BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016133
(394 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/383 (71%), Positives = 331/383 (86%), Gaps = 8/383 (2%)
Query: 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
VK KI+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDEAHCISSWG
Sbjct: 113 HVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWG 172
Query: 62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 121
HDFRPSYR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL L+NPLVLKSSFNRPN+FY
Sbjct: 173 HDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFY 232
Query: 122 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
EVRYKDLLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN
Sbjct: 233 EVRYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNS 292
Query: 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
K RS+VLDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQL
Sbjct: 293 KMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQL 352
Query: 242 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 301
PS+S+LYYG+DDR++ME++L +NS++ + SSKK SDF Q+V YCEGSGCRRK
Sbjct: 353 PSRSVLYYGVDDRKKMEYLL-----RNSENKKS--SSSKKPTSDFEQIVTYCEGSGCRRK 405
Query: 302 KILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI-SSQDMTDGG 360
KILESFGE+ PV CK +CDACKHPN +A L EL + ++++ S+IFI SS + T+ G
Sbjct: 406 KILESFGEEFPVQQCKKTCDACKHPNQVAHCLEELMTTASRRHNSSRIFITSSNNKTNEG 465
Query: 361 QYSEFWNRDDEASGSEEDISDCD 383
QYSEFWNR+++ S S E+ISD D
Sbjct: 466 QYSEFWNRNEDGSNSNEEISDSD 488
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/344 (42%), Positives = 212/344 (61%), Gaps = 12/344 (3%)
Query: 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
Q + ++ DL+ KP ++LY+TPE+ A+ F L + SR LL+ + +DEAHC+S WG
Sbjct: 107 QERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWG 166
Query: 62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLF 120
HDFRP Y +L +LR+ L P +ALTATA P+VQ+DV +L L+ P+ + K+ R NLF
Sbjct: 167 HDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLF 226
Query: 121 YEVRYKDLLDDAYADLCSV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISC 172
Y+V++K+L+ D Y +L LKA G C IVYC R C++L+ LS G++
Sbjct: 227 YDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNA 286
Query: 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 232
AYHAGL R+ V +DW+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQE
Sbjct: 287 KAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQE 346
Query: 233 SGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDY 292
SGRAGRD PS LYY +DR ++ F++ K +K + + S K +I F +V +
Sbjct: 347 SGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTF 405
Query: 293 CEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGEL 336
CE GCR I + FG+ +P C CD C++P + + L L
Sbjct: 406 CEELGCRHAAIAKYFGDALPA--CAKGCDHCQNPTAVRRRLEAL 447
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 268 bits (685), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 150/332 (45%), Positives = 200/332 (60%), Gaps = 24/332 (7%)
Query: 4 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 62
+ KIY +L SG PS++LLYVTPE ++A+ S +H RGLL IDEAHC+S WGH
Sbjct: 326 QEKIYAELGSGNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGH 385
Query: 63 DFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF 120
DFRP Y KLSSLR P VPI+ALTATA PK+ D + L +QN + SSF R NL
Sbjct: 386 DFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLK 445
Query: 121 YEVRYKDLLDDAYADLCSVLKANGD----TCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
Y DL+ A L +V++ IVYCL R C+ + L+ G+S YH
Sbjct: 446 Y-----DLIPKAARSLINVVEKMKQLYPGKSGIVYCLSRKECETVQMMLTKAGLSAEVYH 500
Query: 177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
AGLND R SV WI+++ V+ AT+AFGMGID+ DVR V H+++PKS+E +YQE+GRA
Sbjct: 501 AGLNDNLRVSVQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRA 560
Query: 237 GRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG- 295
GRD +PS L+ Y D R+ ++ + + +T RS +++ Q+V YCE
Sbjct: 561 GRDGMPSYCLMLYSYHDSIRLRRMIEEGNT------TTGVRSMH--LNNVLQVVAYCENV 612
Query: 296 SGCRRKKILESFGEQIPVSLCKNS---CDACK 324
S CRRK ++E FGE C+NS CD C+
Sbjct: 613 SVCRRKMLVEHFGEVYDEQSCRNSKTPCDICE 644
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 255 bits (652), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 194/312 (62%), Gaps = 19/312 (6%)
Query: 18 LRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
++LLYVTPE A+ G +++ LK ++ R LL + IDEAHC+S WGHDFRP Y++L LR+
Sbjct: 616 VKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRD 675
Query: 77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADL 136
+P +ALTATA V+KD++ +L ++N L LKSSFNRPNLFYE++ K D Y +L
Sbjct: 676 RYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK---KDLYTEL 732
Query: 137 CSVLKANG--DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWIS 193
+ +NG I+YCL RT+C++++A L G+ YHAGL R + ++W S
Sbjct: 733 YRFI-SNGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQS 791
Query: 194 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253
+++VAT+AFGMG+D+ DVR V H + PKS+E +YQE+GRAGRD P+ +++Y D
Sbjct: 792 GSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKD 851
Query: 254 RRRME-FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQI 311
+ I+S + T+ER + Q++ +CE + CRRK++L FGE
Sbjct: 852 HVTFQKLIMSGDGDA-----ETKERQRQM----LRQVIQFCENKTDCRRKQVLAYFGENF 902
Query: 312 PVSLCKNSCDAC 323
C+ CD C
Sbjct: 903 DKVHCRKGCDIC 914
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 194/311 (62%), Gaps = 12/311 (3%)
Query: 18 LRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
L L+Y++PE+ +A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L +
Sbjct: 773 LDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKR 832
Query: 77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADL 136
PD+P++ALTATA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++
Sbjct: 833 EYPDIPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEI 890
Query: 137 CSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 195
C +K+ + I+YC + +C++ SA + GI CA YHAG+ R SV W +
Sbjct: 891 CDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADE 950
Query: 196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255
QV+ ATVAFGMGID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R
Sbjct: 951 IQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIR 1010
Query: 256 RMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVS 314
M+ ++ K+++ + + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1011 TMQTMIQKDKNLDRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEDFDSK 1063
Query: 315 LCKNSCDACKH 325
LC +CD C++
Sbjct: 1064 LCHKNCDNCRN 1074
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 190/323 (58%), Gaps = 24/323 (7%)
Query: 7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
+Y+ L+ G+ L++LYVTPE ++ + FMSKL+K H+ G L+L++IDEAHC S WGHDFR
Sbjct: 171 VYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFR 230
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
P Y+ LS L+ P VP++ALTATA KVQ D++E L + + SS NRPNLFY VR
Sbjct: 231 PDYKNLSILKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVRE 290
Query: 126 KD----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
K L+ D A+ +N ++ IVYC R C++++ L GIS YHA ++
Sbjct: 291 KSAVGKLVVDEIAEFIRESYSNNES-GIVYCFSRKECEQIAGDLRERGISADYYHADMDA 349
Query: 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
R V W ++ QV+V TVAFGMGI++ DVR V H ++ KSME +YQESGRAGRD L
Sbjct: 350 NMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGL 409
Query: 242 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRR 300
PS+ +L++ D R S E S +++ D +V YC+ + CRR
Sbjct: 410 PSECILFFRSADVPR------------QSSMVFYEYSGLQNLYD---IVRYCQSKTKCRR 454
Query: 301 KKILESFGEQIPVSLCKNSCDAC 323
FGE P C CD C
Sbjct: 455 SAFFRHFGE--PSQDCNGMCDNC 475
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 188/327 (57%), Gaps = 15/327 (4%)
Query: 5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
T IY L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGHD
Sbjct: 747 TNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHD 806
Query: 64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
FR Y++++ LR P VP++ALTATA P+VQKD++ L + P V SFNR NL Y V
Sbjct: 807 FRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYV 866
Query: 124 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
K A+ L + K + I+YCL R CD ++ L G++ AYHAGL+D A
Sbjct: 867 LPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSA 926
Query: 184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
R V WI+ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 927 RDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEI 986
Query: 243 SKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
S LL+Y D R++ ++ + N + T ++ MV YCE + CRR
Sbjct: 987 SHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETH-------FNNLYSMVHYCENITECRRI 1039
Query: 302 KILESFGEQ-IPVSLCKN----SCDAC 323
++L FGE CK SCD C
Sbjct: 1040 QLLAYFGENGFNPDFCKKHPDVSCDNC 1066
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 251 bits (641), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 191/325 (58%), Gaps = 15/325 (4%)
Query: 7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
IY L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFR
Sbjct: 757 IYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFR 816
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
Y++++ LR P VP++ALTATA P+VQKD++ L + P V SFNR NL Y V
Sbjct: 817 QDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLP 876
Query: 126 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
K A+ L + K + I+YCL R CD ++ L G++ AYHAGL+D AR
Sbjct: 877 KKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARD 936
Query: 186 SVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
V WI+ QV+ AT+AFGMGID+ DVR V H ++PKSME +YQESGRAGRD S
Sbjct: 937 EVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISH 996
Query: 245 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKI 303
+L+Y D R++ ++ + N + T+E +++ MV YCE + CRR ++
Sbjct: 997 CVLFYTYHDVTRLKRLIMMEKDGN---YHTKE----THVNNLYSMVHYCENITECRRIQL 1049
Query: 304 LESFGEQ-IPVSLCKN----SCDAC 323
L FGE+ CK SCD C
Sbjct: 1050 LAYFGEKGFNPDFCKKYPDVSCDNC 1074
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 191/324 (58%), Gaps = 15/324 (4%)
Query: 7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
IY DL+S P ++LLYVTPE ++++ F L ++S ++ IDEAHC+S WGHDFR
Sbjct: 819 IYRDLESQPPMVKLLYVTPEKISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFR 878
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
P Y+KL L+ P+VP +ALTATA P+V+ D++ L L+N SSFNR NL Y V
Sbjct: 879 PDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLP 938
Query: 126 KDLLDDAYADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 184
K + D+ +++ I+YCL R CDE S + G+ +YHAGL D R
Sbjct: 939 KKGVS-TLDDISRYIRSKPQHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDR 997
Query: 185 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
S DW++ + +V+ ATVAFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD +
Sbjct: 998 ESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVAD 1057
Query: 245 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKI 303
+LYY D R++ +L ++ + + K + + ++V YCE + CRR +
Sbjct: 1058 CILYYNYSDMLRIKKMLDSDK-------ALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQ 1110
Query: 304 LESFGEQIPVSLC----KNSCDAC 323
L+ FGE C + +CD C
Sbjct: 1111 LDYFGEHFTSEQCLENRETACDNC 1134
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 193/327 (59%), Gaps = 11/327 (3%)
Query: 6 KIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 64
KI+++L+S +LLYVTPE A + + L+ ++SRGLL IDEAHC+S WGHDF
Sbjct: 534 KIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 593
Query: 65 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 124
RP Y+ L L+ P++P+LALTATA V++DV+++L L N +V + SFNRPNL+Y V
Sbjct: 594 RPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVV 653
Query: 125 YKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
K D+ +K N D C I+YCL R C+++S L G A YH + +
Sbjct: 654 PK--TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQ 711
Query: 184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
R+ + W ++ ATVAFGMGI++ DVR V H ++PKS+E ++QE GRAGRD S
Sbjct: 712 RAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 771
Query: 244 KSLLYYGMDDRRRMEFILSK---NQSKNSQSFSTRERSSK---KSISDFSQMVDYCEGS- 296
+LYYG D R++ ++S+ +QS + ++ S + + + +MV YCE
Sbjct: 772 SCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVASSGRLLETNTENLLRMVRYCENEV 831
Query: 297 GCRRKKILESFGEQIPVSLCKNSCDAC 323
CRR L GE+ + CK +CD C
Sbjct: 832 ECRRFLQLVHLGEKFDSTNCKKTCDNC 858
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 186/325 (57%), Gaps = 15/325 (4%)
Query: 7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
IY L P ++LLYVTPE + A+ +S ++ ++ R LL IDEAHC+S WGHDFR
Sbjct: 701 IYLQLSKKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFR 760
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
P Y++L+ LR VP++ALTATA P+V+KD++ L + P + SFNR NL YEV
Sbjct: 761 PDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLP 820
Query: 126 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
K A + + K + + I+YCL R CD ++ L G++ AYHAGL D R
Sbjct: 821 KKPKRVALDCVEWIKKHHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRD 880
Query: 186 SVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244
V WI+ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S
Sbjct: 881 YVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSH 940
Query: 245 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKI 303
LL+Y D R+ ++ + NS + T ++ MV YCE CRR ++
Sbjct: 941 CLLFYSYHDVTRIRRLIQMEKDGNSHTKQTH-------FNNLYSMVHYCENVVECRRMQL 993
Query: 304 LESFGE-QIPVSLCKN----SCDAC 323
L FGE + CK +CD C
Sbjct: 994 LSYFGENNFNPNFCKEHTQVACDNC 1018
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 193/333 (57%), Gaps = 11/333 (3%)
Query: 6 KIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 64
+I ++L S K +LLYVTPE A + + L+ ++SR LL IDEAHC+S WGHDF
Sbjct: 550 EILQELSSEKSKYKLLYVTPEKVAKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDF 609
Query: 65 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 124
RP Y+ L L+ P++P+LALTATA V++DV+++L L N +V + SFNRPNL+Y V
Sbjct: 610 RPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVV 669
Query: 125 YKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
K + D+ ++ N D C I+YCL R C++++ L G A YH ++
Sbjct: 670 PKT--NKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGK 727
Query: 184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
R+ V W ++ ATVAFGMGI++ DVR V H ++PKS+E ++QE GRAGRD S
Sbjct: 728 RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 787
Query: 244 KSLLYYGMDDRRRMEFILSK---NQSKNSQSFSTRERSSK---KSISDFSQMVDYCEGS- 296
+LYY D R++ ++S+ Q + ++ + S + + + +MV YCE
Sbjct: 788 SCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCKASSGRMLETNTENLLRMVSYCENEV 847
Query: 297 GCRRKKILESFGEQIPVSLCKNSCDACKHPNLL 329
CRR L GE+ + CKN+CD C +L
Sbjct: 848 DCRRFLQLVHLGEKFDSTNCKNTCDNCSSSKIL 880
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 183/327 (55%), Gaps = 15/327 (4%)
Query: 5 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGHD
Sbjct: 477 SKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHD 536
Query: 64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
FR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+V
Sbjct: 537 FRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDV 596
Query: 124 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 597 LPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSN 656
Query: 184 RSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +Y ESGRAGRD
Sbjct: 657 RDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEM 716
Query: 243 SKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 301
S LL+Y D R+ ++ + NS + T ++ MV YCE CRR
Sbjct: 717 SHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH-------FNNLYSMVHYCENVVDCRRI 769
Query: 302 KILESFGEQ-IPVSLCKNS----CDAC 323
++L FGE + CK+ CD C
Sbjct: 770 QLLAYFGETDFNPNFCKDHPEVICDNC 796
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 238 bits (606), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 179/323 (55%), Gaps = 19/323 (5%)
Query: 6 KIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 64
++ + + G LRLLYVTPE L + M++L+K G L L+AIDE HC S WGHDF
Sbjct: 167 RVEQAITKGSTELRLLYVTPEKLAKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQWGHDF 226
Query: 65 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 124
R Y L+ L+ VPIL LTATA V DV + L + +V ++ FNR NL Y+V
Sbjct: 227 RTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKKMLGIPVAIVFRAGFNRANLNYKVL 286
Query: 125 YKDLLDDAYAD--LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182
K +D + + ++ + I+YCL R C++L+ L A GI YHA +
Sbjct: 287 TKPGSEDECVEKIVRTIKRKFSGKTGIIYCLSRNDCEKLAKSLKANGIRAKHYHAYMEPV 346
Query: 183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242
RS+ W+S QV+VATVAFGMGID+ DVR V H ++PKS+E +YQESGRAGRD LP
Sbjct: 347 DRSAAHQKWVSGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAGRDGLP 406
Query: 243 SKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRK 301
+ +LYY M D + ++ + Q+ I++ MV Y + CRR
Sbjct: 407 ATCILYYRMSDIFKQSSMIQQEQT---------------GIANLYNMVRYASDTVTCRRV 451
Query: 302 KILESFGEQIPVSLCKNSCDACK 324
K+ E F E S C+ CD C+
Sbjct: 452 KLAEHFEEAWEPSWCQKQCDVCE 474
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 184/329 (55%), Gaps = 20/329 (6%)
Query: 4 KTKIYEDLDSGKPS-LRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61
+ K ED + K S RLLYVTPE L + M+KL+K S G L L+AIDE HC S WG
Sbjct: 187 EAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWG 246
Query: 62 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 121
HDFR Y L+ L+ VPIL LTATA V DV + L +Q L ++ FNR NL Y
Sbjct: 247 HDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKY 306
Query: 122 EVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179
+V K D+ ++ +K + I+YCL R C++++ L + GI YHA +
Sbjct: 307 KVVQKPGSEDECTEEIAKTIKRDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYM 366
Query: 180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239
RS WIS + QV+VATVAFGMGID+ +VR V H ++PKS+E +YQESGRAGRD
Sbjct: 367 EPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRD 426
Query: 240 QLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDY-CEGSGC 298
P+ +LYY + D I ++ S +ER+ I + MV Y + S C
Sbjct: 427 GQPATCILYYRLAD------IFKQS------SMVQQERT---GIQNLYNMVRYAADSSTC 471
Query: 299 RRKKILESFGEQIPVSLCKNSCDACKHPN 327
RR K+ E F E S C+ CD C++ N
Sbjct: 472 RRVKLAEHFEEAWEPSWCQKQCDTCENGN 500
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 188/326 (57%), Gaps = 16/326 (4%)
Query: 7 IYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
+ ++L PS +LLYVTPE + + F+ L+ + +GLL +DEAHC+S WGHDFR
Sbjct: 289 VLQELRRDNPSCKLLYVTPEKIAGSSSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFR 348
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
P YR+L L+ P VP++ALTATA V +DV++SL + VLK SF+R NL YEV
Sbjct: 349 PDYRELGCLKQNFPRVPVMALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIV 408
Query: 126 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKA 183
K + L +L+ D IVYCL ++ C +++ +L+ + YHAG+ K
Sbjct: 409 K--TKEPLKQLQELLRDRFKDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQ 466
Query: 184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
R V W + ++V AT+AFGMGID+ DVR V H + K++E++YQESGRAGRD L +
Sbjct: 467 RVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQA 526
Query: 244 KSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKK 302
+ + Y D R+ +L Q +N F K +++ +M YCE + CRR+
Sbjct: 527 QCICLYQKKDFSRVVCMLRNGQGRNMDRF-------KSAMAQAKKMQQYCELKTECRRQM 579
Query: 303 ILESFGEQIPVSLCK---NSCDACKH 325
+LE FGE +CK N CD C+
Sbjct: 580 LLEYFGESFDRMICKSSLNPCDNCER 605
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 178/321 (55%), Gaps = 19/321 (5%)
Query: 7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
++ ++ + L+L+YVTPE A + FMS+L+K + G L VA+DE HC S WGHDFR
Sbjct: 173 VHTEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFR 232
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
P Y+ L L+ P++ ++ LTATA V KD + LC++ L +SFNRPNL+YEVR
Sbjct: 233 PDYKALGILKRQFPNISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQ 292
Query: 126 K-DLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
K +D ++ +++ I+YC + ++++ L G+ YHA + +
Sbjct: 293 KPSSAEDFIENIANLINGRYKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPED 352
Query: 184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243
R+ V W ++ QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD +
Sbjct: 353 RTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRA 412
Query: 244 KSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKK 302
+LYYG D R+ S E ++ + + MV YC+ S CRR
Sbjct: 413 DCILYYGFGDIFRIS------------SMVVMENVGQQKLYE---MVSYCQNISKCRRAL 457
Query: 303 ILESFGEQIPVSLCKNSCDAC 323
I + F E C CD C
Sbjct: 458 IAQHFDEVWNADACNKMCDNC 478
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 177/323 (54%), Gaps = 23/323 (7%)
Query: 7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
++ ++ + L+L+YVTPE A + FMS+L+K + G L A+DE HC S WGHDFR
Sbjct: 173 VHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFR 232
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
P Y+ L L+ P+ ++ LTATA V KDV + LC+ L +SFNRPNLFYEVR
Sbjct: 233 PDYKALGILKRQFPNASLMGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQ 292
Query: 126 K-DLLDDAYADLCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
K +D D+ ++ NG I+YC + ++++ L GI YHA +
Sbjct: 293 KPSSAEDFTEDIVKLI--NGRYKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEP 350
Query: 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
+ ++ V W ++ QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD
Sbjct: 351 EDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDS 410
Query: 242 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRR 300
+ +LYYG D R+ S E ++ + + MV YC+ S CRR
Sbjct: 411 RADCILYYGFGDIFRIS------------SMVVMENVGQQKLYE---MVSYCQNVSKCRR 455
Query: 301 KKILESFGEQIPVSLCKNSCDAC 323
I + F E C CD C
Sbjct: 456 VLIAQHFDEVWNADACNKMCDNC 478
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 175/324 (54%), Gaps = 25/324 (7%)
Query: 7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
++ ++ + L+L+YVTPE A + FMS+L+K + +A+DE HC S WGHDFR
Sbjct: 173 VHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFR 232
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
P Y+ L L+ P+ ++ LTATA V D + LC++ +SFNRPNL+YEVR
Sbjct: 233 PDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQ 292
Query: 126 K-----DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180
K D ++D + K I+YC + ++++ L GI AYHA L
Sbjct: 293 KPSNTEDFIEDIVKLINGRYKGQS---GIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLE 349
Query: 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240
+ +++V W ++ QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD
Sbjct: 350 PEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD 409
Query: 241 LPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCR 299
+ + +LYYG D R+ S E ++ + + MV YC+ S CR
Sbjct: 410 MKADCILYYGFGDIFRI------------SSMVVMENVGQQKLYE---MVSYCQNISKCR 454
Query: 300 RKKILESFGEQIPVSLCKNSCDAC 323
R + + F E C CD C
Sbjct: 455 RVLMAQHFDEVWNSEACNKMCDNC 478
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 175/324 (54%), Gaps = 25/324 (7%)
Query: 7 IYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65
++ ++ + L+L+YVTPE A + FMS+L+K + +A+DE HC S WGHDFR
Sbjct: 173 VHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFR 232
Query: 66 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 125
P Y+ L L+ P+ ++ LTATA V D + LC++ +SFNRPNL+YEVR
Sbjct: 233 PDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQ 292
Query: 126 K-----DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180
K D ++D + K I+YC + ++++ L GI AYHA L
Sbjct: 293 KPSNTEDFIEDIVKLINGRYKGQS---GIIYCFSQKDSEQVTVSLRNLGIHAGAYHANLE 349
Query: 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240
+ +++V W ++ QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD
Sbjct: 350 PEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD 409
Query: 241 LPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCR 299
+ + +LYYG D R+ S E ++ + + MV YC+ S CR
Sbjct: 410 MKADCILYYGFGDIFRI------------SSMVVMENVGQQKLYE---MVSYCQNISKCR 454
Query: 300 RKKILESFGEQIPVSLCKNSCDAC 323
R + + F E C CD C
Sbjct: 455 RLLMAQHFDEVWNSEACNKMCDNC 478
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 184/321 (57%), Gaps = 30/321 (9%)
Query: 11 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
L SG+ L+LLYV+PE T F ++ S + +AIDEAHCIS WGHDFRP Y +
Sbjct: 114 LISGQ--LKLLYVSPEKVMTNSFF----QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQ 167
Query: 71 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDL 128
L L+ PD PI+ALTATA Q+D++ L L+N SF+RPN+ Y E +YK +
Sbjct: 168 LGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPM 227
Query: 129 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 188
L + A I+YC R + ++ L G+S AAYHAG+ R V
Sbjct: 228 -----EQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQ 282
Query: 189 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248
D+ QVVVAT+AFGMGI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+
Sbjct: 283 QDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLF 342
Query: 249 YGMDDRRRME-FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 307
Y D ++ +L K ++ Q E+ ++I +F+ E CRR +L F
Sbjct: 343 YEPADYAWLQKILLEKPETPQRQI----EQHKLEAIGEFA------ESQTCRRLVLLNYF 392
Query: 308 GE--QIPVSLCKNSCDACKHP 326
GE Q P C N+CD C P
Sbjct: 393 GEHRQTP---C-NNCDICLDP 409
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 187/328 (57%), Gaps = 30/328 (9%)
Query: 4 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 63
+ ++ L SG +L+LLYV+PE T F + S ++ VAIDEAHCIS WGHD
Sbjct: 117 QQQVQNKLMSG--TLKLLYVSPEKVMTTSFFHLI----SHCKVSFVAIDEAHCISQWGHD 170
Query: 64 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
FRP Y +L L++ P PI+ALTATA ++D++ L LQ+P V SF+RPN+ Y +
Sbjct: 171 FRPEYTQLGGLKSCFPHAPIMALTATADHATRQDILRHLNLQSPHVYIGSFDRPNIRYTL 230
Query: 124 --RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
++K + LC + I+YC R+ + ++ L G+S AYHAGL
Sbjct: 231 VEKFKPM-----EQLCRFVLGQKGKSGIIYCNSRSKVERIAESLRNKGVSAQAYHAGLET 285
Query: 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
R V + QVVVAT+AFGMGI++ +VR V HF++P+S+E++YQE+GRAGRD L
Sbjct: 286 SQREQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDL 345
Query: 242 PSKSLLYYGMDDRRRM-EFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRR 300
P++++L+Y D + + +L K +S Q E ++I +F+ E CRR
Sbjct: 346 PAEAVLFYEPADYAWLHKILLEKPESPQRQI----EALKLQAIGEFA------ESQTCRR 395
Query: 301 KKILESFGE--QIPVSLCKNSCDACKHP 326
+L FGE Q P C+N CD C P
Sbjct: 396 LVLLNYFGEHQQKP---CQN-CDICLDP 419
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 180/306 (58%), Gaps = 18/306 (5%)
Query: 7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
+ +D+ GK +R++Y+TPE + +S L+ + +R + L+AIDEAHCIS WGHDFR
Sbjct: 568 VLQDVKDGK--MRVIYMTPEFCSRG--ISLLQDLDNRYGITLIAIDEAHCISEWGHDFRS 623
Query: 67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
+YR L SL+ LP+VPI+ALTATA+P +++D+ +SL L NP V +SF+RPNL+ +V K
Sbjct: 624 AYRSLGSLKRMLPNVPIVALTATASPSIREDITKSLNLHNPQVTCTSFDRPNLYLDVARK 683
Query: 127 --DLLDDAYADLCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
++ D L + +G + IVYC R T ++++A L GI+C YHAG+
Sbjct: 684 TTNISIDLRQFLIKKQQGSGWEFEGATIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGI 743
Query: 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
K R V ++ VVATVAFGMGI++ D+R V H+ PK ME++YQE GRAGRD L
Sbjct: 744 KQRREVHHRFMRDEIHCVVATVAFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGL 803
Query: 242 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 301
PS + D +L + +K + + + ++M Y S CRRK
Sbjct: 804 PSCCHALWAQADMNFNRHMLGEIPNKGFREYKLKM---------LTKMEKYLNSSTCRRK 854
Query: 302 KILESF 307
IL F
Sbjct: 855 IILSHF 860
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 221 bits (563), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 177/314 (56%), Gaps = 26/314 (8%)
Query: 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
+RLLY+ PE F+ L + L+A+DEAHCIS WGHDFRP Y L LR
Sbjct: 115 QIRLLYIAPERLMLDNFLEHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQ 170
Query: 77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYA 134
P +P +ALTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L
Sbjct: 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----D 225
Query: 135 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194
L ++ I+YC R ++ +A L + GIS AAYHAGL + R+ V + +
Sbjct: 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD 285
Query: 195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254
Q+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D
Sbjct: 286 DLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD- 344
Query: 255 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE--QIP 312
M ++ + K ER ++ F+ E CRR +L FGE Q P
Sbjct: 345 --MAWLRRCLEEKPQGQLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGEGRQEP 396
Query: 313 VSLCKNSCDACKHP 326
C N CD C P
Sbjct: 397 ---CGN-CDICLDP 406
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 177/314 (56%), Gaps = 26/314 (8%)
Query: 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 76
+RLLY+ PE F+ L + L+A+DEAHCIS WGHDFRP Y L LR
Sbjct: 115 QIRLLYIAPERLMLDNFLDHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQ 170
Query: 77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYA 134
P +P +ALTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L
Sbjct: 171 RFPALPFMALTATADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----D 225
Query: 135 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194
L ++ I+YC R ++ +A L + GIS AAYHAGL + R V + +
Sbjct: 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRD 285
Query: 195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254
Q+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D
Sbjct: 286 DLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD- 344
Query: 255 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE--QIP 312
M ++ + K + ER ++ F+ E CRR +L FGE Q P
Sbjct: 345 --MAWLRRCLEEKPAGQLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGEGRQEP 396
Query: 313 VSLCKNSCDACKHP 326
C N CD C P
Sbjct: 397 ---CGN-CDICLDP 406
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 194/353 (54%), Gaps = 38/353 (10%)
Query: 19 RLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 77
+ +YV+PE + + KL+ ++L+AIDEAHCIS++G DFR +YR+++ +
Sbjct: 119 KFIYVSPESVVHLKDLIVKLEDFQG---ISLIAIDEAHCISAYGFDFRTAYREITFFKEI 175
Query: 78 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLC 137
LP+VPILALTATA V KD+ + L L+ +K+SF+RPNL+ EVR K + D+
Sbjct: 176 LPNVPILALTATATNIVAKDICKVLQLKTNEPIKASFDRPNLYLEVRTKS--KNPANDIV 233
Query: 138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
++ + I+YCL + +++ L+ + C YHAGL+++ ++ ++I+++ +
Sbjct: 234 PIINKYPNQSVIIYCLTKKETQKIADILTVHKVVCGIYHAGLSNEHKTKTHTNFINNKIK 293
Query: 198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257
+VVAT+AFGMGI++ DVR+V H+ PK++E +YQE GRAGRD S +Y D
Sbjct: 294 IVVATIAFGMGINKPDVRVVIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQDFMIQ 353
Query: 258 EFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCK 317
+S+N + N Q K ++ QM Y CRRK +LE F E+ K
Sbjct: 354 RRFISQNNNPNYQ---------KTQLALLEQMKKYVTLRTCRRKILLEYFDEE-----TK 399
Query: 318 NSCDACK-----HPNLL-------------AKYLGELTSAVLQKNHFSQIFIS 352
CD C H N++ AK + EL ++ +N ++I+
Sbjct: 400 EKCDFCDNCCGVHKNIVNENVTSKQNVQSEAKLIIELIESIPNRNFGVNMYIN 452
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 175/327 (53%), Gaps = 29/327 (8%)
Query: 2 QVKTKIYEDLDSGKP-SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60
Q +IYE L+ K + +L Y+TPE + F+ L+ I + LVAIDEAHCIS W
Sbjct: 92 QSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGID----VPLVAIDEAHCISQW 147
Query: 61 GHDFRPSYRKLSSLRNYLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL 119
GHDFRPSYR + L L D P I+ALTATA P+V D+ + L +Q + + F+R NL
Sbjct: 148 GHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENL 207
Query: 120 FYEV---RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176
++V KD D Y ++ N IVY R D + L + YH
Sbjct: 208 TFKVVKGENKDRFIDEY------VQNNRHEAGIVYTATRKEADRIYERLKRNQVRAGRYH 261
Query: 177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236
GL D R + +++ QV+VAT AFGMGID+ ++R V H IPK ME++YQE+GRA
Sbjct: 262 GGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRA 321
Query: 237 GRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS 296
GRD L S+ +L + D F++ +++ + Q K+ + QMVDYC
Sbjct: 322 GRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQ---------KQDLKKLRQMVDYCHTE 372
Query: 297 GCRRKKILESFGEQIPVSLCKNSCDAC 323
C ++ IL FGE+ P ++C C
Sbjct: 373 DCLQRFILMYFGEKEP-----DACGQC 394
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 208 bits (529), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 186/329 (56%), Gaps = 26/329 (7%)
Query: 7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
+ D+ GK R++YVTPE + G M L+++ + + L+A+DEAHCIS WGHDFR
Sbjct: 627 VLTDIKLGK--YRIVYVTPEYCS--GNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRD 682
Query: 67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
S+RKL SL+ LP VPI+ALTATA+ +++D++ L L+NP + + F+RPNL+ EVR K
Sbjct: 683 SFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRK 742
Query: 127 --DLLDDAYADLC---SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
++L D L S + G T I+YC R +++ L +SC YHAG++
Sbjct: 743 TGNILQDLQPFLVKTSSHWEFEGPT--IIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSF 800
Query: 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
R + ++ Q V+AT+AFGMGI++ D+R V H+ PK ME++YQE GRAGRD L
Sbjct: 801 STRKDIHHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGL 860
Query: 242 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 301
S + + D +L++ +++ + + + ++M Y S CRR+
Sbjct: 861 QSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKM---------MAKMEKYLHSSRCRRQ 911
Query: 302 KILESFGEQ------IPVSLCKNSCDACK 324
IL F ++ + + + CD C+
Sbjct: 912 IILSHFEDKQVQKASLGIMGTEKCCDNCR 940
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 181/330 (54%), Gaps = 27/330 (8%)
Query: 7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 66
I D+ GK R++Y+TPE + G + L+++ S + L+A+DEAHCIS WGHDFR
Sbjct: 591 ILGDVKLGK--YRVIYITPEFCS--GNLDLLQQLDSSIGITLIAVDEAHCISEWGHDFRS 646
Query: 67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
S+R L SL+ LP VP++AL+ATA+ +++D++ L L++P + + F+RPNL+ EV K
Sbjct: 647 SFRMLGSLKTALPLVPVIALSATASSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRK 706
Query: 127 --DLLDDAYADLC----SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180
++L D L S + G T I+YC R ++++A L ++C YHAG+
Sbjct: 707 TGNILQDLKPFLVRKASSAWEFEGPT--IIYCPSRKMTEQVTAELGKLNLACRTYHAGMK 764
Query: 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240
R V ++ Q VVATVAFGMGI++ D+R V H+ PK ME++YQE GRAGRD
Sbjct: 765 ISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDG 824
Query: 241 LPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRR 300
L S L + D N S+N E+ + +M Y S CRR
Sbjct: 825 LQSSCHLLWAPADF---------NTSRNLLIEIHDEKFRLYKLKMMVKMEKYLHSSQCRR 875
Query: 301 KKILESFGEQ------IPVSLCKNSCDACK 324
+ IL F ++ + + + CD C+
Sbjct: 876 RIILSHFEDKCLQKASLDIMGTEKCCDNCR 905
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 176/317 (55%), Gaps = 25/317 (7%)
Query: 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 77
+R +Y++PE+ + + L R ++L+AIDEAHC+S WGHDFR SYR L+ +RN
Sbjct: 316 IRFIYMSPEMVTSQKGLELL--TSCRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNR 373
Query: 78 --LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDLLDDA-- 132
L ++P++ALTATA +V+ DV+ +L L+ PL+ +SF+R NL+ V KD+ +D
Sbjct: 374 SDLCNIPMIALTATATVRVRDDVIANLRLRKPLITTTSFDRKNLYISVHSSKDMAEDLGL 433
Query: 133 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 192
+ V + I+YC + D+++ L G+ A YHAGL R D++
Sbjct: 434 FMKTDEVKGRHFGGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFM 493
Query: 193 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252
+ +VATVAFGMGID+ DVR V H+ P ++E++YQE GRAGRD PS +++
Sbjct: 494 RDKITTIVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPK 553
Query: 253 DRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE----GSGCRRKKILESFG 308
D ++F L +Q K ++ + + + M+ E GCRR ++L+ F
Sbjct: 554 DLNTIKFKLRNSQQK------------EEVVENLTMMLRQLELVLTTVGCRRYQLLKHFD 601
Query: 309 EQI--PVSLCKNSCDAC 323
P ++ + CD C
Sbjct: 602 PSYAKPPTMQADCCDRC 618
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 19 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 78
+ LY++PE +P + KLK + ++L IDEAHCIS WGHDFRP Y KL LR L
Sbjct: 107 KFLYLSPEALQSPYVLEKLKSVP----ISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKL 162
Query: 79 PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYA-DLC 137
P+LALTATA + +DVM L LQ+ + +S NRPN+ +R ++ D A D
Sbjct: 163 GHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNI--ALRVENAADTAEKIDRV 220
Query: 138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRK 196
L N IVYC R EL+ + + S A YH GL R + +I ++
Sbjct: 221 IQLVENLQGPGIVYCPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQL 280
Query: 197 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 256
V+ T AFGMG+D+ D+R V HF++P++ EAF QE GRAGRD PS S+L D
Sbjct: 281 DVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDFEL 340
Query: 257 MEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRR-KKILESFG 308
E I+ E + + I+D ++++ E RR + +L +G
Sbjct: 341 QEQIIQM------------ESVTAEEIADVIRVLEKTEERDERRLRDVLLQYG 381
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 137/247 (55%), Gaps = 24/247 (9%)
Query: 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL--SSLR 75
+++L+V+PE F+S + S ++LV +DEAHC+S W H+FRPSY +L S L
Sbjct: 359 IKVLFVSPERLLNVEFLSMFRMSLS---VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLF 415
Query: 76 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV------RYKDLL 129
+ L ILA+TATA + VM SL + + +++ S R N V R KDLL
Sbjct: 416 SELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLL 475
Query: 130 ----DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
Y ++ S+ IVYC + D +S YL I+ YH+GL K R
Sbjct: 476 ILMESPPYKEIRSI---------IVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRV 526
Query: 186 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 245
+ + + S++ +VVVATVAFGMG+D+ DV V HF++P SME + QE GRAGRD S
Sbjct: 527 RIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYC 586
Query: 246 LLYYGMD 252
L+Y D
Sbjct: 587 HLFYDND 593
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP----DVPILALTATAAPKVQKDVMES 101
L + +DEAHC+ WG FRP+YR+L +LR L +P+ A TATA + Q ++E
Sbjct: 136 LQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIPLAAFTATADRQQQNLIVEG 195
Query: 102 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDD--AYADLCSVLKANGDTCAIVYCLERTTCD 159
L L++P + S +RP L +V K +L + L L + ++Y RT
Sbjct: 196 LNLRSPECFQVSPHRPQLHLKV--KMVLSEYCRRQQLRRFLLKHLQESGLIYVRTRTMAI 253
Query: 160 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 219
L+ +L G AYH GL R + W++ + VV T AFG+GID+ D R V H
Sbjct: 254 NLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFGLGIDKPDTRWVLH 313
Query: 220 FNIPKSMEAFYQESGRAGRDQLPSKSLL-------YYGMDDRRRMEFILSK 263
+ P + + QE GRAGRD P++ L + DR+ ++ LS+
Sbjct: 314 YQAPLMLMDYLQEVGRAGRDLQPAECLTLVSEPTGWLDSGDRQLRQYFLSQ 364
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats.
Identities = 83/247 (33%), Positives = 115/247 (46%), Gaps = 19/247 (7%)
Query: 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-RKLSSLRN 76
+ +L +TPE G + ++ + IDEAHC+S W H+FRP Y R LR
Sbjct: 574 VHVLMLTPEALVGAGGLPPAAQLPP---VAFACIDEAHCLSQWSHNFRPCYLRVCKVLRE 630
Query: 77 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDDAYAD 135
+ L LTATA + DV + L + L P NL V D A
Sbjct: 631 RMGVHCFLGLTATATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLT 690
Query: 136 LCSVLKANGDTCAIVYCLERTTCDELSAYL----------SAGG----ISCAAYHAGLND 181
L + I+YC R + ++A L +GG + AYHAG+
Sbjct: 691 LLQGKRFQNLDSIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCS 750
Query: 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241
+ R V ++ + +VVVATVAFGMG+DR DVR V H +P S E++ Q GRAGRD
Sbjct: 751 RERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQ 810
Query: 242 PSKSLLY 248
P+ L+
Sbjct: 811 PAHCHLF 817
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats.
Identities = 78/214 (36%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 51 IDEAHCISSWGHDFRPSY-RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV 109
IDE HC+S W H+FRP Y R LR ++ L LTATA +DV + L +
Sbjct: 626 IDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAGEFE 685
Query: 110 LKSSFNRP-NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC----LERTTCDELSAY 164
L S N P NL V D A L + I+YC ++ L
Sbjct: 686 LSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRERIQNGWLALLRTC 745
Query: 165 LSAGGIS----------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 214
LS G S AYHAG++ + R V ++ ++VVATVAFGMG+DR DV
Sbjct: 746 LSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDV 805
Query: 215 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248
R V H +P S E++ Q GRAGRD P+ L+
Sbjct: 806 RAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 14/177 (7%)
Query: 148 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 207
I+Y R ++ YL G+ AAY+A L K V D+ ++ QVVVAT+AFGM
Sbjct: 500 TIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGM 559
Query: 208 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 267
GID+K+VR + H+ +S+EA+YQE+GRAGRD ++ +LY D R +L +SK
Sbjct: 560 GIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLYA---DLSRAPTLLPSRRSK 616
Query: 268 NSQSFSTRERSSKKSISD-FSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDAC 323
+ + K +SD F ++ S CR K ++E FGE+ C NSCD C
Sbjct: 617 E------QTEQAYKMLSDCFRYGMN---TSQCRAKILVEYFGEEFSSKKC-NSCDVC 663
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 12/117 (10%)
Query: 19 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NY 77
+++YV PE + L+K+ + L AIDEAHC+S WGHDFRP YRKLS LR N+
Sbjct: 257 QIIYVCPETVVR--LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENF 314
Query: 78 LP--------DVPILALTATAAPKVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRY 125
DVPI+ALTATA VQ+D++ESL L + ++ +SF RPNL + V++
Sbjct: 315 CASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKH 371
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 16/249 (6%)
Query: 11 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
L++ P L +L T E T + + + + G L V IDEAH + + G +R + +
Sbjct: 1283 LETQLPDLFIL--TYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSR 1339
Query: 71 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 130
S L P+ L+AT +++ ++ C ++ ++S R N+FY + D
Sbjct: 1340 ASRLSGLY--APLHLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDN-T 1396
Query: 131 DAYADLCSVLKAN----GDTCAIVYCLERTTCDELSAYLSAGGI----SCAAYHAGLNDK 182
+ DL +++K GD AI++C + + + L + Y ++D+
Sbjct: 1397 EFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDE 1456
Query: 183 ARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240
R D + + + ++++AT AFG+GI+ VRLV H+ +P S + QE+GRAGRD
Sbjct: 1457 ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDG 1516
Query: 241 LPSKSLLYY 249
+ + L+Y
Sbjct: 1517 KYAIAALFY 1525
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 16/249 (6%)
Query: 11 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 70
L++ P L +L T E T + + + + G L V IDEAH + + G +R + +
Sbjct: 1464 LETQLPDLFIL--TYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSR 1520
Query: 71 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 130
S L P+ L+AT +++ ++ C ++ ++S R N+FY + D
Sbjct: 1521 ASRLSGLY--APLHLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDN-T 1577
Query: 131 DAYADLCSVLKAN----GDTCAIVYCLERTTCDELSAYLSAGGI----SCAAYHAGLNDK 182
+ DL +++K GD AI++C + + + L + Y ++D+
Sbjct: 1578 EFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDE 1637
Query: 183 ARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240
R D + + + ++++AT AFG+GI+ VRLV H+ +P S + QE+GRAGRD
Sbjct: 1638 ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDG 1697
Query: 241 LPSKSLLYY 249
+ + L+Y
Sbjct: 1698 KYAIAALFY 1706
>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=DBP2 PE=3 SV=1
Length = 495
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 13 SGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRG-----LLNLVAIDEAHCISSWGHDFRP 66
S +P +R L+ E+ ATPG +L +H +G + + +DEA + G F P
Sbjct: 199 SSQPQIRALHEGAEVVIATPG---RLIDLHDQGHAPLSRVTFLVLDEADRMLDMG--FEP 253
Query: 67 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 126
RK+ N + L +AT P+ + + ES + ++ L + K
Sbjct: 254 QLRKIIPKTN--ANRQTLMWSATW-PREVRGLAESYMNE---YIQVVVGNEELKTNSKIK 307
Query: 127 DLLD-----DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181
+++ + L VL IV+C + TCD+L L+ G AA H +
Sbjct: 308 QIVEVCSGREKEDKLIGVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQ 367
Query: 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
R VLDD+ S R+ +++AT G G+D DV+LV +F+ P S E + GR R
Sbjct: 368 NIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTAR 424
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2
PE=3 SV=2
Length = 557
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
L ATPG + + +I L + + +DEA + G F P RK+ + PD L
Sbjct: 241 LIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTL 296
Query: 85 ALTATAAPKVQKDVMESLCLQNP-------LVLKSSFNRPNLFYEVRYKDLLDDAYADLC 137
+AT +VQ+ + L +P L L +S L V D D L
Sbjct: 297 MWSATWPKEVQQ--LARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKHL- 353
Query: 138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197
+ + D+ I++ + TCDE+++YL G A H + R VL+++ + R
Sbjct: 354 EIASKDKDSKIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGRSP 413
Query: 198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
++VAT GID K + V ++++P ++E + GR GR
Sbjct: 414 IMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGR 454
>sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp.
japonica GN=Os04g0510400 PE=2 SV=2
Length = 832
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 189
DD A L +L +G I++C LS+ L GI+ HA + +AR +D
Sbjct: 495 DDKDAYLYYILSVHGQGRTIIFCTSIAALRHLSSILRVLGINVLTNHAQMQQRARMKAVD 554
Query: 190 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 249
+ S ++VAT F G+D DVR V H+ +P S + + SGR R + S+
Sbjct: 555 RFRESENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALI 614
Query: 250 GMDDRRRMEFILSKNQSK-NSQSF 272
D+ + + L K+ SK N Q F
Sbjct: 615 SPADKAKF-YSLCKSLSKENLQQF 637
>sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp.
indica GN=OsI_016050 PE=2 SV=2
Length = 832
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 189
DD A L +L +G I++C LS+ L GI+ HA + +AR +D
Sbjct: 495 DDKDAYLYYILSVHGQGRTIIFCTSIAALRHLSSILRVLGINVLTNHAQMQQRARMKAVD 554
Query: 190 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 249
+ S ++VAT F G+D DVR V H+ +P S + + SGR R + S+
Sbjct: 555 RFRESENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALI 614
Query: 250 GMDDRRRMEFILSKNQSK-NSQSF 272
D+ + + L K+ SK N Q F
Sbjct: 615 SPADKAKF-YSLCKSLSKENLQQF 637
>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP2 PE=3 SV=1
Length = 554
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 14/220 (6%)
Query: 27 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
L ATPG + + +I L + + +DEA + G F P RK+ + PD L
Sbjct: 240 LIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTL 295
Query: 85 ALTATAAPKVQKDVMESLCLQNPLVLK------SSFNRPNLFYEVRYKDLLDDAYADLCS 138
+AT +V++ + S L +P+ ++ S+ + EV D A
Sbjct: 296 MWSATWPKEVKQ--LASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353
Query: 139 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 198
+ D+ I++ + TCDE+++YL G A H R VL ++ S R +
Sbjct: 354 TASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
Query: 199 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
+VAT GID K + V ++++P ++E + GR GR
Sbjct: 414 MVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGR 453
>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia
fuckeliana (strain B05.10) GN=prp5 PE=3 SV=1
Length = 1151
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 19/289 (6%)
Query: 30 TPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
TPG M +L +S + NL V +DEA + G F P K+ N P+ +
Sbjct: 684 TPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMG--FEPQVMKV--FNNIRPNRQTI 739
Query: 85 ALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNL--FYEVRY-KDLLDDAYADLCS 138
+AT P++ D + LQ+P+ V S P + EVR K+ L
Sbjct: 740 LFSATM-PRIM-DALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGE 797
Query: 139 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 198
+ + D +++ + D+L L G C + H G + R S +DD+ + +
Sbjct: 798 LYNTDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGVVPI 857
Query: 199 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 258
++AT G+D K ++LV +F+ P +E + +GR GR ++ + +++ +
Sbjct: 858 MIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFI-TEEQEQYS 916
Query: 259 FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 307
++K ++ Q R +KS D + E SG R K LE F
Sbjct: 917 VGIAKALEQSGQEVPDRLNEMRKSYKDKVKSGAKKESSGFRGKG-LERF 964
>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp5
PE=3 SV=1
Length = 1114
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 19/289 (6%)
Query: 30 TPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84
TPG M +L +S + NL V +DEA + G F P K+ N P+ +
Sbjct: 613 TPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMG--FEPQVMKV--FNNIRPNRQTI 668
Query: 85 ALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNL--FYEVRY-KDLLDDAYADLCS 138
+AT P++ D + LQ+P+ V S P + EVR K+ L
Sbjct: 669 LFSATM-PRIM-DALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGE 726
Query: 139 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 198
+ A+ D +++ + D+L L G C + H G + R S +DD+ + +
Sbjct: 727 LYNADEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGVVPI 786
Query: 199 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 258
++AT G+D K ++LV +F+ P +E + +GR GR ++ + +++ +
Sbjct: 787 MIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFI-TEEQEQYS 845
Query: 259 FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 307
++K ++ Q R +KS D + E SG K LE F
Sbjct: 846 VGIAKALEQSGQEVPERLNEMRKSYKDKVKSGAKKESSGFGGKG-LERF 893
>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP2 PE=3 SV=1
Length = 544
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 115/257 (44%), Gaps = 16/257 (6%)
Query: 7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDF 64
+Y + G+ L+ + ATPG + + + L + + +DEA + G F
Sbjct: 217 VYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMG--F 274
Query: 65 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP-------LVLKSSFNRP 117
P RK+ + PD L +AT +VQ+ + L +P L L +S N
Sbjct: 275 EPQIRKI--VDQIRPDRQTLMWSATWPKEVQQ--LARDYLNDPIQVQIGSLELAASHNIT 330
Query: 118 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 177
L V + D L + + + ++ +++ + TCDE+++YL G A H
Sbjct: 331 QLVEVVSEFEKRDRLVKHLDTASQ-DKESKILIFASTKRTCDEITSYLRQDGWPALAIHG 389
Query: 178 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 237
+ + R VL+++ + ++VAT GID K + V ++++P ++E + GR G
Sbjct: 390 DKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTG 449
Query: 238 RDQLPSKSLLYYGMDDR 254
R ++ ++ D++
Sbjct: 450 RAGATGTAISFFTEDNK 466
>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP2 PE=3 SV=2
Length = 562
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 17/244 (6%)
Query: 16 PSLRLLYVTPEL-TATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLS 72
P +R L E+ ATPG + + + L + + +DEA + G F P RK+
Sbjct: 242 PQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMG--FEPQIRKI- 298
Query: 73 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP-------LVLKSSFNRPNLFYEVRY 125
+ PD L +AT +VQ+ + L +P L L +S L +
Sbjct: 299 -VDQIRPDRQTLMWSATWPKEVQQ--LTRDYLNDPIQVTIGSLELAASHTITQLVEVIDE 355
Query: 126 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185
D L S L D +V+ + TCDE++ YL + G A H R
Sbjct: 356 FSKRDRLVKHLESALNEK-DNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERD 414
Query: 186 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 245
VLD++ + ++VAT GID K + V ++++P ++E + GR GR +
Sbjct: 415 WVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTA 474
Query: 246 LLYY 249
+ ++
Sbjct: 475 ISFF 478
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 17/232 (7%)
Query: 16 PSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLS 72
P LR L ++ ATPG ++ + ++ L ++ + +DEA + G F P RK+
Sbjct: 294 PQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMG--FEPQIRKI- 350
Query: 73 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLL 129
++ P L TAT +V+K + S L NP+ + N L +Y D++
Sbjct: 351 -VKQVQPKRQTLMFTATWPKEVRK--IASDLLSNPVQVNIG-NTDQLVANKSITQYVDVI 406
Query: 130 --DDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 186
+ L +L++ + I++C + CD+L+ L A +A H + R S
Sbjct: 407 TPPEKSRRLDQILRSQEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDS 465
Query: 187 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
VL ++ S R ++VAT G+D KD+R+V +++ P +E + GR GR
Sbjct: 466 VLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGR 517
>sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=fal-1 PE=3 SV=2
Length = 400
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 21/235 (8%)
Query: 14 GKPSLRLLYVTPELTATPGFMSKL-KKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKL 71
G+ +L Y ++ TPG ++ + ++ H R + ++ +DEA + + G FR ++
Sbjct: 135 GEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQG--FR---EQI 189
Query: 72 SSLRNYLPDVPILALTATAAP--------KVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 123
+ YLP + + + P K D + L ++ L L+ F V
Sbjct: 190 YDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLE---GLKQYFIAV 246
Query: 124 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 183
+D D DL L T A+++C R D L+ + + ++ H + K
Sbjct: 247 EKEDWKFDTLCDLYDTLTI---TQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKE 303
Query: 184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
R S++ D+ +V+++T + GID + V LV ++++P + E + GR+GR
Sbjct: 304 RDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR 358
>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp.
japonica GN=Os03g0708600 PE=2 SV=1
Length = 736
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 86 LTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 143
+AT P V++ + L+NP+V+ ++ +L + + + L +L
Sbjct: 519 FSATMPPAVER--LARKYLRNPVVVTIGTAGKATDLITQNVIMTKESEKMSRLQKILTDL 576
Query: 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203
GD AIV+C + + D + L G H G + + R + LD + + R V+VAT
Sbjct: 577 GDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKSQEQRETSLDGFRNRRFTVLVATD 636
Query: 204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238
G GID DV V ++ +P S++ + GR GR
Sbjct: 637 VAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGR 671
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,751,919
Number of Sequences: 539616
Number of extensions: 5826362
Number of successful extensions: 15785
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 14594
Number of HSP's gapped (non-prelim): 1184
length of query: 394
length of database: 191,569,459
effective HSP length: 119
effective length of query: 275
effective length of database: 127,355,155
effective search space: 35022667625
effective search space used: 35022667625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)