GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
            InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
            CleanEx:MM_DDX17 Genevestigator:Q501J6
            GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
        Length = 650

 Score = 138 (53.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 62/242 (25%), Positives = 102/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   197 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV-LDEADRMLDM 254

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D +      N   L+ S N  
Sbjct:   255 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHN 310

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   311 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 370

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                +   R  VL+++ S +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   371 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430

Query:   237 GR 238
              R
Sbjct:   431 AR 432


>UNIPROTKB|C9JMU5 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
            HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
            STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
            ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
        Length = 652

 Score = 138 (53.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 65/244 (26%), Positives = 105/244 (43%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   197 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV-LDEADRMLDM 254

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D +      N   L+ S N  
Sbjct:   255 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHN 310

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   311 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 370

Query:   177 AGLNDKARSSVLDDWISSRKQVVVAT-VAF-GMGIDRKDVRLVCHFNIPKSMEAFYQESG 234
                +   R  VL+++ S +  +++AT VA  G+G D +DV+ V +++ P S E +    G
Sbjct:   371 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIG 430

Query:   235 RAGR 238
             R  R
Sbjct:   431 RTAR 434


>UNIPROTKB|B4E132 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
            HOGENOM:HOG000268804 HOVERGEN:HBG015893 UniGene:Hs.99120
            HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK303638 IPI:IPI00908506
            ProteinModelPortal:B4E132 SMR:B4E132 STRING:B4E132
            Ensembl:ENST00000420730 Uniprot:B4E132
        Length = 407

 Score = 135 (52.6 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 29/101 (28%), Positives = 50/101 (49%)

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   179 ILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 238

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +VR V +F++P  +E +    GR GR
Sbjct:   239 ILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGR 279


>UNIPROTKB|F1PEA6 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=IEA] [GO:0003712 "transcription cofactor
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
            Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
        Length = 671

 Score = 138 (53.6 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 62/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   256 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 313

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   314 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 369

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   370 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 429

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   430 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 489

Query:   237 GR 238
              R
Sbjct:   490 AR 491


>FB|FBgn0003261 [details] [associations]
            symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
            evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
            chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
            GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
            GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
            EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
            RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
            RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
            RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
            ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
            MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
            EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
            CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
            OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
            Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
        Length = 719

 Score = 138 (53.6 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 56/244 (22%), Positives = 103/244 (42%)

Query:    29 ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILA 85
             ATPG +       S  L     + +DEA  +   G  F P  RK+ S +R   PD   L 
Sbjct:   410 ATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMG--FEPQIRKIVSQIR---PDRQTLM 464

Query:    86 LTATAAPKVQKDVMESLC---LQ---NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV 139
              +AT  PK  K + E      +Q     L L ++ N   +  +V  +           S 
Sbjct:   465 WSATW-PKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVV-DVCDEFSKEEKLKTLLSD 522

Query:   140 LKANGDTCA--IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +    ++    I++   +   D L  ++ + G+ C A H   +   R  VL ++ S +  
Sbjct:   523 IYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSN 582

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257
             ++VAT     G+D   ++ V +F+ P++ E +    GR GR      S  ++  ++ ++ 
Sbjct:   583 ILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQA 642

Query:   258 EFIL 261
             + ++
Sbjct:   643 KALV 646


>UNIPROTKB|Q92841 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0033148 "positive
            regulation of intracellular estrogen receptor signaling pathway"
            evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
            skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
            EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
            GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
            EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
            IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
            RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
            ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
            MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
            REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
            DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
            UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
            HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
            HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
            GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
            CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
            GO:GO:2001014 Uniprot:Q92841
        Length = 729

 Score = 138 (53.6 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 62/242 (25%), Positives = 102/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   276 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV-LDEADRMLDM 333

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D +      N   L+ S N  
Sbjct:   334 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHN 389

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   390 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 449

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                +   R  VL+++ S +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   450 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 509

Query:   237 GR 238
              R
Sbjct:   510 AR 511


>UNIPROTKB|H3BLZ8 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IEA] [GO:0072358
            "cardiovascular system development" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
            ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
            Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
        Length = 731

 Score = 138 (53.6 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 62/242 (25%), Positives = 102/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   276 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV-LDEADRMLDM 333

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D +      N   L+ S N  
Sbjct:   334 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHN 389

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   390 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 449

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                +   R  VL+++ S +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   450 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 509

Query:   237 GR 238
              R
Sbjct:   510 AR 511


>UNIPROTKB|F1PID8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
            Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
        Length = 736

 Score = 138 (53.6 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 62/242 (25%), Positives = 102/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   278 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV-LDEADRMLDM 335

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D +      N   L+ S N  
Sbjct:   336 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHN 391

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   392 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 451

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                +   R  VL+++ S +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   452 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 511

Query:   237 GR 238
              R
Sbjct:   512 AR 513


>UNIPROTKB|F1SKQ0 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
            EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
        Length = 736

 Score = 138 (53.6 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 62/242 (25%), Positives = 102/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   278 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV-LDEADRMLDM 335

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D +      N   L+ S N  
Sbjct:   336 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHN 391

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V  +             + A  +   I++   +  CD+L+  +   G      H
Sbjct:   392 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 451

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                +   R  VL+++ S +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   452 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 511

Query:   237 GR 238
              R
Sbjct:   512 AR 513


>UNIPROTKB|I3LHW0 [details] [associations]
            symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
            Uniprot:I3LHW0
        Length = 621

 Score = 137 (53.3 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 31/105 (29%), Positives = 52/105 (49%)

Query:   149 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208
             IV+   +   D+LS+ LS  GI   + H       R   LDD+ + + ++++AT     G
Sbjct:   464 IVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRG 523

Query:   209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
             +D  DV  V ++N P+++E +    GR GR     +S+     DD
Sbjct:   524 LDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDD 568


>UNIPROTKB|F1NQ09 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
            IPI:IPI00819782 ProteinModelPortal:F1NQ09
            Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
        Length = 451

 Score = 135 (52.6 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 52/217 (23%), Positives = 97/217 (44%)

Query:    29 ATPGFMSKLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 85
             ATPG ++ L+    I+ + +  LV +DEA  +   G  F P   K+  L +  PD   + 
Sbjct:   182 ATPGRLNDLQMNNFINLKSITYLV-LDEADRMLDMG--FEPQIMKI--LIDVRPDRQTVM 236

Query:    86 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGD 145
             ++AT    V++ + +S  L+NP+++            V  K             ++ N  
Sbjct:   237 MSATWPDGVRR-LAKSY-LRNPMIVYVG-TLDLAVSGVVLKYLQFDKDIFTWKYMQVNAQ 293

Query:   146 T-CA---IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 201
             + C    +V+       D++++ L   G+   + H       R   LDD+   + +++VA
Sbjct:   294 SFCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVA 353

Query:   202 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             T     G+D  D+  V +F+ P+++E +    GR GR
Sbjct:   354 TDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGR 390


>UNIPROTKB|F1SQ03 [details] [associations]
            symbol:LOC100524536 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
            ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
            GeneID:100524536 Uniprot:F1SQ03
        Length = 630

 Score = 137 (53.3 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 31/105 (29%), Positives = 52/105 (49%)

Query:   149 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208
             IV+   +   D+LS+ LS  GI   + H       R   LDD+ + + ++++AT     G
Sbjct:   473 IVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRG 532

Query:   209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
             +D  DV  V ++N P+++E +    GR GR     +S+     DD
Sbjct:   533 LDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDD 577


>UNIPROTKB|F1NL04 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
            of protein localization" evidence=IEA] [GO:0033391 "chromatoid
            body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
            GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
            EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
            Ensembl:ENSGALT00000038830 Uniprot:F1NL04
        Length = 542

 Score = 136 (52.9 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 63/260 (24%), Positives = 115/260 (44%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI-----DEAHCISSWG 61
             IY    +G    +++     L ATPG   +L  I  +G ++LV +     DEA  +   G
Sbjct:   278 IYGGTQTGHSIRQIMQGCNILCATPG---RLLDIIEKGKISLVEVKYLVLDEADRMLDMG 334

Query:    62 HDFRPSYRKLSSLRNYLPDVP------ILALTATAAPKVQKDVMESLCLQNP-LVLKSSF 114
               F    +KL S   Y P++P       L  +AT   +VQ+   E L      LV+ ++ 
Sbjct:   335 --FGLDMKKLIS---Y-PEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTC 388

Query:   115 NRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAA 174
                +   +   +            +L++ G    +V+   +   D L+A+L    +   +
Sbjct:   389 GACSDVQQNILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTS 448

Query:   175 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 234
              H     + R   L D+ S + Q++VAT     G+D ++V+ V +F++P ++E +    G
Sbjct:   449 IHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIG 508

Query:   235 RAGRDQLPSKSLLYYGMDDR 254
             R GR     K++ ++  DD+
Sbjct:   509 RTGRCGNTGKAVSFF--DDQ 526


>UNIPROTKB|Q9NXZ2 [details] [associations]
            symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
            IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
            ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
            PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
            Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
            CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
            HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
            InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
            ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
            Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
            GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
        Length = 648

 Score = 137 (53.3 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 52/218 (23%), Positives = 97/218 (44%)

Query:    27 LTATPGFMSKLKKIHSRGLLNL--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG ++ L+  +   L N+  + +DEA  +   G  F P   K+  L +  PD   +
Sbjct:   369 IIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMG--FEPQIMKI--LLDVRPDRQTV 424

Query:    85 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV---LK 141
               +AT    V + + +S  L+ P+++            V+              +   L+
Sbjct:   425 MTSATWPHSVHR-LAQSY-LKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQ 482

Query:   142 ANGDTC-AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200
             +   T   IV+   +   D LS+ L  G IS  + H     + R   L+++ + + ++++
Sbjct:   483 SMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILI 542

Query:   201 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             AT     G+D  DV  V +F+ P+++E +    GR GR
Sbjct:   543 ATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGR 580


>UNIPROTKB|E9PT29 [details] [associations]
            symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
            PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
        Length = 651

 Score = 137 (53.3 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 54/216 (25%), Positives = 92/216 (42%)

Query:    29 ATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 86
             ATPG +  L+  K + R    LV +DEA  +   G  F P  RK+  +    PD   L  
Sbjct:   221 ATPGRIDFLESGKTNLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMW 275

Query:    87 TATAAPKVQK---DVMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKA 142
             +AT   +V++   D +      N   L+ S N   L   +V  +             + A
Sbjct:   276 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 335

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
               +   I++   +  CD+L+  +   G      H   +   R  VL+++ S +  +++AT
Sbjct:   336 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 395

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                  G+D +DV+ V +++ P S E +    GR  R
Sbjct:   396 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTAR 431


>UNIPROTKB|F1N991 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
            meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
            [GO:0032880 "regulation of protein localization" evidence=IEA]
            [GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
            "perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
            GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
            OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
            IPI:IPI00819436 ProteinModelPortal:F1N991
            Ensembl:ENSGALT00000023724 Uniprot:F1N991
        Length = 568

 Score = 136 (52.9 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 63/260 (24%), Positives = 115/260 (44%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI-----DEAHCISSWG 61
             IY    +G    +++     L ATPG   +L  I  +G ++LV +     DEA  +   G
Sbjct:   278 IYGGTQTGHSIRQIMQGCNILCATPG---RLLDIIEKGKISLVEVKYLVLDEADRMLDMG 334

Query:    62 HDFRPSYRKLSSLRNYLPDVP------ILALTATAAPKVQKDVMESLCLQNP-LVLKSSF 114
               F    +KL S   Y P++P       L  +AT   +VQ+   E L      LV+ ++ 
Sbjct:   335 --FGLDMKKLIS---Y-PEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTC 388

Query:   115 NRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAA 174
                +   +   +            +L++ G    +V+   +   D L+A+L    +   +
Sbjct:   389 GACSDVQQNILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTS 448

Query:   175 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 234
              H     + R   L D+ S + Q++VAT     G+D ++V+ V +F++P ++E +    G
Sbjct:   449 IHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIG 508

Query:   235 RAGRDQLPSKSLLYYGMDDR 254
             R GR     K++ ++  DD+
Sbjct:   509 RTGRCGNTGKAVSFF--DDQ 526


>UNIPROTKB|I3LV06 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
            Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
            Uniprot:I3LV06
        Length = 607

 Score = 136 (52.9 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 62/235 (26%), Positives = 100/235 (42%)

Query:    16 PSL-RLLYVTPELTATPGFMSKLKKIHS--RGLLNLVAIDEAHCISSWGHDFRPSYRKLS 72
             P L RL      + ATPG +  + K  S   G + +V +DEA  +   G  F+     L 
Sbjct:   302 PQLHRLRQRVQVIIATPGRLLDIMKQSSVDLGNIKIVVVDEADTMLKMG--FQEQV--LD 357

Query:    73 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPN-------LFYEVR 124
              L N   D   + ++AT   ++++  + S  L +P+ VL    N P        L+ E  
Sbjct:   358 VLENVPQDCQTILVSATIPTRIEQ--LASRLLHDPVRVLAGEKNLPCPSVRQIVLWVEEP 415

Query:   125 YKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELS-AYLSAGGISCAAYHAGLNDKA 183
              K            + K        V C  +   D LS A     G+   + H+  +   
Sbjct:   416 AKKKKLFEILNDKKLFKP--PVLVFVDC--KLGADLLSEAVEKITGLKSTSMHSEKSQIE 471

Query:   184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             R ++L+  +     VVV+T   G G+D   V+LV +F++P SM+ +  + GR GR
Sbjct:   472 RKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVGR 526


>UNIPROTKB|Q9KS53 [details] [associations]
            symbol:VC1407 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 133 (51.9 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 54/258 (20%), Positives = 114/258 (44%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSWGHD 63
             ++  +D      RL+     L ATPG +  L   + ++   +  +V +DEA  +   G  
Sbjct:   107 VFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEI-EMVVLDEADRMLDMG-- 163

Query:    64 FRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNL 119
             F  S  K+      LP +V  L  +AT + KV++  +    +++P  +  + N   + N+
Sbjct:   164 FIESINKIIDC---LPSEVQFLLFSATLSRKVRE--LAKTAVRDPHEISIAANQASKSNI 218

Query:   120 FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179
                +               + +   D  A+++   +    +L + L   GI   A+H+G 
Sbjct:   219 SQWLITVDKDTKSALLSHLINEQQWDQ-ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGR 277

Query:   180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239
             +   R+ +L+D+ S + + +VAT     GID   +  V ++++P   + +    GR GR 
Sbjct:   278 SQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRA 337

Query:   240 QLPSKSLLYYGMDDRRRM 257
             +   +++ +   D+ + +
Sbjct:   338 EAVGEAISFVSKDNFKNL 355


>TIGR_CMR|VC_1407 [details] [associations]
            symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 133 (51.9 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 54/258 (20%), Positives = 114/258 (44%)

Query:     7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSWGHD 63
             ++  +D      RL+     L ATPG +  L   + ++   +  +V +DEA  +   G  
Sbjct:   107 VFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEI-EMVVLDEADRMLDMG-- 163

Query:    64 FRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNL 119
             F  S  K+      LP +V  L  +AT + KV++  +    +++P  +  + N   + N+
Sbjct:   164 FIESINKIIDC---LPSEVQFLLFSATLSRKVRE--LAKTAVRDPHEISIAANQASKSNI 218

Query:   120 FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179
                +               + +   D  A+++   +    +L + L   GI   A+H+G 
Sbjct:   219 SQWLITVDKDTKSALLSHLINEQQWDQ-ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGR 277

Query:   180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239
             +   R+ +L+D+ S + + +VAT     GID   +  V ++++P   + +    GR GR 
Sbjct:   278 SQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRA 337

Query:   240 QLPSKSLLYYGMDDRRRM 257
             +   +++ +   D+ + +
Sbjct:   338 EAVGEAISFVSKDNFKNL 355


>ASPGD|ASPL0000055571 [details] [associations]
            symbol:AN1266 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
            EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
            OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
            RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
            EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
            Uniprot:Q5BDW4
        Length = 1173

 Score = 139 (54.0 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 56/240 (23%), Positives = 99/240 (41%)

Query:    27 LTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81
             +  TPG M  L   ++  + NL     V +DEA  +   G  F P   K+  L N  PD 
Sbjct:   668 IVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMKI--LSNVRPDR 723

Query:    82 PILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNL--FYEVRYKXXXXXXXXXXCS 138
               +  +AT    ++    ++L     +V+   S   P +    EV  +            
Sbjct:   724 QTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLG 783

Query:   139 VLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 195
              L +   N D  ++++   +   D L   L   G  C + H G +   R S ++D+ +  
Sbjct:   784 NLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 843

Query:   196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255
               V++AT     G+D K ++LV +++ P  +E +   +GR GR      ++ +   D  R
Sbjct:   844 FPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQER 903


>UNIPROTKB|I3LDV0 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
            Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
        Length = 667

 Score = 141 (54.7 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   321 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 377

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   378 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEESDKRSFLLD 434

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   435 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 494

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   495 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 535

 Score = 38 (18.4 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query:   352 SSQDMTDGGQYSEFWNRDDEASGSEEDISDCDGN 385
             SS+  + GG Y  F+N D           D  GN
Sbjct:   635 SSRGFSGGG-YGSFYNSDGYGGNYNSQGVDWWGN 667


>ZFIN|ZDB-GENE-040426-915 [details] [associations]
            symbol:eif4a3 "eukaryotic translation initiation
            factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
            GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
            UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
            PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
            NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
        Length = 406

 Score = 133 (51.9 bits), Expect = 7.7e-06, P = 7.7e-06
 Identities = 54/253 (21%), Positives = 108/253 (42%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    +  TPG  F M + + + +R +  LV +DEA  + + G  F+    +
Sbjct:   142 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV-LDEADEMLNKG--FK---EQ 195

Query:    71 LSSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             +  +  YLP    + L +   P        K   D +  L  ++ L L+        F  
Sbjct:   196 IYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI---KQFFVA 252

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             V  +          C +      T A+++C  +   D L+  +     + ++ H  +  K
Sbjct:   253 VEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 309

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R S++ ++ S   +V+++T  +  G+D   V L+ ++++P + E +    GR+GR    
Sbjct:   310 ERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRK 369

Query:   243 SKSLLYYGMDDRR 255
               ++ +   DD R
Sbjct:   370 GVAINFVKNDDIR 382


>UNIPROTKB|E2RRQ7 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
            Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
        Length = 706

 Score = 136 (52.9 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   362 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 418

Query:    84 --LALTATAAPKVQ---KDVM-ESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC 137
               +  +AT   ++Q   +D + E + L    V  +S N       V  +           
Sbjct:   419 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVE-ESDKRSFLLDLL 477

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +  ++  D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   478 NATESGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 537

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   538 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 578


>UNIPROTKB|F1NM08 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
            ArrayExpress:F1NM08 Uniprot:F1NM08
        Length = 595

 Score = 135 (52.6 bits), Expect = 8.6e-06, P = 8.6e-06
 Identities = 61/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   187 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLV-LDEADRMLDM 244

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   245 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHN 300

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CD+L+  +   G      H
Sbjct:   301 ILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIH 360

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   361 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 420

Query:   237 GR 238
              R
Sbjct:   421 AR 422


>UNIPROTKB|F1NXI3 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0003713 "transcription coactivator
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
            receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=IEA]
            [GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
            GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
            GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
            ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
            ArrayExpress:F1NXI3 Uniprot:F1NXI3
        Length = 603

 Score = 135 (52.6 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 61/242 (25%), Positives = 103/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E+  ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   195 TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLV-LDEADRMLDM 252

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   253 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHN 308

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CD+L+  +   G      H
Sbjct:   309 ILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIH 368

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   369 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 428

Query:   237 GR 238
              R
Sbjct:   429 AR 430


>UNIPROTKB|A5A6J2 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
            CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
            UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
            GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
            Uniprot:A5A6J2
        Length = 614

 Score = 135 (52.6 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 62/242 (25%), Positives = 102/242 (42%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPE-LTATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T IY     G P +R L    E   ATPG  +  L+  K + R    LV +DEA  +   
Sbjct:   199 TCIYGGAPKG-PQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLV-LDEADRMLDM 256

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRP 117
             G  F P  RK+  +    PD   L  +AT   +V++   D ++     N   L+ S N  
Sbjct:   257 G--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312

Query:   118 NL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
              L   +V +              + +  +   IV+   +  CDEL+  +   G      H
Sbjct:   313 ILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH 372

Query:   177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
                + + R  VL+++   +  +++AT     G+D +DV+ V +++ P S E +    GR 
Sbjct:   373 GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432

Query:   237 GR 238
              R
Sbjct:   433 AR 434


>UNIPROTKB|G5E631 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
            signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
            of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
            "intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
            "cellular response to osmotic stress" evidence=IEA] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=IEA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
            "positive regulation of translational initiation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
            response" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0043024 "ribosomal small subunit
            binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
            evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
            "negative regulation of protein complex assembly" evidence=IEA]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA]
            [GO:0030307 "positive regulation of cell growth" evidence=IEA]
            [GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
            "response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
            signaling pathway via death domain receptors" evidence=IEA]
            [GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
            OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
            PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
            KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
        Length = 661

 Score = 141 (54.7 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   319 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 375

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   376 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEESDKRSFLLD 432

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   433 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 492

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   493 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 533

 Score = 37 (18.1 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query:   359 GGQYSEFWNRDDEASGSEEDISDCDGN 385
             GG Y  F+N D           D  GN
Sbjct:   635 GGGYGSFYNSDGYGGNYNSQGVDWWGN 661


>POMBASE|SPAC1006.07 [details] [associations]
            symbol:SPAC1006.07 "translation initiation factor eIF4A
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
            "cytoplasmic translational initiation" evidence=NAS] [GO:0003743
            "translation initiation factor activity" evidence=ISO] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
            "ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
            "eukaryotic translation initiation factor 4F complex" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
            EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
            ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
            EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
            OMA:PILEMED NextBio:20803983 Uniprot:P47943
        Length = 392

 Score = 132 (51.5 bits), Expect = 9.5e-06, P = 9.5e-06
 Identities = 56/245 (22%), Positives = 107/245 (43%)

Query:    27 LTATPGFMSKLKKIHSRGL----LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 82
             +  TPG +  +  I  R L    + +  +DEA  + S G  F+     +  L    P   
Sbjct:   141 VVGTPGRVHDM--IQRRALPTDAVQMFVLDEADEMLSRG--FKDQIYDIFQLLP--PTAQ 194

Query:    83 ILALTATAAPKVQKDVME--SLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXX 135
             ++ L+AT    + +DV+E  +  +++P   LV K       +  FY    K         
Sbjct:   195 VVLLSAT----MPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTL- 249

Query:   136 XCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 195
              C + +    T A+++C  R   D L+  L+    + ++ H  ++   R +++ ++ +  
Sbjct:   250 -CDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGS 308

Query:   196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255
              ++++ T     GID + V LV ++++P + E +    GR GR      S+ +   DD R
Sbjct:   309 SRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVR 368

Query:   256 RMEFI 260
              M  I
Sbjct:   369 MMREI 373


>SGD|S000001767 [details] [associations]
            symbol:TIF1 "Translation initiation factor eIF4A"
            species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
            initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006413 "translational
            initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
            "eukaryotic translation initiation factor 4F complex"
            evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
            SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
            EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
            OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
            EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
            RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
            PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
            PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
            SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
            STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
            EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
            KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
            EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
            GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
        Length = 395

 Score = 132 (51.5 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 54/225 (24%), Positives = 102/225 (45%)

Query:    27 LTATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG  F +  ++      + +  +DEA  + S G  F+    ++ +L    P   ++
Sbjct:   143 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQIFTLLP--PTTQVV 198

Query:    85 ALTATAAPKVQKDVME--SLCLQNP---LVLKSSFNRPNL--FY----EVRYKXXXXXXX 133
              L+AT    +  DV+E  +  ++NP   LV K       +  FY    E  YK       
Sbjct:   199 LLSAT----MPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDL 254

Query:   134 XXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193
                 SV      T A+++C  R   +EL+  L     + +A ++ L  + R +++ ++ S
Sbjct:   255 YDSISV------TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 308

Query:   194 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                +++++T     GID + V LV ++++P + E +    GR GR
Sbjct:   309 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 353


>SGD|S000003674 [details] [associations]
            symbol:TIF2 "Translation initiation factor eIF4A"
            species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
            initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
            initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0006413 "translational initiation"
            evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
            GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
            OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
            EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
            RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
            PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
            PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
            SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
            STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
            EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
            KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
            EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
            GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
        Length = 395

 Score = 132 (51.5 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 54/225 (24%), Positives = 102/225 (45%)

Query:    27 LTATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG  F +  ++      + +  +DEA  + S G  F+    ++ +L    P   ++
Sbjct:   143 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQIFTLLP--PTTQVV 198

Query:    85 ALTATAAPKVQKDVME--SLCLQNP---LVLKSSFNRPNL--FY----EVRYKXXXXXXX 133
              L+AT    +  DV+E  +  ++NP   LV K       +  FY    E  YK       
Sbjct:   199 LLSAT----MPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDL 254

Query:   134 XXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193
                 SV      T A+++C  R   +EL+  L     + +A ++ L  + R +++ ++ S
Sbjct:   255 YDSISV------TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 308

Query:   194 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
                +++++T     GID + V LV ++++P + E +    GR GR
Sbjct:   309 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 353


>ZFIN|ZDB-GENE-031030-2 [details] [associations]
            symbol:eif4a1a "eukaryotic translation initiation
            factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
            "helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0003743 "translation
            initiation factor activity" evidence=IEA] [GO:0006413
            "translational initiation" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
            KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
            IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
            STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
            KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
            Uniprot:Q802C9
        Length = 406

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 52/241 (21%), Positives = 106/241 (43%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG +  +  ++  S   + + A+DEA  + S G  F+    ++   +    D  ++
Sbjct:   155 VVGTPGRVFDMLNRRYLSPKYIKMFALDEADEMLSRG--FKDQIYEI--FQKLATDTQVI 210

Query:    85 ALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSV 139
              L+AT   +V +  + +  +++P   LV K       +  FY +  +          C +
Sbjct:   211 LLSATMPQEVLE--VTTKFMRDPVRILVKKEELTLEGIRQFY-INVEKEEWKLDTL-CDL 266

Query:   140 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 199
              +    T A+++   R   D L+  + A   + +A H  +  K R  ++ ++ S   +V+
Sbjct:   267 YETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMEQKERDVIMKEFRSGSSRVL 326

Query:   200 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 259
             + T     GID + V LV ++++P + E +    GR GR      ++     DD+R +  
Sbjct:   327 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMITEDDKRTLRD 386

Query:   260 I 260
             I
Sbjct:   387 I 387


>FB|FBgn0030631 [details] [associations]
            symbol:CG6227 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
            EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
            EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
            RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
            EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
            UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
            Uniprot:Q9VXW2
        Length = 1224

 Score = 138 (53.6 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 53/221 (23%), Positives = 96/221 (43%)

Query:    27 LTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81
             +  TPG M  +   +S  + NL     V +DEA  +   G  F P   ++  + N  PD 
Sbjct:   637 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMRI--IDNVRPDR 692

Query:    82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLK 141
               +  +AT  P+ Q + +    L+ P+ +     R  +  EV               +L+
Sbjct:   693 QTVMFSATF-PR-QMEALARRILKKPIEVIVG-GRSVVCKEVEQHVVILNDDAKFFKLLE 749

Query:   142 ANG---DTCAIVYCLERT-TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
               G   +  +I+  +++    D L   L      C + H G++   R S + D+ S + +
Sbjct:   750 LLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVR 809

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             +++AT     G+D KD+ LV ++++P   E +    GR GR
Sbjct:   810 LLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGR 850


>UNIPROTKB|Q2NL22 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045727 "positive regulation of translation"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0017148 "negative regulation of translation"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
            GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
            GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
            GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
            IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
            ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
            Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
            InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
            Uniprot:Q2NL22
        Length = 411

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 54/253 (21%), Positives = 108/253 (42%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    +  TPG  F M + + + +R +  LV +DEA  + + G  F+    +
Sbjct:   147 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV-LDEADEMLNKG--FK---EQ 200

Query:    71 LSSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             +  +  YLP    + L +   P        K   D +  L  ++ L L+        F  
Sbjct:   201 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI---KQFFVA 257

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             V  +          C +      T A+++C  +   D L+  +     + ++ H  +  K
Sbjct:   258 VEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 314

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R S++ ++ S   +V+++T  +  G+D   V L+ ++++P + E +    GR+GR    
Sbjct:   315 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 374

Query:   243 SKSLLYYGMDDRR 255
               ++ +   DD R
Sbjct:   375 GVAINFVKNDDIR 387


>UNIPROTKB|E2RDZ4 [details] [associations]
            symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
            "negative regulation of translation" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
            GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
            EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
            GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
        Length = 411

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 54/253 (21%), Positives = 108/253 (42%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    +  TPG  F M + + + +R +  LV +DEA  + + G  F+    +
Sbjct:   147 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV-LDEADEMLNKG--FK---EQ 200

Query:    71 LSSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             +  +  YLP    + L +   P        K   D +  L  ++ L L+        F  
Sbjct:   201 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI---KQFFVA 257

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             V  +          C +      T A+++C  +   D L+  +     + ++ H  +  K
Sbjct:   258 VEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 314

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R S++ ++ S   +V+++T  +  G+D   V L+ ++++P + E +    GR+GR    
Sbjct:   315 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 374

Query:   243 SKSLLYYGMDDRR 255
               ++ +   DD R
Sbjct:   375 GVAINFVKNDDIR 387


>UNIPROTKB|P38919 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
            of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
            evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
            regulation of translation" evidence=IDA] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
            "cytokine-mediated signaling pathway" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
            GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
            GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
            GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
            PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
            PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
            OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
            EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
            EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
            UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
            SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
            STRING:P38919 PhosphoSite:P38919 DMDM:20532400
            REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
            PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
            KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
            HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
            InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
            EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
            CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
            Uniprot:P38919
        Length = 411

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 54/253 (21%), Positives = 108/253 (42%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    +  TPG  F M + + + +R +  LV +DEA  + + G  F+    +
Sbjct:   147 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV-LDEADEMLNKG--FK---EQ 200

Query:    71 LSSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             +  +  YLP    + L +   P        K   D +  L  ++ L L+        F  
Sbjct:   201 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI---KQFFVA 257

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             V  +          C +      T A+++C  +   D L+  +     + ++ H  +  K
Sbjct:   258 VEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 314

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R S++ ++ S   +V+++T  +  G+D   V L+ ++++P + E +    GR+GR    
Sbjct:   315 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 374

Query:   243 SKSLLYYGMDDRR 255
               ++ +   DD R
Sbjct:   375 GVAINFVKNDDIR 387


>UNIPROTKB|A6M931 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
            UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
            GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
        Length = 411

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 54/253 (21%), Positives = 108/253 (42%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    +  TPG  F M + + + +R +  LV +DEA  + + G  F+    +
Sbjct:   147 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV-LDEADEMLNKG--FK---EQ 200

Query:    71 LSSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             +  +  YLP    + L +   P        K   D +  L  ++ L L+        F  
Sbjct:   201 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI---KQFFVA 257

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             V  +          C +      T A+++C  +   D L+  +     + ++ H  +  K
Sbjct:   258 VEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 314

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R S++ ++ S   +V+++T  +  G+D   V L+ ++++P + E +    GR+GR    
Sbjct:   315 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 374

Query:   243 SKSLLYYGMDDRR 255
               ++ +   DD R
Sbjct:   375 GVAINFVKNDDIR 387


>UNIPROTKB|F1RZ83 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
            translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0017148 "negative regulation of translation"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
            EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
            Uniprot:F1RZ83
        Length = 411

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 54/253 (21%), Positives = 108/253 (42%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    +  TPG  F M + + + +R +  LV +DEA  + + G  F+    +
Sbjct:   147 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV-LDEADEMLNKG--FK---EQ 200

Query:    71 LSSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             +  +  YLP    + L +   P        K   D +  L  ++ L L+        F  
Sbjct:   201 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI---KQFFVA 257

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             V  +          C +      T A+++C  +   D L+  +     + ++ H  +  K
Sbjct:   258 VEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 314

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R S++ ++ S   +V+++T  +  G+D   V L+ ++++P + E +    GR+GR    
Sbjct:   315 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 374

Query:   243 SKSLLYYGMDDRR 255
               ++ +   DD R
Sbjct:   375 GVAINFVKNDDIR 387


>RGD|1591139 [details] [associations]
            symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
            isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
            EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
            IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
            ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
            KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
        Length = 411

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 54/253 (21%), Positives = 108/253 (42%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    +  TPG  F M + + + +R +  LV +DEA  + + G  F+    +
Sbjct:   147 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV-LDEADEMLNKG--FK---EQ 200

Query:    71 LSSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             +  +  YLP    + L +   P        K   D +  L  ++ L L+        F  
Sbjct:   201 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI---KQFFVA 257

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             V  +          C +      T A+++C  +   D L+  +     + ++ H  +  K
Sbjct:   258 VEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 314

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R S++ ++ S   +V+++T  +  G+D   V L+ ++++P + E +    GR+GR    
Sbjct:   315 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 374

Query:   243 SKSLLYYGMDDRR 255
               ++ +   DD R
Sbjct:   375 GVAINFVKNDDIR 387


>UNIPROTKB|P54824 [details] [associations]
            symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
            "Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
            GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
            RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
            GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
        Length = 481

 Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 62/239 (25%), Positives = 106/239 (44%)

Query:    29 ATPG-FMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILA 85
             ATPG  +  +KK +     + ++ +DEA  + S   DF    + +  +   LP +  IL 
Sbjct:   220 ATPGRILDLIKKGVAKVDHIQMIVLDEADKLLS--QDFM---QIMEDIIMTLPKNRQILL 274

Query:    86 LTATAAPKVQKDVMESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLK 141
              +AT    VQK +  +L LQ P    L+ + +      +Y    +           S L+
Sbjct:   275 YSATFPLSVQKFM--TLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 332

Query:   142 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 201
              N    +I++C      + L+  +S  G SC   HA +  + R+ V  D+ +   + +V 
Sbjct:   333 INQ---SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 389

Query:   202 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260
             T  F  GID + V +V +F+ PK  E +    GR+GR      ++     DDR  ++ I
Sbjct:   390 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 448


>UNIPROTKB|Q81JK1 [details] [associations]
            symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 32/118 (27%), Positives = 57/118 (48%)

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
             N D+C I++C  +   D +   L      C   H G+  + R  V+DD+   + + +VAT
Sbjct:   241 NPDSC-IIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260
                  GID  ++  V +++IP   E++   +GR GR     K++ +    + R +E I
Sbjct:   300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357


>TIGR_CMR|BA_5703 [details] [associations]
            symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 32/118 (27%), Positives = 57/118 (48%)

Query:   143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202
             N D+C I++C  +   D +   L      C   H G+  + R  V+DD+   + + +VAT
Sbjct:   241 NPDSC-IIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299

Query:   203 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260
                  GID  ++  V +++IP   E++   +GR GR     K++ +    + R +E I
Sbjct:   300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357


>UNIPROTKB|Q5ZM36 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
            RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
            SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
            InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
        Length = 412

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 54/253 (21%), Positives = 108/253 (42%)

Query:    14 GKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
             G+   +L Y    +  TPG  F M + + + +R +  LV +DEA  + + G  F+    +
Sbjct:   148 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV-LDEADEMLNKG--FK---EQ 201

Query:    71 LSSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYE 122
             +  +  YLP    + L +   P        K   D +  L  ++ L L+        F  
Sbjct:   202 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI---KQFFVA 258

Query:   123 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
             V  +          C +      T A+++C  +   D L+  +     + ++ H  +  K
Sbjct:   259 VEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 315

Query:   183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
              R S++ ++ S   +V+++T  +  G+D   V L+ ++++P + E +    GR+GR    
Sbjct:   316 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 375

Query:   243 SKSLLYYGMDDRR 255
               ++ +   DD R
Sbjct:   376 GVAINFVKNDDIR 388


>RGD|1309586 [details] [associations]
            symbol:RGD1309586 "similar to probable ATP-dependent RNA
            helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
            OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
            RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
            GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
            NextBio:684798 Uniprot:D3ZN21
        Length = 659

 Score = 140 (54.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 374

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   375 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEEADKRSFLLD 431

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   432 LLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 491

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   492 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 532

 Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query:   359 GGQYSEFWNRDDEASGSEEDISDCDGN 385
             GG Y  F+N D           D  GN
Sbjct:   633 GGSYGGFYNSDGYGGNYSSQGVDWWGN 659


>MGI|MGI:91842 [details] [associations]
            symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
            GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
            GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
            KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
            IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
            ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
            PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
            Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
            InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
            Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
            GermOnline:ENSMUSG00000039224 Uniprot:P16381
        Length = 660

 Score = 140 (54.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 50/221 (22%), Positives = 95/221 (42%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 83
             L ATPG +  + +    GL     + +DEA  +   G  F P  R++   ++ +P   + 
Sbjct:   319 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGVR 375

Query:    84 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 138
               +  +AT   ++Q   +D ++        V +      N+  +V +             
Sbjct:   376 HTMMFSATFPKEIQMLARDFLDEYIFL--AVGRVGSTSENITQKVVW-VEEADKRSFLLD 432

Query:   139 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
             +L A G D+  +V+   +   D L  +L   G +C + H   + + R   L  + S +  
Sbjct:   433 LLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 492

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++VAT     G+D  +V+ V +F++P  +E +    GR GR
Sbjct:   493 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 533

 Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query:   359 GGQYSEFWNRDDEASGSEEDISDCDGN 385
             GG Y  F+N D           D  GN
Sbjct:   634 GGSYGGFYNSDGYGGNYSSQGVDWWGN 660


>CGD|CAL0004095 [details] [associations]
            symbol:TIF species:5476 "Candida albicans" [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
            EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 49/221 (22%), Positives = 100/221 (45%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG +  +  ++      + +  +DEA  + S G  F+    ++ ++   LP+   +
Sbjct:   145 VVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSG--FK---EQIYNIFRLLPETTQI 199

Query:    85 ALTATAAPKVQKDVME--SLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXC 137
              L +   P+   DV+E  +  + NP   LV K       +  FY +  +          C
Sbjct:   200 VLLSATMPQ---DVLEVTTKFMNNPVRILVKKDELTLEGIKQFY-INVELEDYKFDCL-C 254

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
              +  +   T A+++C  R+  + L+  L     + +A HA L    R +++ ++ S   +
Sbjct:   255 DLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSR 314

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++++T     GID + V LV ++++P + E +    GR GR
Sbjct:   315 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 355


>UNIPROTKB|P87206 [details] [associations]
            symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
            species:237561 "Candida albicans SC5314" [GO:0003743 "translation
            initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
            GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
            EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 49/221 (22%), Positives = 100/221 (45%)

Query:    27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             +  TPG +  +  ++      + +  +DEA  + S G  F+    ++ ++   LP+   +
Sbjct:   145 VVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSG--FK---EQIYNIFRLLPETTQI 199

Query:    85 ALTATAAPKVQKDVME--SLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXC 137
              L +   P+   DV+E  +  + NP   LV K       +  FY +  +          C
Sbjct:   200 VLLSATMPQ---DVLEVTTKFMNNPVRILVKKDELTLEGIKQFY-INVELEDYKFDCL-C 254

Query:   138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
              +  +   T A+++C  R+  + L+  L     + +A HA L    R +++ ++ S   +
Sbjct:   255 DLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSR 314

Query:   198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             ++++T     GID + V LV ++++P + E +    GR GR
Sbjct:   315 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 355


>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
            symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
            GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
            CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
            EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
            RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
            Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
            InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
        Length = 807

 Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 39/153 (25%), Positives = 70/153 (45%)

Query:    87 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG-D 145
             TAT  P V++ +  S   +  +V   S  +P+   E +               + A+G +
Sbjct:   593 TATMPPAVER-LARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLASGFE 651

Query:   146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205
                I++  ++  CD L+  L   G +    H G   + R   L +  +  K ++VAT   
Sbjct:   652 PPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVA 711

Query:   206 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             G GID +DV +V ++++ K++E +    GR GR
Sbjct:   712 GRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGR 744


>FB|FBgn0032690 [details] [associations]
            symbol:CG10333 species:7227 "Drosophila melanogaster"
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
            nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
            snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
            "precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
            GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
            OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
            UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
            GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
            InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
        Length = 822

 Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 45/169 (26%), Positives = 71/169 (42%)

Query:    87 TATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYE-VRYKXXXXXXXXXXCSVLKANG 144
             TAT  P V++  +    L+ P  V   S  +P    E + Y             +L    
Sbjct:   608 TATMPPAVER--LARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKRKKLMEILSRKI 665

Query:   145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204
             D   I++  ++   D L+  L   G +    H G   + R   L    S  K ++VAT  
Sbjct:   666 DPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDV 725

Query:   205 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
              G GID KDV LV ++++ K++E +    GR GR      ++ +   DD
Sbjct:   726 AGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDD 774


>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
            symbol:PFC0915w "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
            ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
            GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
            Uniprot:O97285
        Length = 433

 Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 61/231 (26%), Positives = 105/231 (45%)

Query:    18 LRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 75
             +RL  V   L  TPG +  L  K + +    +++ +DEA  + S   +F+P    +  L 
Sbjct:   173 MRLYNVVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLS--PEFQPI---VEELM 227

Query:    76 NYLP-DVPILALTATAAPKVQK-------DVMESLCLQNPLVLKSSFNRPNLFYEVRYKX 127
              +LP +  IL  +AT    V++       D  E + L + L LK    +   F + R K 
Sbjct:   228 KFLPKEKQILMYSATFPVTVKEFRAIYLSDAHE-INLMDELTLKG-ITQYYAFVKERQKV 285

Query:   128 XXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 187
                         L+ N    AI++C   T  + L+  ++  G S    HA ++   R+ V
Sbjct:   286 HCLNTLFAK---LQINQ---AIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRV 339

Query:   188 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
               D+ +   + +V++  F  GID + V +V +F+ PK+ E +    GR+GR
Sbjct:   340 FHDFRNGACRCLVSSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGR 390


>UNIPROTKB|Q5T1V6 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
            IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
            UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
            SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
            PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
            Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
            CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
            neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
            EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
            ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
            Genevestigator:Q5T1V6 Uniprot:Q5T1V6
        Length = 619

 Score = 133 (51.9 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 63/235 (26%), Positives = 100/235 (42%)

Query:    16 PSL-RLLYVTPELTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLS 72
             P L RL      + ATPG +  + K  S  L  + +V +DEA  +   G  F+     L 
Sbjct:   314 PQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMG--FQQQV--LD 369

Query:    73 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRP--N-----LFYEVR 124
              L N   D   + ++AT    +++  + S  L NP+ ++    N P  N     L+ E  
Sbjct:   370 ILENIPNDCQTILVSATIPTSIEQ--LASQLLHNPVRIITGEKNLPCANVRQIILWVEDP 427

Query:   125 YKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELS-AYLSAGGISCAAYHAGLNDKA 183
              K            + K        V C  +   D LS A     G+   + H+  +   
Sbjct:   428 AKKKKLFEILNDKKLFKP--PVLVFVDC--KLGADLLSEAVQKITGLKSISIHSEKSQIE 483

Query:   184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             R ++L   +    +VVV+T   G G+D   VRLV +F++P SM+ +  + GR GR
Sbjct:   484 RKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGR 538


>FB|FBgn0029979 [details] [associations]
            symbol:CG10777 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
            GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
            RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
            MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
            KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
            InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
            NextBio:774939 Uniprot:Q9W3M7
        Length = 945

 Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 54/242 (22%), Positives = 101/242 (41%)

Query:    27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
             + ATPG +    +  +  L     + +DEA  +   G  F P  RK+  +    PD  ++
Sbjct:   366 IIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMG--FEPQIRKI--IEQIRPDRQVV 421

Query:    85 ALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC---- 137
               +AT   +VQ    D +      N   +  S N  N+   V             C    
Sbjct:   422 MWSATWPKEVQALAGDFLNDYIQINIGSMNLSANH-NIRQIVEICTEIEKPQRLVCLLNE 480

Query:   138 -SVLKANGDTC--AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194
              S +K +G+     IV+   +   +++   + A G +  + H       R SVL D+ + 
Sbjct:   481 ISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNG 540

Query:   195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254
             +  +++AT     G+D +D++ V +++ P S E +    GR GR Q    +  ++  D+ 
Sbjct:   541 KSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNA 600

Query:   255 RR 256
             ++
Sbjct:   601 KQ 602


>UNIPROTKB|A4QSS5 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase DBP2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
            ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
            KEGG:mgr:MGG_16901 Uniprot:A4QSS5
        Length = 548

 Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 62/267 (23%), Positives = 112/267 (41%)

Query:     5 TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNLVAIDEAHCISSW 60
             T +Y  +  G P +R L    E+  ATPG  +  L+  K + R +  LV +DEA  +   
Sbjct:   230 TCVYGGVPKG-PQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLV-LDEADRMLDM 287

Query:    61 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFN-R 116
             G  F P  RK+  +    PD   L  +AT   +V+    D ++     N   L  S N R
Sbjct:   288 G--FEPQIRKI--IGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHR 343

Query:   117 PNLFYEVRYKXXXXXXXXXXCSVLKANGDTC--AIVYCLERTTCDELSAYLSAGGISCAA 174
                  EV  +             +    D+    +++   +   DE++ +L   G    +
Sbjct:   344 ITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALS 403

Query:   175 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 234
              H       R  VLD + + +  ++VAT     GID +++  V +++ P + E +    G
Sbjct:   404 IHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIG 463

Query:   235 RAGRDQLPSKSLLYYGMDDRRRMEFIL 261
             R GR      ++ ++  ++ ++   +L
Sbjct:   464 RTGRAGAKGTAITFFTTENSKQARDLL 490


>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
            symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
            RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
            Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
            NextBio:20787456 Uniprot:E7F1G8
        Length = 483

 Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 56/226 (24%), Positives = 99/226 (43%)

Query:    18 LRLLYVTPELTATPG-FMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 75
             +RL  +   + ATPG  +  +KK +     + +  +DEA  + S   DF      +  + 
Sbjct:   202 MRLDEIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLLS--QDF---VVLIEDII 256

Query:    76 NYLPDV-PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL--FYEVRYKXXXXXX 132
             ++LP    IL  +AT    VQK + + L     + L        +  +Y    +      
Sbjct:   257 SFLPKKRQILLYSATFPISVQKFMTKHLQKPYEINLMDELTLKGITQYYAYVTERQKVHC 316

Query:   133 XXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 192
                  S L+ N    +I++C      + L+  ++  G SC   HA +  + R+ V  D+ 
Sbjct:   317 LNTLFSRLQINQ---SIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFR 373

Query:   193 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
             +   + +V T  F  GID + V +V +F+ PK+ E +    GR+GR
Sbjct:   374 NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR 419


>UNIPROTKB|E1BXX5 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
            RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
            Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
            NextBio:20826688 Uniprot:E1BXX5
        Length = 625

 Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 23/70 (32%), Positives = 44/70 (62%)

Query:   169 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 228
             G+ C + H+  +   R+++L   +  + +V+V+T   G G+D  +V+LV +F++P SM+ 
Sbjct:   475 GLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVNFDMPSSMDE 534

Query:   229 FYQESGRAGR 238
             +  + GRAGR
Sbjct:   535 YVHQVGRAGR 544

WARNING:  HSPs involving 166 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      394       374   0.00087  117 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  416
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  254 KB (2136 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.89u 0.09s 27.98t   Elapsed:  00:00:03
  Total cpu time:  27.95u 0.09s 28.04t   Elapsed:  00:00:03
  Start:  Fri May 10 11:05:18 2013   End:  Fri May 10 11:05:21 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with RecQl3 RecQl3 RecQl3 AT4G35740	protein from Arabidopsis thaliana	2.9e-142
BLAST match view associations BLAST with F1NWK5 F1NWK5 F1NWK5 Uncharacterized protein	protein from Gallus gallus	5.9e-70
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 RecQ protein-like 5	protein from Homo sapiens	2.4e-69
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	2.7e-69
BLAST match view associations BLAST with F1NT69 F1NT69 F1NT69 Uncharacterized protein	protein from Gallus gallus	4.9e-69
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Bos taurus	9.6e-69
BLAST match view associations BLAST with Recql5 Recql5 Recql5 RecQ protein-like 5	gene from Rattus norvegicus	1.3e-68
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Canis lupus familiaris	4.0e-68
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	1.5e-67
BLAST match view associations BLAST with him-6 him-6 him-6	gene from Caenorhabditis elegans	5.0e-65
BLAST match view associations BLAST with blm blm blm Bloom syndrome protein	gene from Dictyostelium discoideum	2.7e-64
BLAST match view associations BLAST with blm blm blm Bloom syndrome	gene_product from Danio rerio	1.9e-63
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Sus scrofa	2.4e-60
BLAST match view associations BLAST with RECQL2 RECQL2 RECQL2 RECQ helicase L2	protein from Arabidopsis thaliana	1.3e-59
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome helicase ortholog	protein from Drosophila melanogaster	1.4e-59
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Bos taurus	1.6e-59
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein	protein from Homo sapiens	3.2e-59
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein	protein from Homo sapiens	4.2e-59
BLAST match view associations BLAST with SGS1 SGS1 SGS1 Nucleolar DNA helicase of the RecQ family	gene from Saccharomyces cerevisiae	4.4e-59
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Canis lupus familiaris	8.6e-59
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Canis lupus familiaris	8.8e-59
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome, RecQ helicase-like	protein from Mus musculus	1.1e-58
BLAST match view associations BLAST with RECQ4A RECQ4A RECQ4A	protein from Arabidopsis thaliana	1.4e-58
BLAST match view associations BLAST with RecQ5 RecQ5 RecQ5 homolog of RecQ	protein from Drosophila melanogaster	5.2e-58
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	3.1e-57
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	5.4e-57
BLAST match view associations BLAST with blm blm blm Bloom syndrome protein homolog	protein from Xenopus laevis	6.7e-57
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	1.8e-56
BLAST match view associations BLAST with SGS1 SGS1 SGS1	gene_product from Candida albicans	8.9e-56
BLAST match view associations BLAST with SGS1 SGS1 SGS1 Putative uncharacterized protein SGS1	protein from Candida albicans SC5314	8.9e-56
BLAST match view associations BLAST with Recql Recql Recql RecQ protein-like (DNA helicase Q1-like)	gene from Rattus norvegicus	1.8e-55
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Gallus gallus	2.3e-55
BLAST match view associations BLAST with K02F3.12 K02F3.12 K02F3.12	gene from Caenorhabditis elegans	2.9e-55
BLAST match view associations BLAST with recql recql recql RecQ protein-like (DNA helicase Q1-like)	gene_product from Danio rerio	7.8e-55
BLAST match view associations BLAST with RECQI1 RECQI1 RECQI1 RECQ helicase l1	protein from Arabidopsis thaliana	9.9e-55
BLAST match view associations BLAST with DDB_G0272384 DDB_G0272384 DDB_G0272384 Bloom syndrome-like protein	gene from Dictyostelium discoideum	2.1e-54
BLAST match view associations BLAST with Recql Recql Recql RecQ protein-like	protein from Mus musculus	2.6e-54
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome, RecQ helicase-like	gene from Rattus norvegicus	1.9e-53
BLAST match view associations BLAST with RECQL RECQL RECQL RecQ protein-like (DNA helicase Q1-like)	protein from Bos taurus	8.0e-53
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Sus scrofa	8.0e-53
BLAST match view associations BLAST with CBU_0472 CBU_0472 CBU_0472 ATP-dependent DNA helicase RecQ	protein from Coxiella burnetii RSA 493	1.0e-52
BLAST match view associations BLAST with RECQL RECQL RECQL ATP-dependent DNA helicase Q1	protein from Homo sapiens	2.1e-52
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Canis lupus familiaris	4.4e-52
BLAST match view associations BLAST with GSU_0898 GSU_0898 GSU_0898 ATP-dependent DNA helicase RecQ	protein from Geobacter sulfurreducens PCA	7.2e-52
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome ATP-dependent helicase homolog	protein from Xenopus laevis	1.0e-51
BLAST match view associations BLAST with SO_4241 SO_4241 SO_4241 ATP-dependent DNA helicase RecQ	protein from Shewanella oneidensis MR-1	1.9e-51
BLAST match view associations BLAST with recQ recQ recQ	gene from Escherichia coli K-12	1.7e-50
BLAST match view associations BLAST with VC_0196 VC_0196 VC_0196 ATP-dependent DNA helicase RecQ	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.5e-49
BLAST match view associations BLAST with VC_0196 VC_0196 VC_0196 ATP-dependent DNA helicase RecQ	protein from Vibrio cholerae O1 biovar El Tor	2.5e-49
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	2.9e-48
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome protein	gene from Dictyostelium discoideum	2.9e-48
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	3.2e-48
BLAST match view associations BLAST with recQ recQ recQ Probable ATP-dependent DNA helicase RecQ	protein from Bacillus subtilis subsp. subtilis str. 168	4.7e-48
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	4.8e-48
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome	gene_product from Danio rerio	5.6e-48
BLAST match view associations BLAST with PF14_0278 PF14_0278 PF14_0278 ATP-dependent DNA helicase, putative	gene from Plasmodium falciparum	6.3e-48
BLAST match view associations BLAST with PF14_0278 PF14_0278 PF14_0278 ATP-dependent DNA helicase, putative	protein from Plasmodium falciparum 3D7	6.3e-48
BLAST match view associations BLAST with rcq-5 rcq-5 rcq-5	gene from Caenorhabditis elegans	1.4e-47
BLAST match view associations BLAST with F1NAR0 F1NAR0 F1NAR0 Uncharacterized protein	protein from Gallus gallus	1.6e-46
BLAST match view associations BLAST with BA_2818 BA_2818 BA_2818 ATP-dependent DNA helicase RecQ	protein from Bacillus anthracis str. Ames	1.8e-46
BLAST match view associations BLAST with WRN WRN WRN Werner syndrome ATP-dependent helicase	protein from Homo sapiens	2.2e-46
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Bos taurus	3.2e-45
BLAST match view associations BLAST with Wrn Wrn Wrn Werner syndrome homolog (human)	protein from Mus musculus	4.1e-45
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Sus scrofa	1.0e-43
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Sus scrofa	1.1e-43
BLAST match view associations BLAST with wrn-1 wrn-1 wrn-1	gene from Caenorhabditis elegans	3.6e-42
BLAST match view associations BLAST with SPO_0107 SPO_0107 SPO_0107 ATP-dependent DNA helicase RecQ	protein from Ruegeria pomeroyi DSS-3	2.0e-41
BLAST match view associations BLAST with BA_1505 BA_1505 BA_1505 ATP-dependent DNA helicase RecQ	protein from Bacillus anthracis str. Ames	3.2e-41
BLAST match view associations BLAST with Wrn Wrn Wrn Werner syndrome, RecQ helicase-like	gene from Rattus norvegicus	6.2e-41
BLAST match view associations BLAST with RECQSIM RECQSIM RECQSIM RECQ helicase SIM	protein from Arabidopsis thaliana	7.6e-39
BLAST match view associations BLAST with CPS_4237 CPS_4237 CPS_4237 RecQ domain protein	protein from Colwellia psychrerythraea 34H	2.2e-35
BLAST match view associations BLAST with CPS_4237 CPS_4237 CPS_4237 RecQ domain protein	protein from Colwellia psychrerythraea 34H	2.2e-35
BLAST match view associations BLAST with SO_2380 SO_2380 SO_2380 ATP-dependent DNA helicase RecQ family	protein from Shewanella oneidensis MR-1	1.2e-32
BLAST match view associations BLAST with SO_2380 SO_2380 SO_2380 RecQ domain protein	protein from Shewanella oneidensis MR-1	1.2e-32
BLAST match view associations BLAST with AT1G27880 AT1G27880 AT1G27880	protein from Arabidopsis thaliana	6.6e-32
BLAST match view associations BLAST with H9KZS5 H9KZS5 H9KZS5 Uncharacterized protein	protein from Gallus gallus	2.2e-28
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	6.4e-28
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Sus scrofa	2.2e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 ATP-dependent DNA helicase Q4	protein from Homo sapiens	5.0e-23
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	8.1e-23
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	8.2e-23
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	8.4e-23
BLAST match view associations BLAST with RTS RTS RTS RECQL4-helicase-like protein	protein from Xenopus laevis	1.1e-22
BLAST match view associations BLAST with recql4 recql4 recql4 RecQ4 protein	protein from Xenopus laevis	1.1e-22
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Sus scrofa	1.3e-22
BLAST match view associations BLAST with Recql4 Recql4 Recql4 RecQ protein-like 4	protein from Mus musculus	6.6e-22
BLAST match view associations BLAST with Recql4 Recql4 Recql4 RecQ protein-like 4	gene from Rattus norvegicus	6.6e-22
BLAST match view associations BLAST with RecQ4 RecQ4 RecQ4	protein from Drosophila melanogaster	2.9e-21
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 RECQL4 protein	protein from Bos taurus	3.7e-21
BLAST match view associations BLAST with CPS_2945 CPS_2945 CPS_2945 Putative DEAD/DEAH box helicase	protein from Colwellia psychrerythraea 34H	2.2e-18
BLAST match view associations BLAST with CPS_2945 CPS_2945 CPS_2945 putative DEAD/DEAH box helicase	protein from Colwellia psychrerythraea 34H	2.2e-18
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	8.8e-15
BLAST match view associations BLAST with eIF-4a eIF-4a eIF-4a Eukaryotic initiation factor 4a	protein from Drosophila melanogaster	2.4e-10